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"sequence": "MELSGPGAEAGVEGAAGDPYQRPARRTQWLLSALAHHYGLDRGVENEIVVLATGLDQYLQEVFHHLDCRGAGRLPRADFRALCAVLGLRADGASATEEAAVDTPVEDTNSRDVIAQDAAAGVDTDDDAEEEARLALRAEPPELTFRQFHARLCGYFGTCAGPRLPRGALSEHIETQIRLRRPRRRRRAPRTPSPDSGQDSERLARLEEENSSLRELVEDLRAALQSSDARCLALQVGLWKSQAGSQEAARSGPEAAARELRQARGALAAAQAHAVRLRRGQAEVRRRAEEARQAVLRSLGRVRELEALARQVPGLQRWVRRLEGELRRYRSEGTQLPTSAPASPEPESRSSEPEDGGTRGPELPPEGAWGSDGSSGSRALDQAVDEQLFRSVEGQAASDEEDNDKKWWEEQQPAAEIQTLLARLSSSGSGCDDQTAKKLLTYCSHFSSADHARALGELEARVAMLVEQLGTQGCSGKTLGTPGEEAELQQKVDENEHLRLELQMVEAERVRLSLLEEKLVDVLQLLQRLRDLNISKRALGKILLSTLDACRDPAHEGTSGPAILDALHQALAGCELLQKEPSVPASAGPALTNSLLISC", "length": 599, "header": "tr|A0A286ZZR9-1|A0A286ZZR9_PIG Isoform 1 of EF-hand and coiled-coil domain containing 1 OS=Sus scrofa OX=9823 GN=EFCC1 PE=4 SV=2 CANONICAL=A0A286ZZR9-1" }, "locus": { "chromosome": "13", "start_pos": 71537050, "end_pos": 71505438, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050032.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050032.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037007.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037007.2" } ] } }, { "isoform_ac": "I3L9P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZR9/entry#I3L9P1-1", "sequence": { "sequence": "MELSGPGAEAGVEGAAGDPYQRPARRTQWLLSALAHHYGLDRGVENEIVVLATGLDQYLQEVFHHLDCRGAGRLPRADFRALCAVLGLRADGASATEEAAVDTPVEDTNSRDVIAQDAAAGVDTDDDAEEEARLALRAEPPELTFRQFHARLCGYFGTCAGPRLPRGALSEHIETQIRLRRPRRRRRAPRTPSPDSGQDSERLARLEEENSSLRELVEDLRAALQSSDARCLALQVGLWKSQAGSQEAARSGPEAAARELRQARGALAAAQAHAVRLRRGQAEVRRRAEEARQAVLRSLGRVRELEALARQVPGLQRWVRRLEGELRRYRSEGTQLPTSAPASPEPESRSSEPEDGGTRGPELPPEGAWGSDGSSGSRALDQARASPAVDEQLFRSVEGQAASDEEDNDKKWWEEQQPAAEIQTLLARLSSSGSGCDDQTAKKLLTYCSHFSSADHARALGELEARVAMLVEQLGTQGCSGKTLGTPGEEAELQQKVDENEHLRLELQMVEAERVRLSLLEEKLVDVLQLLQRLRDLREHLGPGHPGCLAPSSGWL", "length": 556, "header": "tr|I3L9P1-1|A0A286ZZR9_PIG Computationally mapped isoform of EF-hand and coiled-coil domain containing 1 OS=Sus scrofa OX=9823 GN=EFCC1 PE=4 SV=3 CANONICAL=A0A286ZZR9-1" }, "locus": { "chromosome": "13", "start_pos": 71536974, "end_pos": 71505438, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028006.3", "url": "https://www.ensembl.org/id/ENSSSCT00000028006.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020754.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020754.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L9P1", "url": "https://www.uniprot.org/uniprotkb/I3L9P1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738889", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738889", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZR9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZR9" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZR9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZR9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZR9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZR9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 533, "end_pos": 535, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A286ZZR9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 599, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A286ZZR9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A286ZZR9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A286ZZR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZR9" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 89, "start_aa": "Gly", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 210, "end_pos": 212 }, { "start_pos": 533, "end_pos": 535 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A286ZZS8-1", "uniprot_ac": "A0A286ZZS8", "uniprot_id": "A0A286ZZS8_PIG", "mass": { "chemical_mass": 46092.0, "monoisotopic_mass": 46092.0 }, "refseq": { "ac": "XP_020949394", "name": "putative sodium-coupled neutral amino acid transporter 8 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949394" }, "gene_names": [ { "name": "SLC38A8", "type": "recommended", "evidence": [ { "id": "A0A286ZZS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZS8" } ] }, { "name": "SLC38A8", "type": "synonym", "evidence": [ { "id": "XP_020949394", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949394" } ] } ], "protein_names": [ { "name": "Solute carrier family 38 member 8", "type": "synonym", "evidence": [ { "id": "A0A286ZZS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZS8/entry#names_and_taxonomy" } ] }, { "name": "putative sodium-coupled neutral amino acid transporter 8 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020949394", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949394" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZS8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZS8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC38A8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZS8", "locus": { "chromosome": "6", "start_pos": 4594520, "end_pos": 4564533, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039218", "url": "https://www.ensembl.org/id/ENSSSCG00000039218" } ] } } ], "crossref": [ { "id": "A0A286ZZS8", "url": "https://alphafold.ebi.ac.uk/entry/A0A286ZZS8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039218", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039218", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110260902", "url": "https://www.ncbi.nlm.nih.gov/gene/110260902", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110260902", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260902", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QDFWKRS", "url": "https://omabrowser.org/oma/group/QDFWKRS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZZS8", "url": "https://www.orthodb.org/?gene=A0A286ZZS8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22950", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22950", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22950:SF226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22950:SF226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020949394", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949394", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZZS8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZZS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZS8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGPTPGGRGHAEKPVSAAARPNLSSLGAVFILLKSALGAGLLNFPWAFHKAGGVAPALLVELVSLVFLISGLVILGYAASVSGQATYQGVVGGLCGPAIGKLCEACFIINLLMISVAFLRVIGDQLDKLCDFLLPGAPPAPPPWYTDQRFTLTLLSLLLILPLSAPREIGFQKYTSILGTLAACYLALVVVAQYYLGPPGLAPEPLPAVSPASWTSVFSVFPTICFGFQCHEAAVSIYCSMRNQSLWHWALVSVLSLLACCLVYSLTGLYGFLTFGTEVSADILMSYPGSDGVIIVARVLFAVSIVTVYPIVLFLGRSVLQDFWRRGCCWACGPRALVEPSGPWVRMPLTVLWVTGTLALALFLPDLGEIIGIIGGISSFFIFIFPGLCLICAISVEPVGPQVRCCLEAWGVVSVLVGTFIFGQSTVAAVLELL", "length": 435, "header": "tr|A0A286ZZS8-1|A0A286ZZS8_PIG Isoform 1 of Solute carrier family 38 member 8 OS=Sus scrofa OX=9823 GN=SLC38A8 PE=3 SV=1 CANONICAL=A0A286ZZS8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZZS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZS8/entry#A0A286ZZS8-1", "sequence": { "sequence": "MEGPTPGGRGHAEKPVSAAARPNLSSLGAVFILLKSALGAGLLNFPWAFHKAGGVAPALLVELVSLVFLISGLVILGYAASVSGQATYQGVVGGLCGPAIGKLCEACFIINLLMISVAFLRVIGDQLDKLCDFLLPGAPPAPPPWYTDQRFTLTLLSLLLILPLSAPREIGFQKYTSILGTLAACYLALVVVAQYYLGPPGLAPEPLPAVSPASWTSVFSVFPTICFGFQCHEAAVSIYCSMRNQSLWHWALVSVLSLLACCLVYSLTGLYGFLTFGTEVSADILMSYPGSDGVIIVARVLFAVSIVTVYPIVLFLGRSVLQDFWRRGCCWACGPRALVEPSGPWVRMPLTVLWVTGTLALALFLPDLGEIIGIIGGISSFFIFIFPGLCLICAISVEPVGPQVRCCLEAWGVVSVLVGTFIFGQSTVAAVLELL", "length": 435, "header": "tr|A0A286ZZS8-1|A0A286ZZS8_PIG Isoform 1 of Solute carrier family 38 member 8 OS=Sus scrofa OX=9823 GN=SLC38A8 PE=3 SV=1 CANONICAL=A0A286ZZS8-1" }, "locus": { "chromosome": "6", "start_pos": 4593588, "end_pos": 4565105, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052303.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052303.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036986.1", "url": "https://www.ensembl.org/id/ENSSSCP00000036986.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 5, "start_aa": "Thr", "end_pos": 5, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr5", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZS8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZS8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110260902", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260902", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IC65-1", "protein_name": "Sodium-coupled neutral amino acid transporter 8", "gene_name": "Slc38a8", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MERQTRGSRGLLEKPLPATTSPTLSSLGAVFILLKSALGAGLLNFPWAFYKAGGLVPTFLVALVSLLFLISGLVILGYAASISGQTTYQGVVRELCGAAMGKLCEACFLTNLIMISVAFLRVIGDQLEKLCDSLLPDVPQPWYAAQDFTLPLISALVIFPLSALREIAFQKYTSILGTLAACYLALVVTVQYYLWPQGLLRQPRPLLSPSPWTSVFSVFPTICFGFQSHEAAVSIYCSLRNQSLSHWALISVSSLLACCLVYSLTGVYGFLTFGTEVSADVLMSYPGNDTAIIVARILFAVSIVTVYPIVLFLGRSVMQDFWKKSYWATHGPPVLADPSGPWVRLPLTFLWVSVTLAMALFLPDLSEIISIIGGISSFFIFIFPGLCLICAVDMEPMGPRVKCCLEAWGTLSVLVGTFIFGQSTAEAMLELL", "length": 432 }, "evidence": [ { "id": "A0A286ZZS8", "url": "https://omabrowser.org/oma/group/A0A286ZZS8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V1A1V1-1", "protein_name": "Solute carrier family 38 member 8", "gene_name": "SLC38A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MERGEGQPLLGLRNTGSAGLSSAGAVFIMLKSALGAGLLSFPWAFNKAGGAVPAILVELGSLVFLVSGLAVLGYAAALSAQPTYQGVVRAVCGPAAGRLCELCFLLNLFMIAVALLRVVGDQLEKLCDSLYPPGALSEGSPWYVDQRFTLPALCALVIFPLSVPREIGFQKYSSILGTLAACYLMLVIVLKYHLQGGSLGLLQATRPPRASSWTSMFSVIPTICFGFQCHEACVAIYSSMRNQSFSHWVAVSVLSMLICLFIYSLTGLYGYLTFGEDVAPDVLMSYPGNDPVVITARLLFGVSIVTIYPIVVLLGRSVVQDLWAHPKFKAVLVSERHERQSRVALTISWMAATLAIALFVPDIGKVIELIGGISAFFIFIFPGMCLLCMTGTQAIGAPKKAVLITWGVLSVLGGTFVCGQSAALAVMGLLR", "length": 431 }, "evidence": [ { "id": "A0A286ZZS8", "url": "https://omabrowser.org/oma/group/A0A286ZZS8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A6NNN8-1", "protein_name": "Solute carrier family 38 member 8", "gene_name": "SLC38A8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEGQTPGSRGLPEKPHPATAAATLSSMGAVFILMKSALGAGLLNFPWAFSKAGGVVPAFLVELVSLVFLISGLVILGYAAAVSGQATYQGVVRGLCGPAIGKLCEACFLLNLLMISVAFLRVIGDQLEKLCDSLLSGTPPAPQPWYADQRFTLPLLSVLVILPLSAPREIAFQKYTSILGTLAACYLALVITVQYYLWPQGLVRESHPSLSPASWTSVFSVFPTICFGFQCHEAAVSIYCSMRKRSLSHWALVSVLSLLACCLIYSLTGVYGFLTFGTEVSADVLMSYPGNDMVIIVARVLFAVSIVTVYPIVLFLGRSVMQDFWRRSCLGGWGPSALADPSGLWVRMPLTILWVTVTLAMALFMPDLSEIVSIIGGISSFFIFIFPGLCLICAMGVEPIGPRVKCCLEVWGVVSVLVGTFIFGQSTAAAVWEMF", "length": 435 }, "evidence": [ { "id": "A0A286ZZS8", "url": "https://omabrowser.org/oma/group/A0A286ZZS8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D4A0Y7-1", "protein_name": "Solute carrier family 38, member 8", "gene_name": "Slc38a8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"MEGQTPGGGGLSEKPVPTASGPGLSSLGAVFILLKSALGAGLLNFPWAFHKAGGVAPAFLVELISLVFLISGLVVLGYAASVSGQATYQGVVGGLCGPAIGKLCEACFIINLLMISVAFLRVVGDQLEKLWDFILPSTPPVPQPWYTDQRFTLTLLCVLVILPLSAPREIGFQKYTSILGTLAACYLALVIVAQYYLRPQDLAREPRLESSPSSWTSVFSVFPTICFGFQCHEAAVSIYCSMRHQSLGHWALVSVLSLLACCLVYSLTGVYGFLTFGTDVSADILMSYPGSDGVVIVARVLFAVSIVTAYPIVLFLGRSVMQDFWRRGCGRACGLRALAEPTGPWVRMPLTVLWVTATLAMALFLPDLSEIIGIIGGISSFFIFIFPGLCLICAVSVEPIGPRVKCCLEAWGVVSVLVGAFIFGQSTVAAVMELL", "length": 435 }, "evidence": [ { "id": "A0A286ZZS8", "url": "https://omabrowser.org/oma/group/A0A286ZZS8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5HZH7-1", "protein_name": "Solute carrier family 38 member 8", "gene_name": "Slc38a8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGQPRGSRGPLEKPLPAATHPTLSSLGAVFILLKSALGAGLLNFPWAFYKAGGMLPTFLVALVSLVFLISGLVILGYAASVSGQTTYQGVVRELCGPAMGKLCEICFLTNLLMISVAFLRVIGDQLEKLCDSLLPDAPQPWYAAQNFTLPLISMLVIFPLSALREIALQKYTSILGTLAACYLALVITVQYYLWPQGLIRQPGPLLSPSPWTSVFSVFPTICFGFQCHEAAVSIYCSMWNQSLSHWTLVSVLSLLACCLVYTLTGVYGFLTFGPEVSADILMSYPGNDTAIIVARVLFAVSIVTVYPIVLFLGRSVMQDFWKKSYWATRGPPVLADPSGPWVRLPLTFLWVVVTLTMALFLPDLSEIISIIGGVSSFFIFIFPGLCLICAVDTEPMGPRVKCCLEAWGILSVLVGTFIFGQSTAVAMVELL", "length": 432 }, "evidence": [ { "id": "A0A286ZZS8", "url": "https://omabrowser.org/oma/group/A0A286ZZS8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "L-amino acid transmembrane transporter activity", "id": "GO:0015179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015179", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZS8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZS8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZS8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZS8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "amino acid transmembrane transport", "id": "GO:0003333", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003333", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZS8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZS8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A286ZZS8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 435, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A286ZZS8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A286ZZS8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A286ZZS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZS8" }, { "id": "PF01490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amino acid transporter transmembrane", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 428, "start_aa": "Ser", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 5 ], "snv_sites": [], 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"field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A286ZZT1-1", "uniprot_ac": "A0A286ZZT1", "uniprot_id": "A0A286ZZT1_PIG", "mass": { "chemical_mass": 27580.0, "monoisotopic_mass": 27580.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Small ribosomal subunit protein uS5", "type": "recommended", "evidence": [ { "id": "A0A286ZZT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZT1/entry#names_and_taxonomy" } ] }, { "name": "40S ribosomal protein S2", "type": "synonym", "evidence": [ { "id": "A0A286ZZT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZT1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZT1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZT1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZT1", "locus": {} } ], "crossref": [ { "id": "A0A286ZZT1", "url": "https://alphafold.ebi.ac.uk/entry/A0A286ZZT1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017377", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017377", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000851", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000851", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005324", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005324", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005711", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005711", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014721", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014721", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13718", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13718", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13718:SF93", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13718:SF93", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00333", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00333", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03719", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03719", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZZT1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZZT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZT1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "KLIDERTRKGSVQESGEGTKTRTKQWQEDKDSRGKAEDKEWLPDTTLGHLESEITDFFLGASLKDEGLKSMPVQKQTHAGHRTRFKAFVAIGDCKGHVGLGGKCSEEVTTAIQGAITLAKLSVIPVWRGSWWSKIRKPHTGSCKVTGRCGSVPVCLFPAPRGTGMVSAPVPKKLRMMARIDDCYTSASACTAALGNFAKATFDATSKTNVYTKSPYQESTNYLVKTRARVSAQRTQAPAVATTWFYMRKIK", "length": 251, "header": "tr|A0A286ZZT1-1|A0A286ZZT1_PIG Isoform 1 of Small ribosomal subunit protein uS5 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A286ZZT1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZZT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZT1/entry#A0A286ZZT1-1", "sequence": { "sequence": "KLIDERTRKGSVQESGEGTKTRTKQWQEDKDSRGKAEDKEWLPDTTLGHLESEITDFFLGASLKDEGLKSMPVQKQTHAGHRTRFKAFVAIGDCKGHVGLGGKCSEEVTTAIQGAITLAKLSVIPVWRGSWWSKIRKPHTGSCKVTGRCGSVPVCLFPAPRGTGMVSAPVPKKLRMMARIDDCYTSASACTAALGNFAKATFDATSKTNVYTKSPYQESTNYLVKTRARVSAQRTQAPAVATTWFYMRKIK", "length": 251, "header": "tr|A0A286ZZT1-1|A0A286ZZT1_PIG Isoform 1 of Small ribosomal subunit protein uS5 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A286ZZT1-1" }, "locus": { "chromosome": "12", "start_pos": 19500149, "end_pos": 19496844, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018916.3", "url": "https://www.ensembl.org/id/ENSSSCT00000018916.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037150.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037150.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZT1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZT1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZT1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZT1" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZT1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZT1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZT1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZT1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic small ribosomal subunit", "id": "GO:0022627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022627", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZT1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZT1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A286ZZT1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 251, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, 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"database": "Ensembl Transcript", "id": "ENSSSCT00000100503.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100503.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079923.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079923.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": 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"database": "Ensembl Transcript", "id": "ENSSSCT00000044044.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044044.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037200.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037200.1" } ] } }, { "isoform_ac": "A0A5G2QAV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZY3/entry#A0A5G2QAV3-1", "sequence": { "sequence": "MDRRLLKKEIKKLLRDYIGIRLRENEFDPKGRRQLTFLDDMAHYDLAISAALQWVDHSEDLTWLEWEEVKMPFRGRPIYPNHREREAMILSSFAGILMNSIPIEEVFKIYGADASASSGTAKVT", "length": 124, "header": "tr|A0A5G2QAV3-1|A0A286ZZY3_PIG Computationally mapped isoform of Chromosome 15 C2orf80 homolog OS=Sus scrofa OX=9823 GN=C15H2orf80 PE=4 SV=1 CANONICAL=A0A286ZZY3-1" }, "locus": { "chromosome": "15", "start_pos": 111303819, "end_pos": 111281559, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087931.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087931.2" }, { "database": "Ensembl Peptide", "id": 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"tr|A0A286ZZY7-1|A0A286ZZY7_PIG Isoform 1 of PI-PLC X domain-containing protein 1 OS=Sus scrofa OX=9823 GN=LOC110258926 PE=4 SV=1 CANONICAL=A0A286ZZY7-1" }, "locus": { "chromosome": "AEMK02000451.1", "start_pos": 205740, "end_pos": 191704, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055639.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055639.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037268.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037268.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZY7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZY7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZY7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZY7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphoric diester hydrolase activity", "id": "GO:0008081", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008081", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZY7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZY7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A286ZZY7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 312, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A286ZZY7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A286ZZY7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], 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"MQSREEASRSRRLASPRGGRRPKRISKPSVSAFFTGSEELKDTAHSAALLAQLKSFYDARLLCDVTIEVVTPGSGPGTGRLFSCNRNVLAAACPYFKSMFTGGMYESHQTNVTMHDVDAESFEVLVDYCYTGRVSLSEANVQRLYAASDMLQLEYVREACASFLARRLDLANCTAILKFADAFDHHKLRSQAQSFIAHNFKQLSRMGSIREESLADLTLAQLLAVLRLDSLDIESERTVCHVAVQWLEAAPKERGPSAAEVFKCVRWTHFTDKDREYLEGLLTKPIVKKYCLDLMEGVLQMRYGDMLYKSLVPKPESSSGNSVVSIAENPPQRLGMCAKEMVIFFGHPRDPFLCYDPYSGDIYTMPSPLTSLAHTKTITSSAVCVSPDHDIYLAAQPRKDLWVYKPAQNSWQQLADRLLCREGMDVAYLNGYIYILGGRDPVTGVKLKEVECYSVQRNQWALVAPVPHSFYSFELIVVQNYLYAVNSKRMLCYDPSHNMWLNCASLKRSDFQEACVFNDEIYCICDIPVMKVYNPARGEWRRISNIPLDSETHNYQIVNHGQKLLLITSTTPQWKKNRVTVYEYDTREDQWINIGTMLGLCSLTLALFASVLEFIPPALNLVRVSSPRKMMHGVSLVLNGT", "length": 641, "header": "tr|A0A286ZZZ9-1|A0A286ZZZ9_PIG Isoform 1 of Kelch repeat and BTB domain containing 7 OS=Sus scrofa OX=9823 GN=KBTBD7 PE=4 SV=1 CANONICAL=A0A286ZZZ9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZZZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZZ9/entry#A0A286ZZZ9-1", "sequence": { "sequence": 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"https://www.uniprot.org/uniprotkb/A0A286ZZZ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AT07-1", "protein_name": "Kelch repeat and BTB domain containing 7", "gene_name": "Kbtbd7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"IPR002165", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002165", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522568", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522568", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LKAQPTC", "url": "https://omabrowser.org/oma/group/LKAQPTC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A016", "url": "https://www.orthodb.org/?gene=A0A287A016", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13055", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13055", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13055:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13055:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01437", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01437", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020920620", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920620", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A016", "url": "https://www.uniprot.org/uniprotkb/A0A287A016", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A016-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A016-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8U7", "url": "https://www.uniprot.org/uniprotkb/A0A287B8U7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8U7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8U7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BE48", "url": "https://www.uniprot.org/uniprotkb/A0A287BE48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BE48-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BE48-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARFPRADLAAAGVVLLCHFLMDRFQFAAGTPGNQVHDWHYQIAQASPQTEEEVEVDSHAYSHRWKRNLDPLKTVDSNRASVGQDSPEPRGFTDLLLDDGQDNTTQIEEDTDHNYYISRIYGPSDSASRDLWVNIDQMEKDKVKIHGILSNTHRQAARVNLSFDFPFYGHFLREITVATGGFIYTGEVVHRMLTATQYIAPLMANFDPSVSRNSTVRYFDNGTALVVQWDHVHLQDNYNLGSFTFQATLLMDGRIIFGYKEIPVLVTQISSTNHPVKVGLSDAFVVVHRIQQIPNVRRRTIYEYHRVELQMSKITNISAVEMTPLPTCLQFNGCGPCVSSQIGFNCSWCSKLQRCSSGFDRHRQDWVDSGCPEESKEKMCDTTEPVESSTQSTTTTGATTTQFRVLTTARRAATSQPPTSLPTEDDTKIALHLKDNGASTDDSAAEKKGGSLHAGLIVGILILVLIIAAAILVTVYMYHHPTSAASIFFIERRPSRWPAMKFRRGSGHPAYAEVEPVGEKEGFIVSEQC", "length": 529, "header": "tr|A0A287A016-1|A0A287A016_PIG Isoform 1 of Plexin domain containing 2 OS=Sus scrofa OX=9823 GN=PLXDC2 PE=1 SV=1 CANONICAL=A0A287A016-1" }, "isoforms": [ { "isoform_ac": "A0A287A016-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A016/entry#A0A287A016-1", "sequence": { "sequence": "MARFPRADLAAAGVVLLCHFLMDRFQFAAGTPGNQVHDWHYQIAQASPQTEEEVEVDSHAYSHRWKRNLDPLKTVDSNRASVGQDSPEPRGFTDLLLDDGQDNTTQIEEDTDHNYYISRIYGPSDSASRDLWVNIDQMEKDKVKIHGILSNTHRQAARVNLSFDFPFYGHFLREITVATGGFIYTGEVVHRMLTATQYIAPLMANFDPSVSRNSTVRYFDNGTALVVQWDHVHLQDNYNLGSFTFQATLLMDGRIIFGYKEIPVLVTQISSTNHPVKVGLSDAFVVVHRIQQIPNVRRRTIYEYHRVELQMSKITNISAVEMTPLPTCLQFNGCGPCVSSQIGFNCSWCSKLQRCSSGFDRHRQDWVDSGCPEESKEKMCDTTEPVESSTQSTTTTGATTTQFRVLTTARRAATSQPPTSLPTEDDTKIALHLKDNGASTDDSAAEKKGGSLHAGLIVGILILVLIIAAAILVTVYMYHHPTSAASIFFIERRPSRWPAMKFRRGSGHPAYAEVEPVGEKEGFIVSEQC", "length": 529, "header": "tr|A0A287A016-1|A0A287A016_PIG Isoform 1 of Plexin domain containing 2 OS=Sus scrofa OX=9823 GN=PLXDC2 PE=1 SV=1 CANONICAL=A0A287A016-1" }, "locus": { "chromosome": "10", "start_pos": 54675639, "end_pos": 54270330, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045809.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045809.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037236.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037236.1" } ] } }, { "isoform_ac": "A0A287B8U7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A016/entry#A0A287B8U7-1", "sequence": { "sequence": "MARFPRADLAAAGVVLLCHFLMDRFQFAAGTPGNQVHDWHYQIAQASPQTEEEVEVDSHAYSHRWKRNLDPLKTVDSNRASVGQDSPEPRGFTDLLLDDGQDNTTQIERVNLSFDFPFYGHFLREITVATGGFIYTGEVVHRMLTATQYIAPLMANFDPSVSRNSTVRYFDNGTALVVQWDHVHLQDNYNLGSFTFQATLLMDGRIIFGYKEIPVLVTQISSTNHPVKVGLSDAFVVVHRIQQIPNVRRRTIYEYHRVELQMSKITNISAVEMTPLPTCLQFNGCGPCVSSQIGFNCSWCSKLQRCSSGFDRHRQDWVDSGCPEESKEKMCDTTEPVESSTQSTTTTGATTTQFRVLTTARRAATSQPPTSLPTEDDTKIALHLKDNGASTDDSAAEKKGGSLHAGLIVGILILVLIIAAAILVTVYMYHHPTSAASIFFIERRPSRWPAMKFRRGSGHPAYAEVEPVGEKEGFIVSEQC", "length": 480, "header": "tr|A0A287B8U7-1|A0A287B8U7_PIG Computationally mapped isoform of Plexin domain containing 2 OS=Sus scrofa OX=9823 GN=PLXDC2 PE=1 SV=2 CANONICAL=A0A287A016-1" }, "locus": { "chromosome": "10", "start_pos": 54675639, "end_pos": 54270330, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041070.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041070.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052497.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052497.2" } ] } }, { "isoform_ac": "A0A287BE48-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A016/entry#A0A287BE48-1", "sequence": { "sequence": "MARFPRADLAAAGVVLLCHFLMDRFQFAAGTPGNQVHDWHYQIAQASPQTEEEVEVDSHAYSHRWKRNLDPLKTVDSNRASVGQDSPEPRGFTDLLLDDGQDNTTQIEEDTDHNYYISRIYGPSDSASRDLWVNIDQMEKDKVKIHGILSNTHRQAARVNLSFDFPFYGHFLREITVATGGFIYTGEVVHRMLTATQYIAPLMANFDPSVSRNSTVRYFDNGTALVVQWDHVHLQDNYNLGSFTFQATLLMDGRIIFGYKEIPVLVTQISSTNHPVKVGLSDAFVVVHRIQQIPNVRRRTIYEYHRVELQMSKITNISAVEMTPLPTCLQFNGCGPCVSSQIGFNCSWCSKLQRCSSGFDRHRQDWVDSGCPEESKEKMCDTTEPVESSTQSTTTTGATTTQFRVLTTARRAATSQPPTSLPTEDDTKIALHLKDNGASTDDSAAEKKGGSLHAGLIVGILILVLIIAAAILVTVYMYHHPTSAASIFFIERRPSRWPAMKFRRGSGHPAYAEVEPVGEKEGFISNADSFKMAKKSSRCRSQNKHKIADFLSFHQTCG", "length": 558, "header": "tr|A0A287BE48-1|A0A287BE48_PIG Computationally mapped isoform of Plexin domain containing 2 OS=Sus scrofa OX=9823 GN=PLXDC2 PE=1 SV=1 CANONICAL=A0A287A016-1" }, "locus": { "chromosome": "10", "start_pos": 54675639, "end_pos": 54269768, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061704.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061704.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054601.1", "url": "https://www.ensembl.org/id/ENSSSCP00000054601.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A016", "url": "https://www.uniprot.org/uniprotkb/A0A287A016" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522568", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522568", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XJP1-1", "protein_name": "Plexin domain containing 2", "gene_name": "PLXDC2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MARLRRSKLAAGFLLLFQFLSERCQLAAGETPSQSRGVLYEVVQSFPGVEENVQVDARVNSHRWRRHSESLKSVNTNRASMGQDSSEPGGFTDLLLEEGHENATQIEEDTDHNYYTSRTYGPYDSTSRDLWVNIDQMEKDKVKIHGILSNTHRQAARVNLSFDFPFYGHFLREITVATGGFIYTGEVVHRMLTATQYIAPLMANFDPSVSRNSTVRYFDNGTALVVQWDHVHLQDNYNLGSFTFQATLLNDGRIIFGYKEIPVAVTQISSTNHPVKVGLSDAFVVVHRIQQIPNVRRRTIYEYHRVELQMSKITNLSAVEMIPLPTCLQFNSCGPCVTAQIGFNCSWCSKLQRCSSGFDRHRQDWVDSGCPEESKDKICEKNIDTTEAPLYSTTTLQPTTTKFRVLTTTRGFTSSQLPTSLPTEDDTKIALHLKDNGASTDDSAAEKKGGTLHAGLIIGILVLVLIVAAAILVTVYMYHHPTSAASLFFIERRPSRWPAMKFRRGSGHPAYAEVEPVGEKEGFIVSEQC", "length": 529 }, "evidence": [ { "id": "A0A287A016", "url": "https://omabrowser.org/oma/group/A0A287A016/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LUU7-1", "protein_name": "Plexin domain containing 2", "gene_name": "Plxdc2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLFGCGWLMSEESLESFSKLVSLVFSKSRKLHIVSGKEKVCLASCSSAEDWKYVVANTSPQSEEGVEVDSQAYSHRWKRNVDPFKAVDTNRASMGQDSPESRGFPDLLLDDGQDNTTQIEEDTDHNYYISRIYGPADSASRDLWVNIDQMEKDKVKIHGILSNTHRQAARVNLSFDFPFYGHFLNEVTVATGGFIYTGEVVHRMLTATQYIAPLMANFDPSVSRNSTVRYFDNGTALVVQWDHVHLQDNYNLGSFTFQATLLMDGRIIFGYKEIPVLVTQISSTNHPVKVGLSDAFVVVHRIQQIPNVRRRTIYEYHRVELQMSKITNISAVEMTPLPTCLQFNGCGPCVSSQIGFNCSWCSKLQRCSSGFDRHRQDWVDSGCPEEVQSKEKMCENTEPGETSQTTTTAQTTTTQFRVLTTTRRAVTSHMPTSLPTEDDTKIALHLKDSGASTDDSAAEKKGGTLHAGLIVGILILVLIIAAAILVTVYMYHHPTSAASIFFIERRPSRWPAMKFRRGSGHPAYAEVEPVGEKEGFIVSEQC", "length": 542 }, "evidence": [ { "id": "A0A287A016", "url": "https://omabrowser.org/oma/group/A0A287A016/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6UX71-1", "protein_name": "Plexin domain-containing protein 2", "gene_name": "PLXDC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARFPKADLAAAGVMLLCHFFTDQFQFADGKPGDQILDWQYGVTQAFPHTEEEVEVDSHAYSHRWKRNLDFLKAVDTNRASVGQDSPEPRSFTDLLLDDGQDNNTQIEEDTDHNYYISRIYGPSDSASRDLWVNIDQMEKDKVKIHGILSNTHRQAARVNLSFDFPFYGHFLREITVATGGFIYTGEVVHRMLTATQYIAPLMANFDPSVSRNSTVRYFDNGTALVVQWDHVHLQDNYNLGSFTFQATLLMDGRIIFGYKEIPVLVTQISSTNHPVKVGLSDAFVVVHRIQQIPNVRRRTIYEYHRVELQMSKITNISAVEMTPLPTCLQFNRCGPCVSSQIGFNCSWCSKLQRCSSGFDRHRQDWVDSGCPEESKEKMCENTEPVETSSRTTTTVGATTTQFRVLTTTRRAVTSQFPTSLPTEDDTKIALHLKDNGASTDDSAAEKKGGTLHAGLIIGILILVLIVATAILVTVYMYHHPTSAASIFFIERRPSRWPAMKFRRGSGHPAYAEVEPVGEKEGFIVSEQC", "length": 529 }, "evidence": [ { "id": "A0A287A016", "url": "https://omabrowser.org/oma/group/A0A287A016/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287A016", "url": "https://www.uniprot.org/uniprotkb/A0A287A016" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "A0A287A016", "url": "https://www.uniprot.org/uniprotkb/A0A287A016" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 213, "end_pos": 215, "annotation": "n_glycosylation_sequon" }, { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" }, { "start_pos": 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"binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 160, "end_pos": 162 }, { "start_pos": 213, "end_pos": 215 }, { "start_pos": 221, "end_pos": 223 }, { "start_pos": 316, "end_pos": 318 }, { "start_pos": 345, "end_pos": 347 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A017-1", "uniprot_ac": "A0A287A017", "uniprot_id": "A0A287A017_PIG", "mass": { "chemical_mass": 75840.0, "monoisotopic_mass": 75840.0 }, "refseq": {}, "gene_names": [ { "name": "TTC12", "type": "recommended", "evidence": [ { "id": "A0A287A017", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A017" } ] } ], "protein_names": [ { "name": "Tetratricopeptide repeat protein 12", "type": "recommended", "evidence": [ { "id": "A0A287A017", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A017/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Cytoplasmic protein that plays a role in the proper assembly of dynein arm complexes in motile cilia in both respiratory cells and sperm flagella.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BEX6", "url": "https://www.uniprot.org/uniprotkb/A0A287BEX6#function" }, { "database": "UniProtKB", "id": "ARBA00060127", "url": "https://www.uniprot.org/uniprotkb/ARBA00060127#function" }, { "database": "UniProtKB", "id": "A0A287A017", "url": "https://www.uniprot.org/uniprotkb/A0A287A017#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A017", "url": "https://www.uniprot.org/uniprotkb/A0A287A017" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TTC12", "url": "https://www.uniprot.org/uniprotkb/A0A287A017", "locus": { "chromosome": "9", "start_pos": 41046900, "end_pos": 40988920, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015047", "url": "https://www.ensembl.org/id/ENSSSCG00000015047" } ] } } ], "crossref": [ { "id": "A0A287A017", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A017", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015047", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015047", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46540", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46540", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46540:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46540:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00515", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00515", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A017", "url": "https://www.uniprot.org/uniprotkb/A0A287A017", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A017-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A017-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEX6", "url": "https://www.uniprot.org/uniprotkb/A0A287BEX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEX6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV09", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV09-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV09-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHZ1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM70", "url": "https://www.uniprot.org/uniprotkb/F1SM70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM70-1", "url": "https://www.uniprot.org/uniprotkb/F1SM70-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADYQEKDLQKFLKNVDEITSLIQEMNSDDPVVQEKAVLETEKRLQFMEQDREEDECRTTVNRTVISPPQAPAKNADEISSEAFLASVEKDAKERAKRRRENKVLADALKEKGNEAFGKGDYETAISCYSEGLEKLKDMKVLYTNRAQAYIKLGDYRKALTDCDWALKCDEKCTKAYFHMGKAHLALKNYSESRECYQKILEINPQLQTQVKGYLNQVDLREKADLQEKEAQDLLDSGKDTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMMKDCAERTLFRTHNGFSIISDNEVIRRCLSTAGKDAVEETVCVSVLRLWQAVCSENEENQRLLVMHPTRGQLLPALLASRVPTIQEQSLALLLQLAQTENGRGLIISHLDLTRLLEALVSFLDFSEKKANSAMALLTDLALEERFHVWFQASLPGALPALAAVLKRDPRVTSTSALCQCIAILGNLSAEPAARRQLFASEEFGDACLGLMAKCEEDMDLFREVMYTLLGLMMNLCLQPSLVSERAAGVLSRTLSSSLTIVEEALRAGVVKKMIKFLKAGGQTASRYAIKILAICTNSYHEAREEVIRLDKKLSVLMQLLGSEDEILVGNAALCLGNCMEVPLVASSLLTTDIVQVLLRLAGGDAQKTAVQLNAGIALGKLCTAEPRFAALLRELHGMEILNSTMKHVDRS", "length": 682, "header": "tr|A0A287A017-1|A0A287A017_PIG Isoform 1 of Tetratricopeptide repeat protein 12 OS=Sus scrofa OX=9823 GN=TTC12 PE=1 SV=1 CANONICAL=A0A287A017-1" }, "isoforms": [ { "isoform_ac": "A0A287A017-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A017/entry#A0A287A017-1", "sequence": { "sequence": "MADYQEKDLQKFLKNVDEITSLIQEMNSDDPVVQEKAVLETEKRLQFMEQDREEDECRTTVNRTVISPPQAPAKNADEISSEAFLASVEKDAKERAKRRRENKVLADALKEKGNEAFGKGDYETAISCYSEGLEKLKDMKVLYTNRAQAYIKLGDYRKALTDCDWALKCDEKCTKAYFHMGKAHLALKNYSESRECYQKILEINPQLQTQVKGYLNQVDLREKADLQEKEAQDLLDSGKDTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMMKDCAERTLFRTHNGFSIISDNEVIRRCLSTAGKDAVEETVCVSVLRLWQAVCSENEENQRLLVMHPTRGQLLPALLASRVPTIQEQSLALLLQLAQTENGRGLIISHLDLTRLLEALVSFLDFSEKKANSAMALLTDLALEERFHVWFQASLPGALPALAAVLKRDPRVTSTSALCQCIAILGNLSAEPAARRQLFASEEFGDACLGLMAKCEEDMDLFREVMYTLLGLMMNLCLQPSLVSERAAGVLSRTLSSSLTIVEEALRAGVVKKMIKFLKAGGQTASRYAIKILAICTNSYHEAREEVIRLDKKLSVLMQLLGSEDEILVGNAALCLGNCMEVPLVASSLLTTDIVQVLLRLAGGDAQKTAVQLNAGIALGKLCTAEPRFAALLRELHGMEILNSTMKHVDRS", "length": 682, "header": "tr|A0A287A017-1|A0A287A017_PIG Isoform 1 of Tetratricopeptide repeat protein 12 OS=Sus scrofa OX=9823 GN=TTC12 PE=1 SV=1 CANONICAL=A0A287A017-1" }, "locus": { "chromosome": "9", "start_pos": 41032657, "end_pos": 40990564, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058250.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058250.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037072.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037072.2" } ] } }, { "isoform_ac": "A0A287BEX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A017/entry#A0A287BEX6-1", "sequence": { "sequence": "MADYQEKDLQKFLKNVDEITSLIQEMNSDDPVVQEKAVLETEKRLQFMEQDREEDECRTTVNRTVISPPQAPAKNADEISSEAFLASVEKDAKERAKRRRENKVLADALKEKGNEAFGKGDYETAISCYSEGLEKLKDMKVLYTNRAQAYIKLGDYRKALTDCDWALKCDEKCTKAYFHMGKAHLALKNYSESRECYQKILEINPQLQTQVKGYLNQVDLREKADLQEKEAQDLLDSGKDTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMMKDCAERTLFRTHNGFSIISDNEVIRRCLSTAGKDAVEETVCVSVLRLWQAVCSENEENQRLLVMHPTRGQLLPALLASRVPTIQEQSLALLLQLAQTENGRGLIISHLDLTRLLEALVSFLDFSEKKANSAMALLTDLALEERFHVWFQASLPGALPALAAVLKRDPRVTSTSALCQCIAILGNLSAEPAARRQLFASEEFGDACLGLMAKCEEDMDLFREVMYTLLGLMMNLCLQPSLVSEVWAMEVSRKCLSLLNSPDGGILTRAAGVLSRTLSSSLTIVEEALRAGVVKKMIKFLKAGGQTASRYAIKILAICTNSYHEAREEVIRLDKKLSVLMQLLGSEDEILVGNAALCLGNCMEVPLVASSLLTTDIVQVLLRLAGGDAQKTAVQLNAGIALGKLSVRTKDSDTKKFAETNQAPPLPCL", "length": 699, "header": "tr|A0A287BEX6-1|A0A287BEX6_PIG Computationally mapped isoform of Tetratricopeptide repeat protein 12 OS=Sus scrofa OX=9823 GN=TTC12 PE=1 SV=1 CANONICAL=A0A287A017-1" }, "locus": { "chromosome": "9", "start_pos": 41046549, "end_pos": 40990564, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044881.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044881.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055086.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055086.2" } ] } }, { "isoform_ac": "A0A5G2QV09-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A017/entry#A0A5G2QV09-1", "sequence": { "sequence": "MGLYRLRAVTSLAVPGQWTLRSGCWATVPSAPPLCAGWGGASGVSGLLAAAQSPRATGSCPRIYAAPAAVSLAVPGLPDPSWVRFLTLRGFAAQSQGAPLGLPWEQRAWRLPAGIQSLPSALPQLGWTFGTHWRPFHSKTAERDSGSQWLTIKRKTCRNFLKMWMKSAYIKLGDYRKALTDCDWALKCDEKCTKAYFHMGKAHLALKNYSESRECYQKILEINPQLQTQVKGYLNQVDLREKADLQEKEAQDLLDSGKDTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMMKDCAERTLFRTHNGFSIISDNEVIRRCLSTAGKDAVEETVCVSVLRLWQAVCSENEENQRLLVMHPTRGQLLPALLASRVPTIQEQSLALLLQLAQTENGRGLIISHLDLTRLLEALVSFLDFSEKKANSAMALLTDLALEERFHVWFQASLPGALPALAAVLKRDPRVTSTSALCQCIAILGNLSAEPAARRQLFASEEFGDACLGLMAKCEEDMDLFREVMYTLLGLMMNLCLQPSLVSEVWAMEVSRKCLSLLNSPDGGILTRAAGVLSRTLSSSLTIVEEALRAGVVKKMIKFLKAGGQTASRYAIKILAICTNSYHEAREEVIRLDKKLSVLMQLLGSEDEILVGNAALCLGNCMEVPLVASSLLTTDIVQVLLRLAGGDAQKTAVQLNAGIALGKLCTAEPRFAALLRELHGMEILNSTMKHVDRS", "length": 724, "header": "tr|A0A5G2QV09-1|A0A287A017_PIG Computationally mapped isoform of Tetratricopeptide repeat protein 12 OS=Sus scrofa OX=9823 GN=TTC12 PE=1 SV=1 CANONICAL=A0A287A017-1" }, "locus": { "chromosome": "9", "start_pos": 41032657, "end_pos": 40989033, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085977.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085977.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065797.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065797.1" } ] } }, { "isoform_ac": "A0A8W4FHZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A017/entry#A0A8W4FHZ1-1", "sequence": { "sequence": "MADYQEKDLQKFLKNVDEITSLIQEMNSDDPVVQEKAVLETEKRLQFMEQDREEDECRTTVNRTVISPPQAPAKNADEISSEFSSVWRELTCTTFILIALKEKGNEAFGKGDYETAISCYSEGLEKLKDMKVLYTNRAQAYIKLGDYRKALTDCDWALKCDEKCTKAYFHMGKAHLALKNYSESRECYQKILEINPQLQTQVKGYLNQVDLREKADLQEKEAQDLLDSGKDTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMMKDCAERTLFRTHNGFSIISDNEVIRRCLSTAGKDAVEETVCVSVLRLWQAVCSENEENQRLLVMHPTRGQLLPALLASRVPTIQEQSLALLLQLAQTENGRGLIISHLDLTRLLEALVSFLDFSEKKANSAMALLTDLALEERFHVWFQASLPGALPALAAVLKRDPRVTSTSALCQCIAILGNLSAEPAARRQLFASEEFGDACLGLMAKCEEDMDLFREVMYTLLGLMMNLCLQPSLVSEVWAMEVSRKCLSLLNSPDGGILTRAAGVLSRTLSSSLTIVEEALRAGVVKKMIKFLKAGGQTASRYAIKILAICTNSYHEAREEVIRLDKKLSVLMQLLGSEDEILVGNAALCLGNCMEVPLVASSLLTTDIVQVLLRLAGGDAQKTAVQLNAGIALGKLCACLAPPLPAREQVPSADREGLWPACFLLLEPCPPSLLWGMRGLAWMTSKALSSSAC", "length": 723, "header": "tr|A0A8W4FHZ1-1|A0A287A017_PIG Computationally mapped isoform of Tetratricopeptide repeat protein 12 OS=Sus scrofa OX=9823 GN=TTC12 PE=1 SV=1 CANONICAL=A0A287A017-1" }, "locus": { "chromosome": "9", "start_pos": 41032286, "end_pos": 40990564, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095413.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095413.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078502.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078502.1" } ] } }, { "isoform_ac": "F1SM70-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A017/entry#F1SM70-1", "sequence": { "sequence": "MADYQEKDLQKFLKNVDEITSLIQEMNSDDPVVQEKAVLETEKRLQFMEQDREEDECRTTVNRTVISPPQAPAKNADEISSEFSSVWRELTCTTFILIALKEKGNEAFGKGDYETAISCYSEGLEKLKDMKVLYTNRAQAYIKLGDYRKALTDCDWALKCDEKCTKAYFHMGKAHLALKNYSESRECYQKILEINPQLQTQVKGYLNQVDLREKADLQEKEAQDLLDSGKDTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMMKDCAERTLFRTHNGFSIISDNEVIRRCLSTAGKDAVEETVCVSVLRLWQAVCSENEENQRLLVMHPTRGQLLPALLASRVPTIQEQSLALLLQLAQTENGRGLIISHLDLTRLLEALVSFLDFSEKKANSAMALLTDLALEERFHVWFQASLPGALPALAAVLKRDPRVTSTSALCQCIAILGNLSAEPAARRQLFASEEFGDACLGLMAKCEEDMDLFREVMYTLLGLMMNLCLQPSLVSEVWAMEVSRKCLSLLNSPDGGILTRAAGVLSRTLSSSLTIVEEALRAGVVKKMIKFLKAGGQTASRYAIKILAICTNSYHEAREEVIRLDKKLSVLMQLLGSEDEILVGNAALCLGNCMEVPLVASSLLTTDIVQVLLRLAGGDAQKTAVQLNAGIALGKLCTAEPRFAALLRELHGMEILNSTMKHVDRS", "length": 696, "header": "tr|F1SM70-1|A0A287A017_PIG Computationally mapped isoform of Tetratricopeptide repeat protein 12 OS=Sus scrofa OX=9823 GN=TTC12 PE=1 SV=2 CANONICAL=A0A287A017-1" }, "locus": { "chromosome": "9", "start_pos": 41032657, "end_pos": 40990564, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016413.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016413.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015972.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015972.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV09", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV09" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287A017", "url": "https://www.uniprot.org/uniprotkb/A0A287A017" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A287A017", "url": "https://www.uniprot.org/uniprotkb/A0A287A017" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cell projection organization", "id": "GO:0030030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030030", "evidence": [ { "database": "UniProtKB", "id": "A0A287A017", "url": "https://www.uniprot.org/uniprotkb/A0A287A017" } ], "pmid": "" }, { "name": "sperm axoneme assembly", "id": "GO:0007288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007288", "evidence": [ { "database": "UniProtKB", "id": "A0A287A017", "url": "https://www.uniprot.org/uniprotkb/A0A287A017" } ], "pmid": "" }, { "name": "axonemal dynein complex assembly", "id": "GO:0070286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070286", "evidence": [ { "database": "UniProtKB", "id": "A0A287A017", "url": "https://www.uniprot.org/uniprotkb/A0A287A017" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 457, "end_pos": 459, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" }, { "start_pos": 673, "end_pos": 675, "annotation": "n_glycosylation_sequon" } ], 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"tr|A0A287A2T6-1|A0A287A2T6_PIG Isoform 1 of Acetylserotonin O-methyltransferase like OS=Sus scrofa OX=9823 GN=ASMTL PE=3 SV=2 CANONICAL=A0A287A2T6-1" }, "locus": { "chromosome": "AEMK02000569.1", "start_pos": 820442, "end_pos": 800795, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059357.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059357.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038067.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038067.2" } ] } }, { "isoform_ac": "A0A287BDT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2T6/entry#A0A287BDT0-1", "sequence": { "sequence": 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dimerisation", "eco_id": "ECO_0000259", "start_pos": 310, "end_pos": 388, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A053-1", "uniprot_ac": "A0A287A053", "uniprot_id": "A0A287A053_PIG", "mass": { "chemical_mass": 104314.0, "monoisotopic_mass": 104314.0 }, "refseq": { "ac": "XP_005663139", "name": "protein FAN isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663139" }, "gene_names": [ { "name": "NSMAF", "type": "recommended", "evidence": [ { "id": "A0A287A053", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A053" } ] }, { "name": "NSMAF", "type": "synonym", "evidence": [ { "id": "XP_005663139", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663139" } ] } ], "protein_names": [ { "name": "Neutral sphingomyelinase activation associated factor", "type": "synonym", "evidence": [ { "id": "A0A287A053", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A053/entry#names_and_taxonomy" } ] }, { "name": "protein FAN isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005663139", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663139" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A053", "url": "https://www.uniprot.org/uniprotkb/A0A287A053" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NSMAF", "url": "https://www.uniprot.org/uniprotkb/A0A287A053", "locus": { "chromosome": "4", "start_pos": 74298193, "end_pos": 74236826, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006236", "url": "https://www.ensembl.org/id/ENSSSCG00000006236" } ] } } ], "crossref": [ { "id": "A0A287A053", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A053", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006236", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006236", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06071", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06071", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153039", "url": "https://www.ncbi.nlm.nih.gov/gene/100153039", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057496", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057496", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153039", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153039", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QVYKRRY", "url": "https://omabrowser.org/oma/group/QVYKRRY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A053", "url": "https://www.orthodb.org/?gene=A0A287A053", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13743", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13743", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13743:SF123", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13743:SF123", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02138", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02138", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02893", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02893", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5626978", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5626978", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005663139", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663139", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A053", "url": "https://www.uniprot.org/uniprotkb/A0A287A053", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A053-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A053-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AE81", "url": "https://www.uniprot.org/uniprotkb/A0A287AE81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AE81-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AE81-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXX0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXX0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RT84", "url": "https://www.uniprot.org/uniprotkb/F1RT84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RT84-1", "url": "https://www.uniprot.org/uniprotkb/F1RT84-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFIRKKQRERQLQLYSRERFSLLLLNLEEYYFEQHSANHIQHKGSQSERKIRGSLKICSKSVIFEPDAISQPIIKIPLRDCIKIGKHGENGANRHFAKTLSGEISLIFSQVYFIKEHNIVAPYKIERGTMEYVFELDVSGKVEDVVETLLQLHRASCLDKLGDQAAMITAILQSRLARTSFDKNRFQSVSEKLHMECKAEMVTPLVTNPGHVCITDTTLYFQPLNGYPKPVVQITLQDVRRVYRRRHGLMPLGLEVFCTEDDLCSDIYLKFYEPQDRDDLYFFIATYLEHHVAERTAESYMLQWQRGHLSNYQYLLHLNTLADRSCNDLSQYPVFPWVISDYCSAELDLSNPGTFRDLSKPVGALNKERLERLLTRYQEMPEPKFMYGSHYSSPGYVLFYLVRIAPEYMLCLQNGRFDHADRMFNSIAETWRNCLDGATDFKELIPEFYGEDVSFLVNSLRLDLGKKQGGQLVEDVELPPWAQSPEDFLQKSRDALESDHVSEHLHEWIDLVFGYKQKGRDAVEAHNVFHPLTYEGGVDLNSIEDPDEKVALLTQILEFGQTPKQLFVTPHPRRITPKFKSLPQTSSYNASTADSPVSPGEESFEDLTEESRTLAWSNITKLQLHEQHKIHKEAVTGIAVSGNGSSVFTTSHDSTLKMFSKESKMLQRSISFSNMALSSCFLLPGDATVASSSWDNNIYFYSIAFGRRQDTLMGHDDAVSKICWHDNRLYSASWDSTVKVWSALPAGTTGAQRLQFELLAELEHDVGVDTMSLNAASALLVSGTREGAVNIWDLATATVLHQIPCHSGTVCHTAFSPDSRHVLSTGEDGSLNVIDVQTGMLISSLTSAEPQRCFLWDGNSVLSGSQSGELLVWDLLGAKISERIRGHTGAVTCMWMNEQCSSVITGGEDRQIIFWKLQY", "length": 920, "header": "tr|A0A287A053-1|A0A287A053_PIG Isoform 1 of Neutral sphingomyelinase activation associated factor OS=Sus scrofa OX=9823 GN=NSMAF PE=4 SV=1 CANONICAL=A0A287A053-1" }, "isoforms": [ { "isoform_ac": "A0A287A053-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A053/entry#A0A287A053-1", "sequence": { "sequence": "MAFIRKKQRERQLQLYSRERFSLLLLNLEEYYFEQHSANHIQHKGSQSERKIRGSLKICSKSVIFEPDAISQPIIKIPLRDCIKIGKHGENGANRHFAKTLSGEISLIFSQVYFIKEHNIVAPYKIERGTMEYVFELDVSGKVEDVVETLLQLHRASCLDKLGDQAAMITAILQSRLARTSFDKNRFQSVSEKLHMECKAEMVTPLVTNPGHVCITDTTLYFQPLNGYPKPVVQITLQDVRRVYRRRHGLMPLGLEVFCTEDDLCSDIYLKFYEPQDRDDLYFFIATYLEHHVAERTAESYMLQWQRGHLSNYQYLLHLNTLADRSCNDLSQYPVFPWVISDYCSAELDLSNPGTFRDLSKPVGALNKERLERLLTRYQEMPEPKFMYGSHYSSPGYVLFYLVRIAPEYMLCLQNGRFDHADRMFNSIAETWRNCLDGATDFKELIPEFYGEDVSFLVNSLRLDLGKKQGGQLVEDVELPPWAQSPEDFLQKSRDALESDHVSEHLHEWIDLVFGYKQKGRDAVEAHNVFHPLTYEGGVDLNSIEDPDEKVALLTQILEFGQTPKQLFVTPHPRRITPKFKSLPQTSSYNASTADSPVSPGEESFEDLTEESRTLAWSNITKLQLHEQHKIHKEAVTGIAVSGNGSSVFTTSHDSTLKMFSKESKMLQRSISFSNMALSSCFLLPGDATVASSSWDNNIYFYSIAFGRRQDTLMGHDDAVSKICWHDNRLYSASWDSTVKVWSALPAGTTGAQRLQFELLAELEHDVGVDTMSLNAASALLVSGTREGAVNIWDLATATVLHQIPCHSGTVCHTAFSPDSRHVLSTGEDGSLNVIDVQTGMLISSLTSAEPQRCFLWDGNSVLSGSQSGELLVWDLLGAKISERIRGHTGAVTCMWMNEQCSSVITGGEDRQIIFWKLQY", "length": 920, "header": "tr|A0A287A053-1|A0A287A053_PIG Isoform 1 of Neutral sphingomyelinase activation associated factor OS=Sus scrofa OX=9823 GN=NSMAF PE=4 SV=1 CANONICAL=A0A287A053-1" }, "locus": { "chromosome": "4", "start_pos": 74294857, "end_pos": 74236874, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039673.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039673.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037319.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037319.1" } ] } }, { "isoform_ac": "A0A287AE81-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A053/entry#A0A287AE81-1", "sequence": { "sequence": "MLDVPVPWMFPGPYPQTRFSLLLLNLEEYYFEQHSANHIQHKGSQSERKIRGSLKICSKSVIFEPDAISQPIIKIPLRDCIKIGKHGENGANRHFAKTLSGEISLIFSQVYFIKEHNIVAPYKIERGTMEYVFELDVSGKVEDVVETLLQLHRASCLDKLGDQAAMITAILQSRLARTSFDKNRFQSVSEKLHMECKAEMVTPLVTNPGHVCITDTTLYFQPLNGYPKPVVQITLQDVRRVYRRRHGLMPLGLEVFCTEDDLCSDIYLKFYEPQDRDDLYFFIATYLEHHVAERTAESYMLQWQRGHLSNYQYLLHLNTLADRSCNDLSQYPVFPWVISDYCSAELDLSNPGTFRDLSKPVGALNKERLERLLTRYQEMPEPKFMYGSHYSSPGYVLFYLVRIAPEYMLCLQNGRFDHADRMFNSIAETWRNCLDGATDFKELIPEFYGEDVSFLVNSLRLDLGKKQGGQLVEDVELPPWAQSPEDFLQKSRDALESDHVSEHLHEWIDLVFGYKQKGRDAVEAHNVFHPLTYEGGVDLNSIEDPDEKVALLTQILEFGQTPKQLFVTPHPRRITPKFKSLPQTSSYNASTADSPVSPGEESFEDLTEESRTLAWSNITKLQLHEQHKIHKEAVTGIAVSGNGSSVFTTSHDSTLKMFSKESKMLQRSISFSNMALSSCFLLPGDATVASSSWDNNIYFYSIAFGRRQDTLMGHDDAVSKICWHDNRLYSASWDSTVKVWSALPAGTTGAQRLQFELLAELEHDVGVDTMSLNAASALLVSGTREGAVNIWDLATATVLHQIPCHSGTVCHTAFSPDSRHVLSTGEDGSLNVIDVQTGMLISSLTSAEPQRCFLWDGNSVLSGSQSGELLVWDLLGAKISERIRGHTGAVTCMWMNEQCSSVITGGEDRQIIFWKLQY", "length": 918, "header": "tr|A0A287AE81-1|A0A287AE81_PIG Computationally mapped isoform of Neutral sphingomyelinase activation associated factor OS=Sus scrofa OX=9823 GN=NSMAF PE=4 SV=3 CANONICAL=A0A287A053-1" }, "locus": { "chromosome": "4", "start_pos": 74294857, "end_pos": 74249304, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056791.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056791.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042277.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042277.3" } ] } }, { "isoform_ac": "A0A5G2QXX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A053/entry#A0A5G2QXX0-1", "sequence": { "sequence": "MAFIRKKQRERQLQLYSRERFSLLLLNLEEYYFEQHSANHIQHKGSQSERKIRGSLKICSKSVIFEPDAISQPIIKIPLRDCIKIGKHGENGANRHFAKTLSGEISLIFSQVYFIKEHNIVAPYKIERGTMEYVFELDVSGKVEDVVETLLQLHRASCLDKLGDQAAMITAILQSRLARTSFDKNRFQSVSEKLHMECKAEMVTPLVTNPGHVCITDTTLYFQPLNGYPKPVVQITLQDVRRVYRRRHGLMPLGLEVFCTEDDLCSDIYLKFYEPQDRDDLYFFIATYLEHHVAERTAESYMLQWQRGHLSNYQYLLHLNTLADRSCNDLSQYPVFPWVISDYCSAELDLSNPGTFRDLSKPVGALNKERLERLLTRYQEMPEPKFMYGSHYSSPGYVLFYLVRIAPEYMLCLQNGRFDHADRMFNSIAETWRNCLDGATDFKELIPEFYGEDVSFLVNSLRLDLGKKQGGQLVEDVELPPWAQSPEDFLQKSRDALESDHVSEHLHEWIDLVFGYKQKGRDAVEAHNVFHPLTYEGGVDLNSIEDPDEKVALLTQILEFGQTPKQLFVTPHPRRITPKFKSLPQTSSYNASTADSPVSPGEESFEDLTEESRTLAWSNITKLQLHEQHKIHKEAVTGIAVSGNGSSVFTTSHDSTLKMFSKESKMLQRSISFSNMALSSCFLLPGDATVASSSWDNNIYFYSIAFGRRQDTLMGHDDAVSKICWHDNRLYSASWDSTVKVWSALPAGTTGAQRLQFELLAELEHDVGVDTMSLNAASALLVSGTREGAVNIWDLATATVLHQIPCHSGTVRRDMHVDERTVQQCHHGR", "length": 829, "header": "tr|A0A5G2QXX0-1|A0A287A053_PIG Computationally mapped isoform of Neutral sphingomyelinase activation associated factor OS=Sus scrofa OX=9823 GN=NSMAF PE=4 SV=1 CANONICAL=A0A287A053-1" }, "locus": { "chromosome": "4", "start_pos": 74294820, "end_pos": 74236874, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080748.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080748.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066794.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066794.1" } ] } }, { "isoform_ac": "F1RT84-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A053/entry#F1RT84-1", "sequence": { "sequence": "MAFIRKKQRERQLQLYSRERFSLLLLNLEEYYFEQHSANHIQHKGSQSERTLSGEISLIFSQVYFIKEHNIVAPYKIERGTMEYVFELDVSGKVEDVVETLLQLHRASCLDKLGDQAAMITAILQSRLARTSFDKNRFQSVSEKLHMECKAEMVTPLVTNPGHVCITDTTLYFQPLNGYPKPVVQITLQDVRRVYRRRHGLMPLGLEVFCTEDDLCSDIYLKFYEPQDRDDLYFFIATYLEHHVAERTAESYMLQWQRGHLSNYQYLLHLNTLADRSCNDLSQYPVFPWVISDYCSAELDLSNPGTFRDLSKPVGALNKERLERLLTRYQEMPEPKFMYGSHYSSPGYVLFYLVRIAPEYMLCLQNGRFDHADRMFNSIAETWRNCLDGATDFKELIPEFYGEDVSFLVNSLRLDLGKKQGGQLVEDVELPPWAQSPEDFLQKSRDALESDHVSEHLHEWIDLVFGYKQKGRDAVEAHNVFHPLTYEGGVDLNSIEDPDEKVALLTQILEFGQTPKQLFVTPHPRRITPKFKSLPQTSSYNASTADSPVSPGEESFEDLTEESRTLAWSNITKLQLHEQHKIHKEAVTGIAVSGNGSSVFTTSHDSTLKMFSKESKMLQRSISFSNMALSSCFLLPGDATVASSSWDNNIYFYSIAFGRRQDTLMGHDDAVSKICWHDNRLYSASWDSTVKVWSALPAGTTGAQRLQFELLAELEHDVGVDTMSLNAASALLVSGTREGAVNIWDLATATVLHQIPCHSGTVCHTAFSPDSRHVLSTGEDGSLNVIDVQTGMLISSLTSAEPQRCFLWDGNSVLSGSQSGELLVWDLLGAKISERIRGHTGAVTCMWMNEQCSSVITGGEDRQIIFWKLQY", "length": 871, "header": "tr|F1RT84-1|A0A287A053_PIG Computationally mapped isoform of Neutral sphingomyelinase activation associated factor OS=Sus scrofa OX=9823 GN=NSMAF PE=4 SV=3 CANONICAL=A0A287A053-1" }, "locus": { "chromosome": "4", "start_pos": 74294857, "end_pos": 74236874, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006833.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006833.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006647.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006647.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXX0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXX0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153039", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153039", "resource": "KEGG Pathway" }, { "id": "R-SSC-5626978", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5626978", "resource": "Reactome", "description": "TNFR1-mediated ceramide production" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XC36-1", "protein_name": "Neutral sphingomyelinase activation associated factor", "gene_name": "NSMAF", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRVVSCWNRLPRVVADAPSQGVFKARFSLLLLNLEEYYFEQHRANHIINKGCRDERKIRGSLKVCSKSIIFEPDESLQPIIKIPLRDCVSIKAPEDNEANNPFLRETSGGISVVCNQVFLIKERNVIAPYKTIRGKTEHLFQLDVAGKLGDVVQTLHQLYRASCLDKMGDQAAMITAILQSRLARTSFDKNRFQSISETLRMECKAEMVTPLVTNPGHVCVTDANLYFQPLNGYPKPVVQITLQNVRRIYKRRHGLMPLGLEVFCTENDICSDIYLKFYNCQDRDELYYLIAAYIENHITEHTAESYMLQWQRGHISNYQYLLHLNNLADRSCNDLSQYPVFPWIIADYSSTELDLTKPETFRDLSKPIGALNKERLERLLTRYEEMPEPKFMYGSHYSSPGYVLFYLVRVAPEYMLCLQNGKFDHADRMFNSVAETWKNCLDGATDFKELIPEFYENDSSFLVNSLKLDLGKRQGGKAVEDVELPPWASGPDDFLRKSQEALESQYVSEHLHEWIDLVFGCKQKGSKAVTACNVFHPLTYEGGVDLNSIMDPNEKVALLTQILEFGQTPKQLFTTPHPQRIMPKSSSRTSSHSVSITESPVSPNEESFEDLTEESITLAWNNISKLRQDEQYKIHKEAITGIAVTCNGSSVFTTSQDSTLKMFSKESKTLQRSVSFSNMALSSCIILPGDTTVVSSSWDNNIYFYSVAFGRRQDILMGHDDAVSKICWRDGCLYSASWDSTVKVWKCVPGETLSNKRNCFELLAELEHDVSVNTIDLTASNSILASGTKEGTISVWDVTTATVLHQLPCHSGTVFDAAFSPDGRHLLSAGEDCCFKVIDVQTGMLISSVTAGEPQRCFRWDGNTVLSGSQSGELLTWDLLSGKVTERIKGHAGAVTSMWMNEQCNSVITGGEDRQIIFWKLQY", "length": 924 }, "evidence": [ { "id": "A0A287A053", "url": "https://omabrowser.org/oma/group/A0A287A053/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0KZI8-1", "protein_name": "Protein FAN", "gene_name": "Nsmaf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAFTRKRQREQQLQLYSKERCAGREVGPGGSQGLLWRPQSRGWARLAGNLRTRRQGRARARARPPAIPSQRLPTDPPRPAAGLCGRLLEKRARPDGRGQPRPSEDEGRAPASFRSCPHTGKRTSARFSLLLLNLEEYYFEQHTAFHVQHQGSPEERKIRGSLKICSKSVIFEPDAISQPILKIPLRDCLKIGKHGENGANKHFAKAKSLGISLIFSQVYFIKEHNIVAPYKIERGKMEYVFQLEVSGKVEDVVETLLQLHRASCLDKLGDQMAMITAILQSRLARTSFDKNRFQSVSEKLHMECKAEMVTPLVTNPGHVCITDTNLYFQPLNGYPKPVVQITLQDVRRIYKRRHGLMPLGLEVFCTEDDLCSDIYLKFYEPQDRDDLYFYIATYLEHHVAEHTAESYMLQWQRGHLSNYQYLLHLNNLADRSCNDLSQYPVFPWVISDYSSPELDLSNPATFRDLSKPVGALNPERLERLLTRYQEMPEPKFMYGSHYSSPGYVLFYLVRIAPEYMLCLQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEFYDEDASFLINSLKLDLGKRQGGQMVDDVELPAWASSPQDFLQKNKDALESSYVSEHLHEWIDLIFGYKQKGSEAIGAHNVFHPLTYEGGVDLNSIEDPDDKVAMLTQILEFGQTPKQLFVTPHPRRITPKFKSLSQASSYNASMTDSPVSPGEESFEDLTEESKTLAWNNITKLQLHEQYKIHKEAVTGIAVSCNGSSVFTTSQDSTLKMFSKESKMLQRSISFSNMALSSCLLLPGDTTVISSSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICWHNDRLYSASWDSTVKVWSGVPAEMPGTKRHQFDLLAELEHDVSVNTINLNAVSTLLVSGTKEGLVNIWDLTTATLLHQISCHSGTVCDAAFSPDSRHVLSTGVDGCLNVIDVQTGMLISSMASEEPQRCFVWDGNSVLSGSRTGELLVWDLLGAKVSERIQGHTGAVTCIWMNEQCSSIITGGEDRQVMFWKLQY", "length": 1026 }, "evidence": [ { "id": "A0A287A053", "url": "https://omabrowser.org/oma/group/A0A287A053/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QZ06-1", "protein_name": "Protein FAN isoform X1", "gene_name": "nsmaf", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAFITKKDRSKERFSLLLLDLEEQYFEQHIAYNLTNRGPETNRRTNGSLKICSKSVIFEPDDAVKPILKIPLKDCSEIAAVEETAHNPFIESKPACIVIKTKQIYQIKEENVVAPYKYDRGEKKITFQLGSPIKTEDVVQILLQLHRASRLDKQSDQTAMIAAILQSRLARTRFDKNSFQNVTELPHMECEAEMVSPLVTNAGHVCITDCNLYFQPLNSYPDSVVQIGLHSVRRIYKRRHGLRPLGLEVFCTENDLCSDIYLKFYKTKDRDELYYYIATFLENHVAEHTAESYMLQWQRGHISNYQYLLHLNNLADRSVNDLSQYPVFPWVISDYSSTQLDLLNPASFRDLSKPIGALNKERLERLLERYRDMPEPRFMYGSHYSSPGYVLFYLVRVAPEHMLCLQNGRFDHADRMFNSIGETWKNCLEGGTDFKELIPEFYGSDSSFLRNLLGLDLGRRQGGGRVENVELPPWASDPDDFLQKMCLALESQYVSEHLHEWIDLIFGYKQRGSEAVASHNVFHPLTYEGGVDCDSIEDPDQKIAMLTQILEFGQTPRQLFVTPHPQRITPRFYNLSTTPSLSSSELSPVSPCMESFEDLTEESRKMAWSNMNKLVLQSCHKIHKEAVTGVAVTLSGDSIFTTSQDSTLKMFSKENGLQRSVSFSNMALSSCLMLPDDKIVVCSSWDNNVYFYSIAYGRRQDTLMGHDDAVSDICWRDDKLYTASWDSTVKVWECVAADISSNKRTQFDPLAEFEHEAGVNTLDLSPAGTLLATGTKEGTLTVWDLASPLPVNQLTCHSGKIHQVAFSPDSRHILSVGEDSCLMVTDVQTGMLIATIPAEQEQRCFCWDGNTVLSGGISGDLSVWNLLNSKVVHKIPAAHSGAVTCMWMNEQCSSIITGGLDKQIILWKPQY", "length": 911 }, "evidence": [ { "id": "A0A287A053", "url": "https://omabrowser.org/oma/group/A0A287A053/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O35242-1", "protein_name": "Protein FAN", "gene_name": "Nsmaf", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFTRKRQREQQLQLYSKERFSLLLLNLEEYYFEQHTAFHVQHQGSQEERKIRGSLKICSKSVIFEPDAISQPILKIPLRDCLKIGKHGENGANKHFAKAKSWGISLIFSQIYFIKEHNIVAPYKIERGKMEYVFELEVSGKVEDVVETLLQLHRASCLDKLGDQMAMITAILQSRLARTSFDKNRFQSVSEKLHMECKAEMVTPLVTNPGHVCITDTSLYFQPLNGYPKPVVQITLQDVRRIYKRRHGLMPLGLEVFCTDDDLCSDIYLKFYEPQDRDDLYFYIATYLEHHAAEHTAESYMLQWQRGHLSNYQYLLHLNNLADRSCNDLSQYPVFPWIISDYSSPELDLSNPATFRDLSKPVGALNAERLERLLTRYQEMPEPRFMYGSHYSSPGYVLFYLVRIAPEYMLCLQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEFYDEDVSFLVNSLKLDLGKRQGGQMVDDVDLPAWASSPQDFLQKNKDALESGYVSEHLHEWIDLIFGYKQKGSEAIGAHNVFHPLTYEGGVDLNSIEDPDEKVAMLTQILEFGQTPKQLFVTPHPRRITPKFKSLSQASSYNASLTDSPVSPGEESFEDLTEESRTLAWSNIAKLQLHEQYKIHKEAVTGIAVSCNGSSVFTTSQDSTLKMFSKESKMLQRSISFSNMALSSCLLLPGDTTVISSSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICWHNDRLYSGSWDSTVKVWSGVPAEMPGTKRHQFDLLAELEHDVSVNTINLNAVSTLLVSGTKEGMVNIWDLTTATLLHQTSCHSGTVCDAAFSPDSRHILSTGVDGCLNVIDVQTGMLISSMASEEPQRCFVWDGNSVLSGSRSGELLVWDLLGAKVSERIQGHTGAVTCMWMNEQCSSIITGGEDRQIMFWKLQY", "length": 920 }, "evidence": [ { "id": "A0A287A053", "url": "https://omabrowser.org/oma/group/A0A287A053/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54PP7-1", "protein_name": "BEACH domain-containing protein lvsF", "gene_name": "lvsF", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKNINKVRFNLTLMDEGEYYFDDYSAIFYPPSNTEEESWQKRIAGRILVCSSSMFFEPDDSKLPIMKFPYKDMSSIGAWLNSLSSAPPAHLPTPQPIPQSILSPSKPTPTPTPPIVVEQPSPTRSAFSRLLSFSSLTSKVTTPTPPTPTPTPPTPQPTSIAPTPTIATNPYTSFSVSPNPPSPLLSQLFEQAKPSFLASKGDIFYVKSSQVIEMKENSRNHPYIFKQYNNIDFKFSFNYVKQNIVLDVMKVFHNYSGKEKIQRDELIKQMVEDRENKIFFDITQLVDMNERNILELKCSKISPLVENPGRLLITNARLYFQPMNNIEENRLKNYSLQSIIRVLQRRHSLREIGLELFFDDGSSLFLKFNNTITRNQVYDLLVKHLCTNIMHINEQANYLLKWQNGIISNYDYLLYLNNLAGRTFNDLTQYPVFPWIIADYQSTTLDLNRNETFRDLSKPIGALNPTRLATFQDRYHQIPDDQPKFLYGTHYSTPAYVLYFLVRQVPEYMLRLQNGRFDSPNRMFYSIEETWNSVLNSTTDVKELIPEFYKPSFESSSSSRNGGGGDDDDNFENGIFLTNSENLPLGIRQDNNVINDIILPPWASSPKDFISKLHQALESEYVSQNLHHWIDLIFGYKQKGEEAVRANNLFYHLTYEGSIDIESITNPFEREGMEAQINEFGQTPRQIFKTPHPQRLPQQLRNQNLKIELSDLEQNINFIFDELNNCNINELNNDNDNNLNNNNNNNNNNNSNSNSNLNNNYIDSNINNNINNIENINSLNNENNENSNDKKNNSNSNSSDNIKNSNGFENNDNNFNNENENLNDENENLTFLGEERNNSNNWGSLNFLKFNQNIKLHKDKISALYLSNNSETIYSVSLDSCLKIYSLKEKRQIRSLNLCNLALSSFQLSKDEKYIIIGSWDNNIYVYSVGNGSISYSIPGHSDAVSCLKLHNNNILVSGSWDSSVKVWRTHRQSNGAISIEKTPIADFVDSDTEIRSIDISSNGTIFCAGSSDGYLYFYDLLTLQLIRRISCFFDELVCIKFTPDGSRIITACIDGSVKLIGIEGSEIFSFKVKGEIHCLDSDGSSLIIGTDRGLCLWSLTTGTEIKDSISPFLSQSSNESIHSLNVSINQSSNKPILLTGTEAGSISIWQQ", "length": 1154 }, "evidence": [ { "id": "A0A287A053", "url": "https://omabrowser.org/oma/group/A0A287A053/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q92636-1", "protein_name": "Protein FAN", "gene_name": "NSMAF", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAFIRKKQQEQQLQLYSKERFSLLLLNLEEYYFEQHRANHILHKGSHHERKIRGSLKICSKSVIFEPDSISQPIIKIPLRDCIKIGKHGENGANRHFTKAKSGGISLIFSQVYFIKEHNVVAPYKIERGKMEYVFELDVPGKVEDVVETLLQLHRASCLDKLGDQTAMITAILQSRLARTSFDKNRFQNISEKLHMECKAEMVTPLVTNPGHVCITDTNLYFQPLNGYPKPVVQITLQDVRRIYKRRHGLMPLGLEVFCTEDDLCSDIYLKFYEPQDRDDLYFYIATYLEHHVAEHTAESYMLQWQRGHLSNYQYLLHLNNLADRSCNDLSQYPVFPWIIHDYSSSELDLSNPGTFRDLSKPVGALNKERLERLLTRYQEMPEPKFMYGSHYSSPGYVLFYLVRIAPEYMLCLQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEFYGDDVSFLVNSLKLDLGKRQGGQMVDDVELPPWASSPEDFLQKSKDALESNYVSEHLHEWIDLIFGYKQKGSDAVGAHNVFHPLTYEGGVDLNSIQDPDEKVAMLTQILEFGQTPKQLFVTPHPRRITPKFKSLSQTSSYNASMADSPGEESFEDLTEESKTLAWNNITKLQLHEHYKIHKEAVTGITVSRNGSSVFTTSQDSTLKMFSKESKMLQRSISFSNMALSSCLLLPGDATVITSSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICWHDNRLYSASWDSTVKVWSGVPAEMPGTKRHHFDLLAELEHDVSVDTISLNAASTLLVSGTKEGTVNIWDLTTATLMHQIPCHSGIVCDTAFSPDSRHVLSTGTDGCLNVIDVQTGMLISSMTSDEPQRCFVWDGNSVLSGSQSGELLVWDLLGAKISERIQGHTGAVTCIWMNEQCSSIITGGEDRQIIFWKLQY", "length": 917 }, "evidence": [ { "id": "A0A287A053", "url": "https://omabrowser.org/oma/group/A0A287A053/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "sphingomyelin phosphodiesterase activator activity", "id": "GO:0016230", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016230", "evidence": [ { "database": "UniProtKB", "id": "A0A287A053", "url": "https://www.uniprot.org/uniprotkb/A0A287A053" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "tumor necrosis factor-mediated signaling pathway", "id": "GO:0033209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033209", "evidence": [ { "database": "UniProtKB", "id": "A0A287A053", "url": "https://www.uniprot.org/uniprotkb/A0A287A053" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 590, "end_pos": 592, "annotation": "n_glycosylation_sequon" }, { "start_pos": 619, "end_pos": 621, "annotation": "n_glycosylation_sequon" }, { "start_pos": 644, "end_pos": 646, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A053-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 920, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A053-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A053" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A053", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A053" }, { "id": "PS50197", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50197" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BEACH", "eco_id": "ECO_0000259", "start_pos": 290, "end_pos": 575, "start_aa": "Glu", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287A053", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A053" }, { "id": "PS51783", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51783" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BEACH-type PH", "eco_id": "ECO_0000259", "start_pos": 189, "end_pos": 286, "start_aa": "Ser", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 590, "end_pos": 592 }, { "start_pos": 619, "end_pos": 621 }, { "start_pos": 644, "end_pos": 646 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { 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"tr|A0A8W4FK56-1|A0A287A3V0_PIG Computationally mapped isoform of Zinc finger protein 709-like OS=Sus scrofa OX=9823 GN=LOC102167351 PE=3 SV=1 CANONICAL=A0A287A3V0-1" }, "locus": { "chromosome": "2", "start_pos": 66878784, "end_pos": 66876997, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092975.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092975.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078690.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078690.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FK56", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK56" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102167351", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102167351", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A0Y1-1", "uniprot_ac": "A0A287A0Y1", "uniprot_id": "A0A287A0Y1_PIG", "mass": { "chemical_mass": 43216.0, "monoisotopic_mass": 43216.0 }, "refseq": {}, "gene_names": [ { "name": "MYG1", "type": "recommended", "evidence": [ { "id": "A0A287A0Y1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A0Y1" } ] } ], "protein_names": [ { "name": "MYG1 exonuclease", "type": "synonym", "evidence": [ { "id": "A0A287A0Y1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A0Y1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A0Y1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0Y1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYG1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0Y1", "locus": { "chromosome": "5", "start_pos": 18525877, "end_pos": 18517001, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000046295", "url": "https://www.ensembl.org/id/ENSSSCG00000046295" } ] } } ], "crossref": [ { "id": "A0A287A0Y1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A0Y1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046295", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046295", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516439", "url": "https://www.ncbi.nlm.nih.gov/gene/100516439", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003226", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003226", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516439", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516439", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FHCDEVV", "url": "https://omabrowser.org/oma/group/FHCDEVV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A0Y1", "url": "https://www.orthodb.org/?gene=A0A287A0Y1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11215", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11215", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11215:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11215:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A0Y1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0Y1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A0Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0Y1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGHRFLRGLLPLLLPLPPVPTLWGPHRTLSLEFVLPSKRPRSHLMAPPRIGTHNGTFHCDEALACALLRLLPEYRDAEIVRTRDPEKLASCDIVVDVGGEYDPQRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDSVVGILYDKMYENFVEEVDAVDNGIAQWEEGEPRYALTTTLSARVARLNPTWNQPNQDTEAGFKRAMDLVREEFLQRLDFYQHSWLPARALVEEALAQRFQVDASGKIIELAKGGCPWKEHLYHLELDLSPPVAISFVIYTDQAGQWRVQCVPKELHSFQSRLPLPEPWRGLRDEALDQVSGIPGCVFVHASGFIGGHRTREGALSMARTTLALHSAPLPPTNPLGQ", "length": 384, "header": "tr|A0A287A0Y1-1|A0A287A0Y1_PIG Isoform 1 of MYG1 exonuclease OS=Sus scrofa OX=9823 GN=MYG1 PE=1 SV=2 CANONICAL=A0A287A0Y1-1" }, "isoforms": [ { "isoform_ac": "A0A287A0Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0Y1/entry#A0A287A0Y1-1", "sequence": { "sequence": "MGHRFLRGLLPLLLPLPPVPTLWGPHRTLSLEFVLPSKRPRSHLMAPPRIGTHNGTFHCDEALACALLRLLPEYRDAEIVRTRDPEKLASCDIVVDVGGEYDPQRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDSVVGILYDKMYENFVEEVDAVDNGIAQWEEGEPRYALTTTLSARVARLNPTWNQPNQDTEAGFKRAMDLVREEFLQRLDFYQHSWLPARALVEEALAQRFQVDASGKIIELAKGGCPWKEHLYHLELDLSPPVAISFVIYTDQAGQWRVQCVPKELHSFQSRLPLPEPWRGLRDEALDQVSGIPGCVFVHASGFIGGHRTREGALSMARTTLALHSAPLPPTNPLGQ", "length": 384, "header": "tr|A0A287A0Y1-1|A0A287A0Y1_PIG Isoform 1 of MYG1 exonuclease OS=Sus scrofa OX=9823 GN=MYG1 PE=1 SV=2 CANONICAL=A0A287A0Y1-1" }, "locus": { "chromosome": "5", "start_pos": 18525861, "end_pos": 18517200, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065109.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065109.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037584.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037584.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A0Y1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0Y1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516439", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516439", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A140LG01-1", "protein_name": "MYG1 exonuclease", "gene_name": "myg1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTHAHTASPVRLAALQRRQSSSRGSSSSRNHQMRVCSRLLSSVLINKHHLMKMKMKIGTHNGTFHCDEVLACFLLRQLPEYKDAEIVRSRDASVLAECDVVVDVGGEYDHSRQRYDHHQRAFAESFHSVCAQKPWVTKLSSAGLVYVHYGRRVLQQLTHLQEDEPQLEVLYDKMYEGFVEEVDAVDNGISQSDGEQRYTISSTISSRVSYLNPQWNSKEQDTEEGFRKALALVGSEFQDRLLYFTNAWLPARDVVLQAIKSRHQVDVSGQVLLLQQGGCPWKEHLFALEKELQLQELIKFVLYCDQNGHWRVQCVPAGPNTFQNRLSLLEEWRGLRDDALSELSGIPECIFVHAGGFIGGNKTQSGALEMARRTLQTAPTH", "length": 381 }, "evidence": [ { "id": "A0A287A0Y1", "url": "https://omabrowser.org/oma/group/A0A287A0Y1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0ZZL9-1", "protein_name": "MYG1 exonuclease", "gene_name": "C12orf10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRAALRAVPLMAAAVAGSGAGPKRARTEPPLRIGTHDGTFHCDEALACYLLRLLPRYRPHPIAQQDAEVVRTRDPQRLAQCDVVVDVGGEYDPERHRYDHHQRSFTQSMQSLQPSKPWTTKLSSAGLVYCHFGSEILAGLLGQPEDSPAVTALYDKLYENFVEEIDAIDNGIAQTDGEPRYALTTNLSARVGHLNPRWNDPDQDTEAGFKRAMELVGSEFMDRLDYYHRAWLPARALVEDAIRRRFEVDTSGVLLELPQGGCPWKEHLFSLEKELVLPDPLQLVLFPDRSGQWRVQSVPVGPRSFESRLPLPEPWRGVRDEALSQLTGIPGCVFVHSSGFIGGNRTREGALEMARRTLALQGVGAQSG", "length": 368 }, "evidence": [ { "id": "A0A287A0Y1", "url": "https://omabrowser.org/oma/group/A0A287A0Y1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F4K000-1", "protein_name": "Metal-dependent protein hydrolase", "gene_name": "MJC20.7", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMFSVTKGLIRNLALFQVRLPPLVAAVMAPSSVVRVYSTATSPSPSEISVKKVGTHNGSFHCDEALGCFMIRLVDKFSGADIVRSRDPKILAELDAVLDVGGVYDPEHDRYDHHQKGFEEVFGHGFNTKLSSAGLVYKHFGKEIIAKELNVEQDHPDVLRLFLAVYKSFMEAIDAVDNGINRYDTDQPPRYVNNTHLSPRVGRLNLDWIDPDQSQEKENEAFQRAMALAGKEFLESVQFHARSWLPARSIVMQCLEERFKTDPSGEIMILDRFCPWKLHLFELEQEMKIEPLIKYVIYQDERAKQWRVQAVAVAPDRFENRKPLPEKWRGLRDEELSKAAEIPGCVFVHMSGFIGGNQSYDGALSMAQTALTL", "length": 373 }, "evidence": [ { "id": "A0A287A0Y1", "url": "https://omabrowser.org/oma/group/A0A287A0Y1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "G3HV49-1", "protein_name": "MYG1 exonuclease isoform X1", "gene_name": "Myg1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGCFLRDILTVLLPLRSLLQTQRRMLGSESVSPPKRPRSNLMAPPRIGTHNGTFHCDEALACALLRLLPEYKDAEIVRTRDPEKLASCDIVVDVGGEYNPLRHRYDHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGHKLLAQLLGTSEEDSIVDTLYDKMYENFVEEVDAVDNGISQWEEGEPRYALTTTLSARVSRLNPTWNQPNQDTEAGFRRAMDLVQEEFLQRLNFYQHSWLPARALVEEALAQRFQVDSSGKIVELAKGGCPWKEHLYHLESELSPPVAITFVIYTDQAGQWRVQCVPKEPHSFQSRLPLPEPWRGLRDEALDQVSGIPGCIFVHASGFIGGHRTREGALNMARATLAQHPAPTPLANAVVK", "length": 381 }, "evidence": [ { "id": "A0A287A0Y1", "url": "https://omabrowser.org/oma/group/A0A287A0Y1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P40093-1", "protein_name": "MYG1 protein YER156C", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MNSVKRVKLNSKMSKQICTHSGSFHADESLAVYMLRLLPEFKDAKLVRSRNPKDWEASDILVDVGAQYDGVKFFDHHQRGFFETFNEKYKTKLSSAGLIFKHYGRDIIKTILNNKVSSSDLDLLYDKVYKQFVEALDANDNGISKYTIPKDSNLEPNFRDNAISIPGIISGMNPNWNEDTSDESFDRCFARASEFIGGVFVTLVRGYGQSWLPAKALVAQAIDERMDVDKSGKIIVLPQFCPWKEHLYELEREKNIEKQIEFVLFTDSSGAWRVSTVPINSTSFQFRRGLPEPLRGLRDEELSTKSGVPGCIFIHAAGFIGGAKSKEAVYELAKMSLA", "length": 338 }, "evidence": [ { "id": "A0A287A0Y1", "url": "https://omabrowser.org/oma/group/A0A287A0Y1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q55G91-1", "protein_name": "MYG1 protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDLTICTHSGSFHADEALACYLLKLLPTYKDSKIIRSRDKSVIEKSTVAVDVGAVYNFEKLRFDHHQSGFTETFDDKHDIKLSSAGLIYKHYGKDIIKQRLDTNDSITELLYQKLYDSMIQELDGVDNGVERYPSDIKPRYQSGSSISARVGHLNQGWNEPQDDEIVNKQFEKAMELMGQYFLDRLDYYGKSWLPCRSIVENALENRKQTHSSGEILILDMFCPWKDHLFSLEQEKDIKTPIKFVLFEDTSGQWRVSAVGINLHSFTLRLPLPEEWRGKRDEELSQISGIEGCVFAHANGFIGGNKTREGALLMAIKTLNQSPKTLLE", "length": 329 }, "evidence": [ { "id": "A0A287A0Y1", "url": "https://omabrowser.org/oma/group/A0A287A0Y1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q58DG1-1", "protein_name": "MYG1 exonuclease", "gene_name": "MYG1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGHRFLRGFLRVLLPPLPLRSPHLKLSLEPVAPSKRPRSHLMAPPRIGTHNGTFHCDEALACALLRLLPEYREAEIVRTRDPEKLAACDIVVDVGGEYDPQRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDGMVGTLYDKMYENFVEEVDAVDNGISQWEEGEPRYLLTTTLSARVARLNPTWNQPNQDTEAGFKRAMDLVREEFLQRLDFYQNSWLPARTLVEEALAKRFQVDPSGEIIELEKGGCPWKEHLYQLELGLSPAGTIAFVIYTDQAGQWRVQCVPKEPHSFQSRLPLLEPWRGLRDEALDQISGIPGCIFVHASGFIGGHRTREGALSMARATLAQRPAPTPAPNPMVQ", "length": 381 }, "evidence": [ { "id": "A0A287A0Y1", "url": "https://omabrowser.org/oma/group/A0A287A0Y1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q641W2-1", "protein_name": "MYG1 exonuclease", "gene_name": "Myg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRGFLRGVLTLLPLRSVLQVQHCMLVSEPDLPPKRPRNNLMAPPRIGTHNGTFHCDEALACALLRLLPEYRNAEIVRTRDPEKLALCDIVVDVGGEYNPQRHRYDHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGHKLLAQLLGTSEEDSVVDTIYDKMYENFVEEVDAVDNGISQWAEGEPRYALTTTLSARVSRLNPTWNQPDQDTEAGFRRAMDLVQEEFLQRLNFYQHSWLPARALVEEALAQRFKVDSSGEIVELAKGGCPWKEHLYHLESELSPTVAITFVIYTDQAGQWRVQCVPKEPHSFQSRLPLPEPWRGLRDEALDQVSGIPGCIFVHASGFIGGHHTREGALNMARATLAQRTAPVPLANAVVQ", "length": 381 }, "evidence": [ { "id": "A0A287A0Y1", "url": "https://omabrowser.org/oma/group/A0A287A0Y1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8INP9-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG11980", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFRLLPRFPGKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVACFMLKQLDEYKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQITFKETFSSVRPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSPENLQTAFIQIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNPSWQETGVDIEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAKNVHPTGEILVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGVPVTPGSYLGRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEEAAMLLAKKSTEWTEEQ", "length": 359 }, "evidence": [ { "id": "A0A287A0Y1", "url": "https://omabrowser.org/oma/group/A0A287A0Y1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9HB07-1", "protein_name": "MYG1 exonuclease", "gene_name": "MYG1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"recommended", "evidence": [ { "id": "A0A287A111", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A111" } ] } ], "protein_names": [ { "name": "RNA exonuclease 5", "type": "recommended", "evidence": [ { "id": "A0A287A111", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A111/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A111", "url": "https://www.uniprot.org/uniprotkb/A0A287A111" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "REXO5", "url": "https://www.uniprot.org/uniprotkb/A0A287A111", "locus": { "chromosome": "3", "start_pos": 25177693, "end_pos": 25238998, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007855", "url": 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"https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013520", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013520", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034922", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034922", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512042", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512042", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PHICIQY", "url": "https://omabrowser.org/oma/group/PHICIQY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QNV5", "url": "https://www.orthodb.org/?gene=A0A5G2QNV5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12801", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12801", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12801:SF82", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12801:SF82", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00929", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00929", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A111", "url": "https://www.uniprot.org/uniprotkb/A0A287A111", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A111-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A111-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALT9", "url": "https://www.uniprot.org/uniprotkb/A0A287ALT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALT9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBK1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNV5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDB0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPERERTGRAPKRGKKRRRVANQLVGAAEAMRARWDLEERQQPEAKKARLSTILFAENCEITHGQLCELLKYAVLGKSSVPKPSWCQLFHQNHLNNVVVFILQGMSQLHFYRFYLEFGFLRKAFRHKFRLPPPSSDFLADIIGLQRKKKIGDLSKTMEGSLPSVSSKVSISPQNDPIIQKYGSKKVGLTRCLLTKEEMKAYHFPLQGFPDCENFVPTKCNGSITDNSPLFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPDNKIVDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKTILGKDIQCPDRLGHDAIEDARTTLELARYFLKYGPKKIAELNLETVASHQELQAAGQEPRNTAEVVQQLNAGVLECLDSLGQKLLFLTREADASELSSSKTCQTIKCLSNKEVLEQARVEIPLFPFSIVQFSFEPFSPNLTEEMNKRMLIKWTEMSTVYAGPFSKNCNLRALKKLFKSFGPVRSMTLVLETHQPHLCIQYEVLEAAQLAIESLDGILVEGACIKVQRPVTELTLDCDTLVNELEHDSENRGTIYLSGVRETFKEHLLQRSSLFLGLEAVILPKDLKSGKQKKYCFLRFKTFGRAQRALDILTGKDWKLKGRHALTPRHLQAWLRGLPLESRRPPGLRVIPPPSEQEALQMLKVDHPKIAAWRWGRKIGKLYHSLCPGTLCLILLPGTKRQKLSSLLICCSTHGSLSGLGLMGIKDEEESSTPNMCL", "length": 787, "header": "tr|A0A287A111-1|A0A287A111_PIG Isoform 1 of RNA exonuclease 5 OS=Sus scrofa OX=9823 GN=REXO5 PE=4 SV=2 CANONICAL=A0A287A111-1" }, "isoforms": [ { "isoform_ac": "A0A287A111-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A111/entry#A0A287A111-1", "sequence": { "sequence": "MEPERERTGRAPKRGKKRRRVANQLVGAAEAMRARWDLEERQQPEAKKARLSTILFAENCEITHGQLCELLKYAVLGKSSVPKPSWCQLFHQNHLNNVVVFILQGMSQLHFYRFYLEFGFLRKAFRHKFRLPPPSSDFLADIIGLQRKKKIGDLSKTMEGSLPSVSSKVSISPQNDPIIQKYGSKKVGLTRCLLTKEEMKAYHFPLQGFPDCENFVPTKCNGSITDNSPLFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPDNKIVDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKTILGKDIQCPDRLGHDAIEDARTTLELARYFLKYGPKKIAELNLETVASHQELQAAGQEPRNTAEVVQQLNAGVLECLDSLGQKLLFLTREADASELSSSKTCQTIKCLSNKEVLEQARVEIPLFPFSIVQFSFEPFSPNLTEEMNKRMLIKWTEMSTVYAGPFSKNCNLRALKKLFKSFGPVRSMTLVLETHQPHLCIQYEVLEAAQLAIESLDGILVEGACIKVQRPVTELTLDCDTLVNELEHDSENRGTIYLSGVRETFKEHLLQRSSLFLGLEAVILPKDLKSGKQKKYCFLRFKTFGRAQRALDILTGKDWKLKGRHALTPRHLQAWLRGLPLESRRPPGLRVIPPPSEQEALQMLKVDHPKIAAWRWGRKIGKLYHSLCPGTLCLILLPGTKRQKLSSLLICCSTHGSLSGLGLMGIKDEEESSTPNMCL", "length": 787, "header": "tr|A0A287A111-1|A0A287A111_PIG Isoform 1 of RNA exonuclease 5 OS=Sus scrofa OX=9823 GN=REXO5 PE=4 SV=2 CANONICAL=A0A287A111-1" }, "locus": { "chromosome": "3", "start_pos": 25238531, "end_pos": 25197981, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061328.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061328.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037615.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037615.2" } ] } }, { "isoform_ac": "A0A287ALT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A111/entry#A0A287ALT9-1", "sequence": { "sequence": "MEPERERTGRAPKRGKKRRRVANQLVGAAEAMRARWDLEERQQPEAKKARLSTILFAENCEITHGQLCELLKYAVLGKSSVPKPSWCQLFHQNHLNNVVVFILQGMSQLHFYRFYLEFGFLRKAFRHKFRLPPPSSDFLADIIGLQRKKKIGDLSKTMEGSLPSVSSKVSISPQNDPIIQKYGSKKVGLTRCLLTKEEMKAYHFPLQGFPDCENFVPTKCNGSITDNSPLFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPDNKIVDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKTILGKDIQCPDRLGHDAIEDARTTLELARYFLKYGPKKIAELNLETVASHQELQAAGQEPRNTAEVVQQLNAGVLECLDSLGQKLLFLTREADASELSSSKTCQTIKCLSNKEVLEQARVEIPLFPFSIVQFSFEPFSPNLTEEMNKRMLIKWTEMSTVYAGPFSKNCNLRALKKLFKSFGPVRSMTLVLETHQPHLCIQYEVLEAAQLAIESLDGILVEGACIKVQRPVTELTLDCDTLVNELEHDSENRGTIYLSGVRETFKEHLLQRSSLFLGLEAVILPKDLKSGKQKKYCFLRFKTFGRAQRALDILTGKDWKLKGRHALTPRHLQAWLRGLPLESRRPPGLRVIPPPSEQEALQMLKVDHPKIAAWRWGRKIGKLYHSLCPGTLCLILLPGTKRRP", "length": 752, "header": "tr|A0A287ALT9-1|A0A287ALT9_PIG Computationally mapped isoform of RNA exonuclease 5 OS=Sus scrofa OX=9823 GN=REXO5 PE=4 SV=1 CANONICAL=A0A287A111-1" }, "locus": { "chromosome": "3", "start_pos": 25238531, "end_pos": 25177967, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065117.2", "url": "https://www.ensembl.org/id/ENSSSCT00000065117.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044859.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044859.1" } ] } }, { "isoform_ac": "A0A5G2QBK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A111/entry#A0A5G2QBK1-1", "sequence": { "sequence": "MEPERERTGRAPKRGKKRRRVANQLVGAAEAMRARWDLEERQQPEAKKARLSTILFAENCEITHGQLCELLKYAVLGKSSVPKPSWCQLFHQNHLNNVVVFILQGMSQLHFYRFYLEFGFLRKAFRHKFRLPPPSSDFLADIIGLQRKKKIGDLSKTMEGFPDCENFVPTKCNGSITDNSPLFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPDNKIVDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKTILGKDIQCPDRLGHDAIEDARTTLELARYFLKYGPKKIAELNLETVASHQELQAAGQEPRNTAEVVQQLNAGVLECLDSLGQKLLFLTREADASELSSSKTCQTIKCLSNKEVLEQARVEIPLFPFSIVQFSFEPFSPNLTEEMNKRMLIKWTEMSTVYAGPFSKNCNLRALKKLFKSFGPVRSMTLVLETHQPHLCIQYEVLEAAQLAIESLDGILVEGACIKVQRPVTELTLDCDTLVNELEHDSENRGTIYLSGVRETFKEHLLQRSSLFLGLEAVILPKDLKSGKQKKYCFLRFKTFGRAQRALDILTGKDWKLKGRHALTPRHLQAWLRGLPLESRRPPGLRVIPPPSEQEALQMLKVDHPKIAAWRWGRKIGKLYHSLCPGTLCLILLPGTKSTHGSLSGLGLMGIKDEEESSTPNMCL", "length": 728, "header": "tr|A0A5G2QBK1-1|A0A287A111_PIG Computationally mapped isoform of RNA exonuclease 5 OS=Sus scrofa OX=9823 GN=REXO5 PE=4 SV=1 CANONICAL=A0A287A111-1" }, "locus": { "chromosome": "3", "start_pos": 25238531, "end_pos": 25197981, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071668.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071668.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061439.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061439.1" } ] } }, { "isoform_ac": "A0A5G2QNV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A111/entry#A0A5G2QNV5-1", "sequence": { "sequence": "MEPERERTGRAPKRGKKRRRVANQLVGAAEAMRARWDLEERQQPEAKKARLSTILFAENCEITHGQLCELLKYAVLGKSSVPKPSWCQLFHQNHLNNVVVFILQGMSQLHFYRFYLEFGFLRKAFRHKFRLPPPSSDFLADIIGLQRKKKIGDLSKTMEGSLPSVSSKVSISPQNDPIIQKYGSKKVGLTRCLLTKEEMKAYHFPLQGFPDCENFVPTKCNGSITDNSPLFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPDNKIVDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKTILGKDIQCPDRLGHDAIEDARTTLELARYFLKYGPKKIAELNLETVASHQELQAAGQEPRNTAEVVQQLNAGVLECLDSLGQKLLFLTREADASELSSSKTCQTIKCLSNKEVLEQARVEIPLFPFSIVQFSFEPFSPNLTEEMNKRMLIKWTEMSTVYAGPFSKNCNLRALKKLFKSFGPVRSMTLVLETHQPHLCIQYEVLEAAQLAIESLDGILVEGACIKVQRPVTELTLDCDTLVNELEHDSENRGTIYLSGVRETFKEHLLQRSSLFLGLEAVILPKDLKSGKQKKYCFLRFKTFGRAQRALDILTGKDWKLKGRHALTPRHLQAWLRGLPLESRRPPGLRVIPPPSEQEALQMLKVDHPKIAAWRWGRKIGKLYHSLCPGTLCLILLPGTKRLKDSISFFPEAFWPIFFSELSISFAHVSVLFSILIF", "length": 786, "header": "tr|A0A5G2QNV5-1|A0A287A111_PIG Computationally mapped isoform of RNA exonuclease 5 OS=Sus scrofa OX=9823 GN=REXO5 PE=4 SV=1 CANONICAL=A0A287A111-1" }, "locus": { "chromosome": "3", "start_pos": 25238531, "end_pos": 25193936, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074060.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074060.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066375.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066375.1" } ] } }, { "isoform_ac": "A0A5G2RDB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A111/entry#A0A5G2RDB0-1", "sequence": { "sequence": "MEPERERTGRAPKRGKKRRRVANQLVGAAEAMRARWDLEERQQPEAKKARLSTILFAENCEITHGQLCELLKYAVLGKSSVPKPSWCQLFHQNHLNNVVVFILQGMSQLHFYRFYLEFGFLRKAFRHKFRLPPPSSDFLADIIGLQRKKKIGDLSKTMEGSLPSVSSKVSISPQNDPIIQKYGSKKVGLTRCLLTKEEMKAYHFPLQGFPDCENFVPTKCNGSITDNSPLFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPDNKIVDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKTILGKDIQCPDRLGHDAIEDARTTLELARYFLKYGPKKIAELNLETVASHQELQAAGQEPRNTAEVVQQLNAGVLECLDSLGQKLLFLTREADASELSSSKTCQTIKCLSNKEVLEQARVEIPLFPFSIVQFSFEPFSPNLTEEMNKRMLIKWTEMSTVYAGPFSKNCNLRALKKLFKSFGPVRSMTLVLETHQVQRPVTELTLDCDTLVNELEHDSENRGTIYLSGVRETFKEHLLQRSSLFLGLEAVILPKDLKSGKQKKYCFLRFKTFGRAQRALDILTGKDWKLKGRHALTPRHLQAWLRGLPLESRRPPGLRVIPPPSEQEALQMLKVDHPKIAAWRWGRKIGKLYHSLCPGTLCLILLPGTKSTHGSLSGLGLMGIKDEEESSTPNMCL", "length": 745, "header": "tr|A0A5G2RDB0-1|A0A287A111_PIG Computationally mapped isoform of RNA exonuclease 5 OS=Sus scrofa OX=9823 GN=REXO5 PE=4 SV=1 CANONICAL=A0A287A111-1" }, "locus": { "chromosome": "3", "start_pos": 25238531, "end_pos": 25197981, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089203.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089203.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074472.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074472.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBK1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512042", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512042", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z4K9-1", "protein_name": "RNA exonuclease 5", "gene_name": "REXO5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGLSGGVNGCKRPAGEDAEGLRAGGKRSRAGRREAKEKSSHLCAALLGEDCEISPEQLHELLQYAALGKHHNAAQPSWCHIYHQSRLAGVVVIVLHEMSQLHFYKFYLQFKHLRKVFQHRFTLPPPSANFLASLCGEGSSLNPQGTAQGLISTGAECIPKSSGLQCDPIIRKYGKEKRGLTSYTLTSEELKKNDYPMRDSPGCKGYMYTECDLQRTDSSPLFGLDCEMCLTARGNEVVRVSLVDAEGQCLLNELVKPESVIVNYCTRYSGVTRKMLLPVKTRLPDIQTRLKKILPHDAVLVGHSLNADLQALQMIHPSVIDTSLLFARNEGRRFKLKFLAKAVLGKEIQCEQRLGHDPAEDARAALELAQFFIKKGPVKVAELNLEMLLAAERQTEVLPKKSVMQPQRCGVQKQLNDTPHLSKPCFLACLQGMGQKPLLLGRQELDSSGFCQSDLSASNKQILQRALEDVPLSTFSIIQFSLDPEYVASHRLAGFCEKVRNKLTDMLTIYAGPFEEDFCLKSVKKEFGKCGPIHSLTVVSETYQPYVCIQYGVLEAAQLAVESLNGAEVAGSCIKVQRPITAATLDCDVLIKELELDIENEGVIYVAGIKKSLTETDLQEEFSPLKDLETLFLPKDLQSGKHSTCCFLKFQKSQSAADALEAINGWAVKGSTLRSRHALASGHLWRWIWQMNHSSEKQGGNSLSEKMAPLSDSEQDVKKKVKKLDHHIKKLYRSLQDNTLCVVLFPGTNSIHGSQSGLGMMGIKDDGGSSAC", "length": 773 }, "evidence": [ { "id": "A0A287A111", "url": "https://omabrowser.org/oma/group/A0A287A111/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A1A5R7-1", "protein_name": "RNA exonuclease 5", "gene_name": "Rexo5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELEEEENPRKRKETPNSALTTELDRPSWDVQDPEPQAKKARLSTILFTDNCEVTHRQLCELLKYAILGKSTLPKPSWCQLLHQKQLNNVVVFILKGMSQLHFYRFYLEFRFLRKTFRHKFSLPPPTSSFLFDIIGLQKKKSARGCPRTVEGPLISATLKSSIDLQNDPIIQKYGYKNVSLTRCLLTKEEMKTFHFPLQGSPNCENFILLKYSGFITDSSPLFGLDCEVCLTSMGKELTRISLVAEGGYCLMDELVKPDFKILDYLTSFSGITKEILNPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKIIHPYVIDTSLLYIGKQGRRFKLTFLAKVILGKDIQCPNKLGHDGIEDARTALELVQYFLKYGPKKIAEFNLEALAANQEQGNKEGATHMRSVLECLDSMGQKLLFLTQDIDELSSYRNCQTVKCSSNKEVLEQARVEVPLFPFNIVQFSFRPFPPLFAEEMKNNMKTRWTEMSTIYAGPFSKDCNVGSLKKVFSSLGPVQSITLVLETYRPYFSIQYELLEAAQLAIETMNGTILEGSCIRVHRLLTELTLECDTLVRELEQDSENQGTIYVAGIGETFKEHLLEQSNLFPDLEAVILPKELKSRKQKNYCFLKFKTFNSAQVALEVLKGKDWKLKGRNALTSRHLQAWLKNIHPEPSMPMGLRIVPPLLERHIFRTLKANHPKIVAWRWSRRIEKLYHSLSPGTFCLILLPGTKNTFGSHPGLGLMKIKEEEGGDTLL", "length": 754 }, "evidence": [ { "id": "A0A287A111", "url": "https://omabrowser.org/oma/group/A0A287A111/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3YW29-1", "protein_name": "RNA exonuclease 5", "gene_name": "Rexo5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEQEKEEANSRKRKEAPNSSASATERDGPPSHIQDREPQAKKARLSTILFTDNCEVTHRQLCELLKYAVLGKSAVPKPSWCQLSHQKQLNNVVVFILKGMSQLHFYRFYLEFRFLRKTFRHKFSLPSPTSSFLFDIIGLQKKKSARSFRRTVEGPLISATLRSSIDLQNDPIIQKYGYKNVGLTKCLLTKEEMKTFHFPLPGSPNYENFILTKYTGFITDSSPLFGLDCEVCLTSMGKELTRISLVTEGGYCLIDELVKPDLKILDYLTSFTGITKEILNPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKMIHPYVIDTSLLYAGKQGRRFKLTFLARVILGKDIQCPNKLGRDGIEDARAALELLQYFLKYGPKKIAEFNLEALAANQEQGDKEEAAHMRCVLKCLESMGQKLLFLTQDINELSSYRNCQTIKCSSNKKVLEQARVEVPLFPFNIVEFSFQPFPPLFAEEMKNSMKTKWTQMSTVYAGPFSKDCNVGALKKVFSSLGPVHSITLVLETYRPYFSIQYEVLEAAQLALETMNGSLLEGSCIRVRRLVTELTLECDTLVRELEQDSENQGTIYVAGIGETFKEHLLEQSNLFPDLEAVILPKEVKSRKQKNYCFLKFKTVNSAQVALEILKGKDWKLKGRNALTPRHLQAWLKDIHPEPAMPMGLRIVPPLMERHIFRTRKVNHPKIVAWRWSRKIEKLYHSLSPGTFCLILMPGTKNAFGSHPGLGLMKIKEEEESDTPGVRV", "length": 759 }, "evidence": [ { "id": "A0A287A111", "url": "https://omabrowser.org/oma/group/A0A287A111/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q2T9U5-1", "protein_name": "RNA exonuclease 5", "gene_name": "REXO5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPERKRSGSTLKKGRKRRLIPSKVVGAAEATRSHWDLEEKQQPIAKKARLSTVLFAENCEVTHGQLCELLKYAVLGKSSFPKPSWCQLFHQNHLKNVVVFILQGLSQLHFYKFYLEFGFLRKAFKHKFRMPPPSSDFLADIIGLQKKQIIGNLPKAMEGSLPFASSKVSINLQKDPIIQKYGFKKVGLTRCLLTKEEMKTYHFPLQGFLDCENFVPTKCNGSVTDNSPLFGLDCEMCLTSKGRELTRISLVAEGGGCVMDELVKPDNKIVDYLTSFSGITKKILNPVTTKLKDVQRRLKILLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKAILGKDIQCPDRLGHDATEDARTTLELARYFLKYGPKKIAELNLEALFSYQESQEPRNTAEGVQRLNTSVLECLDSVGQKLLFLTQEADASALSSSKNCQTIKCLSNKEVLEQARVEIPLFPFSIVQFSFEPFSPNLTQEMNKRIKIKWTEMSTVYAGPFNKNCNLSALKRLFKSFGPVQLMTLVLETHQPHLCIQYEVLEAAQLAIESLDGVLVEGSCIKVQRPVTELTLDCDTLVNELEQDSENRGTIYLSGVSETFKEHLLQHCSIFLGLEAMILPKDLKSGKQKGYCFLRFKTFGSAQRALNILTGKDWKLRGRHALTPRHLHAWLRGLARESRLPGVRVIPPPSEQEAWQMLNVDHPKIAAWHWGRKIEKLYHNLCPGTLCLILLPGTKSTHGSLSGLGLMGIKDEEESTIPQTCVCESAHHLPGVIS", "length": 783 }, "evidence": [ { "id": "A0A287A111", "url": "https://omabrowser.org/oma/group/A0A287A111/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q96IC2-1", "protein_name": "RNA exonuclease 5", "gene_name": "REXO5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPEREGTERHPRKVRESRQAPNKLVGAAEAMKAGWDLEESQPEAKKARLSTILFTDNCEVTHDQLCELLKYAVLGKSNVPKPSWCQLFHQNHLNNVVVFVLQGMSQLHFYRFYLEFGCLRKAFRHKFRLPPPSSDFLADVVGLQTEQRAGDLPKTMEGPLPSNAKAAINLQDDPIIQKYGSKKVGLTRCLLTKEEMRTFHFPLQGFPDCENFLLTKCNGSIADNSPLFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQHPNTSVLECLDSVGQKLLFLTRETDAGELPSSRNCQTIKCLSNKEVLEQARVEIPLFPFSIVQFSFKAFSPVLTEEMNKRMRIKWTEISTVYAGPFSKNCNLRALKRLFKSFGPVQSMTFVLETRQPHLCIQYEVLEAAQLAIESLDGILVDGICIKVQRPVTELTLDCDTLVNELEGDSENQGSIYLSGVSETFKEQLLQEPRLFLGLEAVILPKDLKSGKQKKYCFLKFKSFGSAQQALNILTGKDWKLKGRHALTPRHLHAWLRGLPPESTRLPGLRVVPPPFEQEALQTLKLDHPKIAAWRWSRKIGKLYNSLCPGTLCLILLPGTKSTHGSLSGLGLMGIKEEEESAGPGLCS", "length": 774 }, "evidence": [ { "id": "A0A287A111", "url": "https://omabrowser.org/oma/group/A0A287A111/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "rRNA 3'-end processing", "id": "GO:0031125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031125", "evidence": [ { "database": "UniProtKB", "id": "A0A287A111", "url": "https://www.uniprot.org/uniprotkb/A0A287A111" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A287A111", "url": "https://www.uniprot.org/uniprotkb/A0A287A111" } ], "pmid": "" }, { "name": "exonuclease activity", "id": "GO:0004527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004527", "evidence": [ { "database": "UniProtKB", "id": "A0A287A111", "url": "https://www.uniprot.org/uniprotkb/A0A287A111" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A287A111", "url": "https://www.uniprot.org/uniprotkb/A0A287A111" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A111", "url": "https://www.uniprot.org/uniprotkb/A0A287A111" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A287A111", "url": "https://www.uniprot.org/uniprotkb/A0A287A111" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 490, "end_pos": 492, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A111-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 787, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A111-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A111" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A111", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A111" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 507, "end_pos": 581, "start_aa": "Ser", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 221, "end_pos": 223 }, { "start_pos": 490, "end_pos": 492 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A134-1", "uniprot_ac": "A0A287A134", "uniprot_id": "A0A287A134_PIG", "mass": { "chemical_mass": 28809.0, "monoisotopic_mass": 28809.0 }, "refseq": { "ac": "XP_020943064", "name": "retroviral-like aspartic protease 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943064" }, "gene_names": [ { "name": "ASPRV1", "type": "recommended", "evidence": [ { "id": "A0A287A134", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A134" } ] }, { "name": "ASPRV1", "type": "synonym", "evidence": [ { "id": "XP_020943064", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943064" } ] } ], "protein_names": [ { "name": "Retroviral-like aspartic protease 1", "type": "recommended", "evidence": [ { "id": "A0A287A134", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A134/entry#names_and_taxonomy" } ] }, { "name": "Skin-specific retroviral-like aspartic protease", "type": "synonym", "evidence": [ { "id": "A0A287A134", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A134/entry#names_and_taxonomy" } ] }, { "name": "TPA-inducible aspartic proteinase-like protein", "type": "synonym", "evidence": [ { "id": "A0A287A134", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A134/entry#names_and_taxonomy" } ] }, { "name": "retroviral-like aspartic protease 1", "type": "synonym", "evidence": [ { "id": "XP_020943064", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943064" } ] } ], "function": [ { "annotation": "Protease responsible for filaggrin processing, essential for the maintenance of a proper epidermis organization.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A134", "url": "https://www.uniprot.org/uniprotkb/A0A287A134#function" }, { "database": "UniProtKB", "id": "ARBA00053118", "url": "https://www.uniprot.org/uniprotkb/ARBA00053118#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A134", "url": "https://www.uniprot.org/uniprotkb/A0A287A134" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASPRV1", "url": "https://www.uniprot.org/uniprotkb/A0A287A134", "locus": { "chromosome": "3", "start_pos": 72493908, "end_pos": 72493129, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033099", "url": "https://www.ensembl.org/id/ENSSSCG00000033099" } ] } } ], "crossref": [ { "id": "ENSSSCG00000033099", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033099", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00303", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00303", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102163220", "url": "https://www.ncbi.nlm.nih.gov/gene/102163220", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001995", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001995", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033539", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033539", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102163220", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102163220", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR37006", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37006", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37006:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37006:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13975", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13975", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020943064", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943064", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": 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"length": 1222, "header": "tr|A0A287A2Z0-1|A0A287A2Z0_PIG Isoform 1 of Transcriptional regulating factor 1 OS=Sus scrofa OX=9823 GN=TRERF1 PE=4 SV=2 CANONICAL=A0A287A2Z0-1" }, "isoforms": [ { "isoform_ac": "A0A287A1B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z0/entry#A0A287A1B1-1", "sequence": { "sequence": "MGDQQLYKTNHVAHGGENLFYQQPPLGVHGGLNHSYGNTVPGAAMDAPQASPISPHFPQDPRDGLGLPVGSKNLGQVDTSRQGGWGGPAGPGNHVQLRSNLTNSNMMWGAPAQAEPADGFQYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVNNMAQVLHTQSSVMDGAPDSALRQLLSQKPMEPPAPAVPSRYQQVPQQPHPGFTGGLSKPALQVGQHPSQGHLYYDYQQPLAQMPVQGGQSLQAPQMLSPHMQQIQQHQYYPQQQPQPQQQQTGQQRMSMQEMQPPLQPLRPSQPQQQQQQQQQQLQQRQASMQIPQYFQSQPVMQHLQEPQQPQMHLQPPSYHRDPHQYTPEQAHAVQLIQLGSMPQYYYQEPQQPYGHPLYQQSHLPQHQQHEDSQPKTYPSDRQAQAMLSSHGDLGPPDTGMGDPASSDLNRVSSALPHRPLLSPSGIHLNNMGPQHQQLSPSAMWPQMHVPDGRAQPGSPESSGQPKGVFGEQFDAKNKLTCSICLKEFKSLPALNGHMRSHGGMRASPSLKQEEGEKAPPPPPQPQPPLPPPPPPPPQLPAEAEGLTPMVMPVSVPVKLLPPKPSSQGFANSVAAAPSARDKPASSVSDDEMPVLEIPKKHQAGAAKAEDPVKAVPEKKKFRHRPEPLFIPPPPSYHPNPGASHSGATLYQSQLRSPRILGDHLLLDPALELPPYTPPPMLSPVRQGSGLFSNVLISGHGHGPGAHPQLPLTPLTPTPRVLLCRSNSIDGSNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDVSALAQDTHKATLVWKPWPELENHDLQQRVETLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMAALEMLLLRKPLRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLGRKHRTRLSEIIEDCVTSEEEEEVEEEEEDPEEDRKSTREEESELPKSPEPPPGPVLAHAEGPPLPAVGQPSGSFICEMPNCGAVFSSRQALNGHARIHGGTNQVTKARGAVPSGKQKPGSAQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSRNAHMKTHRQQEEQQRQKAQKAAFAAEMAATIERTTGPVGPPGLLPLDQLSLIKPIKDVDILDDDVVQQLGGVMEEAEVVDTGLLLDDQDSVLLQGDTEL", "length": 1202, "header": "tr|A0A287A1B1-1|A0A287A2Z0_PIG Computationally mapped isoform of Transcriptional regulating factor 1 OS=Sus scrofa OX=9823 GN=TRERF1 PE=4 SV=3 CANONICAL=A0A287A2Z0-1" }, "locus": { "chromosome": "7", "start_pos": 37380195, "end_pos": 37337086, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037969.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037969.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037541.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037541.3" } ] } }, { "isoform_ac": "A0A287A2Z0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z0/entry#A0A287A2Z0-1", "sequence": { "sequence": "MGDQQLYKTNHVAHGGENLFYQQPPLGVHGGLNHSYGNTVPGAAMDAPQASPISPHFPQDPRDGLGLPVGSKNLGQVDTSRQGGWGGPAGPGNHVQLRSNLTNSNMMWGAPAQAEPADGFQYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVNNMAQVLHTQSSVMDGAPDSALRQLLSQKPMEPPAPAVPSRYQQVPQQPHPGFTGGLSKPALQVGQHPSQGHLYYDYQQPLAQMPVQGGQSLQAPQMLSPHMQQIQQHQYYPQQQPQPQQQQTGQQRMSMQEMQPPLQPLRPSQPQQQQQQQQQQLQQRQASMQIPQYFQSQPVMQHLQEPQQPQMHLQPPSYHRDPHQYTPEQAHAVQLIQLGSMPQYYYQEPQQPYGHPLYQQSHLPQHQQHEDSQPKTYPSDRQAQAMLSSHGDLGPPDTGMGDPASSDLNRVSSALPHRPLLSPSGIHLNNMGPQHQQLSPSAMWPQMHVPDGRAQPGSPESSGQPKGVFGEQFDAKNKLTCSICLKEFKSLPALNGHMRSHGGMRASPSLKQEEGEKAPPPPPQPQPPLPPPPPPPPQLPAEAEGLTPMVMPVSVPVKLLPPKPSSQGFANSVAAAPSARDKPASSVSDDEMPVLVRMTLSPPHSPQGAAPRPPAEIPKKHQAGAAKAEDPVKAVPEKKKFRHRPEPLFIPPPPSYHPNPGASHSGATLYQSQLRSPRILGDHLLLDPALELPPYTPPPMLSPVRQGSGLFSNVLISGHGHGPGAHPQLPLTPLTPTPRVLLCRSNSIDGSNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDVSALAQDTHKATLVWKPWPELENHDLQQRVETLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMAALEMLLLRKPLRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLGRKHRTRLSEIIEDCVTSEEEEEVEEEEEDPEEDRKSTREEESELPKSPEPPPGPVLAHAEGPPLPAVGQPSGSFICEMPNCGAVFSSRQALNGHARIHGGTNQVTKARGAVPSGKQKPGSAQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSRNAHMKTHRQQEEQQRQKAQKAAFAAEMAATIERTTGPVGPPGLLPLDQLSLIKPIKDVDILDDDVVQQLGGVMEEAEVVDTGLLLDDQDSVLLQGDTEL", "length": 1222, "header": "tr|A0A287A2Z0-1|A0A287A2Z0_PIG Isoform 1 of Transcriptional regulating factor 1 OS=Sus scrofa OX=9823 GN=TRERF1 PE=4 SV=2 CANONICAL=A0A287A2Z0-1" }, "locus": { "chromosome": "7", "start_pos": 37380195, "end_pos": 37337086, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055960.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055960.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038128.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038128.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 790, "start_aa": "Thr", "end_pos": 790, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr790", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1B1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1B1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K2H9-1", "protein_name": "Transcriptional regulating factor 1", "gene_name": "Trerf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDQQLYKTNHVAHGGENLFYQQPPLGVHSGLNHSYGNTISGAGMDAPQASPISPHFPQDTRDGLSLPIGSKNLGQMDASRQGGWGSHAGPGSHVQLRSNLANSNMMWGAPAQVEPTDGYQYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVNNMAQVLHTQSAVMDGASDSALRQLLSQKPVEPSASAIASRYQQVPQQPHPGFTGGLPKPALPVGQHAPQGHLYYDYQQPLAQMSVQGGQPLQAPQVLSSHMQPLQQHQYYPQPPPQQQQAGLQRLSVQEMQQQQQQQIRPSPPQQQQQQQQQQQQQQLQLQQRQSSLQIPQYYQPQPMMQHLQEQQQPSMHLQPPSYHRDPHQYTPEQAHAVQLIQLGSMPQYYYQEPQQPYGHPLYQQSHLSQHLQREDSQLKTYSSDRQTPALLSSHGDMGPSDTGVADPASSEMTRVTSTLPHQPLLSPSGIHLNSMGSQHQQPSPSAMWPQMHLPDGRAQPGSPESSGQTKGVFGEQFDAKNKLTCSICLKEFKSLPALNGHMRSHGGMRASPSLKQEEGEKVPPPQPQPQPQPQPQPQPPLPPQPPPQLPPEAERLTPMVMPVSVPVKLLPPKPSSQGFTNSVAATPSARDKPASSMSDDEMPVLVRMTLSPPHSPQGAAPRAPAEIPRKHPPITAKVEEPLKTPPEKKKFRHRPEPLFIPPPPSSYTPNPTSYSGATLYQSQLRSPRILGDHLLLDPAHELPPYTPPPMLSPVRQGSGLFSNVLISGHGPGVHPQLPLTPLTPTPRVLLCRSSSIDGSNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDVSAMAQDTHKATLVWKPWPELENQALQQQVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMATLETLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLGRKHRTRLAEIIDDCMTSEEEEDAEEEEEDPEEDRKSIKDEESEVPKTPEPPPAPALAPTEGAPMQAGGQPSGSFICEMPNCGADCRCHVAPFLPQVFSSRQALNGHARIHGGTNQVAKTRGAVPSGKQKPGGTQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSRNAHMKTHRQQEEQQRQKAQKAAFAAEMAATIERTTGPVGAPELLPLDQLSLMKPKDVDILDDDMVQQLGVMDEAEVVGTDLLLDNQDSVLLQGDTEL", "length": 1241 }, "evidence": [ { "id": "A0A287A2Z0", "url": "https://omabrowser.org/oma/group/A0A287A2Z0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A9J7F112-1", "protein_name": "Transcriptional-regulating factor 1 isoform X1", "gene_name": "Trerf1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGDQQLYKTNHVAHGGENLFYQQPPLGVHSGLNHSYGNAISGAGMDAPQASPVSPHFPQDTRDSLGLPIGSKNLGQIDTSRQGGWGSHAGPGNHVQLRSNLASSNMMWGAPAQVEPSDGYQYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVNNMAQVLHTQSAVMDGAPDSALRQLLSQKPVEPSASAIASRYQQVPQQPHPGFTGGLPKPALPVGQHAPQGHLYYDYQQPLAQMSMQGGQPLQAPQVLSSHMQPMQQHQYYPQPPPQQQQAGLPRISIQEMQQQPQQQIRPSQPQQQQQQLQLQQRQGSLQIPQYYQPQPMMQHLQEQQQPPMHLQPPSYHRDPHQYPPEQAHAVQLIQLGSMPQYYYQEPQQPYSHPLYQQSHLSQHQQREDSQLKTYSSDRQTPAMLSSHGDMGPPDAGVADPASSEMTRVSSTLPHQPLLSPSGIHLNNMGPPHPQPSPSAMWPQMHLPDGRAQPGSPESSSGQTKGAFGEQFDAKNKLTCSICLKEFKSLPALNGHMRSHGGMRASPSLKQEEGEKAPPPPPQPQPQPPLPPPPPPPPLPPEAERLTPMVMPVSVPVKLLPPKPSSQGFTDSVAATPSARDKPASSMSDDEMPVLVRMTLSPPHSPQGAAPCAPAEIPRKHHPAVTAKVEEPLKTLPEKKKFRHRPEPLFIPPPPSSYTPNPTSYSGATLYQSQLRSPRILGDHLLLDPAHELPPYTPPPMLSPVRQGSGLFSNVLISGHGPGVHPQLPLTPLTPTPRVLLCRSSSIDGSNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDVSALAQDTHKATLVWKPWPELENQALQQQVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMATLEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLGRRHRTRLAEIIDDCMTSEEEEEAEEEEEDPEEDRKSIKEEESEVPKSPEPPPVPALAPTEGPPMQAVGQPSGSFICEMPNCGADCRCHVTPFLPQVFSSRQALNGHARIHGGTNQVTKTRGAVPSGKQKPGGTQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSRNAHMKTHRQQEEQQRQKAQKAAFAAEMAATIERTTGPVGAPELLPLDQLSLMKPVKDVDILDDDVVQQLGAMDEAEVVGTDLLLDDQDSVLLQGDTEL", "length": 1231 }, "evidence": [ { "id": "A0A287A2Z0", "url": "https://omabrowser.org/oma/group/A0A287A2Z0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8BXJ2-1", "protein_name": "Transcriptional-regulating factor 1", "gene_name": "Trerf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGDQQLYKTNHVGHGGENLFYQQPPLGVHSGLGHSYGNTISGAGMDAPQASPISPHFPQDTRDGLGLPIGSKNLGQMDTSRQGGWGSHAGPGNHVQLRSNLANSNMMWGTPTQVEPADGYQYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVNNMAQVLHTQSAVMDGASDSALRQLLSQKPVEPSASAIASRYQQVPQQPHPGFTGGLPKPALPVGQHAPQGHLYYDYQQPLAQMSMQGGQPLQAPQVLSGHMQQLQQHQYYPQPPPQQQQAGLQRISVQEMQQQQQPQQIRPSPPQQQQQLQLQQRQSSLQIPQYYQPQPMMQHLQEQQQPSMHLQPPSYHRDPHQYTPEQAHAVQLIQLGSMPQYYYQEPQQAYSHPLYPQSHLSQHQQREDGQLKTYSSDRQTPAMLSSHGDMGTSDTGVADPASSEMTRVTSTLPHQPLLSPSGIHLNNMGSQHQQPPSPSAMWPQMHLPDGRAQSGSPESSSGQTKGVFGEQFDAKNKLTCSICLKEFKSLPALNGHMRSHGGMRASPSLKQEEGEKAPPPQPQPQPQPQQPLPPPPPPPPPPQLPPEAERLTPMVMPVSVPVKLIPPKPSSQGFTNSVAATPAARDKPASSMSDDEMPVLEIPRKHPPIAAKVEEPLKNLPEKKKFRHRPEPLFIPPPPSSYTPNPTSYSGATLYQSQLRSPRILGDHLLLDPAHELPPYTPPPMLSPVRQGSGLFSNVLISGHGPGVHPQLPLTPLTPTPRVLLCRSSSIDGSNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDVSALAQDTHRATLVWKPWPELENQALQQQVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMATLEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLGRKHRTRLAEIIDDCMTSEEEEEAEEEEEDPEEDRKSIKEEESEVAKSPEPPPAPALAPTEGPPMQAVGQQPSGNFICEMPNCGAVFSSRQALNGHARIHGGTNQVAKTRGAIPSGKQKPGGTQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSRNAHMKTHRQQEEQQRQKAQKAAFAAEMAATIERTTGPVGAPELLPLDQLSLMKPVKDVDILDDDVVQQLGVMDEAEVVGTDLLLDDQDSVLLQGDTEL", "length": 1205 }, "evidence": [ { "id": "A0A287A2Z0", "url": "https://omabrowser.org/oma/group/A0A287A2Z0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Z0", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z0" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Z0", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z0" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Z0", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Z0", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z0" } ], "pmid": "" }, { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Z0", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z0" } ], "pmid": "" }, { "name": "histone deacetylase complex", "id": "GO:0000118", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000118", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Z0", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Z0", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z0" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Z0", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z0" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Z0", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" }, { "start_pos": 786, "end_pos": 788, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], 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OX=9823 GN=FAM228B PE=3 SV=1 CANONICAL=A0A287A1F2-1" }, "locus": { "chromosome": "3", "start_pos": 114576951, "end_pos": 114537395, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037752.2", "url": "https://www.ensembl.org/id/ENSSSCT00000037752.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037552.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037552.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1F2", "url": "https://www.uniprot.org/uniprotkb/A0A287A1F2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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scrofa OX=9823 GN=SGTA PE=1 SV=1 CANONICAL=A0A287A1V6-1" }, "isoforms": [ { "isoform_ac": "A0A287A1V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6/entry#A0A287A1V6-1", "sequence": { "sequence": "MDNKKRLAYAIIRFLHDQLRHGGLSPDAQESLEVAIQCLETAFGVTVEDSDLALPQTLSEIFEAAASGKEVPQDLRSPQQTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPSNAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLKVAELRLREAPSPTGGVGSFDIAGLLNNPSFMSMASNLMNNPQVQQLMSGMISGGHNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIRSRTPSASNDDQQE", "length": 313, "header": "tr|A0A287A1V6-1|A0A287A1V6_PIG Isoform 1 of Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Sus scrofa OX=9823 GN=SGTA PE=1 SV=1 CANONICAL=A0A287A1V6-1" }, "locus": { "chromosome": "2", "start_pos": 75894157, "end_pos": 75886270, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058964.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058964.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037904.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037904.1" } ] } }, { "isoform_ac": "A0A5G2QXK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6/entry#A0A5G2QXK3-1", "sequence": { "sequence": "MDNKKRLAYAIIRFLHDQLRHGGLSPDAQESLEVAIQCLETAFGVTVEDSDLALPQTLSEIFEAALLSLSTSFPCEVPQDLRSPQQTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPSNAVYFCNRYAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLKVAELRLREAPSPTGGVGSFDIAGLLNNPSFMSMLSQCHRVLRGRPEAFLCSAVFSHWTAHERKRNWTCMLRQIFIIIIFFCLHPSLPFCTLMAPRPLSKQSQQAVSADQHPSPSNTPPNLVTKVFSKIFPGWGSLLTAVGEAACGDAVALLPFLQPRPLGLASGLPALPESTLATPALTSSLPATPGPRTRVRA", "length": 401, "header": "tr|A0A5G2QXK3-1|A0A5G2QXK3_PIG Computationally mapped isoform of Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Sus scrofa OX=9823 GN=SGTA PE=1 SV=2 CANONICAL=A0A287A1V6-1" }, "locus": { "chromosome": "2", "start_pos": 75895618, "end_pos": 75886270, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084541.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084541.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066669.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066669.2" } ] } }, { "isoform_ac": "A0A5G2R4Y3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6/entry#A0A5G2R4Y3-1", "sequence": { "sequence": "MDNKKRLAYAIIRFLHDQLRHGGLSPDAQESLEVAIQCLETAFGVTVEDSDLALPQTLSEIFEAALLSLSTSFPCEVPQDLRSPQQTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPSNAVYFCNRYAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLKVAELRLREAPSPTGGVGSFDIAGLLNNPSFMSMCHVLVKGSLCSMSGMISGGHNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIRSRTPSASNDDQQE", "length": 318, "header": "tr|A0A5G2R4Y3-1|A0A287A1V6_PIG Computationally mapped isoform of Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Sus scrofa OX=9823 GN=SGTA PE=1 SV=1 CANONICAL=A0A287A1V6-1" }, "locus": { "chromosome": "2", "start_pos": 75894157, "end_pos": 75886270, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085284.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085284.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069250.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069250.1" } ] } }, { "isoform_ac": "A0A8W4F7X7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6/entry#A0A8W4F7X7-1", "sequence": { "sequence": "MDNKKRLAYAIIRFLHDQLRHGGLSPDAQESLEVAIQCLETAFGVTVEDSDLALPQTLSEIFEAALLSLSTSFPCEVPQDLRSPQQTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPSNAVYFCNRYAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLKVAELRLREAPSPTGGVGSFDIAGLLNNPSFMSMQFAQQMQQQNPELIEQLRSQIRSRTPSASNDDQQE", "length": 275, "header": "tr|A0A8W4F7X7-1|A0A287A1V6_PIG Computationally mapped isoform of Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Sus scrofa OX=9823 GN=SGTA PE=1 SV=1 CANONICAL=A0A287A1V6-1" }, "locus": { "chromosome": "2", "start_pos": 75894157, "end_pos": 75886270, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104098.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104098.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075444.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075444.1" } ] } }, { "isoform_ac": "A0A8W4FI67-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6/entry#A0A8W4FI67-1", "sequence": { "sequence": "MTSSGTGGFHPTPRKAWKEVPQDLRSPQQTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPSNAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLKVAELRLREAPSPTGGVGSFDIAGLLNNPSFMSMASNLMNNPQVQQLMSGMISGGHNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIRSRTPSASNDDQQE", "length": 262, "header": "tr|A0A8W4FI67-1|A0A287A1V6_PIG Computationally mapped isoform of Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Sus scrofa OX=9823 GN=SGTA PE=1 SV=1 CANONICAL=A0A287A1V6-1" }, "locus": { "chromosome": "2", "start_pos": 75894157, "end_pos": 75886316, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105533.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105533.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078918.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078918.1" } ] } }, { "isoform_ac": "F1S8G6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6/entry#F1S8G6-1", "sequence": { "sequence": "MDNKKRLAYAIIRFLHDQLRHGGLSPDAQESLEVAIQCLETAFGVTVEDSDLALPQTLSEIFEAAASGKEVPQDLRSPQQTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPSNAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLKVAELRLREAPSPTGGVGSFDIAGLLNNPSFMSMASNLMNNPQVQQLGQQFAQQMQQQNPELIEQLRSQIRSRTPSASNDDQQE", "length": 283, "header": "tr|F1S8G6-1|A0A287A1V6_PIG Computationally mapped isoform of Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Sus scrofa OX=9823 GN=SGTA PE=1 SV=2 CANONICAL=A0A287A1V6-1" }, "locus": { "chromosome": "2", "start_pos": 75894157, "end_pos": 75886270, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014712.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014712.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014315.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014315.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 213, "start_aa": "Thr", "end_pos": 213, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr213", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 260, "start_aa": "Thr", "end_pos": 260, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr260", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S8G6", "url": "https://www.uniprot.org/uniprotkb/F1S8G6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515997", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515997", "resource": "KEGG Pathway" }, { "id": "R-SSC-9609523", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9609523", "resource": "Reactome", "description": "Insertion of tail-anchored proteins into the endoplasmic reticulum membrane" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7G5B3-1", "protein_name": "Small glutamine-rich tetratricopeptide repeat-containing protein alpha", "gene_name": "Sgta", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDNRKRLAYAIIQFLHGQLRNGGLSPDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPEIFEAAATSKQEMPQDPRGSDRTPPSEEDSAEAERLKTEGNEQMKLENFEAAVHLYGKAIELNPSNAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPENDTYKSNLKIAELKLREAPSPTGGVGSLDIAGLLNNPHFITMASSLMNSPQLQQLMSGMISGGHNPLGTPGSSSSQSDLASLIQAGQQFAQQMQQQNPEFVEQIRSQVVRSRTPSASHEEQQE", "length": 315 }, "evidence": [ { "id": "A0A287A1V6", "url": "https://omabrowser.org/oma/group/A0A287A1V6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O43765-1", "protein_name": "Small glutamine-rich tetratricopeptide repeat-containing protein alpha", "gene_name": "SGTA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPEIFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNNPQIQQLMSGMISGGNNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIRSRTPSASNDDQQE", "length": 313 }, "evidence": [ { "id": "A0A287A1V6", "url": "https://omabrowser.org/oma/group/A0A287A1V6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q32LM2-1", "protein_name": "Small glutamine-rich tetratricopeptide repeat-containing protein alpha", "gene_name": "SGTA", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDNKKRLAYAIIRFLHDQLRHGELSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPEIFEAAAAGKELPPDLRSPQETPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLKVAELRLREAPSPTGGVGSFDIAGLLNNPSFMSMASNLMNNPQVQQLMSGMISGGHNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIRSRTPSASNDDQQE", "length": 313 }, "evidence": [ { "id": "A0A287A1V6", "url": "https://omabrowser.org/oma/group/A0A287A1V6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54VG4-1", "protein_name": "Small glutamine-rich tetratricopeptide repeat-containing protein", "gene_name": "sgt", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MASNKQKLAVSILNFLKVSMKEDAENAESLQVAVECIRDVFGVDENDSTLQVSAPLSEIFDKFIGENNTNTTTTTTTTTTKLSKEELLNQTYSEIPYELLESFKQFITILEQKGAFANEDSCETVIKATKQKFMESKAGEVKAIAEKLKNEGNAKLNEGKHQEALSCYNKAILYDNTNAIYFANRAATYSALQNFEKSIEDCLEAIKRNPNYGKAYTRMGSAYTSLGKFSEAMEAYNKAIELEPNNETFKASLANAERLAAAANNQAPAMPNIPGMPDLGGLDFGSLLSNPAIRGLANNLMSDPKMKEMMDNGDMASLLNNPDLLKMFGNLGKK", "length": 334 }, "evidence": [ { "id": "A0A287A1V6", "url": "https://omabrowser.org/oma/group/A0A287A1V6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BJU0-1", "protein_name": "Small glutamine-rich tetratricopeptide repeat-containing protein alpha", "gene_name": "Sgta", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDNRKRLAYAIIQFLHGQLRHGGLSCDAQESLEVAIQCLETAFGVTLEDSDLALPQTLPEIFEAATSSKQEMPQDPRAPDRTPPSEEDSAEAERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDNDTYKSNLKIAELKLREAPSPTGGVGSLDIAGLLNNPHFITMASSLMNSPQLQQLMSGMISGGHNPLGTPGSSPQQSDLASLIQAGQQFAQQMQQQNPEFVEQIRSQVVRSRTPSASHEEQQE", "length": 315 }, "evidence": [ { "id": "A0A287A1V6", "url": "https://omabrowser.org/oma/group/A0A287A1V6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "post-translational protein targeting to endoplasmic reticulum membrane", "id": "GO:0006620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006620", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6" } ], "pmid": "" }, { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6" } ], "pmid": "" }, { "name": "negative regulation of ubiquitin-dependent protein catabolic process", "id": "GO:2000059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000059", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6" } ], "pmid": "" }, { "name": "tail-anchored membrane protein insertion into ER membrane", "id": "GO:0071816", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071816", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6" } ], "pmid": "" }, { "name": "positive regulation of ERAD pathway", "id": "GO:1904294", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904294", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6" } ], "pmid": "" }, { "name": "positive regulation of ubiquitin-dependent protein catabolic process", "id": "GO:2000060", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000060", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6" } ], "pmid": "" }, { "name": "negative regulation of ERAD pathway", "id": "GO:1904293", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904293", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "molecular adaptor activity", "id": "GO:0060090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060090", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6" } ], "pmid": "" }, { "name": "BAT3 complex binding", "id": "GO:1904288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904288", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V6" } ], "pmid": "" }, { "name": "TRC complex", "id": "GO:0072380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072380", "evidence": [ { "database": "UniProtKB", 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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5696534", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696534" } ] }, { "id": "R-SSC-912685", "name": "UBP43 binds IFNAR2 and prevents JAK1 interaction", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-912685", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-912685" } ] }, { "id": "R-SSC-9758604", "name": "Ubiquitination of IKBKG by TRAF6", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9758604", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9758604" } ] }, { "id": "R-SSC-9761344", "name": "USP18 binds IKBKG within IKK complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. 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"MVKKRLSSSSDTTWRSEVPGGPSKVGTEAPHSAPDSPGSVFLSSEAENGVEEKKKVCRSPTALSPAPSSEAESPDQKRIISLRSKSSFDGASLASEKNDCKTESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSTVDTHQPEQPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD", "length": 447, "header": "tr|A0A287A2B6-1|A0A287A2B6_PIG Isoform 1 of GRAM domain containing 2B OS=Sus scrofa OX=9823 GN=GRAMD2B PE=4 SV=3 CANONICAL=A0A287A2B6-1" }, "isoforms": [ { "isoform_ac": "A0A287A2B6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2B6/entry#A0A287A2B6-1", "sequence": { "sequence": 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Peptide", "id": "ENSSSCP00000057673.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057673.2" } ] } }, { "isoform_ac": "F1RKM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2B6/entry#F1RKM5-1", "sequence": { "sequence": "MNSASSNKGRLPTGLWTIPWTPRAAKQIRSEAENGVEEKKKVCRSPTALSPAPSSEAESPDQKRIISLRSKSSFDGASLASEKNDCKTESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSTVDTHQPEQPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD", "length": 433, "header": "tr|F1RKM5-1|A0A287A2B6_PIG Computationally mapped isoform of GRAM domain containing 2B OS=Sus scrofa OX=9823 GN=GRAMD2B PE=4 SV=3 CANONICAL=A0A287A2B6-1" }, "locus": { "chromosome": "2", "start_pos": 129618482, "end_pos": 129540382, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015563.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015563.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015151.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015151.3" } ] } }, { "isoform_ac": "I3L7Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2B6/entry#I3L7Q2-1", "sequence": { "sequence": "ADKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSTVDTHQPEQPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD", "length": 328, "header": "tr|I3L7Q2-1|A0A287A2B6_PIG Computationally mapped isoform of GRAM domain containing 2B OS=Sus scrofa OX=9823 GN=GRAMD2B PE=4 SV=3 CANONICAL=A0A287A2B6-1" }, "locus": { "chromosome": "2", "start_pos": 129618482, "end_pos": 129589074, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022607.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022607.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020058.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020058.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q2", "url": "https://www.uniprot.org/uniprotkb/I3L7Q2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q5FVG8-1", "protein_name": "GRAM domain-containing protein 2B", "gene_name": "Gramd2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVKKPISSSDEVFKFEIPSSPKSSAGASHSSTDSPSSVFLSSEAENGVEDRKRFSKSPTAQSPTSSVEAESPDQKRSLGLWSKSSFDGSNLLSDKNDCKTESKADSKTERKKSSSSSQYKANMHFHKLFLDVPTEEPLRQSFTCALQKEILYQGKLFVSENWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSICGHLENTSVGNSPNPSSAENSFRADRPSSLRLDFNDEFSDLDGVVQQRRQDLEGYSSSGSQTPESENSRDFHVTESQTVLNVTKGETKPPRTDAHGSRAPDGKAKILPAHGQSETIGILHKMESRKCPTLRHILIFYAIIVCALIISTFYMRYRINTLEERLGSLTSIMDPHSTEQTAPSSLGSQVQLNVEVLCQELTANIVTLEKIQNNLQKLLENGD", "length": 445 }, "evidence": [ { "id": "A0A287A2B6", "url": "https://omabrowser.org/oma/group/A0A287A2B6/", "database": "OMA" } ], "glygen_name": 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"categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A2B7", "url": "https://www.uniprot.org/uniprotkb/A0A287A2B7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2B7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2B7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMT3", "url": "https://www.uniprot.org/uniprotkb/F1RMT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMT3-1", "url": "https://www.uniprot.org/uniprotkb/F1RMT3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RIEDLLSAYNQSFNSCGTSHFRPNTVQEVGLSCLFPKELSVWQTWQQSTRELTRCQDSMKQFQGNISQLQKQGDSPCQVWAGIPIQTSEDENCVLTHIDDSNYIKNQEFPSWRAQHSWRKLYLTESHNHPCRCQQISMKNNVCKSAISWLSHHSDNLGVPRTEKNYSCHDCGEDIMKVSLLNEDLIQTGQKPYPRNEYRSAFSNDSGSEVHQQLHLEGKPDAYSPCGKDCGYSCVLYIHQSVHRGGDCVLGSSHLQPPQEGPAEEKPCKREHGDLHQRSSPDAYELTHTGEAPCRCNTYEKAFRHRLDLPSTCRVHTEEEPQEFEENGNVFNPSSCLQAHQKIHTEEKVYTDVECETGCICDPDGNIQHRECGNGFSLASRFQDLHIVHTREEPYKHYACGNSFSQNSYLQDHQKIHIREKTYKEYGNGFNWNSKHKDHQRVHTGEKPYKCNTCGKGFSHRSVLNVHQRRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCGECDKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVHTGERPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHRRGHTGGKPYKCEVCTKGFSESSRLQAHQRVHTEGRPYKCEQCGKGFSGFSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGETPYTCDACGKGFRWSSGLLIHQRVHSDDKFYKSEEYSQAYPSSEDPYRKEVL", "length": 807, "header": "tr|A0A287A2B7-1|A0A287A2B7_PIG Isoform 1 of Zinc finger protein 112 OS=Sus scrofa OX=9823 GN=ZNF112 PE=3 SV=2 CANONICAL=A0A287A2B7-1" }, "isoforms": [ { 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Isoform 1 of Zinc finger protein 112 OS=Sus scrofa OX=9823 GN=ZNF112 PE=3 SV=2 CANONICAL=A0A287A2B7-1" }, "locus": { "chromosome": "6", "start_pos": 50919043, "end_pos": 50915624, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041388.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041388.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038061.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038061.2" } ] } }, { "isoform_ac": "F1RMT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2B7/entry#F1RMT3-1", "sequence": { "sequence": 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"database": "Ensembl Peptide", "id": "ENSSSCP00000003331.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003331.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMT3", "url": "https://www.uniprot.org/uniprotkb/F1RMT3" } ], "reference": [ { "type": 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"MAGPPALPPPETAAAATTAAATSSSAASPHYQEWILDTIDSLRSRKARPDLERICRMVRRRHGPEPERTRAELEKLIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGGPAAAAAPPPTPAPPPPPAPVSAAAPARAPRAAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPVPAAPPAAAPPAGPRRAPPPAVAPPAPPQQQQPPPPQPQQPPEGGAARAGGPARPVSLREVVRYLGGSGGAGGRLTRGRVQGLLEEEAAARGRLERTRLGAPVVPRGDRPGRAPPAASARASRSKRGGEERVLEKEEEEEDDEDEDDEDEVSEGSEVPEGDRPAGAQHHQLNGERGPQSAKERVKEWTPCGPHQGQDEGRGPAPGSGTRQVFSMATMNKEGGSASSATGPDSPSPVPLPPGKPALPGADGTPFGCPSGRKEKPSDPVEWTVTDVVEYFTEAGFPEQATAFQEQEIDGKSLLLMQRTDVLTGLSIRLGPALKIYEHHIKVLQQGHFEDEDPDGFLG", "length": 526, "header": "tr|A0A287A2N4-1|A0A287A2N4_PIG Isoform 1 of Sterile alpha motif domain containing 1 OS=Sus scrofa OX=9823 GN=SAMD1 PE=4 SV=3 CANONICAL=A0A287A2N4-1" }, "isoforms": [ { "isoform_ac": "A0A287A2N4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2N4/entry#A0A287A2N4-1", "sequence": { "sequence": "MAGPPALPPPETAAAATTAAATSSSAASPHYQEWILDTIDSLRSRKARPDLERICRMVRRRHGPEPERTRAELEKLIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGGPAAAAAPPPTPAPPPPPAPVSAAAPARAPRAAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPVPAAPPAAAPPAGPRRAPPPAVAPPAPPQQQQPPPPQPQQPPEGGAARAGGPARPVSLREVVRYLGGSGGAGGRLTRGRVQGLLEEEAAARGRLERTRLGAPVVPRGDRPGRAPPAASARASRSKRGGEERVLEKEEEEEDDEDEDDEDEVSEGSEVPEGDRPAGAQHHQLNGERGPQSAKERVKEWTPCGPHQGQDEGRGPAPGSGTRQVFSMATMNKEGGSASSATGPDSPSPVPLPPGKPALPGADGTPFGCPSGRKEKPSDPVEWTVTDVVEYFTEAGFPEQATAFQEQEIDGKSLLLMQRTDVLTGLSIRLGPALKIYEHHIKVLQQGHFEDEDPDGFLG", "length": 526, "header": "tr|A0A287A2N4-1|A0A287A2N4_PIG Isoform 1 of Sterile alpha motif domain containing 1 OS=Sus scrofa OX=9823 GN=SAMD1 PE=4 SV=3 CANONICAL=A0A287A2N4-1" }, "locus": { "chromosome": "2", "start_pos": 65099222, "end_pos": 65096877, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041571.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041571.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038179.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038179.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 128, "start_aa": "Thr", "end_pos": 128, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr128", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2N4", "url": "https://www.uniprot.org/uniprotkb/A0A287A2N4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2N4", "url": "https://www.uniprot.org/uniprotkb/A0A287A2N4" } ], "pmid": "" }, { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2N4", "url": "https://www.uniprot.org/uniprotkb/A0A287A2N4" } ], "pmid": "" }, { "name": "foam cell differentiation", "id": "GO:0090077", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090077", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2N4", "url": "https://www.uniprot.org/uniprotkb/A0A287A2N4" } ], "pmid": "" }, { "name": "lipoprotein lipid oxidation", "id": "GO:0034439", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034439", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2N4", "url": "https://www.uniprot.org/uniprotkb/A0A287A2N4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2N4", "url": "https://www.uniprot.org/uniprotkb/A0A287A2N4" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2N4", "url": "https://www.uniprot.org/uniprotkb/A0A287A2N4" } ], "pmid": "" }, { "name": "low-density lipoprotein particle binding", "id": "GO:0030169", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030169", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2N4", "url": "https://www.uniprot.org/uniprotkb/A0A287A2N4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2N4", "url": "https://www.uniprot.org/uniprotkb/A0A287A2N4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2N4", "url": "https://www.uniprot.org/uniprotkb/A0A287A2N4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A2N4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 526, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A2N4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A2N4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A2N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A2N4" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 450, "end_pos": 498, "start_aa": "Trp", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287A2N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A2N4" }, { "id": "PS52014", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52014" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAMD1-like winged helix (WH)", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 99, "start_aa": "Ser", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 128 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A2P1-1", "uniprot_ac": "A0A287A2P1", "uniprot_id": "A0A287A2P1_PIG", "mass": { "chemical_mass": 173777.0, "monoisotopic_mass": 173777.0 }, "refseq": {}, "gene_names": [ { "name": "CROCC2", "type": "recommended", "evidence": [ { "id": "A0A287A2P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P1" } ] } ], "protein_names": [ { "name": "Ciliary rootlet coiled-coil, rootletin family member 2", "type": "synonym", "evidence": [ { "id": "A0A287A2P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A2P1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CROCC2", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P1", "locus": { "chromosome": "15", "start_pos": 139811999, "end_pos": 139766414, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036261", "url": "https://www.ensembl.org/id/ENSSSCG00000036261" } ] } } ], "crossref": [ { "id": "ENSSSCG00000036261", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036261", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR055167", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055167", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23159", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23159", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23159:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23159:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15035", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15035", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A2P1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "QPAAPSEPAQRPLCVFQRLEDTVLSPAASREDRTLTVRGGGWRASPTPVPARIREIVAGSLGEEPPPGPAGPNPSPCSARPPPLLGNPEEPLHPSLGGAIATLPLGLEAASQVVTVSLQLQARLETTEARLRRSELEHSVDLEEALGRLEAAEQRSTGLSQVNSLLREQLEHMKKANDRLAQELARTTGSVLRLRGELELREAQRWTQREMRRAGLGEPQGVLLRRQVTALRGHLAELRAATEKDLADMRAEAARSARRLHMACLNLGSNLRLTASSTAGALEQQLRDKVREMLQLQGRWDAEKVALQARLSEQTLLVQKLTEQNANKDRSISSLRTDVQKLVRGAGRRCGHLELGCSRSAEGHLRARYAPRDCVPSGACSPATLDPALPACRRRHPTLGQELRLQLESSEATAAGLQERMSESQRELRALRRLLREQAQEHQALLGRLEAQSQEAQRCRVSSELLGRLILGAGVPSETAAPTPPADMPTASPHPPLEGAAGAHPACWVLQGRLEQLEEKVSGLKKELVSAQEALSTAQLQRDLLESEREGLRIALARAESSKADLELLVTRLKAEGVEQRDSLAKMAGLMEGLAQDKGSLNHLVLQLEQEQDELREQQKALERERAGAREQLAQAEQQLELVRAERRGLQQACGHLEERLERLEGQATRLQRERVQLQEQVGQVTCKKQALEEQLAQSLQDQEAQMDTLQRALQEKEALSDERAQLLAKQEDLQRQGQLKAEEAADLRAERDSLESSLFEAQQLVSQLQAQQEQLEREAQSARLARQALQVEMEQLKSAWEVQETKLQWDVGRLRREVAQQEHDTQLALESQALAHREDLAQLQREKETLSLFLTEEKEAAARRLEQEKELVAKYAAERKALEEEIQSLKHEQDESLLQMEHGTQQALSLKESEVSQLREALSRATRELELGHQEAQSRQDQAEATISATAAELKVLQAQFEDAISAHQREARALSETLRETAAERSKVEREAERLRAQLDEAQAGLAALRRELQGSEESCEGLRREALEACRALSDEAREKDVLQDSNTELRAAIRRAEQERASFQRSKEEKEQKMLVLEEARAAAQKEAGELRASLREAERAGADARRELQALRRRVVRLQARGAQDAQQRQQSRQEALELQRLAVEAEAAREGAQREVLRLQRMLTEVEAEGEAREKQLEERLGKSRGAEQSLRAELHGVTRKLQQASGVADGLQARLDQACRRVCSLEQELAQAEGARRGAEGQLGRLWSTLRLGLGLRAQSPSASPERPGSPTKGSDGCQGRPGRQSASPTRSRSPLRWPSPAPGDCSAEAAVRDALRDFARKLRDAQRERDAWRFHAGSLSRRLGEAESERARAQSRAEQLQRALAEAEEGWRQAEGEASRAQATGALQQEVLQRLETERLAGVRAAAQEKRRLQEHVDTLRQALDESKRHGQGLAQQGQLLEEQVAGLQRRCLEAEGVREPLRQVRALEGGPCVPFRNRPGAGAEGRRRCWSVGRHNRGQEQCTPRAGSRHRRCPNTRWGQDREAAKEAKATQDRPRAAQGWAGGQGGPAVPDSDS", "length": 1564, "header": "tr|A0A287A2P1-1|A0A287A2P1_PIG Isoform 1 of Ciliary rootlet coiled-coil, rootletin family member 2 OS=Sus scrofa OX=9823 GN=CROCC2 PE=4 SV=3 CANONICAL=A0A287A2P1-1" }, "isoforms": [ { "isoform_ac": "A0A287A2P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P1/entry#A0A287A2P1-1", "sequence": { "sequence": "QPAAPSEPAQRPLCVFQRLEDTVLSPAASREDRTLTVRGGGWRASPTPVPARIREIVAGSLGEEPPPGPAGPNPSPCSARPPPLLGNPEEPLHPSLGGAIATLPLGLEAASQVVTVSLQLQARLETTEARLRRSELEHSVDLEEALGRLEAAEQRSTGLSQVNSLLREQLEHMKKANDRLAQELARTTGSVLRLRGELELREAQRWTQREMRRAGLGEPQGVLLRRQVTALRGHLAELRAATEKDLADMRAEAARSARRLHMACLNLGSNLRLTASSTAGALEQQLRDKVREMLQLQGRWDAEKVALQARLSEQTLLVQKLTEQNANKDRSISSLRTDVQKLVRGAGRRCGHLELGCSRSAEGHLRARYAPRDCVPSGACSPATLDPALPACRRRHPTLGQELRLQLESSEATAAGLQERMSESQRELRALRRLLREQAQEHQALLGRLEAQSQEAQRCRVSSELLGRLILGAGVPSETAAPTPPADMPTASPHPPLEGAAGAHPACWVLQGRLEQLEEKVSGLKKELVSAQEALSTAQLQRDLLESEREGLRIALARAESSKADLELLVTRLKAEGVEQRDSLAKMAGLMEGLAQDKGSLNHLVLQLEQEQDELREQQKALERERAGAREQLAQAEQQLELVRAERRGLQQACGHLEERLERLEGQATRLQRERVQLQEQVGQVTCKKQALEEQLAQSLQDQEAQMDTLQRALQEKEALSDERAQLLAKQEDLQRQGQLKAEEAADLRAERDSLESSLFEAQQLVSQLQAQQEQLEREAQSARLARQALQVEMEQLKSAWEVQETKLQWDVGRLRREVAQQEHDTQLALESQALAHREDLAQLQREKETLSLFLTEEKEAAARRLEQEKELVAKYAAERKALEEEIQSLKHEQDESLLQMEHGTQQALSLKESEVSQLREALSRATRELELGHQEAQSRQDQAEATISATAAELKVLQAQFEDAISAHQREARALSETLRETAAERSKVEREAERLRAQLDEAQAGLAALRRELQGSEESCEGLRREALEACRALSDEAREKDVLQDSNTELRAAIRRAEQERASFQRSKEEKEQKMLVLEEARAAAQKEAGELRASLREAERAGADARRELQALRRRVVRLQARGAQDAQQRQQSRQEALELQRLAVEAEAAREGAQREVLRLQRMLTEVEAEGEAREKQLEERLGKSRGAEQSLRAELHGVTRKLQQASGVADGLQARLDQACRRVCSLEQELAQAEGARRGAEGQLGRLWSTLRLGLGLRAQSPSASPERPGSPTKGSDGCQGRPGRQSASPTRSRSPLRWPSPAPGDCSAEAAVRDALRDFARKLRDAQRERDAWRFHAGSLSRRLGEAESERARAQSRAEQLQRALAEAEEGWRQAEGEASRAQATGALQQEVLQRLETERLAGVRAAAQEKRRLQEHVDTLRQALDESKRHGQGLAQQGQLLEEQVAGLQRRCLEAEGVREPLRQVRALEGGPCVPFRNRPGAGAEGRRRCWSVGRHNRGQEQCTPRAGSRHRRCPNTRWGQDREAAKEAKATQDRPRAAQGWAGGQGGPAVPDSDS", 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{ "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 483, "start_aa": "Thr", "end_pos": 483, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr483", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren 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"ssc:110255222", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255222", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BA69-1", "protein_name": "Zinc finger protein 296", "gene_name": "ZNF296", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRRKAGCMPRRIEPPPAASSDDEMEMRDLVIDVKPEPDPRPLQAPGLGPFTPKEVPAPERFESEPRHCAGPVSTGGLIHALGLRNQWTPLSLSPHDRQPWTDKHPDLLTCGRCMQTFPLEAITAFVDHKKLGCQLFRGPSPCQGSEHEDLKALNCLRCGRQFTGAWKLLRHAQWDHGLSIYQTEPESPEAPLLGLAEVAVAVSAVSSVVGPEAEVKGSRVGPTRRSPTCPVCKKTLSSFSNLKVHMRSHTGERPYACDQCPYACAQSSKLNRHKKTHRQLQPQSPCLADTGQEQASTAPPEPAAHAAAPASVLPCRGGEGAGAAATAGVQEPGAPGGGAQVGPGGDSWGADTKERRTDQEKNQKMSPKKTLKPAGKNRGPGPGGSCEFCGKHFTNSSNLTVHRRSHTGERPYACELCSYACAQSSKLNRHRRMHGLGPGGPRFACPHCCVPFGLRATLDKHLRQKHPEMAGEA", "length": 474 }, "evidence": [ { "id": "A0A287A2P2", "url": "https://omabrowser.org/oma/group/A0A287A2P2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E9Q6W4-1", "protein_name": "Zinc finger protein 296", "gene_name": "Znf296", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSRRKAGRVPRRVDPDTDTDIEMPDLVMDVKPDLDLRSLAQGPWIARDMPISDVKRQLQTASRPLGAPSTCAPRMPLSSKSSDRQPWTDKHPDLLTCGRCGKIFPLGAIIAFMDHKKQGCQLLQVSDPISESKELKALSCLQCGRQYTSPWKLLCHAQWDHGLCIYQTQHLDTPEAPLLGLAEVAAAMSAVAVVAPVESKPPPVSSAARRSPTCDVCKKTLSSFSNLKVHMRSHTGERPYSCDQCSYACAQSSKLNRHKKTHRQLAPGSPSTSASSRGVSPAAPPEPAAYAAAPASTLPSQTVEKAGAAATAGVQEPGAPGSGAQGGPGFVGWGAPAKVERTDPVKIEKTAPRKSHGPGGKCEFCGKSFTNSSNLTVHRRSHTGERPYTCDQCPYACAQSSKLNRHRRTHGLGTGKTVKCPHCLVPFGLQATLDKHLRQKHPEMA", "length": 445 }, "evidence": [ { "id": "A0A287A2P2", "url": "https://omabrowser.org/oma/group/A0A287A2P2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3W4-1", "protein_name": "Zinc finger protein 296", "gene_name": "Zfp296", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSTTSRLGDEGLHPEPQAGRVPRRVDPEPNDDMEMPDLIIDVKPDRDLGSLAQGPWSARDVPMPGLFDVERRLQTASRPLGAPSTCAPWMPLSSMSSDRQPWTDKHPDLLTCGRCGKIFPLGSITAFMDHKKQGCQLRQISDPISESKELKALSCLQCGRQYTSAWKLLCHAQWDHGLCIYQTQQLETPEAPLLGLAEVAAAMSAVAVVGPVEDKPPSVSSAARRSPTCFVCKKTLSSFSNLKVHMRSHTGERPYSCDQCSYSCAQSSKLNRHKKTHRQPTPGSPSTSASSREVSPAAPPEPAAYAAAPASTPPCQNVEKAGAAATAGIQEPGAPGSGAQESPGFGGCGATAKVERTDSVKMEKTTPRKSHRAGGKCEFCGKSFTNSSNLTVHRRSHTGERPYTCDQCSYACAQSSKLNRHRRTHGLGTGKTVYKCPHCLVPFVLQATLDKHLRQKHPEMA", "length": 461 }, "evidence": [ { "id": "A0A287A2P2", "url": "https://omabrowser.org/oma/group/A0A287A2P2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8WUU4-1", "protein_name": "Zinc finger protein 296", "gene_name": "ZNF296", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRRKAGSAPRRVEPAPAANPDDEMEMQDLVIELKPEPDAQPQQAPRLGPFSPKEVSSAGRFGGEPHHSPGPMPAGAALLALGPRNPWTLWTPLTPNYPDRQPWTDKHPDLLTCGRCLQTFPLEAITAFMDHKKLGCQLFRGPSRGQGSEREELKALSCLRCGKQFTVAWKLLRHAQWDHGLSIYQTESEAPEAPLLGLAEVAAAVSAVVGPAAEAKSPRASGSGLTRRSPTCPVCKKTLSSFSNLKVHMRSHTGERPYACDQCPYACAQSSKLNRHKKTHRQVPPQSPLMADTSQEQASAAPPEPAVHAAAPTSTLPCSGGEGAGAAATAGVQEPGAPGSGAQAGPGGDTWGAITTEQRTDPANSQKASPKKMPKSGGKSRGPGGSCEFCGKHFTNSSNLTVHRRSHTGERPYTCEFCNYACAQSSKLNRHRRMHGMTPGSTRFECPHCHVPFGLRATLDKHLRQKHPEAAGEA", "length": 475 }, "evidence": [ { "id": "A0A287A2P2", "url": "https://omabrowser.org/oma/group/A0A287A2P2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2P2", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P2" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2P2", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P2" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2P2", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2P2", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2P2", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P2" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2P2", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P2" } ], "pmid": "" }, { "name": "negative regulation of dendrite development", "id": "GO:2000171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000171", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2P2", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 396, "end_pos": 398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A2Q1-1", "uniprot_ac": "A0A287A2Q1", "uniprot_id": "A0A287A2Q1_PIG", "mass": { "chemical_mass": 161512.0, "monoisotopic_mass": 161512.0 }, "refseq": {}, "gene_names": [ { "name": "VPS8", "type": "recommended", "evidence": [ { "id": "A0A287A2Q1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1" } ] } ], "protein_names": [ { "name": "Vacuolar protein sorting-associated protein 8 homolog", "type": "recommended", "evidence": [ { "id": "A0A287A2Q1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays a role in vesicle-mediated protein trafficking of the endocytic membrane transport pathway. Believed to act as a component of the putative CORVET endosomal tethering complexes which is proposed to be involved in the Rab5-to-Rab7 endosome conversion probably implicating MON1A/B, and via binding SNAREs and SNARE complexes to mediate tethering and docking events during SNARE-mediated membrane fusion. The CORVET complex is proposed to function as a Rab5 effector to mediate early endosome fusion probably in specific endosome subpopulations. Functions predominantly in APPL1-containing endosomes.", "evidence": [ { "database": "UniProtKB", "id": "I3LRZ6", "url": "https://www.uniprot.org/uniprotkb/I3LRZ6#function" }, { "database": "UniProtKB", "id": "ARBA00059958", "url": "https://www.uniprot.org/uniprotkb/ARBA00059958#function" }, { "database": "UniProtKB", "id": "A0A287A2Q1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1#function" }, { "database": "UniProtKB", "id": "A0A287BMR3", "url": "https://www.uniprot.org/uniprotkb/A0A287BMR3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Q1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VPS8", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1", "locus": { "chromosome": "13", "start_pos": 122950420, "end_pos": 122693760, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011788", "url": "https://www.ensembl.org/id/ENSSSCG00000011788" } ] } } ], "crossref": [ { "id": "A0A287A2Q1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A2Q1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011788", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011788", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16687", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16687", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12616:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12616:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12816", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12816", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23410", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23410", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A2Q1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2Q1-1", "url": 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"length": 1427, "header": "tr|A0A287A2Q1-1|A0A287A2Q1_PIG Isoform 1 of Vacuolar protein sorting-associated protein 8 homolog OS=Sus scrofa OX=9823 GN=VPS8 PE=3 SV=3 CANONICAL=A0A287A2Q1-1" }, "isoforms": [ { "isoform_ac": "A0A287A2Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1/entry#A0A287A2Q1-1", "sequence": { "sequence": "MENEPDHENVEQSFCAKTTDEELNKSFNLEASLSKFSYIDLDKELEFKNDLIDDKEFDIPQVDTPPTLESILNETDDEDESFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKKKLPDSFSLHGSVMRHSLLKGISAQIVSAADKVNAGLPTAIAVSSLIAVGTSHGLALIFGKYQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVHNYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTIVLLDSVEKLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGGQIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDATKRKAIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQVYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLLVHFQDKKLMENVEALIVHMDITSLDIQQMVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSTEASSEEEIYPYVRTLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEKAEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAMDHIEELVSLKPCKAAELVATHFSEQIETVIKKLQNQVLLFKFLRSLLDPREGVHVNQELLQVSPCITEQYIELLCQFSPNQVIETLQVLECYRLDETIQISQKYQLHEVTAYLLEKKGDIHGAFLIMLKRLQSKLQEIIHQDENAKDVPSLKDVEETMVETIALCQRNSHNLNQQQREALWFPLLEAMMAPQKLSSSAAPHLHSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYGKGKLGEIQGLILGMLDTFNYETLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICLQQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTVEIEGQTRWTCYKCSSSNKVGKLSENSSEIKKGRITPSQVKMSPSCHPSKGDPTVKKAISEPVLDPQQIQAFDQLCHLYRGSSRLALLTELSQNRSGESCRPFGGSQSGPAFNSIFQKENFQLQLIPPPVTED", "length": 1427, "header": "tr|A0A287A2Q1-1|A0A287A2Q1_PIG Isoform 1 of Vacuolar protein sorting-associated protein 8 homolog OS=Sus scrofa OX=9823 GN=VPS8 PE=3 SV=3 CANONICAL=A0A287A2Q1-1" }, "locus": { "chromosome": "13", "start_pos": 122949940, "end_pos": 122703268, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058657.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058657.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038008.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038008.3" } ] } }, { "isoform_ac": "A0A287BMR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1/entry#A0A287BMR3-1", "sequence": { "sequence": "MENEPDHENVEQSFCAKTTDEELNKSFNLEASLSKFSYIDLDKELEFKNDLIDDKEFDIPQVDTPPTLESILNETDDEDESFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKKKLPDSFSLHGSVMRHSLLKGISAQIVSAADKVNAGLPTAIAVSSLIAVGTSHGLALIFDQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVHNYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTIVLLDSVEKLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGGQIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDATKRKAIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQMVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSTEASSEEEIYPYVRTLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEKAEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAMDHIEELVSLKPCKAAELVATHFSEQIETVIKKLQNQVLLFKFLRSLLDPREGVHVNQELLQVSPCITEQYIELLCQFSPNQVIETLQVLECYRLDETIQISQKYQLHEVTAYLLEKKGDIHGAFLIMLKRLQSKLQEIIHQDENAKDVPSLKDVEETMVETIALCQRNSHNLNQQQREALWFPLLEAMMAPQKLSSSAAPHLHSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYGKGKLGEIQGLILGMLDTFNYETLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICLQQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTVEIEGQTRWTCYKCSSSNKVGKLSENSSEIKKGRITPSQVKMSPSCHPSKGDPTVKKAISEPVLDPQQIQAFDQLCHLYRGSSRLALLTELSQNRSGESCRPFGGSQSGPAFNSIFQKENFQLQLIPPPVTED", "length": 1335, "header": "tr|A0A287BMR3-1|A0A287BMR3_PIG Computationally mapped isoform of Vacuolar protein sorting-associated protein 8 homolog OS=Sus scrofa OX=9823 GN=VPS8 PE=3 SV=2 CANONICAL=A0A287A2Q1-1" }, "locus": { "chromosome": "13", "start_pos": 122949940, "end_pos": 122703268, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064248.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064248.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057362.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057362.2" } ] } }, { "isoform_ac": "A0A5G2RIH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1/entry#A0A5G2RIH7-1", "sequence": { "sequence": "MENEPDHENVEQSFCAKTTDEELNKSFNLEASLSKFSYIDLDKELEFKNDLIDDKEFDIPQVDTPPTLESILNETDDEDESFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKKKLPDSFSLHGSVMRHSLLKGISAQIVSAANKAQHFSWPEA", "length": 160, "header": "tr|A0A5G2RIH7-1|A0A287A2Q1_PIG Computationally mapped isoform of Vacuolar protein sorting-associated protein 8 homolog OS=Sus scrofa OX=9823 GN=VPS8 PE=3 SV=1 CANONICAL=A0A287A2Q1-1" }, "locus": { "chromosome": "13", "start_pos": 122712760, "end_pos": 122703268, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080541.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080541.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071397.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071397.1" } ] } }, { "isoform_ac": "I3LRZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1/entry#I3LRZ6-1", "sequence": { "sequence": "MENEPDHENVEQSFCAKTTDEELNKSFNLEASLSKFSYIDLDKELEFKNDLIDDKEFDIPQVDTPPTLESILNETDDEDESFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKKKLPDSFSLHGSVMRHSLLKGISAQIVSAADKVNAGLPTAIAVSSLIAVGTSHGLALIFGKDQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVHNYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTIVLLDSVEKLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGGQIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDATKRKAIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQVYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLLVHFQDKKLMENVEALIVHMDITSLDIQQMVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSTEASSEEEIYPYVRTLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEKAEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAMDHIEELVSLKPCKAAELVATHFSEQIETVIKKLQNQVLLFKFLRSLLDPREGVHVNQELLQVSPCITEQYIELLCQFSPNQVIETLQVLECYRLDETIQISQKYQLHEVTAYLLEKKGDIHGAFLIMLKRLQSKLQEIIHQDENAKDVPSLKDVEETMVETIALCQRNSHNLNQQQREALWFPLLEAMMAPQKLSSSAAPHLHSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYGKGKLGEIQGLILGMLDTFNYETLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICLQQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTVEIEGQTRWTCYKCSSSNKVGKLSENSSEIKKGRITPSQVKMSPSCHPSKGDPTVKKAISEPVLDPQQIQAFDQLCHLYRGSSRLALLTELSQNRSGESCRPFGGSQSGPAFNSIFQKENFQLQLIPPPVTED", "length": 1427, "header": "tr|I3LRZ6-1|A0A287A2Q1_PIG Computationally mapped isoform of Vacuolar protein sorting-associated protein 8 homolog OS=Sus scrofa OX=9823 GN=VPS8 PE=3 SV=3 CANONICAL=A0A287A2Q1-1" }, "locus": { "chromosome": "13", "start_pos": 122949940, "end_pos": 122703268, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024055.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024055.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026887.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026887.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1247, "start_aa": "Thr", "end_pos": 1247, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1247", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LRZ6", "url": "https://www.uniprot.org/uniprotkb/I3LRZ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Q1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1" } ], "pmid": "" }, { "name": "late endosome", "id": "GO:0005770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005770", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Q1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1" } ], "pmid": "" }, { "name": "CORVET complex", "id": "GO:0033263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033263", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Q1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1" } ], "pmid": "" }, { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Q1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Q1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1" } ], "pmid": "" }, { "name": "protein-membrane adaptor activity", "id": "GO:0043495", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043495", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Q1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endosomal vesicle fusion", "id": "GO:0034058", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034058", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Q1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1" } ], "pmid": "" }, { "name": "protein targeting to vacuole", "id": "GO:0006623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006623", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Q1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1320, "end_pos": 1322, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1388, "end_pos": 1390, "annotation": "n_glycosylation_sequon" }, { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" }, { "start_pos": 448, "end_pos": 450, "annotation": "n_glycosylation_sequon" }, { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" }, { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" }, { "start_pos": 852, "end_pos": 854, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A2Q1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1427, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A2Q1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A2Q1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A2Q1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Q1" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 1257, "end_pos": 1309, "start_aa": "Cys", "end_aa": "Ser", "glycosite_overlap": "" } ], 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"Protein Classification", "Other" ] }, { "id": "A0A287A2V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A2V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2V6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B1V3", "url": "https://www.uniprot.org/uniprotkb/A0A287B1V3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B1V3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B1V3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJH7", "url": "https://www.uniprot.org/uniprotkb/A0A287BJH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLDLEVVPERSLGNEQWEFALGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLLFDAFNQRLKVIEVYDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWIEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPVMPLSCFLGNVYAESVDVLRDGTGPSGLRLRLLAAGCGPGLLADAKMRVFERSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLTIKRENTDGQTETCTTYSKWDNIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGAHLRTAELP", "length": 422, "header": "tr|A0A287A2V6-1|A0A287A2V6_PIG Isoform 1 of Phagosome assembly factor 1 OS=Sus scrofa OX=9823 GN=PHAF1 PE=3 SV=3 CANONICAL=A0A287A2V6-1" }, "isoforms": [ { "isoform_ac": "A0A287A2V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2V6/entry#A0A287A2V6-1", "sequence": { "sequence": "MLDLEVVPERSLGNEQWEFALGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLLFDAFNQRLKVIEVYDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWIEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPVMPLSCFLGNVYAESVDVLRDGTGPSGLRLRLLAAGCGPGLLADAKMRVFERSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLTIKRENTDGQTETCTTYSKWDNIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGAHLRTAELP", "length": 422, "header": "tr|A0A287A2V6-1|A0A287A2V6_PIG Isoform 1 of Phagosome assembly factor 1 OS=Sus scrofa OX=9823 GN=PHAF1 PE=3 SV=3 CANONICAL=A0A287A2V6-1" }, "locus": { "chromosome": "6", "start_pos": 27790868, "end_pos": 27757856, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060386.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060386.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038260.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038260.3" } ] } }, { "isoform_ac": "A0A287B1V3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2V6/entry#A0A287B1V3-1", "sequence": { "sequence": "MLDLEVVPERSLGNEQWEFALGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLLFDAFNQRLKETTQKDYGEIGSSRRGAVETNSTGTHEDVIEVYDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWIEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPVMPLSCFLGNVYAESVDVLRDGTGPSGLRLRLLAAGCGPGLLADAKMRVFERSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLTIKRENTDGQTETCTTYSKWDNIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGAHLRTAELP", "length": 450, "header": "tr|A0A287B1V3-1|A0A287B1V3_PIG Computationally mapped isoform of Phagosome assembly factor 1 OS=Sus scrofa OX=9823 GN=PHAF1 PE=3 SV=2 CANONICAL=A0A287A2V6-1" }, "locus": { "chromosome": "6", "start_pos": 27790868, "end_pos": 27757856, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063925.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063925.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050146.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050146.2" } ] } }, { "isoform_ac": "A0A287BJH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2V6/entry#A0A287BJH7-1", "sequence": { "sequence": "RRSSSRCRCCPKPPRLLSVSSAAICATAGRPPWPGEPNQCWIWRWYPNALWGTSNGNSRWSPLSHDLILNLTQDGIKLLFDAFNQRLKVIEVYDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWIEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPVMPLSCFLGNVYAESVDVLRDGTGPSGLRLRLLAAGCGPGLLADAKMRVFERSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVLSPL", "length": 308, "header": "tr|A0A287BJH7-1|A0A287BJH7_PIG Computationally mapped isoform of Phagosome assembly factor 1 OS=Sus scrofa OX=9823 GN=PHAF1 PE=3 SV=2 CANONICAL=A0A287A2V6-1" }, "locus": { "chromosome": "6", "start_pos": 27788531, "end_pos": 27757624, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065701.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065701.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056680.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056680.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A2V6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A061IAE6-1", "protein_name": "UPF0183 protein C16orf70 homolog", "gene_name": "C3H16orf70", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLDLEVVPERSLGNEQWEFTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLLFDAFNQRLKVIEVYDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPVMPLSCFLGNVYAESVDVLRDGTGPSGLRLRLLAAGCGPGVLADAKMRVFERSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLAVKKENAGGQTETCTTYSKWDNIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGAHLRTAELP", "length": 422 }, "evidence": [ { "id": "A0A287A2V6", "url": "https://omabrowser.org/oma/group/A0A287A2V6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1MQA6-1", "protein_name": "Phagosome assembly factor 1", "gene_name": "PHAF1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLDLEVVPERSLGNEQWEFALGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLLFDAFNQRLKVIEVYDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPVMPLSCFLGNVYAESVDVLRDGTGPSGLRLRLLAAGCGPGLLADAKMRVFERSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLTVKRENTEGQTETCTTYSKWDNIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGAHLRTAELP", "length": 422 }, "evidence": [ { "id": "A0A287A2V6", "url": "https://omabrowser.org/oma/group/A0A287A2V6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O08654-1", "protein_name": "Phagosome assembly factor 1", "gene_name": "Phaf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLDLEVVPERSLGNEQWEFTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLLFDAFNQRLKVIEVYDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPMMPLSCFLGNVYAESVDVIRDGTGPSGLRLRLLAAGCGPGVLADAKMRVFERAVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLAIKKENAGGQTEICTTYSKWDSIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGAHLRTAELP", "length": 422 }, "evidence": [ { "id": "A0A287A2V6", "url": "https://omabrowser.org/oma/group/A0A287A2V6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q1LV04-1", "protein_name": "Phagosome assembly factor 1", "gene_name": "phaf1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLDLEVVPERSLGNEQWEFALGMPLAQAISILQKHCRIIKNVQVLYSEQMPLSHDLILNLTQDGIKLLFDACNQRLKVIEVYDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNAAEQLFHLNFRGLSFSFQLDSWSEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNNLQETKAPAMPLACFLGNVYAECVEVLRDGAGPLGLKLRLLTAGCGPGVLADTKVRAVERSIYFGDSCQDVLSALGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYYILGVDILFDSTTHLVKKFVLHTNFPGHYNFNIYHRCDFKIPLIIKKDGADAHSEDCILTTYSKWDQIQELLGHPMEKPVVLHRSSSANNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGAPRPSSLARVEQSTH", "length": 425 }, "evidence": [ { "id": "A0A287A2V6", "url": "https://omabrowser.org/oma/group/A0A287A2V6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q922R1-1", "protein_name": "Phagosome assembly factor 1", "gene_name": "Phaf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLDLEVVPERSLGNEQWEFTLGMPLAQAVAILQKHCRIIRNVQVLYSEQSPLSHDLILNLTQDGITLLFDAFNQRLKVIEVCELTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSTEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPVMPLSCFLGNVYAESVDVLRDGTGPSGLRLRLLAAGCGPGVLADAKMRVFERAVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLAIKKENAGGQTEICTTYSKWDSIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGAHLRTAELP", "length": 422 }, "evidence": [ { "id": "A0A287A2V6", "url": "https://omabrowser.org/oma/group/A0A287A2V6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BSU1-1", "protein_name": "Phagosome assembly factor 1", "gene_name": "PHAF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLDLEVVPERSLGNEQWEFTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLMFDAFNQRLKVIEVCDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPMMPLSCFLGNVYAESVDVLRDGTGPAGLRLRLLAAGCGPGLLADAKMRVFERSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLAIKKENADGQTETCTTYSKWDNIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGSHLRTAELP", "length": 422 }, "evidence": [ { "id": "A0A287A2V6", "url": "https://omabrowser.org/oma/group/A0A287A2V6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9SD33-1", "protein_name": "PHAF1 protein At3g51130", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKDYSKIGDKLVMQRPRRRLEGTAMGATVFDLRPGVGIGPFSIGMPICEAFAQIEQQPNIYDVVHVKYYDEDPLKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAVYALFGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTCRVSIYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVHVKPGKELYFTVGGQHMPFGASPQDVWTELGRPCGIHPKQVDQMVIHSASDPRPKTTICGDYFYNYFTRGLDILFDGETHKVKKFVLHTNYPGHADFNSYIKCNFVISAGADAAEANRSGNKITPSTNWDQVKEILGECGPAAIQTQGSTSNPFGSTYVYGYQNVAFEVMKNGHIATITLFQS", "length": 410 }, "evidence": [ { "id": "A0A287A2V6", "url": "https://omabrowser.org/oma/group/A0A287A2V6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VSH9-1", "protein_name": "PHAF1 protein CG7083", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLDLEIVPEISLGCDAWEFVLGMHFSQAIAIIQSQVGIIKGVQVLYSDTTPLGVDIIINLPQDGVRLIFDPVSQRLKTIEVFNMKLVKLRYFGVYFNSPEVLPSIEQIEHSFGATHPGVYDAAKQLFALHFRGLSFYFPVDSKLHSGYAHGLSSLVFLNGASPVVSKMSLYAGSNVLENRVPSLPLSCYHRQMYLESATVLRTAFGHTKGLKLKLFTEGSGRALEPRRQCFTRELLFGDSCEDVATSLGAPNRIFFKSEDKMKIHSSSVNRQAQSKRSDIFFNYFTLGIDVLFDARTQTCKKFILHTNYPGHFNFNMYHRCEFQFLLQADHPSMSDSGHDLVTPTKQEHVNITAYTKWDAISSALATSERPVVLHRASSTNTANPFGSTFCYGYQDLIFEVMPNSHIASVTLYNTAPPRQPAHSWQQHKMQDIRLTVA", "length": 438 }, "evidence": [ { "id": "A0A287A2V6", "url": "https://omabrowser.org/oma/group/A0A287A2V6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A2V6" } ], "pmid": "" }, { "name": "synaptic vesicle membrane", "id": "GO:0030672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030672", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A2V6" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A2V6" } ], "pmid": "" }, { "name": "phagophore assembly site", "id": "GO:0000407", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000407", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A2V6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "Golgi to plasma membrane protein transport", "id": "GO:0043001", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043001", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A2V6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 375, "end_pos": 377, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 375, "end_pos": 377 }, { "start_pos": 59, "end_pos": 61 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QHQSIHV", "url": "https://omabrowser.org/oma/group/QHQSIHV/", "database": "OMA", "categories": [ "Protein 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"https://www.uniprot.org/uniprotkb/A0A287A2Y3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAHGSVMFSDVSIDFSQEEWEYLNLEQRDLYRNVMLENYSNLVSLGCFISKPDVISLLEQGKEPWKVVRKGRRPYSGLETKKLSSENDIYEINLSQWKIMERIKNHGLKSLILKNDWASKRKFEGQEEYFSRVKITSQKVSSYQKRSSLTSHQRIHFVEKPYECKECGKAFRVRQQLTFHHRIHTGEKPYECKECGMAFRQTAHLTRHQRLHSGEKMYECKECGESFICGPDLRVHQKIHIGEKPYECKECGKAFRVRGQLTLHQRIHTGEKPYVCTECGKAFRQYAHLTRHQKVNVADKLYECKECGKAFLCGSGLRVHHKLHTGEKPYECKECGKAFRVRQQLTLHQRIHTGEKPYECKECGKTFSRGYHLILHHRIHTGEKPYECKECWKAFSRYSQLISHQSIHIGVKPYDCKECGKAFRLLSQLTQHQSIHIGEKPYKCKECGKAFRLRQKLTLHQSIHTGEKPFECKECRKAFRLNSSLIQHLRIHSGEKPYECKECKKAFRQHSHLTHHLKIHNVKI", "length": 524, "header": "tr|A0A287A2Y3-1|A0A287A2Y3_PIG Isoform 1 of Zinc finger protein 545 OS=Sus scrofa OX=9823 GN=ZFP82 PE=3 SV=1 CANONICAL=A0A287A2Y3-1" }, "isoforms": [ { "isoform_ac": "A0A287A2Y3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Y3/entry#A0A287A2Y3-1", "sequence": { "sequence": "MAHGSVMFSDVSIDFSQEEWEYLNLEQRDLYRNVMLENYSNLVSLGCFISKPDVISLLEQGKEPWKVVRKGRRPYSGLETKKLSSENDIYEINLSQWKIMERIKNHGLKSLILKNDWASKRKFEGQEEYFSRVKITSQKVSSYQKRSSLTSHQRIHFVEKPYECKECGKAFRVRQQLTFHHRIHTGEKPYECKECGMAFRQTAHLTRHQRLHSGEKMYECKECGESFICGPDLRVHQKIHIGEKPYECKECGKAFRVRGQLTLHQRIHTGEKPYVCTECGKAFRQYAHLTRHQKVNVADKLYECKECGKAFLCGSGLRVHHKLHTGEKPYECKECGKAFRVRQQLTLHQRIHTGEKPYECKECGKTFSRGYHLILHHRIHTGEKPYECKECWKAFSRYSQLISHQSIHIGVKPYDCKECGKAFRLLSQLTQHQSIHIGEKPYKCKECGKAFRLRQKLTLHQSIHTGEKPFECKECRKAFRLNSSLIQHLRIHSGEKPYECKECKKAFRQHSHLTHHLKIHNVKI", "length": 524, "header": "tr|A0A287A2Y3-1|A0A287A2Y3_PIG Isoform 1 of Zinc finger protein 545 OS=Sus scrofa OX=9823 GN=ZFP82 PE=3 SV=1 CANONICAL=A0A287A2Y3-1" }, "locus": { "chromosome": "6", "start_pos": 45969678, "end_pos": 45957837, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044991.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044991.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038078.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038078.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Y3", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Y3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JT46-1", "protein_name": "Zinc finger protein 545", "gene_name": "Zfp82", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARVSVMFSDVSVVFSKEEWDCLDLDQRTLYRDVMMENYHNVLSLAGCFISKPDVISLLEQGKEPWKRRRCPDSGVKDETHQLFSENGVYAVSLSQWKIMERIGNSGLKSLLLKHEWASRRRQERQEGSREGYLSQVKHTSERVSSSEKCTLTTRQRIPSVEKPYECDACGKAFRVRQQLTFHHRIHTGEKPYECKECGMAFRQTAHLTRHQRLHSGEKLYECKECGQAFIYGPDLRAHQKLHTGEKPYACKECGKAFRVRGQLTLHQRIHTGEKPYVCKECGKAFRQYAHLTRHQKLNVADRLYACKECGKDFLCGSGLRVHHKLHTGEKPYECKDCGKAFRVRQQLTLHQRIHTGEKPYECNECGKTFSRGYHLILHHRIHTGEKPYECKECWKAFSRYSQLISHQSIHIGVKPYDCKECGKAFRLLSQLTQHQSIHAGEKPYTCKECGKSFRLRQKLTLHQSIHTGEKPFECKECRKAFRLNSSLIQHLRIHSGEKPYECKECKKAFRQHSHLTHHLKVHSVQV", "length": 527 }, "evidence": [ { "id": "A0A287A2Y3", "url": "https://omabrowser.org/oma/group/A0A287A2Y3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6P9Y7-1", "protein_name": "Zinc finger protein 82", "gene_name": "Zfp82", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARVSVVFSDVSIAFSQEEWESLDLEQRNLYKDVMMENYHNVASLGCFISKPDVISLLEQGKEPWKVVRQRKPCPDSETKDETNQVFSENGIYEMNLSQWKIMERIGNSGLKSLLLKNGWESRRKQERQEDPQEGYLSQVRHTSERVSSYEKRALTTRQRIHFVEKPYECNECGKAFRVRQQLTFHHRIHTGEKPYECKECGMAFRQTAHLTRHQRLHSGEKLYECKECGQAFIYGPELRAHQKLHTGEKPYTCRECGKAFRVRGQLTLHQRIHTGEKPYVCQECGKAFRQLAHLTRHQKLNVVDRLYECKECGKDFLCGSGLRVHHKLHTGEKPYECKDCGKAFRVRQQLTLHQRSHTGEKPYECTECGKTFSRGYHLILHHRIHTGEKPYECKECWKAFSRYSQLISHQSIHIGVKPYDCKDCGKAFRLLSQLTQHQSVHAGEKPYSCKECGKSFRLRQKLALHQSIHTGEKPFECKECRKAFRLNSSLIQHLRIHSGEKPYECKECKKAFRQHSHLTHHLKVHTVKV", "length": 530 }, "evidence": [ { "id": "A0A287A2Y3", "url": "https://omabrowser.org/oma/group/A0A287A2Y3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N141-1", "protein_name": "Zinc finger protein 82 homolog", "gene_name": "ZFP82", 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} ] } ], "protein_names": [ { "name": "ADP ribosylation factor like GTPase 14 effector protein", "type": "synonym", "evidence": [ { "id": "A0A287A2Y6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Y6/entry#names_and_taxonomy" } ] }, { "name": "ARL14 effector protein", "type": "synonym", "evidence": [ { "id": "XP_020938889", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938889" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Y6", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Y6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARL14EP", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Y6", "locus": { "chromosome": "2", "start_pos": 30296444, "end_pos": 30311521, "strand": "+", 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"Protein Classification" ] }, { "id": "PTHR46536", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46536", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46536:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46536:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14949", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14949", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020938889", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938889", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A2Y6", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Y6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2Y6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Y6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMDPCSVGVQLRTTNECHKTYYTRHTGFKTLQELSSNDMLLLQLRTGMTLSGNNTICFHHAKIYIDRFEDLQKSCCDPFNIHKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWKLCPKCTQIINGSVDVDSEDRQRRKPDSDGRTAKALRSLQFANPGKQTEFAPETGKREKRRLTKNATAGSDRQVIPAKSKVYDSQGLLIFSGMDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRKWLYEQIEIEGGEIIHNKHAG", "length": 260, "header": "tr|A0A287A2Y6-1|A0A287A2Y6_PIG Isoform 1 of ADP ribosylation factor like GTPase 14 effector protein OS=Sus scrofa OX=9823 GN=ARL14EP PE=4 SV=1 CANONICAL=A0A287A2Y6-1" }, "isoforms": [ { "isoform_ac": "A0A287A2Y6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Y6/entry#A0A287A2Y6-1", "sequence": { "sequence": "MMDPCSVGVQLRTTNECHKTYYTRHTGFKTLQELSSNDMLLLQLRTGMTLSGNNTICFHHAKIYIDRFEDLQKSCCDPFNIHKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWKLCPKCTQIINGSVDVDSEDRQRRKPDSDGRTAKALRSLQFANPGKQTEFAPETGKREKRRLTKNATAGSDRQVIPAKSKVYDSQGLLIFSGMDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRKWLYEQIEIEGGEIIHNKHAG", "length": 260, "header": "tr|A0A287A2Y6-1|A0A287A2Y6_PIG Isoform 1 of ADP ribosylation factor like GTPase 14 effector protein OS=Sus scrofa OX=9823 GN=ARL14EP PE=4 SV=1 CANONICAL=A0A287A2Y6-1" }, "locus": { "chromosome": "2", "start_pos": 30304142, "end_pos": 30298682, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039547.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039547.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038286.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038286.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2Y6", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Y6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110259283", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259283", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5EA92-1", "protein_name": "ARL14 effector protein", "gene_name": "ARL14EP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMDPCSVGVQLRTTNECHKTYYTRHTGFKTLQELSSNDMLLLQLRTGMTLSGNNTICFHHAKVYIDRFEDLQKSCCDPFNIHKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWKLCPKCTQIINGSVDVDSEDRQKRKPDSDGRTAKALRSLQFANPGKQTEFAPETGKREKRRLTKNATAGSDRQVIPAKSKVYDSQGLLIFSGMDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRKWLYEQIEIEGGEIIHNKHAG", 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Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A383", "url": "https://www.uniprot.org/uniprotkb/A0A287A383" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155590", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155590", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B1AXV0-1", "protein_name": "DOMON domain-containing protein FRRS1L", "gene_name": "Frrs1l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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{ "id": "A0A287A383", "url": "https://omabrowser.org/oma/group/A0A287A383/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9P0K9-1", "protein_name": "DOMON domain-containing protein FRRS1L", "gene_name": "FRRS1L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARPPRQHPGVWASLLLLLLTGPAACAASPADDGAGPGGRGPRGRARGDTGADEAVPRHDSSYGTFAGEFYDLRYLSEEGYPFPTAPPVDPFAKIKVDDCGKTKGCFRYGKPGCNAETCDYFLSYRMIGADVEFELSADTDGWVAVGFSSDKKMGGDDVMACVHDDNGRVRIQHFYNVGQWAKEIQRNPARDEEGVFENNRVTCRFKRPVNVPRDETIVDLHLSWYYLFAWGPAIQGSITRHDIDSPPASERVVSIYKYEDIFMPSAAYQTFSSPFCLLLIVALTFYLLMGTP", "length": 293 }, "evidence": [ { "id": "A0A287A383", "url": "https://omabrowser.org/oma/group/A0A287A383/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of glutamate receptor signaling pathway", "id": "GO:1900449", "url": 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"function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A3B9", "url": "https://www.uniprot.org/uniprotkb/A0A287A3B9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287A3B9", "locus": {} } ], "crossref": [ { "id": "A0A287A3B9", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A3B9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037635", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037635", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03784", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03784", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48043", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48043", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48043:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48043:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00201", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00201", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9753281", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9753281", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9757110", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9757110", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A3B9", "url": "https://www.uniprot.org/uniprotkb/A0A287A3B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A3B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3B9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R465", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R465", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R465-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R465-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA02", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA02-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA02-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "GPIKMSLKCLSFLLLQLTCYFSSGRCGKVLVWPVEHSHWININTILDELATRDHEVTVLASPASILIDPNKPSVTKFETFPSSLTKDDYKKFINRYVKTSMYAAKVSFWTYFSTWKNLFKEYTDITLKLCQDAVSNKRLMAKLQESRFDVVLADAIELCGELLAEILNIPLVYSLHFSPGYLVEKHSVKLPFPPSYVPVVMSELSDHMTFTERVKNIIFILYFDFWFQTFNEKWNQFYSEALGRPTTLFEAMGKADMWLIQTCWDFEFPPRLLPNFEFVGGLHCKPAKPLPKITYSCFFVQSSGENGIVVFSLGSIVINLTEERTNTIASALTQIPQKVLLKINTFLEIHSILGHPKTKAFITHGGNNGIYEAIYHEIPMVGIPLFAKGAAVRLDLETMPRTDLVNALKQVTNNPS", "length": 416, "header": "tr|A0A287A3B9-1|A0A287A3B9_PIG Isoform 1 of glucuronosyltransferase OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287A3B9-1" }, "isoforms": [ { "isoform_ac": "A0A287A3B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3B9/entry#A0A287A3B9-1", "sequence": { "sequence": "GPIKMSLKCLSFLLLQLTCYFSSGRCGKVLVWPVEHSHWININTILDELATRDHEVTVLASPASILIDPNKPSVTKFETFPSSLTKDDYKKFINRYVKTSMYAAKVSFWTYFSTWKNLFKEYTDITLKLCQDAVSNKRLMAKLQESRFDVVLADAIELCGELLAEILNIPLVYSLHFSPGYLVEKHSVKLPFPPSYVPVVMSELSDHMTFTERVKNIIFILYFDFWFQTFNEKWNQFYSEALGRPTTLFEAMGKADMWLIQTCWDFEFPPRLLPNFEFVGGLHCKPAKPLPKITYSCFFVQSSGENGIVVFSLGSIVINLTEERTNTIASALTQIPQKVLLKINTFLEIHSILGHPKTKAFITHGGNNGIYEAIYHEIPMVGIPLFAKGAAVRLDLETMPRTDLVNALKQVTNNPS", "length": 416, "header": "tr|A0A287A3B9-1|A0A287A3B9_PIG Isoform 1 of glucuronosyltransferase OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287A3B9-1" }, "locus": { "chromosome": "8", "start_pos": 66172001, "end_pos": 66148862, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040255.2", "url": "https://www.ensembl.org/id/ENSSSCT00000040255.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038236.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038236.2" } ] } }, { "isoform_ac": "A0A5G2R465-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3B9/entry#A0A5G2R465-1", "sequence": { "sequence": "MNKMSLKCLSFLLLQLTCYFSSGRCGKVLVWPVEHSHWININTILDELATRDHEVTVLASPASILIDPNKPSVTKFETFPSSLTKDDYKKFINRYVKTSMYAAKVSFWTYFSTWKNLFKEYTDITLKLCQDAVSNKRLMAKLQESRFDVVLADAIELCGELLAEILNIPLVYSLHFSPGYLVEKHSVKLPFPPSYVPVVMSELSDHMTFTERVKNIIFILYFDFWFQTFNEKWNQFYSEALGRPTTLFEAMGKADMWLIQTCWDFEFPPRLLPNFEFVGGLHCKPAKPLPKITYSCFLWCRLQMRLRP", "length": 308, "header": "tr|A0A5G2R465-1|A0A287A3B9_PIG Computationally mapped isoform of glucuronosyltransferase OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287A3B9-1" }, "locus": { "chromosome": "8", "start_pos": 66171037, "end_pos": 66168715, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088333.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088333.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072003.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072003.2" } ] } }, { "isoform_ac": "A0A5G2RA02-1", "url": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF00795", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005663232", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663232", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A3U6", "url": "https://www.uniprot.org/uniprotkb/A0A287A3U6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A3U6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3U6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A424", "url": "https://www.uniprot.org/uniprotkb/A0A287A424", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A424-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A424-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R398", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R398", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R398-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R398-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6B1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6B1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6B1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP60", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP60-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP60-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLAVPSCRTCYLARPPRLGFIIRPPHQLLSLLLGPRLRILRLSILCAQPRPRSMAISSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLARIDLNYLRQLRQHLPVFQHRRPDLYGSLGHPLS", "length": 345, "header": "tr|A0A287A424-1|A0A287A424_PIG Isoform 1 of Deaminated glutathione amidase OS=Sus scrofa OX=9823 GN=NIT1 PE=1 SV=3 CANONICAL=A0A287A424-1" }, "isoforms": [ { "isoform_ac": "A0A287A3U6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A424/entry#A0A287A3U6-1", "sequence": { "sequence": "MVLAVPSCRTCYLARPPRLGFIIRPPHQLLSLLLGPRLRILRLSILCAQPRPRSMAISSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEVRGHLFRTLRAASKAYGGSQARGLIRAVATSLHHSNSGSK", "length": 297, "header": "tr|A0A287A3U6-1|A0A287A424_PIG Computationally mapped isoform of Deaminated glutathione amidase OS=Sus scrofa OX=9823 GN=NIT1 PE=1 SV=2 CANONICAL=A0A287A424-1" }, "locus": { "chromosome": "4", "start_pos": 89326701, "end_pos": 89324488, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064287.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064287.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038560.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038560.2" } ] } }, { "isoform_ac": "A0A287A424-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A424/entry#A0A287A424-1", "sequence": { "sequence": "MVLAVPSCRTCYLARPPRLGFIIRPPHQLLSLLLGPRLRILRLSILCAQPRPRSMAISSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLARIDLNYLRQLRQHLPVFQHRRPDLYGSLGHPLS", "length": 345, "header": "tr|A0A287A424-1|A0A287A424_PIG Isoform 1 of Deaminated glutathione amidase OS=Sus scrofa OX=9823 GN=NIT1 PE=1 SV=3 CANONICAL=A0A287A424-1" }, "locus": { "chromosome": "4", "start_pos": 89326701, "end_pos": 89323879, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039448.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039448.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038506.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038506.3" } ] } }, { "isoform_ac": "A0A5G2QCP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A424/entry#A0A5G2QCP3-1", "sequence": { "sequence": "MVGLGFIIRPPHQLLSLLLGPRLRILRLSILCAQPRPRSMAISSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLARIDLNYLRQLRQHLPVFQHRRPDLYGSLGHPLS", "length": 288, "header": "tr|A0A5G2QCP3-1|A0A287A424_PIG Computationally mapped isoform of Deaminated glutathione amidase OS=Sus scrofa OX=9823 GN=NIT1 PE=1 SV=1 CANONICAL=A0A287A424-1" }, "locus": { "chromosome": "4", "start_pos": 89326117, "end_pos": 89323879, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077386.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077386.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062356.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062356.1" } ] } }, { "isoform_ac": "A0A5G2R398-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A424/entry#A0A5G2R398-1", "sequence": { "sequence": "FFRLGFIIRPPHQLLSLLLGPRLRILRLSILCAQPRPRSMAISSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLARIDLNYLRQLRQHLPVFQHRRPDLYGSLGHPLS", "length": 288, "header": "tr|A0A5G2R398-1|A0A287A424_PIG Computationally mapped isoform of Deaminated glutathione amidase OS=Sus scrofa OX=9823 GN=NIT1 PE=1 SV=2 CANONICAL=A0A287A424-1" }, "locus": { "chromosome": "4", "start_pos": 89326087, "end_pos": 89323879, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072222.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072222.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065024.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065024.2" } ] } }, { "isoform_ac": "A0A5G2R6B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A424/entry#A0A5G2R6B1-1", "sequence": { "sequence": "MLGFIIRPPHQLLSLLLGPRLRILRLSILCAQPRPRSMAISSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEPVSS", "length": 244, "header": "tr|A0A5G2R6B1-1|A0A287A424_PIG Computationally mapped isoform of Deaminated glutathione amidase OS=Sus scrofa OX=9823 GN=NIT1 PE=1 SV=1 CANONICAL=A0A287A424-1" }, "locus": { "chromosome": "4", "start_pos": 89326681, "end_pos": 89320715, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083428.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083428.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069661.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069661.1" } ] } }, { "isoform_ac": "A0A8W4FP60-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A424/entry#A0A8W4FP60-1", "sequence": { "sequence": "MVGLGFIIRPPHQLLSLLLGPRLRILRLSILCAQPRPRSMAISSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGRPGIQPASSWMLVRFISTEPQQELPRAFS", "length": 266, "header": "tr|A0A8W4FP60-1|A0A287A424_PIG Computationally mapped isoform of Deaminated glutathione amidase OS=Sus scrofa OX=9823 GN=NIT1 PE=1 SV=1 CANONICAL=A0A287A424-1" }, "locus": { "chromosome": "4", "start_pos": 89326117, "end_pos": 89324351, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104895.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104895.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081273.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081273.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 211, "start_aa": "Thr", "end_pos": 211, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr211", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AH26-1", "protein_name": "Deaminated glutathione amidase", "gene_name": "LOC121106470", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MYGPRGQSEGVLLAVRRSLKRGSLCAPLPRLSAVLRLPLHRFCAGPRSPLGSHQAMAASLGPKPLVAVGQVTSTPDKEQNFSGCAALVRAAARRGACLVFLPEGFDYIGRDSAQTLSLAESLDGDLMARYSTLARDCGVWLSLGGFHERRADWPSTQRIYNCHVLLDPTGRLAAAYRKTHLCDVELEGRVTMKESSFTNPGTEIVPPISTPAGMLGLSICYDLRFPEISLALRHAGAEILTYPSAFTFPTGSAHWEVLLRARAIETQCYVVAAAQTGRNHEGRVSYGHTLVADPWGAVVAQCSEGPGLCYAEIDLEYLRRVRREIPVQSHRRADLYGTVGLQAALSVP", "length": 348 }, "evidence": [ { "id": "A0A287A424", "url": "https://omabrowser.org/oma/group/A0A287A424/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HU11-1", "protein_name": "Deaminated glutathione amidase", "gene_name": "Nit1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEVSSSTSWELPLVAVCQVTSTPNKQENFKTCAELVLEAARLGACLAFLPEAFDFIARNPAETLQLSEPLDGDLLGRYSQLARECGIWLSLGGFHERGQDWEQTQKIYNCHVLLNNKGLVVATYRKTHLCDVEIPGQGPMRESNSTMPGTILEPPISTPAGKVGLAICYDMRFPELSLKLAQAGAEILTYPSAFGSVTGPAHWEVLLRARAIESQCYVIAAAQCGRHHETRTSYGHSMVVDPWGTVVASCSEGPGLCLARIDLNFLQQIRQHLPVFQHRRPDLYGNLGQPLS", "length": 292 }, "evidence": [ { "id": "A0A287A424", "url": "https://omabrowser.org/oma/group/A0A287A424/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P47016-1", "protein_name": "Deaminated glutathione amidase", "gene_name": "NIT2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTSKLKRVAVAQLCSSADLTKNLKVVKELISEAIQKKADVVFLPEASDYLSQNPLHSRYLAQKSPKFIRQLQSSITDLVRDNSRNIDVSIGVHLPPSEQDLLEGNDRVRNVLLYIDHEGKILQEYQKLHLFDVDVPNGPILKESKSVQPGKAIPDIIESPLGKLGSAICYDIRFPEFSLKLRSMGAEILCFPSAFTIKTGEAHWELLGRARAVDTQCYVLMPGQVGMHDLSDPEWEKQSHMSALEKSSRRESWGHSMVIDPWGKIIAHADPSTVGPQLILADLDRELLQEIRNKMPLWNQRRDDLFH", "length": 307 }, "evidence": [ { "id": "A0A287A424", "url": "https://omabrowser.org/oma/group/A0A287A424/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q557J5-1", "protein_name": "Deaminated glutathione amidase", "gene_name": "nit1-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIRNSKILMNKLKRIGLGQITSTNNKEDNFRKCKEMIEKAVENKVNLFCLPECFAFISGGIHQFESRDNAEYLDQKGGIIERYKDLAKQNNIWLSLGGFHEKILDDPNDMIYNTHLIIDSNGVIVCEYRKMHLFDVDIPSKGVKMNESKVVKGGNDLVVCDSPVGKLGLSICYDLRFPELYLSLRRMDAQILLVPSAFMKSTGEAHWKPLLQARAIENQTYVIAAAQTGDHHSKRSSYGHSMIIDPWGKVLHDLPDNLNDIAFVDIDLDYISTCRENIPVFNHKKLNNYKI", "length": 291 }, "evidence": [ { "id": "A0A287A424", "url": "https://omabrowser.org/oma/group/A0A287A424/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q7TQ94-1", "protein_name": "Deaminated glutathione amidase", "gene_name": "Nit1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLGFITRPPHQLLSLLCTGYRLPQISVLCTQPRPRAMAESSSTSWELPLVAVCQVTSTPNKQENFKTCAELVQEATRLGACLAFLPEAFDFIARNPAETLLLSEPLDGDLLGQYSQLARECGIWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGSVVASYRKTHLCDVEIPGQGPMRESNYTMPGYALEPPVKTPAGKVGLAICYDMRFPELSLKLAQAGAEILTYPSAFGSVTGPAHWEVLLRARAIESQCYVIAAAQCGRHHETRASYGHSMVVDPWGTVVASCSEGPGLCLARIDLHFLQQMRQHLPVFQHRRPDLYGSLLPLS", "length": 327 }, "evidence": [ { "id": "A0A287A424", "url": "https://omabrowser.org/oma/group/A0A287A424/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86X76-1", "protein_name": "Deaminated glutathione amidase", "gene_name": "NIT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLGFITRPPHRFLSLLCPGLRIPQLSVLCAQPRPRAMAISSSSCELPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIARDPAETLHLSEPLGGKLLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAVVATYRKTHLCDVEIPGQGPMCESNSTMPGPSLESPVSTPAGKIGLAVCYDMRFPELSLALAQAGAEILTYPSAFGSITGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLARIDLNYLRQLRRHLPVFQHRRPDLYGNLGHPLS", "length": 327 }, "evidence": [ { "id": "A0A287A424", "url": "https://omabrowser.org/oma/group/A0A287A424/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VDK1-1", "protein_name": "Deaminated glutathione amidase", "gene_name": "Nit1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLGFITRPPHQLLCTGYRLLRTPVLCTQPRPRTMSSSTSWELPLVAVCQVTSTPNKQENFKTCAELVQEAARLGACLAFLPEAFDFIARNPAETLLLSEPLNGDLLGQYSQLARECGIWLSLGGFHERGQDWEQNQKIYNCHVLLNSKGSVVASYRKTHLCDVEIPGQGPMRESNYTKPGGTLEPPVKTPAGKVGLAICYDMRFPELSLKLAQAGAEILTYPSAFGSVTGPAHWEVLLRARAIESQCYVIAAAQCGRHHETRASYGHSMVVDPWGTVVARCSEGPGLCLARIDLHFLQQMRQHLPVFQHRRPDLYGSLGHPLS", "length": 323 }, "evidence": [ { "id": "A0A287A424", "url": "https://omabrowser.org/oma/group/A0A287A424/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94JV5-1", "protein_name": "Deaminated glutathione amidase, chloroplastic/cytosolic", "gene_name": "NLP2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNAYSVSLDFTKPSLFTRITLSSQIPLTMATTVNKTVRVAAAQMTSVNDLMTNFATCSRLVQEAALAGAKLICFPENFSFVGDKEGESVKIAEPLDGPVMERYCSLARDSNIWLSLGGFQERFDDTHLCNTHVVIDDAGMIRDTYQKMHLFDVDVPGGSSYKESSFTVPGTKIVSVDSPVGRLGLTVCYDLRFPKIYQQLRFEQKAQVLLVPSAFTKVTGEAHWEILLRARAIETQCYVIAAAQAGKHNEKRESYGDTLIIDPWGTVVGRLPDRVSTGIVVADIDFSLIDSVRTKMPIDKQRVSIDL", "length": 307 }, "evidence": [ { "id": "A0A287A424", "url": "https://omabrowser.org/oma/group/A0A287A424/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A287A424", "url": "https://www.uniprot.org/uniprotkb/A0A287A424" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "amide catabolic process", "id": "GO:0043605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043605", "evidence": [ { "database": "UniProtKB", "id": "A0A287A424", "url": "https://www.uniprot.org/uniprotkb/A0A287A424" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "deaminated glutathione amidase activity", "id": "GO:0110050", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0110050", "evidence": [ { "database": "UniProtKB", "id": "A0A287A424", "url": "https://www.uniprot.org/uniprotkb/A0A287A424" } ], "pmid": "" }, { "name": "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides", "id": "GO:0016811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016811", "evidence": [ { "database": "UniProtKB", "id": "A0A287A424", "url": "https://www.uniprot.org/uniprotkb/A0A287A424" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 197, "end_pos": 199, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A424", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A424" }, { "id": "PS50263", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50263" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CN hydrolase", "eco_id": "ECO_0000259", "start_pos": 64, "end_pos": 316, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 211 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 168, "end_pos": 170 }, { "start_pos": 197, "end_pos": 199 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A3Y1-1", "uniprot_ac": "A0A287A3Y1", "uniprot_id": "A0A287A3Y1_PIG", "mass": { "chemical_mass": 39140.0, "monoisotopic_mass": 39140.0 }, "refseq": { "ac": "XP_001924228", "name": "GPALPP motifs-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924228" }, "gene_names": [ { "name": "GPALPP1", "type": "recommended", "evidence": [ { "id": "A0A287A3Y1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A3Y1" } ] }, { "name": "GPALPP1", "type": "synonym", "evidence": [ { "id": "XP_001924228", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924228" } ] } ], "protein_names": [ { "name": "GPALPP motifs-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A287A3Y1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A3Y1/entry#names_and_taxonomy" } ] }, { "name": "GPALPP motifs-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001924228", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924228" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A3Y1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3Y1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GPALPP1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3Y1", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000009419", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009419", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155483", "url": "https://www.ncbi.nlm.nih.gov/gene/100155483", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022226", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022226", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155483", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155483", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NKAADFG", "url": "https://omabrowser.org/oma/group/NKAADFG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A3Y1", "url": "https://www.orthodb.org/?gene=A0A287A3Y1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46370", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46370", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46370:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46370:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12572", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12572", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001924228", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924228", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A3Y1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3Y1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A3Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3Y1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJZ4", "url": "https://www.uniprot.org/uniprotkb/F1RJZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJZ4-1", "url": "https://www.uniprot.org/uniprotkb/F1RJZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARDLIGPALPPGFKASGSAEDEERDLSPVAGPALPPNYKSCSSESSDSDEDSSSLYEEGNQESEEDDTGATARKQRRHEEDDDDDDEGFFGPALPPGFKKQDDSPPRPIIGPALPPGFIKSTQKSDRSRDDPGQISSYFNSEKETDSSEEEDIVGPMPAKGPVNSSVSTEFEKRAQRMKEKLTKGDNDSSKPITRESWMTELPPEMKDFGLGPRTFKRKADDKSGDRSVWTDTPADRERKAKETQEARKSFSKKDEEHTLSGREKRLAEQVSSYNESKRSESLMDIHHKKLKNKAAEDKNKPQERIPFDRDKDLKVHRFDEAQKKALIKKSRELNTRFSHGKGNMFL", "length": 348, "header": "tr|A0A287A3Y1-1|A0A287A3Y1_PIG Isoform 1 of GPALPP motifs-containing protein 1 OS=Sus scrofa OX=9823 GN=GPALPP1 PE=1 SV=1 CANONICAL=A0A287A3Y1-1" }, "isoforms": [ { "isoform_ac": "A0A287A3Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3Y1/entry#A0A287A3Y1-1", "sequence": { "sequence": "MARDLIGPALPPGFKASGSAEDEERDLSPVAGPALPPNYKSCSSESSDSDEDSSSLYEEGNQESEEDDTGATARKQRRHEEDDDDDDEGFFGPALPPGFKKQDDSPPRPIIGPALPPGFIKSTQKSDRSRDDPGQISSYFNSEKETDSSEEEDIVGPMPAKGPVNSSVSTEFEKRAQRMKEKLTKGDNDSSKPITRESWMTELPPEMKDFGLGPRTFKRKADDKSGDRSVWTDTPADRERKAKETQEARKSFSKKDEEHTLSGREKRLAEQVSSYNESKRSESLMDIHHKKLKNKAAEDKNKPQERIPFDRDKDLKVHRFDEAQKKALIKKSRELNTRFSHGKGNMFL", "length": 348, "header": "tr|A0A287A3Y1-1|A0A287A3Y1_PIG Isoform 1 of GPALPP motifs-containing protein 1 OS=Sus scrofa OX=9823 GN=GPALPP1 PE=1 SV=1 CANONICAL=A0A287A3Y1-1" }, "locus": { "chromosome": "11", "start_pos": 22267309, "end_pos": 22236995, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058368.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058368.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038460.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038460.1" } ] } }, { "isoform_ac": "F1RJZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3Y1/entry#F1RJZ4-1", "sequence": { "sequence": "MARDLIGPALPPGFKASGSAEDEERDLSPVAGPALPPNYKSCSSESSDSDEDSSSLYEEGNQESEEDDTGATARPIIGPALPPGFIKSTQKSDRSRDDPGQISSYFNSEKETDSSEEEDIVGPMPAKGPVNSSVSTEFEKRAQRMKEKLTKGDNDSSKPITRESWMTELPPEMKDFGLGPRTFKRKADDKSGDRSVWTDTPADRERKAKETQEARKSFSKKDEEHTLSGREKRLAEQVSSYNESKRSESLMDIHHKKLKNKAAEDKNKPQERIPFDRDKDLKVHRFDEAQKKALIKKSRELNTRFSHGKGNMFL", "length": 314, "header": "tr|F1RJZ4-1|A0A287A3Y1_PIG Computationally mapped isoform of GPALPP motifs-containing protein 1 OS=Sus scrofa OX=9823 GN=GPALPP1 PE=1 SV=3 CANONICAL=A0A287A3Y1-1" }, "locus": { "chromosome": "11", "start_pos": 22267309, "end_pos": 22236995, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010321.4", "url": "https://www.ensembl.org/id/ENSSSCT00000010321.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010053.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010053.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJZ4", "url": "https://www.uniprot.org/uniprotkb/F1RJZ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155483", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155483", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9S8C8-1", "protein_name": "GPALPP motifs-containing protein 1", "gene_name": "GPALPP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSAGAGRVSLAFGGSLAARRGVLTRLGDTCVRLQCLTPRMARDLIGPALPPGFKAGGSAEDEERDSSPVAGPALPPNYKSSSSESSDSDEDSSSLSEEGNQESEEDDTGPPARKLRRNQDDDDDDDDEGFFGPALPPGFKKQDDSPPRPMIGPALPPGFLKSTQKSDEGRSDPGQVSSDFNSEKETDSSEEEDIVGPMPAKGPVNSSVTAEFEKRAQRMKEKLTKGDDDSSKPITRESWMTELPPEMKDFGLGPRTFKRRADGKSGDRSVWTDTPADRERKAKEMQEARKSFSKKDEEYIPSGRDKRLAEQVSSYNESKRSESLMDIHHKKLKNKAAEDKNKPQERIPFDRDTDLKVHRFDEAQKKALIKKSRELNSRFSHGKGNMFL", "length": 389 }, "evidence": [ { "id": "A0A287A3Y1", "url": "https://omabrowser.org/oma/group/A0A287A3Y1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3H839-1", "protein_name": "GPALPP motifs-containing protein 1", "gene_name": "Gpalpp1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARDLIGPALPPGFKEHATTEDEEADLSPVAGPALPPNYRSSSSDSSDSDEDSSSLSEEGNQESEENDTGPTARKQRRNQDRDDDDDGFFGPALPPGFKKQDDSPPRPMIGPALPPGFIKSSQKSDRGREDPGQVSSFFNSEEAASSEDEDIVGPMPAKGPVNYSVTTEFEKRAQRMKEKLTKGDDDSSKPITRESWMTELPPEMKDFGLGPRTFKRRADDKSGDRSVWTDTPADRERKAKEIQETRKSLSKKDEENVLSGRDKRLAEQVSSYNESRRSESLMDIHHKKLKNKAAEDKNKHQERIPFDRDKDLKVNRFDEAQKKALIKKSQELNTRFSHGKGNMFL", "length": 346 }, "evidence": [ { "id": "A0A287A3Y1", "url": "https://omabrowser.org/oma/group/A0A287A3Y1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q4V893-1", "protein_name": "GPALPP motifs-containing protein 1", "gene_name": "Gpalpp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARDLIGPALPPGFKERATVEDQERDPSPVAGPALPPNYRSSSSDSSDSNEDSSSLSEEGNQESEEDDAGPTAKKQRRNQDRDDDDDDDGFFGPALPPGFKKQDDSPPRPIIGPALPPGFIKSPQKNDKGRENPGQVSPFFNSEEAESGEDEDIVGPMPAKGPVDYSVTAEFEKRAQRMKEKLTKGDDDSPKPVTRESWMTELPPEMKDFGLGPRTFKRRADDKSGDRSVWTDTPADRERKAKEIQEARKSLSKKDEENMLSGRDKRLAEQVSSYNESKRSESLMDIHHKRLKTKAAEDKNRHQERTPFDRDKDLKVNRFDEAQKKALIKKSRELNTRFSHGKGNMFL", "length": 348 }, "evidence": [ { "id": "A0A287A3Y1", "url": "https://omabrowser.org/oma/group/A0A287A3Y1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q69ZC8-1", "protein_name": "GPALPP motifs-containing protein 1", "gene_name": "Gpalpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARDLIGPALPPGFKEHATVEDEERDPSPVAGPALPPNYRSCSSDSSDSDEDSSSLSEEGNQESEEEDTGPNAKKQRRNQDDDDDDDGFFGPALPPGFKKQDDSPPRPIIGPALPPGFIKSPQKNDKGREDPGQVSSFFNSEEAESGEDEDIVGPMPAKGPVNYSVTTEFEKRAQRMKEKLTKGDDDSSKPITRESWMTELPPEMKEFGLGPRTFKRRADDKSGDRSVWTDTPADRERKAKEIQEARKSFSKKDEENILSGRDKRLAEQVSSYNESKRSESLMDIHHKKLKSKAAEDKNKHQERIPFDRDKDLKVNRFDEAQKKALIKKSRELNTRFSHGKGNMFL", "length": 346 }, "evidence": [ { "id": "A0A287A3Y1", "url": "https://omabrowser.org/oma/group/A0A287A3Y1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IXQ4-1", "protein_name": "GPALPP motifs-containing protein 1", "gene_name": "GPALPP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARDLIGPALPPGFKARGTAEDEERDPSPVAGPALPPNYKSSSSDSSDSDEDSSSLYEEGNQESEEDDSGPTARKQRKNQDDDDDDDDGFFGPALPPGFKKQDDSPPRPIIGPALPPGFIKSTQKSDKGRDDPGQQETDSSEDEDIIGPMPAKGPVNYNVTTEFEKRAQRMKEKLTKGDDDSSKPIVRESWMTELPPEMKDFGLGPRTFKRRADDTSGDRSIWTDTPADRERKAKETQEARKSSSKKDEEHILSGRDKRLAEQVSSYNESKRSESLMDIHHKKLKSKAAEDKNKPQERIPFDRDKDLKVNRFDEAQKKALIKKSRELNTRFSHGKGNMFL", "length": 340 }, "evidence": [ { "id": "A0A287A3Y1", "url": "https://omabrowser.org/oma/group/A0A287A3Y1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VFF2-1", "protein_name": "DUF3752 domain-containing protein", "gene_name": "CG3641", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSSDDNSSDSNSSSDERQRKRKLKKHSKDVDKSKKKKSKKHKKEKRRHKEKKRSKHEEEPPVPYTQPPHLINASPPDVATNNEDSFGPALPPHLRKTQQPELPEQSQPAPQPQAMIGPVLPSNLTREKSPTKEAEAEDDDDLAGTFGPLPNASQVALEERALALKLAALEGGGLGTSTDQDVREEWMLELPDVGLKSGLAALSNMKRTFYQGKERPDFSDRSSWTKTPQSEADAAASGPKSLSSKELEQMAQVKYEQQRDDEQESMAKRHKKKHKREESLVELHQKKLRKEQREKEKELAASGSKPERRPFSRDVDLKLNKIDKNQTKQIVDKAKILNTKFSRGQAKYL", "length": 349 }, "evidence": [ { "id": "A0A287A3Y1", "url": "https://omabrowser.org/oma/group/A0A287A3Y1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A3Y1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A3Y1" }, { "id": "PF12572", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12572" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF3752", "eco_id": "ECO_0000259", "start_pos": 204, "end_pos": 340, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 165, "end_pos": 167 }, { "start_pos": 188, "end_pos": 190 }, { "start_pos": 276, "end_pos": 278 } ] }, "class_list": [], "section_stats": [ { "table_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A419-1", "uniprot_ac": "A0A287A419", "uniprot_id": "A0A287A419_PIG", "mass": { "chemical_mass": 65851.0, "monoisotopic_mass": 65851.0 }, "refseq": {}, "gene_names": [ { "name": "TCERG1L", "type": "recommended", "evidence": [ { "id": "A0A287A419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A419" } ] } ], "protein_names": [ { "name": "Transcription elongation regulator 1-like protein", "type": "recommended", "evidence": [ { "id": "A0A287A419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A419/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A419", "url": "https://www.uniprot.org/uniprotkb/A0A287A419" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TCERG1L", "url": "https://www.uniprot.org/uniprotkb/A0A287A419", "locus": { "chromosome": "14", "start_pos": 139774199, "end_pos": 139954817, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037698", "url": "https://www.ensembl.org/id/ENSSSCG00000037698" } ] } } ], "crossref": [ { "id": "A0A287A419", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A419", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037698", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037698", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00201", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00201", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002713", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002713", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036517", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036517", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045148", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045148", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RLFHGYE", "url": "https://omabrowser.org/oma/group/RLFHGYE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15377", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15377", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15377:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15377:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01846", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01846", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23517", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23517", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A419", "url": "https://www.uniprot.org/uniprotkb/A0A287A419", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A419-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A419-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLVGARLQRRRRQLQQQQQQQQPRRRQPLLWPMNADPPPPPPPPWVWMVPGSAGLLRLGAGVAPPPVLLASAQPPAAPLLPGLPGWQAPGEPFLPLLPLPSAPDHAAAAAVHHYPLLNGQWLFGGHSPSVGLSPSSAVELVPIFPHVCPSVLAPSVGKSWIDKRMPNCKIFFNNAFALDSTWMYPEESRLFHGHDKPQLLGNQVALSLSRPAPASRPLPTVVLTPQPIPGGCHNSLKPVGSSPTIAIAAAAAAMVSVDAERRGGPSPSSVQPCHFLTLAPIKIPLRKASFSDKSREHSRAPCPPALMLHTERKSPAEDGEDKAPPSILVTGEDRAAKGTRPVASTPVPGSPWCVVWTGDDRVFFFNPTMQLSVWEKPLDLRHRGDLNRIIEDPPHKRKLEAAPGDPSDGSSSDDGREAPDVKTKRNRTEGHMSPGPEAAGSGDTGTKTPPQILLPLEERVTHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNSEERKQIFEQFVKTRIKEEYKEKKSKLLLAKEEFKKLLEESKLSPRSTFKEFAEKYGRDQRFRLVQKRKDQEHFFNQFILILKKRDKENRLRLRKMR", "length": 592, "header": "tr|A0A287A419-1|A0A287A419_PIG Isoform 1 of Transcription elongation regulator 1-like protein OS=Sus scrofa OX=9823 GN=TCERG1L PE=4 SV=1 CANONICAL=A0A287A419-1" }, "isoforms": [ { "isoform_ac": "A0A287A419-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A419/entry#A0A287A419-1", "sequence": { "sequence": "MLVGARLQRRRRQLQQQQQQQQPRRRQPLLWPMNADPPPPPPPPWVWMVPGSAGLLRLGAGVAPPPVLLASAQPPAAPLLPGLPGWQAPGEPFLPLLPLPSAPDHAAAAAVHHYPLLNGQWLFGGHSPSVGLSPSSAVELVPIFPHVCPSVLAPSVGKSWIDKRMPNCKIFFNNAFALDSTWMYPEESRLFHGHDKPQLLGNQVALSLSRPAPASRPLPTVVLTPQPIPGGCHNSLKPVGSSPTIAIAAAAAAMVSVDAERRGGPSPSSVQPCHFLTLAPIKIPLRKASFSDKSREHSRAPCPPALMLHTERKSPAEDGEDKAPPSILVTGEDRAAKGTRPVASTPVPGSPWCVVWTGDDRVFFFNPTMQLSVWEKPLDLRHRGDLNRIIEDPPHKRKLEAAPGDPSDGSSSDDGREAPDVKTKRNRTEGHMSPGPEAAGSGDTGTKTPPQILLPLEERVTHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNSEERKQIFEQFVKTRIKEEYKEKKSKLLLAKEEFKKLLEESKLSPRSTFKEFAEKYGRDQRFRLVQKRKDQEHFFNQFILILKKRDKENRLRLRKMR", "length": 592, "header": "tr|A0A287A419-1|A0A287A419_PIG Isoform 1 of Transcription elongation regulator 1-like protein OS=Sus scrofa OX=9823 GN=TCERG1L PE=4 SV=1 CANONICAL=A0A287A419-1" }, "locus": { "chromosome": "14", "start_pos": 139954651, "end_pos": 139774873, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043189.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043189.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038501.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038501.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A419", "url": "https://www.uniprot.org/uniprotkb/A0A287A419" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A2R8QK73-1", "protein_name": "Transcription elongation regulator 1-like protein", "gene_name": "tcerg1l", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MIPVQRVKAQPQLWHVSAEAPPWLWMVPTTTGLCRVGSAPPVLISSRPPPVIQAVSGWQMSCDPFVPVMRAAAAEPATISQFSLPSVQWEMPSRPHVLGFQPSASVDLLPVFPHVYRTILPPHYSKGWVEKRRVPDYKFYLNNTLALETTWISPEEMGIFQHQEKPLLRTNQAALSICRPSAASRNIHTLLLTPRRISGCPMAIKRVGSSKRVSLAAEAMMAMDCDVTQGPSVSSAHPLHLLSLSPIKLPFLMAPQAGRRRRWENLLGPVLPSQITAVTSLAAPGVTLLTGNWKKQRTADKMLELKKPSCTNALVLHRNPNPEAKAEDEPFKVSMDEDILPKDKRPVASTPIPGSPWCVVWTGDDRVFFFNPTMHLSVWEKPVDLKDRGDLNRIIEDPPHKRKKDDDSSNSSSGDEEDDEEHNSKSKRYKLDHSVDCDEDGKNGSSHRMVLPLELRIAHFRDMLLERGVSAFSTWEKELHKVVFDPRYLLLNPEQRKQIYDQFVKARMNEEHKEKKCKLQQAKEEYKKLLEESKITSKSTFKDFSEKYGKDPRFKQVQKRKDQELFFSQFINTLKKRDKENRIRLRKMR", "length": 589 }, "evidence": [ { "id": "A0A287A419", "url": "https://omabrowser.org/oma/group/A0A287A419/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D4AE82-1", "protein_name": "Transcription elongation regulator 1-like protein", "gene_name": "Tcerg1l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLAGARLQRRRRQLQQPQQPRWPQPLPWPMNADPPPPPWVWMVPGTAGLLRLGAGVAPPPVLLPSAQPASAPLLPRLPGWPAPGEPLLPLLPLSSAPDHAAVHHYPLLHGQWLFGGHSPSIGLAPSSAVELVPLFPHVCPSTLSPPVGKSWIDKRMPNYKIFFNNSFALDSTWIYPEESGLFHSHEKTHFLANRVTPSLSRPAPASRPLPTVVLAAQPIPGGCHDSLKPISRGPTITITAATAAAATAMVSVDPEELRGLSPSIMQPCHFLTLTPIRIPLRTAPFSDKSKEHSRAPRPPALMLRAPERKSLVGDKEDKEPPPILVRGEDTAAKGNKPVASTPVPGSPWCVVWTGDDRVFFFNPTMQLSVWEKPVDLQNRGDLKRIIEDPPHKRKLEASATESSDGSSSEDGSEDQSVKTKRNRTESCESPGPEDTQQVDKGPQTPPPQILLPLEERVTHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNSEERKQIFEQFVKTRMKEEYKERKSKLLLAKEEFKKLLEESKVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQFILILKKRDKENRLRLRKMR", "length": 589 }, "evidence": [ { "id": "A0A287A419", "url": "https://omabrowser.org/oma/group/A0A287A419/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3B807-1", "protein_name": "Transcription elongation regulator 1-like protein", "gene_name": "Tcerg1l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLAGARLQRRRRQLQQPQQPRWRQPLPWPMNADPPPPPWVWMVPGTAGLLRLGAGVAPPPVLLASAQPASAPLLPRLPGWPAPGEPLLPLLPLSSAPDHAAVHHYPLLHGQWLFGGHSPSIGLAPSSAVELVPLFPHVCPSTLSPPVGKNWIDKRMPNYKIFFNNPFALDSTWMYPEESVLFHSHEKTHFLANQVTPSLSRPTPASRPLPTVVLAAQPIPGGCHDSLKPISRGPTITITAATAAAAATAMVSVDPEELRGLSPSIMQPCHFLTLTPIRIPFRTAPFSDKGKEHSRAPRSPALMLRAPERKSLVGDKEDKEPPPILVRGEETAAKGNKPVASTPVPGSPWCVVWTGDDRVFFFNPTMQLSVWEKPVDLQNRGDLKRIIEDPPHKRKLEASATESSDGSSSDDGSEDQSVKTKRNRTESCEGPGPEDTHQVDKGPQTPPPQILLPLEERVTHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNSEERKQIFEQFVKTRIKEEYKERKSKLLLAKEEFKKLLEESKVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQFILILKKRDKENRLRLRKMR", "length": 590 }, "evidence": [ { "id": "A0A287A419", "url": "https://omabrowser.org/oma/group/A0A287A419/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5VWI1-1", "protein_name": "Transcription elongation regulator 1-like protein", "gene_name": "TCERG1L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQAGARFQRRRRQLQQQQPRRRQPLLWPMDAEPPPPPPWVWMVPGSAGLLRLSAGVVVPPVLLASAPPPAAPLLPGLPGWPAPSEPVLPLLPLPSAPDSAAAAAAHPFPALHGQWLFGGHSPSLGLPPSSTVELVPVFPHLCPSALATPIGKSWIDKRIPNCKIFFNNSFALDSTWIHPEESRFFHGHEKPRLLANQVAVSLSRPAPASRPLPTVVLAPQPIPGGCHNSLKVTSSPAIAIATAAAAAMVSVDPENLRGPSPSSVQPRHFLTLAPIKIPLRTSPVSDTRTERGRVARPPALMLRAQKSRDGDKEDKEPPPMLGGGEDSTARGNRPVASTPVPGSPWCVVWTGDDRVFFFNPTMHLSVWEKPMDLKDRGDLNRIIEDPPHKRKLEAPATDNSDGSSSEDNREDQDVKTKRNRTEGCGSPKPEEAKREDKGTRTPPPQILLPLEERVTHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNSEERKQIFEQFVKTRIKEEYKEKKSKLLLAKEEFKKLLEESKVSPRTTFKEFAEKYGRDQRFRLVQKRKDQEHFFNQFILILKKRDKENRLRLRKMR", "length": 586 }, "evidence": [ { "id": "A0A287A419", "url": 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"pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 426, "end_pos": 428, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A419-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 592, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A419-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A419" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A419", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A419" }, { "id": "PS51676", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51676" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FF", "eco_id": "ECO_0000259", "start_pos": 456, "end_pos": 509, "start_aa": 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"MGVKTFTHSSSSHSQEMLGKLNMLRNDGHFCDITIRVQDKIFRAHKVVLAACSDFFRTKLVGQAEDENKNVLDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSILWNTPNSQPEKSLDAGQENNSNCNFTSRDGSISPVSSECSVVERTIPVCRESRRKRKSYIVMSPESPVKCSTQTSSPQVLNSSASYSENRNQPVDSSLAFPWTFPFGIDRRIQPDKVKQAEGTRTLELPGPSETGRRMPDYVTCESTKTALPLGTEEDVRVKVERLSDEEVHEEVSQPVSASQSSLSDQQTVPGSEQVQEDLLISPQSSSIGSVDEGVTEGLPTLQSTSSTNAHADDDDRLENVQYPYQLYIAPSTSSTERPSPNGPDRPFQCPTCGVRFTRIQNLKQHMLIHSGIKPFQCDRCGKKFTRAYSLKMHRLKHEGKRCFRCQICSATFTSFGEYKHHMRVSRHIIRKPRIYECKTCGAMFTNSGNLIVHLRSLNHEASELANYFQSSDFLVPDYLNQEQEETLVQYDLGEHSFESNSSVQMPVISQVSSTQNCESTFPLGSLGGLAEKEEEMPEQPKISAGAEATRIDPPKSELSSITIE", "length": 616, "header": "tr|A0A287A436-1|A0A287A436_PIG Isoform 1 of Zinc finger and BTB domain-containing protein 44 OS=Sus scrofa OX=9823 GN=ZBTB44 PE=4 SV=1 CANONICAL=A0A287A436-1" }, "locus": { "chromosome": "9", "start_pos": 56973630, "end_pos": 56954243, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037739.2", "url": "https://www.ensembl.org/id/ENSSSCT00000037739.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038731.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038731.1" } ] } }, { "isoform_ac": "A0A8D0NC07-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A436/entry#A0A8D0NC07-1", "sequence": { "sequence": "MGVKTFTHSSSSHSQEMLGKLNMLRNDGHFCDITIRVQDKIFRAHKVVLAACSDFFRTKLVGQAEDENKNVLDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSILWNTPNSQPEKSLDAGQENNSNCNFTSRDGSISPVSSECSVVERTIPVCRESRRKRKSYIVMSPESPVKCSTQTSSPQVLNSSASYSENRNQPVDSSLAFPWTFPFGIDRRIQPDKVKQAEGTRTLELPGPSETGRRMPDYVTCESTKTALPLGTEEDVRVKVERLSDEEVHEEVSQPVSASQSSLSDQQTVPGSEQVQEDLLISPQSSSIGSVDEGVTEGLPTLQSTSSTNAHADDDDRLENVQYPYQLYIAPSTSSTERPSPNGPDRPFQCPTCGVRFTRIQNLKQHMLIHSGIKPFQCDRCGKKFTRAYSLKMHRLKHEGKRCFRCQICSATFTSFGEYKHHMRVSRHIIRKPRIYECKTCGAMFTNSGNLIVHLRSLNHEASELANYFQSSDFLVPDYLNQEQEETLVQYDLGEHSFESNSSVQMPVISQYHSGGKEPW", "length": 571, "header": "tr|A0A8D0NC07-1|A0A287A436_PIG Computationally mapped isoform of Zinc finger and BTB domain-containing protein 44 OS=Sus scrofa OX=9823 GN=ZBTB44 PE=4 SV=1 CANONICAL=A0A287A436-1" }, "locus": { "chromosome": "9", "start_pos": 56973630, "end_pos": 56953603, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039620.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039620.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056381.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056381.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0NC07", "url": "https://www.uniprot.org/uniprotkb/A0A8D0NC07" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8M2BJS0-1", "protein_name": "Zinc finger and BTB domain-containing protein 44", "gene_name": "zbtb44", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVKTFTHNSPSHSQELLDKLNTLRSEGHFCDVTIRVQGQLFSAHKVVLACCSDFLRAKLSGKPAEEDPVIVGEDNKHVLDLQHVTVAGFAPLLEYAYTSTLSISTENIIDVLAAASYMQMFAVANTCSEFMKSSILWNAASSGAGAPGSIQPPGLHRPQEPPEGHASCTLAPVDALSPSPVSSECSVQERPIPVCRESRRKRKGFASPQPASSTSPQVPNPSPSSSSFPESSAQALEPSLAFSWTYPFGVDRRFTPEKSKLPDGLLETSGASGQDSSGRALVEYLSCEGPRGLGVGGATGIEEEEEEDVQVKVERLSDEEVHEEASQPVSAPHSSLSDQQTVPGNEHNQEDLLISPQSSSIGSMDEGVTEGLQSMQGTPNTTGHMEEDERLENVQYPYHLYISPSTRPGLNGPERPFQCPTCGVRFTRIQNLKQHMLIHSGIKPFQCDRCGKKFTRAYSLKMHRLKHEGKRCFRCQICSATFTSFGEYKHHMRVSRHIIRKPRIYECKTCGAMFTNSGNLIVHLRSLNHEASELANYFQTSEFLLPDYLSHMQEEEGLGHFEISEQTFEASSSSSSVQTPVISQVSSTMNYDTHTSAPPSQTPNPRSGNGGEDAAGDLQKPTTAVTSLQDPEEDVGEKERGARKKKKRLVPITIE", "length": 656 }, "evidence": [ { "id": "A0A287A436", "url": "https://omabrowser.org/oma/group/A0A287A436/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1MYU9-1", "protein_name": "Zinc finger and BTB domain-containing protein 44", "gene_name": "ZBTB44", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGVKTFTHSSSSHSQEMLGKLNMLRNDGHFCDITIRVQDKIFRAHKVVLAACSDFFRTKLVGQAEDENKNVLDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSILWNTPNSQPEKGLDAGQENNSNCNFTSRDGSISPVSSECSVVERTIPVCRESRRKRKSYIVMSPESPVKCSTQTSSPQALNSSTSYSENRNQPVDSSLAFPWTFPFGIDRRNQPDKVKQAENTRTLELPGPSETGRRMTDYVTCESTKTALPLGAEEDVRVKVERLSDEEVHEEVSQPVSASQSSLSDQQTVPGSEQVQEDLLISPQSSSIGSVDEGITEGLPTLQGTSSTSAHVDDDDRLENVQYPYQLYIAPSTSSTERPSPNGPDRPFQCPTCGVRFTRIQNLKQHMLIHSGIKPFQCDRCGKKFTRAYSLKMHRLKHEGKRCFRCQICSATFTSFGEYKHHMRVSRHIIRKPRIYECKTCGAMFTNSGNLIVHLRSLNHEASELANYFQSSDFLVPDYLNQEQEETLVQYDLGEHSFESNSSVQMPVISQVSSTQNCESTFPLGSLGLTEKEEEMPEQPKTSACAEATRDDPPKSELSSITIE", "length": 615 }, "evidence": [ { "id": "A0A287A436", "url": "https://omabrowser.org/oma/group/A0A287A436/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3SWU4-1", "protein_name": "Zinc finger and BTB domain-containing protein 44", "gene_name": "Zbtb44", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGVKTFTHSSSSHSQEMLGKLNMLRNDGHFCDITIRVQDRIFRAHKVVLAACSDFFRTKLVGQTEDENKNVLDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSILWNTPNSQPEKGLDAGQENSSNCNFTSRDGSISPVSSECSAVERTIPVCRESRRKRKSYIVMSPESPVKCSTQTNSPQVLNSSASYAENRNQPVDSSLAFPWTFPFGIDRRIQPEKAKQAENTRTLELPGPSEAGRRMADYVTCESTKTTLPLGTEEDVRVKVERLSDEEVHEEVSQPVSASQSSLSDQQTVPGSEPVQEDLLISPQSSSIGSVDEGVTEGLPTLQSTSSTNAHADEDDRLENVQYPYQLYIAPSTSSTERPSPNGPDRPFQCPTCGVRFTRIQNLKQHMLIHSGIKPFQCDCCGKKFTRAYSLKMHRLKHEVIS", "length": 453 }, "evidence": [ { "id": "A0A287A436", "url": "https://omabrowser.org/oma/group/A0A287A436/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R0A2-1", "protein_name": "Zinc finger and BTB domain-containing protein 44", "gene_name": "Zbtb44", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVKTFTHSSSSHSQEMLGKLNMLRNDGHFCDITIRVQDKIFRAHKVVLAACSDFFRTKLVGQTEDENKNVLDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSILWNTPNSQPEKSLDAGQENSSNCNFTSRDGSISPVSSECSAVERTIPVCRESRRKRKSYIVMSPESPVKCSTQTSSPQVLNSSASYAENRSQPVDSSLAFPWTFPFGIDRRIQPEKAKQAENTRTLELPGPSEAGRRVADYVTCESTKPTLPLGTEEDVRVKVERLSDEEVHEEVSQPVSASQSSLSDQQTVPGSEPVQEDLLISPQSSSIGSVDEGVTEGLPTLQSTSSTNAHADDDDRLENVQYPYQLYIAPSTSSTERPSPNGPDRPFQCPTCGVRFTRIQNLKQHMLIHSGIKPFQCDCCGKKFTRAYSLKMHRLKHEVIS", "length": 453 }, "evidence": [ { "id": "A0A287A436", "url": "https://omabrowser.org/oma/group/A0A287A436/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287A436", "url": "https://www.uniprot.org/uniprotkb/A0A287A436" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287A436", "url": "https://www.uniprot.org/uniprotkb/A0A287A436" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A436", "url": "https://www.uniprot.org/uniprotkb/A0A287A436" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287A436", "url": "https://www.uniprot.org/uniprotkb/A0A287A436" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 147, "end_pos": 149, "annotation": "n_glycosylation_sequon" }, { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" }, { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 552, "end_pos": 554, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A436", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A436" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 98, "start_aa": "Cys", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287A436", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A436" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 399, "end_pos": 426, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 147, "end_pos": 149 }, { "start_pos": 152, "end_pos": 154 }, { "start_pos": 209, "end_pos": 211 }, { "start_pos": 552, "end_pos": 554 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A450-1", "uniprot_ac": "A0A287A450", "uniprot_id": "A0A287A450_PIG", "mass": { "chemical_mass": 143738.0, "monoisotopic_mass": 143738.0 }, "refseq": {}, "gene_names": [ { "name": "USP31", "type": "recommended", "evidence": [ { "id": "A0A287A450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A450" } ] } ], "protein_names": [ { "name": "ubiquitinyl hydrolase 1", "type": "recommended", "evidence": [ { "id": "A0A287A450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A450/entry#names_and_taxonomy" } ] }, { "name": "3.4.19.12", "type": "synonym", "evidence": [ { "id": "A0A287A450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A450/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A450", "url": "https://www.uniprot.org/uniprotkb/A0A287A450" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "USP31", "url": "https://www.uniprot.org/uniprotkb/A0A287A450", "locus": { "chromosome": "3", "start_pos": 23116007, "end_pos": 23035426, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030424", "url": "https://www.ensembl.org/id/ENSSSCG00000030424" } ] } } ], "crossref": [ { "id": "ENSSSCG00000030424", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030424", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02674", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02674", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018200", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018200", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21646", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21646", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21646:SF44", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21646:SF44", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00443", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00443", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A450", "url": "https://www.uniprot.org/uniprotkb/A0A287A450", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A450-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A450-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKVTAPGSGPPPPPAVAAAGGKEKRSFSKRLFRSGRAGGGGSGAGGPGPTAPSSPSSARSVGSFMSRVLKTLSTLSHLSSEGAAPDRGGLRSCFPPGPAAAPTPPPCPPPPASPAPPASAAEPVPGVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDPEQPAGRGSQGQGEVTEQLAHLVRALWTLEYTPQHSRDFKSIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLNHAVKQSGQPPLKPPSETDMMPEGPSFPVCSTFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMETKIPTDQIVLTEMYYDGFHRSFCDTDDLETVHESDCIFAFETPEIFRPEGILSQRGIHLNNNLNHLKFGLDHYRLSSAQAAAKQGKADSAATRAGSDKIVLLVCNRACTGQQGKRFGLPFVLHLEKTVAWDLLQKEILEKMKYFLRPTVCIQVCPFSLRVVSVVGITYLLPQEEQPLCHPTVERALKSCGPGGTAHVKLVVEWDKETKDFLFVNTEEEYIPDAESVRLQRERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDKRTKLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQRRTAIPSWSANSSVAGSTSSSLCEHWVSRLPGSKQASVTSAASSRRTSLASLSESVEMTGERSEDDGGFSTRPFVRSVQRQSLSARSSVTSPLAVNENCMRPSWSLSAKLQMRSNSPSRFSGDSPIHSSASTLEKIGEAVDDKVSISCFGSLRNLASLYQDSSDSRREHKAVGRAPLAVMEGVFKDEADARRLNPGVADTQSKSPAQGDPLPPVSVPFDNNNQIAYVDQSDSVDSSPVKEVKPPGHAGSLAKKPESTAKRSPSSKGASEPERSLRKGRPALASQESSLSSPSPSSPGPVKVSVKPSRSRSKAESSSRASGRHASPAPTPKKDSSPKSQASASSPSLLKQKSASSLAYPASSASPKKASGPAPRGPLPPGKSRTSDRSLSREGSRQSLASDRAGVPASSKPSSPRGSQARAGDGRGDGRHVRSSSMASLRSPSVSGKAGLKRDSKSEDKGLSFFKSALRQKETRRSTDLGKTSLLSKKAGGDDKADRGSPKPKATAGAQEQPAPRDPASAKHSLLSARKAKSSQLDPGAPASPSCRQSAETASKKLPSSMPTSARPSPKPQ", "length": 1333, "header": "tr|A0A287A450-1|A0A287A450_PIG Isoform 1 of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=USP31 PE=4 SV=2 CANONICAL=A0A287A450-1" }, "isoforms": [ { "isoform_ac": "A0A287A450-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A450/entry#A0A287A450-1", "sequence": { "sequence": "MSKVTAPGSGPPPPPAVAAAGGKEKRSFSKRLFRSGRAGGGGSGAGGPGPTAPSSPSSARSVGSFMSRVLKTLSTLSHLSSEGAAPDRGGLRSCFPPGPAAAPTPPPCPPPPASPAPPASAAEPVPGVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDPEQPAGRGSQGQGEVTEQLAHLVRALWTLEYTPQHSRDFKSIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLNHAVKQSGQPPLKPPSETDMMPEGPSFPVCSTFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMETKIPTDQIVLTEMYYDGFHRSFCDTDDLETVHESDCIFAFETPEIFRPEGILSQRGIHLNNNLNHLKFGLDHYRLSSAQAAAKQGKADSAATRAGSDKIVLLVCNRACTGQQGKRFGLPFVLHLEKTVAWDLLQKEILEKMKYFLRPTVCIQVCPFSLRVVSVVGITYLLPQEEQPLCHPTVERALKSCGPGGTAHVKLVVEWDKETKDFLFVNTEEEYIPDAESVRLQRERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDKRTKLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQRRTAIPSWSANSSVAGSTSSSLCEHWVSRLPGSKQASVTSAASSRRTSLASLSESVEMTGERSEDDGGFSTRPFVRSVQRQSLSARSSVTSPLAVNENCMRPSWSLSAKLQMRSNSPSRFSGDSPIHSSASTLEKIGEAVDDKVSISCFGSLRNLASLYQDSSDSRREHKAVGRAPLAVMEGVFKDEADARRLNPGVADTQSKSPAQGDPLPPVSVPFDNNNQIAYVDQSDSVDSSPVKEVKPPGHAGSLAKKPESTAKRSPSSKGASEPERSLRKGRPALASQESSLSSPSPSSPGPVKVSVKPSRSRSKAESSSRASGRHASPAPTPKKDSSPKSQASASSPSLLKQKSASSLAYPASSASPKKASGPAPRGPLPPGKSRTSDRSLSREGSRQSLASDRAGVPASSKPSSPRGSQARAGDGRGDGRHVRSSSMASLRSPSVSGKAGLKRDSKSEDKGLSFFKSALRQKETRRSTDLGKTSLLSKKAGGDDKADRGSPKPKATAGAQEQPAPRDPASAKHSLLSARKAKSSQLDPGAPASPSCRQSAETASKKLPSSMPTSARPSPKPQ", "length": 1333, "header": "tr|A0A287A450-1|A0A287A450_PIG Isoform 1 of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=USP31 PE=4 SV=2 CANONICAL=A0A287A450-1" }, "locus": { "chromosome": "3", "start_pos": 23116004, "end_pos": 23035625, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061414.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061414.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038667.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038667.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 104, "start_aa": "Thr", "end_pos": 104, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr104", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1091, "start_aa": "Thr", "end_pos": 1091, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1091", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 51, "start_aa": "Thr", "end_pos": 51, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr51", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A450", "url": "https://www.uniprot.org/uniprotkb/A0A287A450" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A450", "url": "https://www.uniprot.org/uniprotkb/A0A287A450" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A287A450", "url": "https://www.uniprot.org/uniprotkb/A0A287A450" } ], "pmid": "" }, { "name": "protein deubiquitination", "id": "GO:0016579", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016579", "evidence": [ { "database": "UniProtKB", "id": "A0A287A450", "url": "https://www.uniprot.org/uniprotkb/A0A287A450" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cysteine-type deubiquitinase activity", "id": "GO:0004843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004843", "evidence": [ { "database": "UniProtKB", "id": "A0A287A450", "url": "https://www.uniprot.org/uniprotkb/A0A287A450" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 774, "end_pos": 776, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A450" }, { "id": "PS50235", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50235" } ], "ann_type": "Domain_Extent_Annotation", 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"exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, 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"table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A461-1", "uniprot_ac": "A0A287A461", "uniprot_id": "A0A287A461_PIG", "mass": { "chemical_mass": 40618.0, "monoisotopic_mass": 40618.0 }, "refseq": { "ac": "XP_005668942", "name": "chondroadherin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005668942" }, "gene_names": [ { "name": "CHAD", "type": "recommended", "evidence": [ { "id": "A0A287A461", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A461" } ] }, { "name": "CHAD", "type": "synonym", "evidence": [ { "id": "XP_005668942", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005668942" } ] } ], "protein_names": [ { "name": "Chondroadherin", "type": "synonym", "evidence": [ { "id": "A0A287A461", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A461/entry#names_and_taxonomy" } ] }, { "name": "chondroadherin", "type": "synonym", "evidence": [ { "id": "XP_005668942", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005668942" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A461", "url": "https://www.uniprot.org/uniprotkb/A0A287A461" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CHAD", "url": "https://www.uniprot.org/uniprotkb/A0A287A461", "locus": { "chromosome": "12", "start_pos": 26742494, "end_pos": 26746214, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017569", "url": "https://www.ensembl.org/id/ENSSSCG00000017569" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017569", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017569", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100624069", "url": "https://www.ncbi.nlm.nih.gov/gene/100624069", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624069", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624069", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QHCQVRE", "url": "https://omabrowser.org/oma/group/QHCQVRE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A461", "url": "https://www.orthodb.org/?gene=A0A287A461", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24366", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24366", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24366:SF161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24366:SF161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005668942", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005668942", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A461", "url": "https://www.uniprot.org/uniprotkb/A0A287A461", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A461-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A461-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARQMLLLSLGLLAGLLPALAACPQNCHCHGDLQHVICDKVGLQKIPKVSEKTKLLNLQRNNFPVLAANSFRAMPNLVSLHLQHCQIREVASGAFRGLKQLIYLYLSHNDIRVLRAGAFDDLTELTYLYLDHNKVTELPRGLLSPLVNLFILQLNNNKIRELRAGAFQGAKDLRWLYLSENSLSSLQPGSLDDVENLAKFYLDRNQLSSYPSAALSKLRVVEELKLSHNPLKSIPDHAFQSFGRYLETLWLDNTNLEKFSDGAFLGVTTLKHVHLENNRLSQLPSNFPFDNLETLTLTNNPWKCTCQLRGLRRWLEAKTSRPDATCASPAKFRGQHIRDTDAFRGCKFPTKRSKKAGRH", "length": 359, "header": "tr|A0A287A461-1|A0A287A461_PIG Isoform 1 of Chondroadherin OS=Sus scrofa OX=9823 GN=CHAD PE=3 SV=1 CANONICAL=A0A287A461-1" }, "isoforms": [ { "isoform_ac": "A0A287A461-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A461/entry#A0A287A461-1", "sequence": { "sequence": "MARQMLLLSLGLLAGLLPALAACPQNCHCHGDLQHVICDKVGLQKIPKVSEKTKLLNLQRNNFPVLAANSFRAMPNLVSLHLQHCQIREVASGAFRGLKQLIYLYLSHNDIRVLRAGAFDDLTELTYLYLDHNKVTELPRGLLSPLVNLFILQLNNNKIRELRAGAFQGAKDLRWLYLSENSLSSLQPGSLDDVENLAKFYLDRNQLSSYPSAALSKLRVVEELKLSHNPLKSIPDHAFQSFGRYLETLWLDNTNLEKFSDGAFLGVTTLKHVHLENNRLSQLPSNFPFDNLETLTLTNNPWKCTCQLRGLRRWLEAKTSRPDATCASPAKFRGQHIRDTDAFRGCKFPTKRSKKAGRH", "length": 359, "header": "tr|A0A287A461-1|A0A287A461_PIG Isoform 1 of Chondroadherin OS=Sus scrofa OX=9823 GN=CHAD PE=3 SV=1 CANONICAL=A0A287A461-1" }, "locus": { "chromosome": "12", "start_pos": 26746015, "end_pos": 26742501, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060891.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060891.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038752.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038752.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A461", "url": "https://www.uniprot.org/uniprotkb/A0A287A461" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624069", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624069", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1NAT8-1", "protein_name": "Chondroadherin", "gene_name": "CHAD", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNRSGCFLSVLSLLACLISVVQACPPSCHCHGGDLQHVICDNAGLKKIPKVPEQTRLLNLQKNNFPVLPTNGFRDMKKLVSLHLQSSRIKEISTGAFRGLKNLVYLYLTDNQISVIKPGAFDDLSELTYLYLDQNKIPDLSKGILSPLVNLFILHLGSNKIRELKAGVFSGAKDLRWLFLSDNSLTNLLPGALEDVENLAVLHLDKNQLSSYPVSAMSKLRVLEELKLSHNPIEVIPDNAFQSFGRYMQTLHLDNMKLKKFADNAFAGVTVLKTAHLENNRLTQLPRNFPFDKMETLTLSRNAWHCNCQLAHLRKWLKGNRTRTEDTCSTPAQYRGQSIRDTPALRTCKLPTKRSRKGSRH", "length": 361 }, "evidence": [ { "id": "A0A287A461", "url": "https://omabrowser.org/oma/group/A0A287A461/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HBE8-1", "protein_name": "Chondroadherin", "gene_name": "Chad", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARVLLLSLGLFAILLPALAACPQNCHCHGDLQHVICDKVGLQKIPKVSESTKLLNLQRNNFPVLAANSFRTMPNLVSLHLQHCNIREVATGAFRGLKQLIYLYLSHNDIRVLRAGAFDDLTELTYLYLDHNKVSELPRGLLSPLVNLFILQLNNNKIRELRAGAFQGAKDLRWLYLSENALSSLQPGALDDVENLAKFHLDKNQLSSYPSAALSKLRVVEELKLSHNPLKSIPDNAFQSFGRYLETLWLDNTNLEKFSDGAFLGVTTLKHVHLENNRLNQLPSTFPFDNLETLTLTNNPWKCTCQLRGLRRWLEAKTSRPDATCSSPAKVKGQRIRDTDALRSCKSPTKRSKKAGRH", "length": 358 }, "evidence": [ { "id": "A0A287A461", "url": "https://omabrowser.org/oma/group/A0A287A461/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O15335-1", "protein_name": "Chondroadherin", "gene_name": "CHAD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVRPMLLLSLGLLAGLLPALAACPQNCHCHSDLQHVICDKVGLQKIPKVSEKTKLLNLQRNNFPVLAANSFRAMPNLVSLHLQHCQIREVAAGAFRGLKQLIYLYLSHNDIRVLRAGAFDDLTELTYLYLDHNKVTELPRGLLSPLVNLFILQLNNNKIRELRAGAFQGAKDLRWLYLSENALSSLQPGALDDVENLAKFHVDRNQLSSYPSAALSKLRVVEELKLSHNPLKSIPDNAFQSFGRYLETLWLDNTNLEKFSDGAFLGVTTLKHVHLENNRLNQLPSNFPFDSLETLALTNNPWKCTCQLRGLRRWLEAKASRPDATCASPAKFKGQHIRDTDAFRSCKFPTKRSKKAGRH", "length": 359 }, "evidence": [ { "id": "A0A287A461", "url": "https://omabrowser.org/oma/group/A0A287A461/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O55226-1", "protein_name": "Chondroadherin", "gene_name": "Chad", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARALLFSLVFLAILLPALAACPQNCHCHGDLQHVICDKVGLQKIPKVSETTKLLNLQRNNFPVLAANSFRTMPNLVSLHLQHCNIREVAAGAFRGLKQLIYLYLSHNDIRVLRAGAFDDLTELTYLYLDHNKVSELPRGLLSPLVNLFILQLNNNKIRELRAGAFQGAKDLRWLYLSENALSSLQPGSLDDVENLAKFHLDKNQLSSYPSAALSKLRVVEELKLSHNPLKSIPDNAFQSFGRYLETLWLDNTNLEKFSDAAFSGVTTLKHVHLDNNRLNQLPSSFPFDNLETLTLTNNPWKCTCQLRGLRRWLEAKASRPDATCSSPAKFKGQRIRDTDALRSCKSPTKRSKKAGRH", "length": 358 }, "evidence": [ { "id": "A0A287A461", "url": "https://omabrowser.org/oma/group/A0A287A461/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O70210-1", "protein_name": "Chondroadherin", "gene_name": "Chad", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARVLLLSLVFLAILLPALAACPQNCHCHGDLQHVICDKVGLQKIPKVSETTKLLNLQRNNFPVLAANSFRTVPNLVSLHLQHCNIREVAAGAFRGLKQLIYLYLSHNDIRVLRAGAFDDLTELTYLYLDHNKVSELPRGLLSPLVNLFILQLNNNKIRELRAGAFQGAKDLRWLYLSENALTSLHPGSLDDVENLAKFHLDRNQLSSYPSAALSKLRVVEELKLSHNPLKSIPDNAFQSFGRYLETLWLDNTNLEKFSDAAFAGVTTLKHVHLENNRLNQLPSTFPFDNLETLTLTNNPWKCTCQLRGLRRWLEAKTSRPDATCSSPAKFKGQRIRDTDALRSCKSPTKRSKKAGRH", "length": 358 }, "evidence": [ { "id": "A0A287A461", "url": "https://omabrowser.org/oma/group/A0A287A461/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287A461", "url": "https://www.uniprot.org/uniprotkb/A0A287A461" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "A0A287A461", "url": "https://www.uniprot.org/uniprotkb/A0A287A461" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A461", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A461" }, { "id": "SM00082", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00082" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRCT", "eco_id": "ECO_0000259", "start_pos": 300, "end_pos": 347, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287A461", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A461" }, { "id": "SM00013", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00013" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRNT", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 55, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A498-1", "uniprot_ac": "A0A287A498", "uniprot_id": "A0A287A498_PIG", "mass": { "chemical_mass": 84609.0, "monoisotopic_mass": 84609.0 }, "refseq": {}, "gene_names": [ { "name": "FBXL13", "type": "recommended", "evidence": [ { "id": "A0A287A498", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A498" } ] } ], "protein_names": [ { "name": "F-box and leucine-rich repeat protein 13", "type": "recommended", "evidence": [ { "id": "A0A287A498", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A498/entry#names_and_taxonomy" } ] }, { "name": "Dynein regulatory complex subunit 6", "type": "synonym", "evidence": [ { "id": "A0A287A498", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A498/entry#names_and_taxonomy" } ] }, { "name": "F-box/LRR-repeat protein 13", "type": "synonym", "evidence": [ { "id": "A0A287A498", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A498/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Component of the nexin-dynein regulatory complex (N-DRC), a key regulator of ciliary/flagellar motility which maintains the alignment and integrity of the distal axoneme and regulates microtubule sliding in motile axonemes. Specifically targets CEP192 isoform 3 for ubiquitin-mediated proteolysis and thereby acts as a regulator of microtubule nucleation activity.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A498", "url": "https://www.uniprot.org/uniprotkb/A0A287A498#function" }, { "database": "UniProtKB", "id": "ARBA00058421", "url": "https://www.uniprot.org/uniprotkb/ARBA00058421#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A498", "url": "https://www.uniprot.org/uniprotkb/A0A287A498" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBXL13", "url": "https://www.uniprot.org/uniprotkb/A0A287A498", "locus": { "chromosome": "9", "start_pos": 102976871, "end_pos": 103152572, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037822", "url": "https://www.ensembl.org/id/ENSSSCG00000037822" } ] } } ], "crossref": [ { "id": "A0A287A498", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A498", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037822", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037822", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006553", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006553", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057207", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057207", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13318", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13318", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13318:SF240", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13318:SF240", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A498", "url": "https://www.uniprot.org/uniprotkb/A0A287A498", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A498-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A498-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDP7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDP7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R302", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R302", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R302-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R302-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4E8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VTPELMIKACTFYAGRLLKTHFYTWRERTIPPINEDDPLAEKMEKAAEYYNFRLQRYVFRHWHSYVKAQKEQLKNKLLRIQQMFQCCKLIIILNKWRDKARYKNKKRENELMLKHELQLRKWRSKLKLKVSAKEESICPKQDISEVFLVDEIPAFDISQLPKRAILQIFSYLSLRDMILCGQVNRSWLSMTQMNSLWTGIDFSTVKNIITDKYVVSTLQRWRLNVLRLNFCGCVLRMKTLRSVSLCRNLQELNVSDCPTLTDESMRFISESCPGVLYLNLSNTAITNRTMRLLPRYFHNLQNLSLAYCRKFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRNIANSCSGIMHLTINDMPTLTDNCVKALVEKCHRITSVVFIGAPHISDYTFKALSTCDLRKIRFEGNKRITDACFEFIDKNYPNISHIYMVDCKGLTDGSLKSLSPLKQLTVLNLANCVRIGDMGLIQFLDGPVSTKIRELNLSNCIHLGDASMAKLSERCSNLNYLSLRNCEHLTDLAIEYIVNIFSLVSVDLSGTDISNEGLMILSRHRKLKELSLSECDRITDIGIQAFCKGSMILEHLDVSYCPQLSDEIIKALAIYCINLTSLSIAGCPKISDSAMEILSAKCHYLHILDISGCILLTDKMLEDIQMGCKQLRILKMQYCRLISKEAAKKMLSMVQQQEYSAADPPHWFGYDFEGKPLTEEQDIKPLKDSELTLNESTYSSEEEVAA", "length": 737, "header": "tr|A0A287A498-1|A0A287A498_PIG Isoform 1 of F-box and leucine-rich repeat protein 13 OS=Sus scrofa OX=9823 GN=FBXL13 PE=3 SV=2 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"MQSPRALQDSGARKREDIRTRGRGRWRGQRPSGVRPRRVFRGAHALPRRWRGWRVSAAAKAHLSPHAPPRTFNYILRELPKVPTHVPVCVLGNYRDMGEHRVILPDDVRDFIDNLDRPPGSSYFRYAESSMKNSFGLKYLHRFFNIPFLQLQRETLLRQLETNQLDIDATLEELSVQQETEDQNYDIFLEMMEARSRGHASPPAANGQSPSSGSQSPVVPPSAVSTGSSSPGTPQPAPQPPLHAPSAPPAPSEAPPPVVPAPPPRRSIISRLFGTSPAAEVAPSPPEPAPAAEAPGKVQKVEDFVPEDSLDRSFLEDTAPPKDEKKVAAKVLQDSDSEGEAPGGNPMVAGYQDDVDLEDKPPGRLLMPTGPIPEEKLPPSSEEEAEEVAEHPKATALAPEKCSEPETKRSSAKASRPHRGAAPRTTEPLWSGGTKPPTEGSSRGHEDRRDKQESSESDPEGPIAAQMLSFVMDDPDFESDSDTQRTAGEFPEREDLSDGTDDDAGPVQPPPPAKPPAPTFRLKNDADLFGLGLEETRPKESSGEDKEGKAPSREKKKKKKKSGEEEEKAAKKKSKHKKSKDKAEDKGREERRRRRRPRGPERTAVEELEAFLGGGAPGGHARGGGDYEEL", "length": 630, "header": "tr|A0A287A4C7-1|A0A287A4C7_PIG Isoform 1 of RAB, member RAS onco family like 6 OS=Sus scrofa OX=9823 GN=RABL6 PE=1 SV=1 CANONICAL=A0A287A4C7-1" }, "isoforms": [ { "isoform_ac": "A0A287A4C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4C7/entry#A0A287A4C7-1", "sequence": { "sequence": 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isoform of RAB, member RAS onco family like 6 OS=Sus scrofa OX=9823 GN=RABL6 PE=1 SV=2 CANONICAL=A0A287A4C7-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 995950, "end_pos": 986199, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053738.2", "url": "https://www.ensembl.org/id/ENSSSCT00000053738.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045259.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045259.2" } ] } }, { "isoform_ac": "A0A5G2QCX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4C7/entry#A0A5G2QCX6-1", "sequence": { "sequence": "MWVHQPGPQGHAPWCPLWTSRQPTREWPPGTFNYILRELPKVPTHVPVCVLGNYRDMGEHRVILPDDVRDFIDNLDRPPGSSYFRYAESSMKNSFGLKYLHRFFNIPFLQLQRETLLRQLETNQLDIDATLEELSVQQETEDQNYDIFLEMMEARSRGHASPPAANGQSPSSGSQSPVVPPSAVSTGSSSPGTPQPAPQPPLHAPSAPPAPSEAPPPVVPAPPPRRSIISRLFGTSPAAEVAPSPPEPAPAAEAPGKVQKVEDFVPEDSLDRSFLEDTAPPKDEKKVAAKVLQDSDSEGEAPGGNPMVAGYQDDVDLEDKPPGRLLMPTGPIPEEKLPPSSEEEAEEVAEHPKATALAPEKCSEPETKRSSAKASRPHRGAAPRTTEPLWSGGTKPPTEGSSRGHEDRRDKQESSESDPEGPIAAQMLSFVMDDPDFESDSDTQRTAGEFPEREDLSDGTDDDAGPVQPPPPAKPPAPTFRLKNDADLFGLGLEETRPKESSGEDKEGKAPSREKKKKKKKSGEEEEKAAKKKSKHKKSKDKAEDKGREERRRRRRPRGPERTAVEELEAFLGGGAPGGHARGGGDYEEL", "length": 590, "header": "tr|A0A5G2QCX6-1|A0A287A4C7_PIG Computationally mapped isoform of RAB, member RAS onco family like 6 OS=Sus scrofa OX=9823 GN=RABL6 PE=1 SV=2 CANONICAL=A0A287A4C7-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 994436, "end_pos": 986199, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083839.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083839.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061431.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061431.2" } ] } }, { "isoform_ac": "A0A8W4FJX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4C7/entry#A0A8W4FJX0-1", "sequence": { "sequence": "MQEAESELALDADFLDVYKNCSGVVMMFDITKQWTFNYILRELPKVPTHVPVCVLGNYRDMGEHRVILPDDVRDFIDNLDRPPGSSYFRYAESSMKNSFGLKYLHRFFNIPFLQLQRETLLRQLETNQLDIDATLEELSVQQETEDQNYDIFLEMMEARSRGHASPPAANGQSPSSGSQSPVVPPSAVSTGSSSPGTPQPAPQPPLHAPSAPPAPSEAPPPVVPAPPPRRSIISRLFGTSPAAEVAPSPPEPAPAAEAPGKVQKVEDFVPEDSLDRSFLEDTAPPKDEKKVAAKVLQDSDSEGEAPGGNPMVAGYQDDVDLEDKPPGRLLMPTGPIPEEKLPPSSEEEAEEVAEHPKATALAPEKCSEPETKRSSAKASRPHRGAAPRTTEPLWSGGTKPPTEGSSRGHEDRRDKQESSESDPEGPIAAQMLSFVMDDPDFESDSDTQRTAGEFPEREDLSDGTDDDAGPVQPPPPAKPPAPTFRLKNDADLFGLGLEETRPKESSGEDKEGKAPSREKKKKKKKSGEEEEKAAKKKSKHKKSKDKAEDKGREERRRRRRPRGPERTAVEELEAFLGGGAPGGHARGGGDYEEL", "length": 594, "header": "tr|A0A8W4FJX0-1|A0A287A4C7_PIG Computationally mapped isoform of RAB, member RAS onco family like 6 OS=Sus scrofa OX=9823 GN=RABL6 PE=1 SV=2 CANONICAL=A0A287A4C7-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 995497, "end_pos": 986199, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096881.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096881.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079195.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079195.1" } ] } }, { "isoform_ac": "F1RVY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4C7/entry#F1RVY4-1", "sequence": { "sequence": "MENDPQEAESELALDADFLDVYKNCSGVVMMFDITKQWTFNYILRELPKVPTHVPVCVLGNYRDMGEHRVILPDDVRDFIDNLDRPPGSSYFRYAESSMKNSFGLKYLHRFFNIPFLQLQRETLLRQLETNQLDIDATLEELSVQQETEDQNYDIFLEMMEARSRGHASPPAANGQSPSSGSQSPVVPPSAVSTGSSSPGTPQPAPQPPLHAPSAPPAPSEAPPPVVPAPPPRRSIISRLFGTSPAAEVAPSPPEPAPAAEAPGKVQKVEDFVPEDSLDRSFLEDTAPPKDEKKVAAKVLQDSDSEGEAPGGNPMVAGYQDDVDLEDKPPGRLLMPTGPIPEEKLPPSSEEEAEEVAEHPKATALAPEKCSEPETKRSSAKASRPHRGAAPRTTEPLWSGGTKPPTEGSSRGHEDRRDKQESSESDPEGPIAAQMLSFVMDDPDFESDSDTQRTAGEFPEREDLSDGTDDDAGPVQPPPPAKPPAPTFRLKNDADLFGLGLEETRPKESSGEDKEGKAPSREKKKKKKKSGEEEEKAAKKKSKHKKSKDKAEDKGREERRRRRRPRGPERTAVEELEAFLGGGAPGGHARGGGDYEEL", "length": 598, "header": "tr|F1RVY4-1|A0A287A4C7_PIG Computationally mapped isoform of RAB, member RAS onco family like 6 OS=Sus scrofa OX=9823 GN=RABL6 PE=1 SV=3 CANONICAL=A0A287A4C7-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 996920, "end_pos": 986199, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006420.3", "url": "https://www.ensembl.org/id/ENSSSCT00000006420.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006251.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006251.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCX6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCX6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4C7", "url": "https://www.uniprot.org/uniprotkb/A0A287A4C7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4C7", "url": "https://www.uniprot.org/uniprotkb/A0A287A4C7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4C7", "url": "https://www.uniprot.org/uniprotkb/A0A287A4C7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A4F1-1", "uniprot_ac": "A0A287A4F1", "uniprot_id": "A0A287A4F1_PIG", "mass": { "chemical_mass": 58770.0, "monoisotopic_mass": 58770.0 }, "refseq": {}, "gene_names": [ { "name": "HYCC2", "type": "recommended", "evidence": [ { "id": "A0A287A4F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F1" } ] } ], "protein_names": [ { "name": "Hyccin PI4KA lipid kinase complex subunit 2", "type": "synonym", "evidence": [ { "id": "A0A287A4F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A4F1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HYCC2", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F1", "locus": { "chromosome": "15", "start_pos": 104665729, "end_pos": 104747567, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036339", "url": "https://www.ensembl.org/id/ENSSSCG00000036339" } ] } } ], "crossref": [ { "id": "IPR018619", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018619", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "SIYHEXF", "url": "https://omabrowser.org/oma/group/SIYHEXF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31220", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31220", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31220:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31220:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09790", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09790", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A4F1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0PAE7", "url": "https://www.uniprot.org/uniprotkb/A0A8D0PAE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0PAE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0PAE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0PB18", "url": "https://www.uniprot.org/uniprotkb/A0A8D0PB18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0PB18-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0PB18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLGSERAVVEEWLSEFKALPDTQITNYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQLFELYRSSEVRLKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNNKVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEVLSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQHEKHWKELCGRIVLDPEFMVQLLTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSSQEGQKVLKVEVTPTVPRISRTAITTASIRRHRWRREGAEGINGGEELVNLNDADEGFSSGASLSSQPVGTKPSSSSQRGSLRKVATGRSAKDKETTSAVKSTESPRDSVVRRQYVQQPTDLSVDSIELTPMKKHLSLPAGQVVPKTNSLSLIRTASASSSKSFDYVNGSQASTSIGVGTEGVTNLAANNANRYSTISLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQLISQV", "length": 530, "header": "tr|A0A287A4F1-1|A0A287A4F1_PIG Isoform 1 of Hyccin PI4KA lipid kinase complex subunit 2 OS=Sus scrofa OX=9823 GN=HYCC2 PE=1 SV=1 CANONICAL=A0A287A4F1-1" }, "isoforms": [ { "isoform_ac": "A0A287A4F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F1/entry#A0A287A4F1-1", "sequence": { "sequence": "MLGSERAVVEEWLSEFKALPDTQITNYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQLFELYRSSEVRLKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNNKVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEVLSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQHEKHWKELCGRIVLDPEFMVQLLTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSSQEGQKVLKVEVTPTVPRISRTAITTASIRRHRWRREGAEGINGGEELVNLNDADEGFSSGASLSSQPVGTKPSSSSQRGSLRKVATGRSAKDKETTSAVKSTESPRDSVVRRQYVQQPTDLSVDSIELTPMKKHLSLPAGQVVPKTNSLSLIRTASASSSKSFDYVNGSQASTSIGVGTEGVTNLAANNANRYSTISLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQLISQV", "length": 530, "header": "tr|A0A287A4F1-1|A0A287A4F1_PIG Isoform 1 of Hyccin PI4KA lipid kinase complex subunit 2 OS=Sus scrofa OX=9823 GN=HYCC2 PE=1 SV=1 CANONICAL=A0A287A4F1-1" }, "locus": { "chromosome": "15", "start_pos": 104716390, "end_pos": 104673185, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105540.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105540.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076160.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076160.1" } ] } }, { "isoform_ac": "A0A8D0PAE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F1/entry#A0A8D0PAE7-1", "sequence": { "sequence": "MLGSERAVVEEWLSEFKALPDTQITNYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQLFELYRSSEVRLKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNNKVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEVLSFLMLCYNSAIVYMPASSYQSLCRMGSRYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSSQEGQKVLKVEVTPTVPRISRTAITTASIRRHRWRREGAEGINGGEELVNLNDADEGFSSGASLSSQPVGTKPSSSSQRGSLRKVATGRSAKDKETTSAVKSTESPRDSVVRRQYVQQPTDLSVDSIELTPMKKHLSLPAGQVVPKTNSLSLIRTASASSSKSFDYVNGSQASTSIGVGTEGVTNLAANNANRYSTISLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQLISQV", "length": 491, "header": "tr|A0A8D0PAE7-1|A0A287A4F1_PIG Computationally mapped isoform of Hyccin PI4KA lipid kinase complex subunit 2 OS=Sus scrofa OX=9823 GN=HYCC2 PE=1 SV=1 CANONICAL=A0A287A4F1-1" }, "locus": { "chromosome": "15", "start_pos": 104716390, "end_pos": 104673185, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048280.1", "url": "https://www.ensembl.org/id/ENSSSCT00000048280.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043437.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043437.1" } ] } }, { "isoform_ac": "A0A8D0PB18-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F1/entry#A0A8D0PB18-1", "sequence": { "sequence": "MLGSERAVVEEWLSEFKALPDTQITNYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQLFELYRSSEVRLKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEVLSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQHEKHWKELCGRIVLDPEFMVQLLTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSSQEGQKVLKVEVTPTVPRISRTAITTASIRRHRWRREGAEGINGGEELVNLNDADEGFSSGASLSSQPVGTKPSSSSQRGSLRKVATGRSAKDKETTSAVKSTESPRDSVVRRQYVQQPTDLSVDSIELTPMKKHLSLPAGQVVPKTNSLSLIRTASASSSKSFDYVNGSQASTSIGVGTEGVTNLAANNANRYSTISLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQLISQV", "length": 503, "header": "tr|A0A8D0PB18-1|A0A287A4F1_PIG Computationally mapped isoform of Hyccin PI4KA lipid kinase complex subunit 2 OS=Sus scrofa OX=9823 GN=HYCC2 PE=1 SV=1 CANONICAL=A0A287A4F1-1" }, "locus": { "chromosome": "15", "start_pos": 104716390, "end_pos": 104673185, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050098.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050098.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051132.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051132.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0PAE7", "url": "https://www.uniprot.org/uniprotkb/A0A8D0PAE7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZT89-1", "protein_name": "Hyccin PI4KA lipid kinase complex subunit 2", "gene_name": "Hycc2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"MLGSERAVVEEWLSEFKALPDTQITSYAATLHRKKALVPALYKVIQDSNNELLEPVCHQLFELYRSSEVRLKRFTLQFLPELIWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNNKVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEVLSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQHEKQWKELCGRIVLDPEFMVQLLTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSSQEGQKVLKVEVTPTVPRISRTAITTASIRRHRWRREGAEGLNGGEESLNMNDADEGFSSGASLSSQPHGTKPPSSSQRGSLRKVATGRSAKDKETALAIKSNESPRDSVVGKQFVQQQADLSIDSVELTPMKKHLSLPAGQVVPKTNSLSLIRTASASSSKSFDYVNGGQASTSIGVGTEGVTNLAATNANRYSTISLQEDRLGHAGEGKELLSPGAPLTKQSRSPSFNMQLISQV", "length": 530 }, "evidence": [ { "id": "A0A287A4F1", "url": "https://omabrowser.org/oma/group/A0A287A4F1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IXS8-1", "protein_name": "Hyccin 2", "gene_name": "HYCC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLGTDRCVVEEWLSEFKALPDTQITSYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQLFELYRSSEVRLKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNNKVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEVLSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQHEKHWKELCGRIVLDPEFMVQLLTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSTQEGQKVLKVEVTPTVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSVELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNGSQASTSIGVGTEGGTNLAANNANRYSTVSLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQLISQV", "length": 530 }, "evidence": [ { "id": "A0A287A4F1", "url": "https://omabrowser.org/oma/group/A0A287A4F1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4F1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4F1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F1" } ], "pmid": "" }, { "name": "cell junction", "id": "GO:0030054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030054", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4F1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein localization to plasma membrane", "id": "GO:0072659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072659", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4F1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F1" } ], "pmid": "" }, { "name": "phosphatidylinositol phosphate biosynthetic process", "id": "GO:0046854", "url": 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"authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A4F4-1", "uniprot_ac": "A0A287A4F4", "uniprot_id": "A0A287A4F4_PIG", "mass": { "chemical_mass": 28174.0, "monoisotopic_mass": 28174.0 }, "refseq": {}, "gene_names": [ { "name": "RIMOC1", "type": "recommended", "evidence": [ { "id": "A0A287A4F4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F4" } ] } ], "protein_names": [ { "name": "RAB7A interacting MON1-CCZ1 complex subunit 1", "type": "synonym", "evidence": [ { "id": "A0A287A4F4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A4F4", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RIMOC1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F4", "locus": { "chromosome": "16", "start_pos": 26701443, "end_pos": 26681716, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040855", "url": "https://www.ensembl.org/id/ENSSSCG00000040855" } ] } } ], "crossref": [ { "id": "ENSSSCG00000040855", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040855", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR037657", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037657", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR28494", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28494", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28494:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28494:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17716", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17716", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A4F4", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAGSSVVRRVEELGDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEDKECSNPSNLLELYTQAILDMTYFEENKLVDEDFPEDSSEKVKELISFLSEPEILVKENNMHPKYLIDGISYLIQMLNFRCPIQLNEGVSFQDLDTAKLLSEGIFSDIHLLAMMYSGEMCYWGLKHCADQQPENHEVDTGVSGASYAAYKEPLDFREVGEKILKKYVSVCEGPLKEQEWNTTNAKQILNFFQHHTN", "length": 249, "header": "tr|A0A287A4F4-1|A0A287A4F4_PIG Isoform 1 of RAB7A interacting MON1-CCZ1 complex subunit 1 OS=Sus scrofa OX=9823 GN=RIMOC1 PE=1 SV=1 CANONICAL=A0A287A4F4-1" }, "isoforms": [ { "isoform_ac": "A0A287A4F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4F4/entry#A0A287A4F4-1", "sequence": { 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"database": "UniProtKB", "id": "A0A287A4G3", "url": "https://www.uniprot.org/uniprotkb/A0A287A4G3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6794361", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6794361", "resource": "Reactome", "description": "Neurexins and neuroligins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "gephyrin clustering involved in postsynaptic density assembly", "id": "GO:0097116", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097116", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4G3", "url": "https://www.uniprot.org/uniprotkb/A0A287A4G3" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4G3", "url": 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A4H7-1", "uniprot_ac": "A0A287A4H7", "uniprot_id": "A0A287A4H7_PIG", "mass": { "chemical_mass": 74888.0, "monoisotopic_mass": 74888.0 }, "refseq": {}, "gene_names": [ { "name": "RMC1", "type": "recommended", "evidence": [ { "id": "A0A287A4H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7" } ] } ], "protein_names": [ { "name": "Regulator of MON1-CCZ1", "type": "synonym", "evidence": [ { "id": "A0A287A4H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A4H7", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RMC1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7", "locus": { "chromosome": "6", "start_pos": 108403169, "end_pos": 108376777, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026851", "url": "https://www.ensembl.org/id/ENSSSCG00000026851" } ] } } ], "crossref": [ { "id": "ENSSSCG00000026851", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026851", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR009755", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009755", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040371", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040371", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049040", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049040", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VWVHNRE", "url": "https://omabrowser.org/oma/group/VWVHNRE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A4H7", "url": "https://www.orthodb.org/?gene=A0A287A4H7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12897", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12897", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12897:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12897:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07035", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07035", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21029", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21029", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A4H7", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4H7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSE7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2Q5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2Q5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2Q5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2Q5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LBG5", "url": "https://www.uniprot.org/uniprotkb/I3LBG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LBG5-1", "url": "https://www.uniprot.org/uniprotkb/I3LBG5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEENYYLELCERPVHFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGPDDRNPISFRMEDKGEVKCIKFSLENKILAVQRTSKTVDFSNFIPDSSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVLPEKRSLKLLKSQNINVNWYMYCPESAVILLSTTVLGNVLQPFYFRAGTMSKLPKFEIELPAAPKSTKLNLSERDIAMATIYGQLYVLFLRHHSRTSNSTGAEVVLYHLPREGACKKLHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIKLRGEFDGTVTLHHPVLPARSIQPYQIPAAGPAPVTSQSPVPCKLYSSSWIVFQPDIIISASQGYLWNLQVKLQPIVNLLPDKGRLMDFLLQRRDCKMVILSVCAQMLTESDRATLPVIATVFDKLNQEYKKYLDAEQSYTMAMEAGQSRSSPLLRRPVRTQAVVDQSDMYTHVLSAFTEKKETPHKFVVAVLMEYIRSLNQFQITVQHYLHELVIKTLVQHNLFYTLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAAKQTEDHMLFYTIFRFFEQRNQRLRGNPGFTPGEHCEEHVAFFKQVFGDQALMRPATF", "length": 657, "header": "tr|A0A287A4H7-1|A0A287A4H7_PIG Isoform 1 of Regulator of MON1-CCZ1 OS=Sus scrofa OX=9823 GN=RMC1 PE=4 SV=1 CANONICAL=A0A287A4H7-1" }, "isoforms": [ { "isoform_ac": "A0A287A4H7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7/entry#A0A287A4H7-1", "sequence": { "sequence": "MGEENYYLELCERPVHFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGPDDRNPISFRMEDKGEVKCIKFSLENKILAVQRTSKTVDFSNFIPDSSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVLPEKRSLKLLKSQNINVNWYMYCPESAVILLSTTVLGNVLQPFYFRAGTMSKLPKFEIELPAAPKSTKLNLSERDIAMATIYGQLYVLFLRHHSRTSNSTGAEVVLYHLPREGACKKLHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIKLRGEFDGTVTLHHPVLPARSIQPYQIPAAGPAPVTSQSPVPCKLYSSSWIVFQPDIIISASQGYLWNLQVKLQPIVNLLPDKGRLMDFLLQRRDCKMVILSVCAQMLTESDRATLPVIATVFDKLNQEYKKYLDAEQSYTMAMEAGQSRSSPLLRRPVRTQAVVDQSDMYTHVLSAFTEKKETPHKFVVAVLMEYIRSLNQFQITVQHYLHELVIKTLVQHNLFYTLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAAKQTEDHMLFYTIFRFFEQRNQRLRGNPGFTPGEHCEEHVAFFKQVFGDQALMRPATF", "length": 657, "header": "tr|A0A287A4H7-1|A0A287A4H7_PIG Isoform 1 of Regulator of MON1-CCZ1 OS=Sus scrofa OX=9823 GN=RMC1 PE=4 SV=1 CANONICAL=A0A287A4H7-1" }, "locus": { "chromosome": "6", "start_pos": 108403084, "end_pos": 108376934, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062089.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062089.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038679.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038679.1" } ] } }, { "isoform_ac": "A0A5G2QSE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7/entry#A0A5G2QSE7-1", "sequence": { "sequence": "MGEENYYLELCERPVHFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGPDDRNPISFRMEDKGEVKCIKFSLENKILAVQRTSKTVDFSNFIPDSSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVLPEKRSLKLLKSQNINVNWYMYCPESAVILLSTTVLGNVLQPFYFRAGTMSKLPKFEIELPAAPKSTKLNLSERDIAMATIYGQLYVLFLRHHSRTSNSTGAEVVLYHLPREGACKKLHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIKLRGEFDGTVTLHHPVLPARSIQPYQIPAAGPAPVTSQSPVPCKLYSSSWIVFQPDIIISASQVLTESDRATLPVIATVFDKLNQEYKKYLDAEQSYTMAMEAGQSRSSPLLRRPVRTQAVVDQSDMYTHVLSAFTEKKETPHKFVVAVLMEYIRSLNQFQITVQHYLHELVIKTLVQHNLFYTLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAAKQTEDHMLFYTIFRFFEQRNQRLRGNPGFTPGEHCEEHVAFFKQVFGDQALMRPATF", "length": 614, "header": "tr|A0A5G2QSE7-1|A0A287A4H7_PIG Computationally mapped isoform of Regulator of MON1-CCZ1 OS=Sus scrofa OX=9823 GN=RMC1 PE=4 SV=1 CANONICAL=A0A287A4H7-1" }, "locus": { "chromosome": "6", "start_pos": 108403084, "end_pos": 108376934, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084737.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084737.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067850.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067850.1" } ] } }, { "isoform_ac": "A0A5G2R2Q5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7/entry#A0A5G2R2Q5-1", "sequence": { "sequence": "MGEENYYLELCERPVHFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGPDDRNPISFRMEDKGEVKCIKFSLENKILAVQRTSKTVVLPEKRSLKLLKSQNINVNWYMYCPESAVILLSTTVLGNVLQPFYFRAGTMSKLPKFEIELPAAPKSTKLNLSERDIAMATIYGQLYVLFLRHHSRTSNSTGAEVVLYHLPREGACKKLHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIKLRGEFDGTVTLHHPVLPARSIQPYQIPAAGPAPVTSQSPVPCKLYSSSWIVFQPDIIISASQGYLWNLQVKLQPIVNLLPDKGRLMDFLLQRRDCKMVILSVCAQMLTESDRATLPVIATVFDKLNQEYKKYLDAEQSYTMAMEAGQSRSSPLLRRPVRTQAVVDQSDMYTHVLSAFTEKKETPHKFVVAVLMEYIRSLNQFQITVQHYLHELVIKTLVQHNLFYTLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAAKQTEDHMLFYTIFRFFEQRNQRLRGNPGFTPGEHCEEHVAFFKQVFGDQALMRPATF", "length": 609, "header": "tr|A0A5G2R2Q5-1|A0A287A4H7_PIG Computationally mapped isoform of Regulator of MON1-CCZ1 OS=Sus scrofa OX=9823 GN=RMC1 PE=4 SV=1 CANONICAL=A0A287A4H7-1" }, "locus": { "chromosome": "6", "start_pos": 108403084, "end_pos": 108376934, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089728.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089728.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071472.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071472.1" } ] } }, { "isoform_ac": "I3LBG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7/entry#I3LBG5-1", "sequence": { "sequence": "MGEENYYLELCERPVHFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGPDDRNPISFRMEDKGEVKCIKFSLENKILAVQRTSKTVDFSNFIPDSSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVLPEKRSLKLLKSQNINVNWYMYCPESAVILLSTTVLGNVLQPFYFRAGTMSKLPKFEIELPAAPKSTKLNLSERDIAMATIYGQLYVLFLRHHSRTSNSTGAEVVLYHLPREGACKKLHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIKLRGEFDGTVTLHHPVLPARSIQPYQIPAAGPAPVTSQSPVPCKLYSSSWIVFQPDIIISASQGYLWNLQVKLQPIVNLLPDKGRLMDFLLQRRDCKMVILSVCAQMLTESDRATLPVIATVFDKLNQEYKKYLDAEQSYTMAMEAGQSRSSPLLRRPVRTQAVVDQSDMYTHVLSAFTEKKHYLHELVIKTLVQHNLFYTLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAAKQTEDHMLFYTIFRFFEQRNQRLRGNPGFTPGEHCEEHVAFFKQVFGDQALMRPATF", "length": 631, "header": "tr|I3LBG5-1|A0A287A4H7_PIG Computationally mapped isoform of Regulator of MON1-CCZ1 OS=Sus scrofa OX=9823 GN=RMC1 PE=4 SV=3 CANONICAL=A0A287A4H7-1" }, "locus": { "chromosome": "6", "start_pos": 108403084, "end_pos": 108376934, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027568.3", "url": "https://www.ensembl.org/id/ENSSSCT00000027568.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021385.3", "url": "https://www.ensembl.org/id/ENSSSCP00000021385.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E1BHW7-1", "protein_name": "Regulator of MON1-CCZ1", "gene_name": "RMC1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGEEDYYLELCERPVHFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGPDDRNPISFRMEDKGEVKCIKFSLENKILAVQRTSKTVDFSNFIPDSSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVLPEKRNLKLLKSQNINVNWYMYCPEGSVILLSTTVLGNVLQPFYFRAGTMSKLPKFEIELPAAPKSTKLSLSERDIAMATIYGQLYVLFLRHHSRTSNSAGAEVVLYHLPREGACKKMHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIRLRGEFDGSVTLHHPVLPARSIQPYQIPAAGPAPVTSQSPVPCKLYSSSWIVFQPDIIISASQGYLWNLQVKLQPIVNLLPDKGRLMDFLLQRKECKMVILSVCSQMLTESDRATLPVIATVFDKLNQEYKKYLDAEQNYTMAVEAGQSRSGPLLRRPVRTQAVVDQSDMYTHVLSVFTEKKETPHKFVIAVLMEYIRSLNQFQITVQHYLHELVIRTLVQHSLFSTLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAAKQTEDHMLFYTIFRFFEQRNQRLRGNPSFTPGEHCEEHVAFFKQVFGDQALMRPTTF", "length": 657 }, "evidence": [ { "id": "A0A287A4H7", "url": "https://omabrowser.org/oma/group/A0A287A4H7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F4J8L1-1", "protein_name": "C18orf8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNSSAQAGVGSGALSHVYIHHPSLRCNIPESNGLFYDDANRLLICTTSSQVFSWETSPFNPDVPPSVDSISEGPILSIRFSLDKKAIAVQRSDCEIQLFNRETKQILNHKCKAGSESILGFFWSDSPLCDLAIVKTSGMDLFACDSMLNSLRLVETKKANVNWYIYTHETRLVLLASGLQCKTFNGFQLSTAGVVRLPRFEMTMARSESNSKPILSAGDLHLVTVYGRIYCLQVDREAMLLHLYRFYRDAVVQQGSLPIYSSKLSVNVVDNLLLVHQIDAKVVIIYDLFVDSRAPVSAPLPLLWRGYQVSETSSQAVNKEIESSESSTSNENIVMYEDGWTFLVPDLILDQTNKVLWKIHLDLEAISASSSDRTSLLEFLQRRKLEANKAKQLCLGIARAIILERRPATQVTQAIDVLVTAYSYSVKAGTYKEIKNENATASTPTPGASPDSERHRQSGSNIDEEVEMNLSSGSQENMFCADEQQESQLSSPAISPDELYKFVFTSVEEMMVEESEYLVAIITEFLRSISAEKLKVDLNIYVMTIKLLAYSKRFAELSLFTTNKIIEPSKEVAFQLLDSGRQNIRVRKLGLDMLRQLSLHHDYISSLVQDGYYLEALRYAQKHKVTSVRSSMFLEAAFASNDMQHLAAILRVLSELIPGFKETSEYYTFYGLLNDTSSSVAV", "length": 682 }, "evidence": [ { "id": "A0A287A4H7", "url": "https://omabrowser.org/oma/group/A0A287A4H7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VC42-1", "protein_name": "Regulator of MON1-CCZ1 complex", "gene_name": "Rmc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGGEDYYLELCERPVQFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGPDDRNPISFRMDDRGEVKCIKFSLENKILAVQRTAKAVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVMPEKRSLKLLKSHNINVNWYTYCPESAVILLSTTVLENVLQPFHFRAGTMSKLPKFEIELPAAPKSTKLSLSERDIAMATIYGQLYILFLRHHSRTSNSTGAEVVLYHLPREGACKKMHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIRLRGEFDGTVTFHHPVLPARSIQPYEIPLAGPAAVTSQSPVPCKLYSSSWIVFQPDIIISASQGYLWNLQVKLQPIVNLLPDKGRLMDFLLQRKECKAVVLSVCSQMLSESDRATLPVIATVFDKLNHEYKKYLDADQSYTMAVEAGQSRSNPPLKRPVRTQAVVDQSDVYTQVLSPFVENKEMPHKFVIAVLMEYIRSLNQFQIPVQHYLHELVIKTLVQHNLFYMLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAARQTDDVMLFYTIFRFFEQRNQRLRGNPNFTPGEHCEEHVAFFKQVFGEQALMRPTTF", "length": 657 }, "evidence": [ { "id": "A0A287A4H7", "url": "https://omabrowser.org/oma/group/A0A287A4H7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96DM3-1", "protein_name": "Regulator of MON1-CCZ1 complex", "gene_name": "RMC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGEEDYYLELCERPVQFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGPDDRNPISFRMDDKGEVKCIKFSLENKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVLPEKRSLKLLKSHNLNVNWYMYCPESAVILLSTTVLENVLQPFHFRAGTMSKLPKFEIELPAAPKSTKPSLSERDIAMATIYGQLYVLFLRHHSRTSNSTGAEVVLYHLPREGACKKMHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIKLRGEFDGSVTFHHPVLPARSIQPYQIPITGPAAVTSQSPVPCKLYSSSWIVFQPDIIISASQGYLWNLQVKLEPIVNLLPDKGRLMDFLLQRKECKMVILSVCSQMLSESDRASLPVIATVFDKLNHEYKKYLDAEQSYAMAVEAGQSRSSPLLKRPVRTQAVLDQSDVYTHVLSAFVEKKEMPHKFVIAVLMEYIRSLNQFQIAVQHYLHELVIKTLVQHNLFYMLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAAKQTEDNMLFYTIFRFFEQRNQRLRGSPNFTPGEHCEEHVAFFKQIFGDQALMRPTTF", "length": 657 }, "evidence": [ { "id": "A0A287A4H7", "url": "https://omabrowser.org/oma/group/A0A287A4H7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VRX1-1", "protein_name": "Regulator of MON1-CCZ1 complex", "gene_name": "Bulli", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDNSNGIHYIELTPNPIRFDAVSQLTNVFFDDSNKQIFAVRSGGATGVVVKGPGSPDDVVISFCMSDRGGAIRSIKFSPDNQILAVQRKENSVEFICFQGDQPLLQDIITHQVKTLIHGFVWVHNREVALISNTGVEVYTVVPEKRQVRSVKSLSIGIKWFAWCCDANVALLCTSEGNSLIPVLVKQKVITKLPKVDLGNPSRDVQESKVTLGQVYGVLAVLILQSNSTTGLMEVEVHLLNGPGLAPRKCHVLRLSLLGRFAINTVDNLIVVHHQASGTSLLFDISLPGEVINEITYHTPITPGRSIKPFGLKLPSLSPDGQILQCELYSTHWVLFQPNIVIDAKLGCMWFLNLCIEPLCQLISDRIRLTEFLLQRSNGKQMLLKVIGQLVDDQYKGTLLPVLETIFSRINKIYASWVQLELQNQTAQPSNVKTTTLKQSTPPIVLIEQLDMVQIFQRIARRPYTESILMLYLQSLNKFNIAAQEELSKMIISELISNRSFDTLRRLVSYSMLLESKSVACFLLSHSNVDTAISQVAIDMLGRIEAHEIIIEVMLGQGKVIDALRLAKNSMGLEKVPARKFLEAAHKTKDDLIFHSVYRFFQMRNLKLYETLSFPKAEQCTEFIQHYNNTFPADNPTRQPVS", "length": 642 }, "evidence": [ { "id": "A0A287A4H7", "url": "https://omabrowser.org/oma/group/A0A287A4H7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of autophagy", "id": "GO:0010506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010506", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4H7", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "late endosome membrane", "id": "GO:0031902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031902", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4H7", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7" } ], "pmid": "" }, { "name": "Mon1-Ccz1 complex", "id": "GO:0035658", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035658", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4H7", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" }, { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 590, "end_pos": 592, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A4H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7" }, { "id": "PF07035", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07035" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mic1", "eco_id": "ECO_0000259", "start_pos": 383, "end_pos": 631, "start_aa": "Arg", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287A4H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H7" }, { "id": "PF21029", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21029" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Regulator of MON1-CCZ1 complex N-terminal", "eco_id": "ECO_0000259", "start_pos": 26, "end_pos": 144, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 207, "end_pos": 209 }, { "start_pos": 235, "end_pos": 237 }, { "start_pos": 261, "end_pos": 263 }, { "start_pos": 590, "end_pos": 592 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A4I2-1", "uniprot_ac": "A0A287A4I2", "uniprot_id": "A0A287A4I2_PIG", "mass": { "chemical_mass": 30154.0, "monoisotopic_mass": 30154.0 }, "refseq": {}, "gene_names": [ { "name": "RSPH1", "type": "recommended", "evidence": [ { "id": "A0A287A4I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4I2" } ] } ], "protein_names": [ { "name": "Radial spoke head 1 homolog", "type": "recommended", "evidence": [ { "id": "A0A287A4I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4I2/entry#names_and_taxonomy" } ] }, { "name": "Male meiotic metaphase chromosome-associated acidic protein", "type": "synonym", "evidence": [ { "id": "A0A287A4I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4I2/entry#names_and_taxonomy" } ] }, { "name": "Meichroacidin", "type": "synonym", "evidence": [ { "id": "A0A287A4I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4I2/entry#names_and_taxonomy" } ] }, { "name": "Testis-specific gene A2 protein", "type": "synonym", "evidence": [ { "id": "A0A287A4I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4I2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Functions as part of axonemal radial spoke complexes that play an important part in the motility of sperm and cilia.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4I2", "url": "https://www.uniprot.org/uniprotkb/A0A287A4I2#function" }, { "database": "UniProtKB", "id": "ARBA00056649", "url": "https://www.uniprot.org/uniprotkb/ARBA00056649#function" }, { "database": "UniProtKB", "id": "A0A287BHE0", "url": "https://www.uniprot.org/uniprotkb/A0A287BHE0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A4I2", "url": "https://www.uniprot.org/uniprotkb/A0A287A4I2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RSPH1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4I2", "locus": { "chromosome": "13", "start_pos": 205808671, "end_pos": 205827213, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040224", "url": "https://www.ensembl.org/id/ENSSSCG00000040224" } ] } } ], "crossref": [ { "id": "A0A287A4I2", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A4I2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040224", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040224", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110256495", "url": "https://www.ncbi.nlm.nih.gov/gene/110256495", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110256495", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256495", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IYEGAWF", "url": "https://omabrowser.org/oma/group/IYEGAWF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BHE0", "url": "https://www.orthodb.org/?gene=A0A287BHE0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43215", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43215", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43215:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43215:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02493", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02493", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A4I2", "url": "https://www.uniprot.org/uniprotkb/A0A287A4I2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4I2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4I2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHE0", "url": "https://www.uniprot.org/uniprotkb/A0A287BHE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHE0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDLGSEELEEERENDLGGTYKFKNGARYIGEYVKNKKHGQGTFIYPDGSRYEGEWANDLRHGHGVYYYVNNDTYTGEWLAHQRHGQGTYLYAETGSKYVGTWVKGQQEGAAELIHLNHRYLGKFLNKNPVGPGKYVFDIGCEQHGEYRLTDVERGEEEEEEEAQVTVVPRWKATKITELALWTPTLPEKQPPEDGASQEGTPGAGAGGEAAEEAQALADLSEGELDTTRPGEEEGDASRADRAESHEDNLEQGNVSFEEEDGRQSEMLD", "length": 270, "header": "tr|A0A287A4I2-1|A0A287A4I2_PIG Isoform 1 of Radial spoke head 1 homolog OS=Sus scrofa OX=9823 GN=RSPH1 PE=4 SV=2 CANONICAL=A0A287A4I2-1" }, "isoforms": [ { "isoform_ac": "A0A287A4I2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4I2/entry#A0A287A4I2-1", "sequence": { "sequence": "MSDLGSEELEEERENDLGGTYKFKNGARYIGEYVKNKKHGQGTFIYPDGSRYEGEWANDLRHGHGVYYYVNNDTYTGEWLAHQRHGQGTYLYAETGSKYVGTWVKGQQEGAAELIHLNHRYLGKFLNKNPVGPGKYVFDIGCEQHGEYRLTDVERGEEEEEEEAQVTVVPRWKATKITELALWTPTLPEKQPPEDGASQEGTPGAGAGGEAAEEAQALADLSEGELDTTRPGEEEGDASRADRAESHEDNLEQGNVSFEEEDGRQSEMLD", "length": 270, "header": "tr|A0A287A4I2-1|A0A287A4I2_PIG Isoform 1 of Radial spoke head 1 homolog OS=Sus scrofa OX=9823 GN=RSPH1 PE=4 SV=2 CANONICAL=A0A287A4I2-1" }, "locus": { "chromosome": "13", "start_pos": 205827014, "end_pos": 205809078, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047923.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047923.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038873.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038873.2" } ] } }, { "isoform_ac": "A0A287BHE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4I2/entry#A0A287BHE0-1", "sequence": { "sequence": "MSDLGSEELEEERENDLGEYEGERNELGERHGHGKARLPNGDTYEGKYEHGKRHGQGTYKFKNGARYIGEYVKNKKHGQGTFIYPDGSRYEGEWANDLRHGHGVYYYVNNDTYTGEWLAHQRHGQGTYLYAETGSKYVGTWVKGQQEGAAELIHLNHRYLGKFLNKNPVGPGKYVFDIGCEQHGEYRLTDVERGEEEEEEEAQVTVVPRWKATKITELALWTPTLPEKQPPEDGASQEGTPGAGAGGEAAEEAQALADLSEGELDTTRPGEEEGDASRADRAESHEDNLEQGNVSFEEEDGRQSEMLD", "length": 308, "header": "tr|A0A287BHE0-1|A0A287BHE0_PIG Computationally mapped isoform of Radial spoke head 1 homolog OS=Sus scrofa OX=9823 GN=RSPH1 PE=4 SV=1 CANONICAL=A0A287A4I2-1" }, "locus": { "chromosome": "13", "start_pos": 205827014, "end_pos": 205809078, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065774.2", "url": "https://www.ensembl.org/id/ENSSSCT00000065774.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040493.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040493.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 202, "start_aa": "Thr", "end_pos": 202, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr202", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4I2", "url": "https://www.uniprot.org/uniprotkb/A0A287A4I2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110256495", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256495", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7IEN7-1", "protein_name": "Radial spoke head 1 homolog", "gene_name": "Rsph1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": 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"MGSVGVGLVDCHCHLSAPDFDHDLDDVLEKAKKASVMALVVVAEHSGEFEKIMQLSERYNGFVLPCLGIHPVQGVSSEDQRSVTLKDLDIALPIIENYKDQLLAIGEVGLDFSPRIAGTDEQKEEQRQVLIRQVQLARRLNLPLNIHSRSAGRPTISLLREQGADKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPHNISIAAEYIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK", "length": 274, "header": "tr|A0A287A4L5-1|A0A287A4L5_PIG Isoform 1 of TatD DNase domain containing 3 OS=Sus scrofa OX=9823 GN=TATDN3 PE=3 SV=2 CANONICAL=A0A287A4L5-1" }, "isoforms": [ { "isoform_ac": "A0A287A4L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4L5/entry#A0A287A4L5-1", "sequence": { "sequence": "MGSVGVGLVDCHCHLSAPDFDHDLDDVLEKAKKASVMALVVVAEHSGEFEKIMQLSERYNGFVLPCLGIHPVQGVSSEDQRSVTLKDLDIALPIIENYKDQLLAIGEVGLDFSPRIAGTDEQKEEQRQVLIRQVQLARRLNLPLNIHSRSAGRPTISLLREQGADKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPHNISIAAEYIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK", "length": 274, "header": "tr|A0A287A4L5-1|A0A287A4L5_PIG Isoform 1 of TatD DNase domain containing 3 OS=Sus scrofa OX=9823 GN=TATDN3 PE=3 SV=2 CANONICAL=A0A287A4L5-1" }, "locus": { "chromosome": "9", "start_pos": 130622214, "end_pos": 130608277, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062542.2", "url": "https://www.ensembl.org/id/ENSSSCT00000062542.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038887.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038887.2" } ] } }, { "isoform_ac": "A0A287A4P8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4L5/entry#A0A287A4P8-1", "sequence": { "sequence": "MGSVGVGLVDCHCHLSAPDFDHDLDDVLEKAKKASVMALVVVAEHSGEFEKIMQLSERYNGFVLPCLGIHPVQGVSSEDQRSVTLKVGLDFSPRIAGTDEQKEEQRQVLIRQVQLARRLNLPLNIHSRSAGRPTISLLREQGADKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPHNISIAAEYIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK", "length": 253, "header": "tr|A0A287A4P8-1|A0A287A4P8_PIG Computationally mapped isoform of TatD DNase domain containing 3 OS=Sus scrofa OX=9823 GN=TATDN3 PE=3 SV=2 CANONICAL=A0A287A4L5-1" }, "locus": { "chromosome": "9", "start_pos": 130622214, "end_pos": 130608277, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065731.2", "url": "https://www.ensembl.org/id/ENSSSCT00000065731.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038754.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038754.2" } ] } }, { "isoform_ac": "A0A287BLP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4L5/entry#A0A287BLP0-1", "sequence": { "sequence": "MGSVGVGLVDCHCHLSAPDFDHDLDDVLEKAKKASVMALVVVAEHSGEFEKIMQLSERYNGFVLPCLGIHPVQGVSSEDQRSVTLKDLDIALPIIENYKDQLLAIGEVGLDFSPRIAGTDEQKEEQRQVLIRQVQLARRLNLPLNIHSRSAGRPTISLLREQAETCETVAFNFNLLRNRFTCTWTRKTGTE", "length": 191, "header": "tr|A0A287BLP0-1|A0A287BLP0_PIG Computationally mapped isoform of TatD DNase domain containing 3 OS=Sus scrofa OX=9823 GN=TATDN3 PE=3 SV=2 CANONICAL=A0A287A4L5-1" }, "locus": { "chromosome": "9", "start_pos": 130622214, "end_pos": 130608410, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049456.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049456.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057535.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057535.2" } ] } }, { "isoform_ac": "A0A4X1TKL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4L5/entry#A0A4X1TKL6-1", "sequence": { "sequence": "MGSVGVGLVDCHCHLSAPDFDHDLDDVLEKAKKASVMALVVVAEHSGEFEKIMQLSERIWI", "length": 61, "header": "tr|A0A4X1TKL6-1|A0A4X1TKL6_PIG Computationally mapped isoform of TatD DNase domain containing 3 OS=Sus scrofa OX=9823 GN=TATDN3 PE=3 SV=1 CANONICAL=A0A287A4L5-1" }, "locus": { "chromosome": "9", "start_pos": 130622214, "end_pos": 130616548, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072555.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072555.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066604.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066604.1" } ] } }, { "isoform_ac": "A0A8W4F7P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4L5/entry#A0A8W4F7P4-1", "sequence": { "sequence": "MGSVGVGLVDCHCHLSAPDFDHASVMALVVVAEHSGEFEKIMQLSERYNGFVLPCLGIHPVQGVSSEDQRSVTLKDLDIALPIIENYKDQLLAIGEVGLDFSPRIAGTDEQKEEQRQVLIRQVQLARRLNLPLNIHSRSAGRPTISLLREQGADKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQQKLVKQLPLTSICLETDSPALGPEKQVRNEPHNISIAAEYIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK", "length": 262, "header": "tr|A0A8W4F7P4-1|A0A287A4L5_PIG Computationally mapped isoform of TatD DNase domain containing 3 OS=Sus scrofa OX=9823 GN=TATDN3 PE=3 SV=1 CANONICAL=A0A287A4L5-1" }, "locus": { "chromosome": "9", "start_pos": 130622214, "end_pos": 130608277, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101444.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101444.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075264.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075264.1" } ] } }, { "isoform_ac": "A0A8W4F8I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4L5/entry#A0A8W4F8I6-1", "sequence": { "sequence": "MGSVGVGLVDCHCHLSAPDFDHDLDDVLEKAKKASVMALVVVAEHSGEFEKIMQLSERYNGFVLPCLGIHPVQGVSSEDQRSVTLKDLDIALPIIENYKDQLLAIGEVGLDFSPRIAGTDEQKEEQRQVLIRQVQLARRLNLPLNIHSRSAGRPTISLLREQGADKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQVRNEPHNISIAAEYIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK", "length": 247, "header": "tr|A0A8W4F8I6-1|A0A287A4L5_PIG Computationally mapped isoform of TatD DNase domain containing 3 OS=Sus scrofa OX=9823 GN=TATDN3 PE=3 SV=1 CANONICAL=A0A287A4L5-1" }, "locus": { "chromosome": "9", "start_pos": 130622214, "end_pos": 130608277, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097748.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097748.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075581.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075581.1" } ] } }, { "isoform_ac": "F1S2W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4L5/entry#F1S2W4-1", "sequence": { "sequence": "MGSVGVGLVDCHCHLSAPDFDHDLDDVLEKAKKASVMALVVVAEHSGEFEKIMQLSERYNGFVLPCLGIHPVQGVSSEDQRSVTLKDLDIALPIIENYKDQLLAIGEVGLDFSPRIAGTDEQKEEQRQVLIRQVQLARRLNLPLNIHSRSAGRPTISLLREQGADKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQYLSLFSKKQKLVKQLPLTSICLETDSPALGPEKQVRNEPHNISIAAEYIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK", "length": 281, "header": "tr|F1S2W4-1|A0A287A4L5_PIG Computationally mapped isoform of TatD DNase domain containing 3 OS=Sus scrofa OX=9823 GN=TATDN3 PE=3 SV=3 CANONICAL=A0A287A4L5-1" }, "locus": { "chromosome": "9", "start_pos": 130622214, "end_pos": 130608277, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016985.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016985.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016531.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016531.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F7P4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7P4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523687", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523687", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M2B4Y9-1", "protein_name": "TatD DNase domain containing 3-like isoform X1", "gene_name": "LOC571912", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MQGYIDCHCHISAEDFDSDIDDVVAESRKAGLVALLAVAEHAGEFEKIIQLSQRFPGFIMPCLGVHPVQDPAQPRGAVPEDLDAALPLIDKYKEHIVAIGEVGLDFTPRVVNSDAGKDGQRKVLIRQAEIAKQLNLPLNVHSRSAGRPTIHLLKEMGVENALLHAFDGKPSVALEGVKAGYFFSIPPSIVRSDQKQKLVKQVPLESMCLETDSPALGPEKQVRNVPRNISISAEYIAKIKGVSLEKVIEVTTQNALHLFPKLKTFIKA", "length": 268 }, "evidence": [ { "id": "A0A287A4L5", "url": "https://omabrowser.org/oma/group/A0A287A4L5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1A4M4-1", "protein_name": "Putative deoxyribonuclease TATDN3", "gene_name": "TATDN3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGAVGVGLVDCHCHLSAPDFDHDLDDVLKKAKEANVMALVVVAEHSGEFEKIMQLSQRYNGFVLPCLGVHPVQGVSPEDQRSVTLKDLDVALPIIENYKDQLLAIGEVGLDFSPRFAGTDEQKEEQRQVLIRQVQLAKRLNLPLNVHSRSAGRPTISLLNEQGADKVLLHAFDGRPSVAMEGVKAGYFFSIPPSIIRSGQQKLVKQLPLTSICLETDSPALGPEKQVRNEPRNISISAEYIAQVKGVSVEEVIEVTTQNALKLFPKLQRLLPK", "length": 273 }, "evidence": [ { "id": "A0A287A4L5", "url": "https://omabrowser.org/oma/group/A0A287A4L5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "M0R5U3-1", "protein_name": "TatD DNase domain containing 3", "gene_name": "Tatdn3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPSLELSCTGPTGNLIDCSRKVPPRLPRPQSSALVPVEKPSGVAMGLGLVDCHCHLSAPDFDSDLDDVLEKARKANVMALVAVAEHAGEFEKIMQLSERYNGFILPCLGVHPVQELSPEKTRSVTLKDLDVALPIVENYKDRLLAIGEVGLDFSPRYAGTHEEKEEQRQVLIRQVQLAKRLNVPLNVHSRSAGRPTISLLREQGAEKVLLHAFDGRPSVAMEGVRAGYYFSIPPSIVRSGQKQKLVKQLPLSSLCLETDSPALGPEKLTRNEPCNISIAAEFIAQVKGISVEEVREVTTQNAFKLFPKLQYLLQK", "length": 316 }, "evidence": [ { "id": "A0A287A4L5", "url": "https://omabrowser.org/oma/group/A0A287A4L5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q17R31-1", "protein_name": "Deoxyribonuclease TATDN3", "gene_name": "TATDN3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRAAGVGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCLGVHPVQGLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAEYIAQVKGISVEEVIEVTTQNALKLFPKLRHLLQK", "length": 274 }, "evidence": [ { "id": "A0A287A4L5", "url": "https://omabrowser.org/oma/group/A0A287A4L5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3U1C6-1", "protein_name": "Putative deoxyribonuclease TATDN3", "gene_name": "Tatdn3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLGLVDCHCHLSASDFDNDLDDVLEKARKANVMALVAVAEHAGEFERIMQLSERYNGFVLPCLGVHPVQELSPEKPRSVTLKDLDVALPIIEKYKDRLLAIGEVGLDFTPRYAGTDEEKEEQRQVLIRQVQLAKRLNVPLNVHSRSAGRPTISLLREQGAEQVLLHAFDGRPSVAMEGVRAGYYFSIPPSIVRSGQKQKLVKQLPLSSICLETDSPALGPEKLTRNEPCNISIAAEFIAQVKGISVEEVREVTTRNAFRLFPKLQSLLQKELQSHPLQAKSAQGSAGESKGLL", "length": 294 }, "evidence": [ { "id": "A0A287A4L5", "url": "https://omabrowser.org/oma/group/A0A287A4L5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "hydrolase activity, acting on ester bonds", "id": "GO:0016788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016788", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4L5", "url": "https://www.uniprot.org/uniprotkb/A0A287A4L5" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4L5", "url": "https://www.uniprot.org/uniprotkb/A0A287A4L5" } ], "pmid": "" }, { "name": "single-stranded DNA 3'-5' DNA exonuclease activity", "id": "GO:0008310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008310", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4L5", "url": "https://www.uniprot.org/uniprotkb/A0A287A4L5" } ], "pmid": "" }, { "name": "DNA-(apurinic or apyrimidinic site) endonuclease activity", "id": "GO:0003906", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003906", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4L5", "url": "https://www.uniprot.org/uniprotkb/A0A287A4L5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A287A4L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4L5#function" }, { "id": "A0A287A4L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4L5" }, { "id": "PIRSR005902-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR005902-1" }, { "id": "A0A8W4F8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8I6#function" }, { "id": "A0A8W4F8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8I6" }, { "id": "F1S2W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S2W4#function" }, { "id": "F1S2W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S2W4" } ], "binding_site_uniprot": 107, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_60240", "ligand": "divalent metal cation", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 107, "end_pos": 107, 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF00617", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00618", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00618", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5673001", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001926482", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926482", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A4M5", "url": "https://www.uniprot.org/uniprotkb/A0A287A4M5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4M5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4M5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN45", "url": "https://www.uniprot.org/uniprotkb/A0A287BN45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN45-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN45-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFLEPQETMPQTSVVFASILGPSCSGQGQPGMGERGGGAGGSGDLIFQEGRLISGSLEALMEHLVPTVDYYPDRTYIFTFLLSSRVFIPPHDLLARVGQICLEQRQQLEAGSEKAKLKSFSAKIVQLLKEWTEAFPYDFQDEKAMAELKAITHRVTQCDEENGTVKKAISQMTQSLLLSLAARSQLQELREKLRSPAMDKGPVLKAKPPAAQKDILGVCCDPLVLAQQLTHIELERVSSIHPEDLMQIVSHMDSRDKHRCRGDLTKTYSLEAYDNWFNCLSMLVATEVCRVVKKKHRTRMLEFFIDVARECFNIGNFNSMMAIISGMNLSPVARLKKTWSKVKTAKFDVLEHHMDPSSNFCNYRTALQGATQRSQMANSSREKIVIPVFNLFVKDIYFLHKIHTNHLPNGHINFKKFWEISRQIHEFMTWTQVECPFEKDKKIQSYLLTAPIYSEEALFIASFESEGPENHMEKDSWKTLRTTLLNRA", "length": 488, "header": "tr|A0A287A4M5-1|A0A287A4M5_PIG Isoform 1 of RasGEF domain family member 1A OS=Sus scrofa OX=9823 GN=RASGEF1A PE=4 SV=2 CANONICAL=A0A287A4M5-1" }, "isoforms": [ { "isoform_ac": "A0A287A4M5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4M5/entry#A0A287A4M5-1", "sequence": { "sequence": "MFLEPQETMPQTSVVFASILGPSCSGQGQPGMGERGGGAGGSGDLIFQEGRLISGSLEALMEHLVPTVDYYPDRTYIFTFLLSSRVFIPPHDLLARVGQICLEQRQQLEAGSEKAKLKSFSAKIVQLLKEWTEAFPYDFQDEKAMAELKAITHRVTQCDEENGTVKKAISQMTQSLLLSLAARSQLQELREKLRSPAMDKGPVLKAKPPAAQKDILGVCCDPLVLAQQLTHIELERVSSIHPEDLMQIVSHMDSRDKHRCRGDLTKTYSLEAYDNWFNCLSMLVATEVCRVVKKKHRTRMLEFFIDVARECFNIGNFNSMMAIISGMNLSPVARLKKTWSKVKTAKFDVLEHHMDPSSNFCNYRTALQGATQRSQMANSSREKIVIPVFNLFVKDIYFLHKIHTNHLPNGHINFKKFWEISRQIHEFMTWTQVECPFEKDKKIQSYLLTAPIYSEEALFIASFESEGPENHMEKDSWKTLRTTLLNRA", "length": 488, "header": "tr|A0A287A4M5-1|A0A287A4M5_PIG Isoform 1 of RasGEF domain family member 1A OS=Sus scrofa OX=9823 GN=RASGEF1A PE=4 SV=2 CANONICAL=A0A287A4M5-1" }, "locus": { "chromosome": "14", "start_pos": 61457043, "end_pos": 61426567, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061779.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061779.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038897.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038897.3" } ] } }, { "isoform_ac": "A0A287BN45-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4M5/entry#A0A287BN45-1", "sequence": { "sequence": "MPQTSVVFASILGPSCSGQGQPGMGERGGGAGGSGDLIFQEGRLISGSLEALMEHLVPTVDYYPDRTYIFTFLLSSRVFIPPHDLLARVGQICLEQRQQLEAGSEKAKLKSFSAKIVQLLKEWTEAFPYDFQDEKAMAELKAITHRVTQCDEENGTVKKAISQMTQSLLLSLAARSQLQELREKLRSPAMDKGPVLKAKPPAAQKDILGVCCDPLVLAQQLTHIELERVSSIHPEDLMQIVSHMDSRDKHRCRGDLTKTYSLEAYDNWFNCLSMLVATEVCRVVKKKHRTRMLEFFIDVARECFNIGNFNSMMAIISGMNLSPVARLKKTWSKVKTAKFDVLEHHMDPSSNFCNYRTALQGATQRSQMANSSREKIVIPVFNLFVKDIYFLHKIHTNHLPNGHINFKKFWEISRQIHEFMTWTQVECPFEKDKKIQSYLLTAPIYSEEALFIASFESEGPENHMEKDSWKTLRTTLLNRA", "length": 480, "header": "tr|A0A287BN45-1|A0A287BN45_PIG Computationally mapped isoform of RasGEF domain family member 1A OS=Sus scrofa OX=9823 GN=RASGEF1A PE=4 SV=2 CANONICAL=A0A287A4M5-1" }, "locus": { "chromosome": "14", "start_pos": 61436817, "end_pos": 61426567, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038817.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038817.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057860.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057860.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4M5", "url": "https://www.uniprot.org/uniprotkb/A0A287A4M5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156683", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156683", "resource": "KEGG Pathway" }, { "id": "R-SSC-5673001", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "resource": "Reactome", "description": "RAF/MAP kinase cascade" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0N4SVF2-1", "protein_name": "RasGEF domain family, member 1A", "gene_name": "Rasgef1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFLEPQEAMPQTSVVFSSILGPNCNRQVQPGMGERGGGASSGSKDLIFQDGRLTSGSLEALMEHLVPTVDYYPDRTYIFTFLLSSRVFMPPHDLLARVGQICLEQRQQLEAGPEKAKLKSFSTKIVQLLKEWTEAFPYDFQDEKVMAELKAIAHRVTQCDEENGTVKKAIAQMIQSLLLSLAARSQLQELREKLRSPVVDKGPVLKAKPPAAQKDILGVCSDPLVLAQQLTHIELERVNSIRPEDLMQIISHMDSLDNHRCRGDMTKTFSLEAYDNWFNCLSMLVATEVCRVVKKKHRTRMLEFFIDVARECFNIGNFNSMMAIISGMNLSPVARLKKTWSKVKTAKFDVLEHHMDPSSNFCNYRTALQGATQRSQTANSSREKIVIPVFNLFVKDIYFLHKIHTNHLPNGHINFKKFWEISRQIHEFMTWTQVECPFEKDKKIQSYVLTAPIYSEEALFIASFESEGPENHMEKDSWKALRTTLLNRA", "length": 489 }, "evidence": [ { "id": "A0A287A4M5", "url": "https://omabrowser.org/oma/group/A0A287A4M5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3Q3ADN1-1", "protein_name": "RasGEF domain family member 1A", "gene_name": "RASGEF1A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAEPLCNAAVKKCKETMPQTPIFSSMLGSSCSGQVQPDMGERCVDPVYQDGNIVSGSLEALIERLVPTMDYYPDRTYIFTFLLSSRVFIHPHELLAKVGQMCIKQKQQLEAGTEAEKAKLKSFAAKIIQLLKEWTETFPYDFQDEKSMKELKEIAHRITQCDEENGTVKKIISQMTQNLLMALSARSQYQEIKEKFRQPATDKGTILKTKPQSTQKDILSVCCDPLILAQQLTHIELERVSNIYPEDLMQIVSHMDSLDNHKCRGDVTKTYNLEAYDNWFNCLSMLVATEICRVVKKKQRTRMVEFFIDVARECFNIGNFNSMMAIISGMNLSPVARLKKTWSKVKTAKFDVLEHHMDPSSNFCNYRTALQGAAQRSQTANSNREKIVIPVFNLFIKDIYFLHKIHTNRLPNGQINFKKFWEISRQIHDFLTWKQVECPFEKDKKIQSYLLTAPIYSEEALFIASFESEGPENHMEKDSWKTLRTTLLNRA", "length": 491 }, "evidence": [ { "id": "A0A287A4M5", "url": "https://omabrowser.org/oma/group/A0A287A4M5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZZV7-1", "protein_name": "RasGEF domain family, member 1A", "gene_name": "Rasgef1a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPQTSVVFSGTLGPNCNRPVQPGMGERGGGASSGSKDLIFQDGRLTSGSLEALMEHLVPTVDYYPDRTYIFTFLLSSRVFMPPHDLLARVGQICLEQRQQLEAGPEKAKLKSFSTKIVQLLKEWTEAFPYDFQDEKAMAELKAIAHRVTQCDEENGTVKKAITQMIQSLLLSLAARSQLQELREKLRSPVVDKGPVLKAKPPAAQKDILGVCSDPLVLAQQLTHIELERVNSIRPEDLMQIISHMDSLDNHRVVKKKHRTRMLEFFIDVARECFNIGNFNSMMAIISGMNLSPVARLKKTWSKVKTAKFDVLEHHMDPSSNFCNYRTALQGATQRSQTANSSREKIVIPVFNLFVKDIYFLHKIHTNHLPSGHINFKKFWEISRQIHEFMTWTRVECPFEKDKKIQSYLLTAPIYSEEALFIASFESEGPENHMEKDSWKALRTTLLNRA", "length": 450 }, "evidence": [ { "id": "A0A287A4M5", "url": "https://omabrowser.org/oma/group/A0A287A4M5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6DBW1-1", "protein_name": "Ras-GEF domain-containing family member 1B-B", "gene_name": "rasgef1bb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPQTTPYSSKFNPSAYSSSHSHRQPVEENYGGLHYRDNKLVSGSLEALIQLLVPTVDYYPDRSYIFTFLLSSRLFLNPFELMSRVCYLGVDHHRVGDPQMDKKRIRDIAPKIVQLLTEWTETFPYDFRDERMMRSLKEMTHRLAFGDELSRRAMQRLIQRLLRKLTTLGQYEESLATTSAAAAIDRPVALKSKQQLVRRDDCVLNLCDDPFIFAQQLTHIEMERLSYIGPEEFVRAFAQKRPSDNHKSFFSKRKASNLEAYVEWFNRLSYLTATEICMPVKKKHRARVLEFFIDVAQECFNIGNFNSLMAIITGMNMNPVSRLKKTWGKVNTDKFDILVHQMDPSSNFYSYRTALRGATQRSSTAHTSQEMIVIPFFSLFIKDIYFLNEGCANRLSNGHINFEKFWELAKQVSEFLSWRQVICPFERDRKTLQYLISAPVFSEDELQLASYESEGPENNLERDTRRSLRSSLSRM", "length": 475 }, "evidence": [ { "id": "A0A287A4M5", "url": "https://omabrowser.org/oma/group/A0A287A4M5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8N9B8-1", "protein_name": "Ras-GEF domain-containing family member 1A", "gene_name": "RASGEF1A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPQTSVVFSSILGPSCSGQVQPGMGERGGGAGGGSGDLIFQDGHLISGSLEALMEHLVPTVDYYPDRTYIFTFLLSSRVFMPPHDLLARVGQICVEQKQQLEAGPEKAKLKSFSAKIVQLLKEWTEAFPYDFQDEKAMAELKAITHRVTQCDEENGTVKKAIAQMTQSLLLSLAARSQLQELREKLRPPAVDKGPILKTKPPAAQKDILGVCCDPLVLAQQLTHIELDRVSSIYPEDLMQIVSHMDSLDNHRCRGDLTKTYSLEAYDNWFNCLSMLVATEVCRVVKKKHRTRMLEFFIDVARECFNIGNFNSMMAIISGMNLSPVARLKKTWSKVKTAKFDVLEHHMDPSSNFCNYRTALQGATQRSQMANSSREKIVIPVFNLFVKDIYFLHKIHTNHLPNGHINFKKFWEISRQIHEFMTWTQVECPFEKDKKIQSYLLTAPIYSEEALFVASFESEGPENHMEKDSWKTLRTTLLNRA", "length": 481 }, "evidence": [ { "id": "A0A287A4M5", "url": "https://omabrowser.org/oma/group/A0A287A4M5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of Ras protein signal transduction", "id": "GO:0046579", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046579", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4M5", "url": 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"disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A4N0", "url": "https://www.uniprot.org/uniprotkb/A0A287A4N0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EEIG2", "url": "https://www.uniprot.org/uniprotkb/A0A287A4N0", "locus": { "chromosome": "4", "start_pos": 111392338, "end_pos": 111467300, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006850", "url": "https://www.ensembl.org/id/ENSSSCG00000006850" } ] } } ], "crossref": [ { "id": "A0A287A4N0", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A4N0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006850", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006850", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR019448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039931", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039931", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NRYPVKQ", "url": "https://omabrowser.org/oma/group/NRYPVKQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21456", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21456", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21456:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21456:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10358", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10358", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A4N0", "url": "https://www.uniprot.org/uniprotkb/A0A287A4N0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4N0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4N0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMKKKKFKFKVDFGLEELSSVPFVNGVLFCKMRLLDGGSFTAESPREVVQANCVHWKKKFSFMCKMSASAATGILDPCIYRVSVRKELKGGKAYAKLGFADLNLAEFAGSGNTTRRCLLEGYDTKNTRQDNSILKVLISMQLMSGDPCFKTPPSTSMSIPIAGESESLEEDRKGGETLKIHLGIADLSAKSASVPDELGACGHSRTSSYASQQSKVSGYSSCHSRSSSFSELCHRRNTSVGSTSTGIESILEPCDELEQKIAEPNLDPADKEDTASETLNRCPVKQDSVESQLKRVDDTRVDADDIVEKILQSQDFSLDSSAEEEGLRLFVGPGGSTTFGSRHLPNRVGSGAYEQVVIKR", "length": 360, "header": "tr|A0A287A4N0-1|A0A287A4N0_PIG Isoform 1 of EEIG family member 2 OS=Sus scrofa OX=9823 GN=EEIG2 PE=3 SV=2 CANONICAL=A0A287A4N0-1" }, "isoforms": [ { "isoform_ac": "A0A287A4N0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4N0/entry#A0A287A4N0-1", "sequence": { "sequence": "MMKKKKFKFKVDFGLEELSSVPFVNGVLFCKMRLLDGGSFTAESPREVVQANCVHWKKKFSFMCKMSASAATGILDPCIYRVSVRKELKGGKAYAKLGFADLNLAEFAGSGNTTRRCLLEGYDTKNTRQDNSILKVLISMQLMSGDPCFKTPPSTSMSIPIAGESESLEEDRKGGETLKIHLGIADLSAKSASVPDELGACGHSRTSSYASQQSKVSGYSSCHSRSSSFSELCHRRNTSVGSTSTGIESILEPCDELEQKIAEPNLDPADKEDTASETLNRCPVKQDSVESQLKRVDDTRVDADDIVEKILQSQDFSLDSSAEEEGLRLFVGPGGSTTFGSRHLPNRVGSGAYEQVVIKR", "length": 360, "header": "tr|A0A287A4N0-1|A0A287A4N0_PIG Isoform 1 of EEIG family member 2 OS=Sus scrofa OX=9823 GN=EEIG2 PE=3 SV=2 CANONICAL=A0A287A4N0-1" }, "locus": { "chromosome": "4", "start_pos": 111467144, "end_pos": 111395781, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042362.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042362.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038902.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038902.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4N0", "url": "https://www.uniprot.org/uniprotkb/A0A287A4N0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JVH9-1", "protein_name": "EEIG family member 2", "gene_name": "Eeig2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMKKKKFKFKVDFELEELSSVPFVNGVLFCKMRLLDGGTFTAESSREVVQANCVHWRKKFSFMCKMSASASTGILDPCIYRVSVRKELKGGKAYAKLGFADLNLAEFAGSGSTTRRCLLEGYDTKNTRQDNSILKVLISMQLMSGDPCFKTPPSTSMSIPIAGESESLEEDRKGGETLKVHLGIADLSAKSASVPDELGAWGHSRTSSYASQQSKVSGYSTCHSRSSSFSEFCHRRNTSVGSTSTGIESILEPCDETEQITTEPNPDPVSAAAAVKEEEAPEKLPRCPVKQDSVESQLKRVDDTRVDADDVVEKILQSQDFSLDSSAEEEGLRLFVGPGGSTTFGSHHLPNRVGSGAYEQVVIKR", "length": 365 }, "evidence": [ { "id": "A0A287A4N0", "url": "https://omabrowser.org/oma/group/A0A287A4N0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N4Z9-1", "protein_name": "EEIG family member 2", "gene_name": "EEIG2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMMKKKKFKFKVDFELEELSSVPFVNGVLFCKMRLLDGGSFTAESPREVVQANCVHWRKKFSFMCKMSASATTGVLDPCIYRVSVRKELKGGKAYAKLGFADLNLAEFAGSGNTTRRCLLEGYDTKNTRQDNSILKVWISMQLMSGDPCFKTPPSTSMCIPIAGESESLEEDRKGGETLKIHLGIADLSAKSASVPDELGACGHSRTSSYASQQSKVSGYSSCHSRSSSLSELCHRRNTSVGSTSTGIESILEPCDEVEQKTAEPSLDVADKEDTALEILNRCPVKQDSVESQLKRVDDTRVDADDIVEKILQSQDFSLDSSAEEEGLRLFVGPGGRTTFGSRHLPNRVGSGAYEQVVIKR", "length": 361 }, "evidence": [ { "id": "A0A287A4N0", "url": "https://omabrowser.org/oma/group/A0A287A4N0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5T8I3-1", "protein_name": "EEIG family member 2", "gene_name": "EEIG2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMKKKKFKFKVDFELEELSSVPFVNGVLFCKMRLLDGGSFTAESSREVVQANCVRWRKKFSFMCKMSASAATGILDPCIYRVSVRKELKGGKAYAKLGFADLNLAEFAGSGNTTRRCLLEGYDTKNTRQDNSILKVLISMQLMSGDPCFKTPPSTSMSIPIAGESESLQEDRKGGETLKVHLGIADLSAKSASVPDELGACGHSRTSSYASQQSKVSGYSTCHSRSSSFSELCHRRNTSVGSTSTGVESILEPCDEIEQKIAEPNLDTADKEDTASEKLSRCPVKQDSVESQLKRVDDTRVDADDIVEKILQSQDFSLDSSAEEEGLRLFVGPGGSTTFGSHHLPNRVGSGAYEQVVIKR", "length": 360 }, "evidence": [ { "id": "A0A287A4N0", "url": "https://omabrowser.org/oma/group/A0A287A4N0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BQS4-1", "protein_name": "EEIG family member 2", "gene_name": "Eeig2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRLLDGGSFTAESSREVVQANCVHWRKKFSFMCKMSASASTGILDPCIYRVSVRKELKGGKAYAKLGFADLNLAEFAGSGNTTRRCLLEGYDTKNTRQDNSILKVLISMQLMSGDPCFKTPPSTSMSIPIAGESESLEEDRKGGETLKVHLGIADLSAKSASVPDELGAWGHSRTSSYASQQSKVSGYSTCHSRSSSFSEFCHRRNTSVGSTSTGIESILEPCDETEPITAEPSPDPTAAAATATTTTAKEEEASEKLARCPVKQDSVESQLKRVDDTRVDADDIVEKILQSQDFSLDSSAEEEGLRLFVGPGGSTTFGSHHLPNRVGSGAYEQVVIKR", "length": 339 }, "evidence": [ { "id": "A0A287A4N0", "url": "https://omabrowser.org/oma/group/A0A287A4N0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" }, { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A4N0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 360, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A4N0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A4N0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A4N0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4N0" }, { "id": "PS51840", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51840" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2 NT-type", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 142, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 112, "end_pos": 114 }, { "start_pos": 237, "end_pos": 239 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A4N3-1", "uniprot_ac": "A0A287A4N3", "uniprot_id": "A0A287A4N3_PIG", "mass": { "chemical_mass": 74273.0, "monoisotopic_mass": 74273.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "SRCR domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287A4N3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4N3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A4N3", "url": "https://www.uniprot.org/uniprotkb/A0A287A4N3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287A4N3", "locus": {} } ], "crossref": [ { "id": "A0A287A4N3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A4N3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035171", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035171", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19331", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19331", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19331:SF468", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19331:SF468", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00530", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00530", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A4N3", "url": "https://www.uniprot.org/uniprotkb/A0A287A4N3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4N3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGGNGPFRLMRNGTSQCAGRVEMNISGGWRTLCASHWTMANANVVCRQLGCGVALSTPKGAEGGDPMWKARFHCSGAESFLWHCPVTEIRPRCCLSAMTPCLNQQALQPQRRAPPTAQVGVRDSRQLRLVDGGSYCSGRVEILHQGSWGTICDDSWDLDDAHVVCKQLGCGEALSAPGSAHFGAGSGHIWLDDVNCTGKESHVWQCPFGGWGRHDCRHKEDAGVICSESLALRMVSEDQECAGWLEVFYNGTWGGVCRSPMEDITLSIICGQLGCGDSGTLNSSVAFREGSRPRWVDLIQCRKTDSSLWECPSDPWNYNSCYPKEEAYVSCAGRRPKSCPAAAPCTDKEKLRLRGGDSVCSGRVEVWHSGSWGTVCDDSWSLAEAEVVCQQLGCGHALEALRDAAFGPGSGSIWLDEVQCRGRESSLWDCAAGPWGQSDCKHEEDAGVRCSAPVLGLFSLPGILCIILGALLFLVLVILGIQLHRWRAEHQALSAFEDAVDEGLYQEIDDLIKPEKEDLLDSPGHLSDDSVTRLPYYTGDTEEDGDPEYAPEPRGEHVNATGNGYDDVEELPVPEIPFSPGRSENYFSTEDGGGDRYSQTDPHPPGQGFLLLGEHVVLGEQGFWNLVELSPFGISLQSPGEAVNSSMEEKESSLVLRREDPGYDDVDLSIMSCHFLKQETL", "length": 682, "header": "tr|A0A287A4N3-1|A0A287A4N3_PIG Isoform 1 of SRCR domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=A0A287A4N3-1" }, "isoforms": [ { "isoform_ac": "A0A287A4N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4N3/entry#A0A287A4N3-1", "sequence": { "sequence": 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"32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4R4", "url": "https://www.uniprot.org/uniprotkb/A0A287A4R4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4R4", "url": "https://www.uniprot.org/uniprotkb/A0A287A4R4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4R4", "url": "https://www.uniprot.org/uniprotkb/A0A287A4R4" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4R4", "url": "https://www.uniprot.org/uniprotkb/A0A287A4R4" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4R4", "url": "https://www.uniprot.org/uniprotkb/A0A287A4R4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 220, "end_pos": 222, "annotation": "n_glycosylation_sequon" }, { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 352, "end_pos": 354, "annotation": "n_glycosylation_sequon" }, { "start_pos": 745, "end_pos": 747, "annotation": 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"A0A287A4T1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TBC1D25", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T1", "locus": { "chromosome": "X", "start_pos": 42696574, "end_pos": 42682269, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040599", "url": "https://www.ensembl.org/id/ENSSSCG00000040599" } ] } } ], "crossref": [ { "id": "ENSSSCG00000040599", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040599", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100628142", "url": "https://www.ncbi.nlm.nih.gov/gene/100628142", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": 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"categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8854214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020935491", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935491", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A4T1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATATGSPDLAGSGAPPPGGGAQAAAAEEEEREVVRVRVKKCESFLPPEFRSFAVDPQITSLDVLQHILIRAFDLNGKKNFGISYLGRDRLGQEAYLSLLSDWDLSMAFATASKPYLHLRVDIRPTEDSPLLEDWDIISPKDVIGSDVLLAEKRSSLTTAALPFTQSILSQVGRTLSKVQQVLSWSYGEDVKPFKPPLSDAEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKRKSREYEQLKSEWAQRASPEDLEFIRSTVLKDVLRTDRAHPYYAGPEDGPHLRALHDLLTTYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAANFHPDGRAMATKFAHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPPDPPEHEVELVGPPSLGADTGFGAHRGRPVRQRHMLRPAGGGGGSAFEDAVDHLAATSQGPGGSSGGRLLRQASLDDLQQLRDNTGPRRDALVQLPHPAALISSKSLSEPLLNSSDPLLSPSSRPDSPSSSSPPSTQDASPAGDAAVGSPLMPEAGSPQDPGKPLPPPPPLGLPPPQEFGRGNPFMLFLCLAILLEHRDHIMRNGLDYNELAMHFDRLVRKHHLGRVLRRAKALFADYLQSEVWDSEEGAEATAPS", "length": 690, "header": "tr|A0A287A4T1-1|A0A287A4T1_PIG Isoform 1 of TBC1 domain family member 25 OS=Sus scrofa OX=9823 GN=TBC1D25 PE=4 SV=1 CANONICAL=A0A287A4T1-1" }, "isoforms": [ { "isoform_ac": "A0A287A4T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T1/entry#A0A287A4T1-1", "sequence": { "sequence": "MATATGSPDLAGSGAPPPGGGAQAAAAEEEEREVVRVRVKKCESFLPPEFRSFAVDPQITSLDVLQHILIRAFDLNGKKNFGISYLGRDRLGQEAYLSLLSDWDLSMAFATASKPYLHLRVDIRPTEDSPLLEDWDIISPKDVIGSDVLLAEKRSSLTTAALPFTQSILSQVGRTLSKVQQVLSWSYGEDVKPFKPPLSDAEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKRKSREYEQLKSEWAQRASPEDLEFIRSTVLKDVLRTDRAHPYYAGPEDGPHLRALHDLLTTYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAANFHPDGRAMATKFAHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPPDPPEHEVELVGPPSLGADTGFGAHRGRPVRQRHMLRPAGGGGGSAFEDAVDHLAATSQGPGGSSGGRLLRQASLDDLQQLRDNTGPRRDALVQLPHPAALISSKSLSEPLLNSSDPLLSPSSRPDSPSSSSPPSTQDASPAGDAAVGSPLMPEAGSPQDPGKPLPPPPPLGLPPPQEFGRGNPFMLFLCLAILLEHRDHIMRNGLDYNELAMHFDRLVRKHHLGRVLRRAKALFADYLQSEVWDSEEGAEATAPS", "length": 690, "header": "tr|A0A287A4T1-1|A0A287A4T1_PIG Isoform 1 of TBC1 domain family member 25 OS=Sus scrofa OX=9823 GN=TBC1D25 PE=4 SV=1 CANONICAL=A0A287A4T1-1" }, "locus": { "chromosome": "X", "start_pos": 42696342, "end_pos": 42682427, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060360.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060360.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038789.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038789.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4T1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100628142", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100628142", "resource": "KEGG Pathway" }, { "id": "R-SSC-8854214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "resource": "Reactome", "description": "TBC/RABGAPs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6ALA8-1", "protein_name": "TBC1 domain family member 25", "gene_name": "Tbc1d25", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATTSAASDLACSAAPSPVGGASAAAAVEEEEREVVRVRVKKCESFLSPEFRSFAVDPQITSLDVLQHILIRAFDLNGKKNFGISYLARDRLGQEAFLSLLSDWDLSTAFATASKPYLQLRVDIRPSEDSPLLEDWDIISPKDVIGSDVLLADKRSSLTTAALPFTQSILSQVGRTLSKVQQVLSWSYGEDVKPFKPPLSDAEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKRKSREYEQLKSEWAQRVNPEDLEFIRSTVLKDVLRTDRAHPYYAGPEDGPHLRALHDLLTTYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAANFHPDGRAMATKFAHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPPDPPEHEVELVGPPSQVADTGFGSHRGRPVRQRHMLRPAGGGSSAFEDAVVHLATSSQGPSSGGRLLRQASLDGLQQLRDNMSPRKDLLVQLSHPATLISSKSLSEPLLNSPDPLLSSSSRPDSPSSSSPPSTQEASPSGDVAVGSPSMPEVGSPRDPGKSVPPPPPMGLPPPQEFGRGNPFMLFLCLAILLEHRDHIMRNGLDYNELAMHFDRLVRKHHLGRVLRRAKALFADYLQSEVWDSEEGAEATAPS", "length": 688 }, "evidence": [ { "id": "A0A287A4T1", "url": "https://omabrowser.org/oma/group/A0A287A4T1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1A5B6-1", "protein_name": "TBC1 domain family member 25", "gene_name": "Tbc1d25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRPPAQARWEGQGPTAPLRLRSGARWGRGRPHCWVYVRVRVTIGYHLDRDDSGGMATTSAASDSACSAAPPPVGGAQAAAAVEEEEREVVRVRVKKCESFLSPEFRSFAVDPQITSLDVLQHILIRAFDLNGKKNFGISYLARDRLGQETFLSLLSDWDLSTAFATASKPYLQLRVDIRPSEDSPLLEDWDIISPKDVIGSDVLLAEKRSSLTTAALPFTQSILSQVGRTLSKVQQVLSWSYGEDVKPFKPPLSDAEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKRKSREYEQLKSEWAQRVNPEDLEFIRSTVLKDVLRTDRAHPYYAGPEDGPHLRALHDLLTTYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAANFHPDGRAMATKFAHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPPDPPEHEVELVGPPSQVADTGFGSHRGRPVRQRHMLRPAGGGGGAFEDAVVHLAASSQGPSGGGRLLRQASLDGLQQLRDNMGLRKDHLVQLSHPATLISSKSLSEPLLNSPDPLLSTSSRPDSPSSSSPPSTQEASPSGDIAVGSPLMQEVGSPRDPGKPVPPPPPMGLPPPQEFGRGNPFMLFLCLAILLEHRDHIMRNGLDYNELAMHFDRLVRKHHLGRVLRRAKALFADYLQSEVWDSEEGAEATAPS", "length": 742 }, "evidence": [ { "id": "A0A287A4T1", "url": "https://omabrowser.org/oma/group/A0A287A4T1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0S696-1", "protein_name": "TBC1 domain family member 25", "gene_name": "tbc1d25", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSVEEERGVVRVKVKKCEGVLPVEFRSFAVDPQITSLEVLQHILIRAFELNGKRNFGISYLSRDRAGVEVYVSLLSDWDLDAAFVSAAKPYLQLKMDIKPSEDSPVLEDWDIISPKDVIGSDQLQGEKRSLASAALPFTQSLLSQVGRTLSRVQQALSWSYGEEVKPFKPPLSDAEFHNYLNSQGQLSRPEELRLRIYHGGVESSLRKVVWRYLLNVYPDGLTGQERMDYMKRKTREYDQLKSEWTARVSSEELEFIRGNVLKDVLRTDRAHPYYAGSEDSPHLTALTDLLTTFAITHPQVSYCQGMSDIASPILAVMDNEAHAFICFCGIMKRLEGNFRPDGQLMSIKFQHLKLLLQYSDPEFYSYLVSKGADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPPDPPETEVELLGPAFEADQSDGSHNVDMEEMEEKQTERQRRRHMLRPSREEADGERNLVMEEERGPRKEGEGEYDVESMVRNDIPAQPPSFEKQGSFGEFKYYNGRTEDSFEVNENDSSDPTLSPVQFQSAHSTLPFSVRQSTEESEDDPGEQEPLINNLTPSSPGQRDSPNGQAASPLSTLPSGLPNWKSSSNQSSNSASSWRTASPDALSKCTSSSSSGEKALSPDKPSGGFASSQPVLNGTGAQSPSVVPGKSLLASPSQGYNHSLLSSPVLSFGKSPSLPKAFSSNLPSPCRPTGSGVSSPNTNKPEGGGIKPCSLPPPQEFGKGNPFMLFLCLSILLEHRDHIIKNSLDYNELAMHFDRLVRRHNLGRILQRAKALFADYLQSEVWDSEEGDEVSLDSPTTAATSPQTPSTRPPFLNVQPSQGAFPNSTYNLANTIPSPTTPIALSPSAS", "length": 863 }, "evidence": [ { "id": "A0A287A4T1", "url": "https://omabrowser.org/oma/group/A0A287A4T1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E1BHZ5-1", "protein_name": "TBC1 domain family member 25", "gene_name": "TBC1D25", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATASGSSDLAGSGAPSPGGGAQAAAAEEEEREVVRVRVKKCESFLPLEFRSFAVDPQITSLDVLQHILIRAFDLNGKKNFGISYLGRDRMGQEAYLSLLSDWDLSTAFATASKPYLHLRVDIRPTEDSPLLEDWDIISPKDVIGSDVLLAEKRSSLTTAALPFTQSIISQVGRTLSKVQQVLSWSYGEDVKPFKPPLSDAEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKRKSREYEQLKSEWAQRASPEDLEFIRSTVLKDVLRTDRAHPYYAGPEDGPHLRALHDLLTTYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAANFHPDGRAMATKFAHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPPDPPEHEVELVGPPSLVVDMGFGSHRGRPMRQRHMLRPAGGGGGAFEDAVDHLTTSSQGPGGGGRLLRQASLDDLQQLRDRTGPRRDSLIQLPYPAALIGSKSLSEPLLNSSDPLLSPSSHPDSPSSSSPPSTQDASPAGDVAAGSPLMPEVGSPQDSGKSLPPPPPLGLPPPQEFGRGNPFMLFLCLAILLEHRDHIMRNGLDYNELAMHFDRLVRKHHLGRVLRRAKALFADYLQSEMWDSEEGAEATAPS", "length": 687 }, "evidence": [ { "id": "A0A287A4T1", "url": "https://omabrowser.org/oma/group/A0A287A4T1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3MII6-1", "protein_name": "TBC1 domain family member 25", "gene_name": "TBC1D25", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATASGASDLSGSGAPPPGVGAQAAAAAEEEEREVVRVRVKKCESFLPPEFRSFAVDPQITSLDVLQHILIRAFDLSGKKNFGISYLGRDRLGQEVYLSLLSDWDLSTAFATASKPYLQLRVDIRPSEDSPLLEDWDIISPKDVIGSDVLLAEKRSSLTTAALPFTQSILTQVGRTLSKVQQVLSWSYGEDVKPFKPPLSDAEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKRKSREYEQLKSEWAQRANPEDLEFIRSTVLKDVLRTDRAHPYYAGPEDGPHLRALHDLLTTYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAANFHPDGRAMATKFAHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPPDPPEHEVELVGPPSQVADAGFGGHRGWPVRQRHMLRPAGGGGSTFEDAVDHLATASQGPGGGGRLLRQASLDGLQQLRDNMGSRRDPLVQLPHPAALISSKSLSEPLLNSPDPLLSSFSHPDSPSSSSPPSTQEASPTGDMAVGSPLMQEVGSPKDPGKSLPPVPPMGLPPPQEFGRGNPFMLFLCLAILLEHRDHIMRNGLDYNELAMHFDRLVRKHHLGRVLRRARALFADYLQSEVWDSEEGAEATAAS", "length": 688 }, "evidence": [ { "id": "A0A287A4T1", "url": "https://omabrowser.org/oma/group/A0A287A4T1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4T1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "autophagosome", "id": "GO:0005776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005776", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4T1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of autophagosome maturation", "id": "GO:1901096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901096", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4T1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 547, "end_pos": 549, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A4T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T1" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 227, "end_pos": 433, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 547, "end_pos": 549 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A4T7-1", "uniprot_ac": "A0A287A4T7", "uniprot_id": "A0A287A4T7_PIG", "mass": { "chemical_mass": 50603.0, "monoisotopic_mass": 50603.0 }, "refseq": { "ac": "XP_020942188", "name": "lysine-rich nucleolar protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942188" }, "gene_names": [ { "name": "KNOP1", "type": "recommended", "evidence": [ { "id": "A0A287A4T7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T7" } ] }, { "name": "KNOP1", "type": "synonym", "evidence": [ { "id": "XP_020942188", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942188" } ] } ], "protein_names": [ { "name": "Lysine rich nucleolar protein 1", "type": "synonym", "evidence": [ { "id": "A0A287A4T7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T7/entry#names_and_taxonomy" } ] }, { "name": "lysine-rich nucleolar protein 1", "type": "synonym", "evidence": [ { "id": "XP_020942188", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942188" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A4T7", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KNOP1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T7", "locus": { "chromosome": "3", "start_pos": 26035571, "end_pos": 26022160, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025203", "url": "https://www.ensembl.org/id/ENSSSCG00000025203" } ] } } ], "crossref": [ { "id": "A0A287A4T7", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A4T7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025203", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025203", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100622638", "url": "https://www.ncbi.nlm.nih.gov/gene/100622638", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100622638", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622638", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WFCEARD", "url": "https://omabrowser.org/oma/group/WFCEARD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A4T7", "url": "https://www.orthodb.org/?gene=A0A287A4T7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22426", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22426", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22426:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22426:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15477", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15477", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020942188", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942188", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A4T7", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4T7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9E0", "url": "https://www.uniprot.org/uniprotkb/I3L9E0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9E0-1", "url": "https://www.uniprot.org/uniprotkb/I3L9E0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MITKTHKGDLGLGLPEKKKKKKKVVPEPETPYLVLNSDSYFTEACPTKAISSLKNVVHGQALEVPPVKKKKKKKGHSAVCEEPLKPEPKLHAGRTESSPGPRKQVLLPSESLRGERKKRKSTSPCARVRTSPDPRQGEEVTRVGKKLKKHKKEKKAQEATAFSAEDPWLCEAGDASYMCSVGKDGEERAALGQKRKQGSPEEHKVKTKKRKKIRQKGDSPLEHPKLSRSEESCPKKGSKKKPVRDEAPEYIPIGDGPKTPAKKKLKSKKKAEPTDTEKPALKRKKKKKRQESRGAEESWEEEPDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEAPDTKKCQQGTQFGQWDTAGFENEEQKLKFLKLMGGFKNLSASLGRAPAAAGRPSMALSKQAADALQQNLQRDYDRALSWKHSRGAGLGFSPAPDKIFYIDRNASKSVKFGD", "length": 454, "header": "tr|A0A287A4T7-1|A0A287A4T7_PIG Isoform 1 of Lysine rich nucleolar protein 1 OS=Sus scrofa OX=9823 GN=KNOP1 PE=4 SV=2 CANONICAL=A0A287A4T7-1" }, "isoforms": [ { "isoform_ac": "A0A287A4T7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T7/entry#A0A287A4T7-1", "sequence": { "sequence": "MITKTHKGDLGLGLPEKKKKKKKVVPEPETPYLVLNSDSYFTEACPTKAISSLKNVVHGQALEVPPVKKKKKKKGHSAVCEEPLKPEPKLHAGRTESSPGPRKQVLLPSESLRGERKKRKSTSPCARVRTSPDPRQGEEVTRVGKKLKKHKKEKKAQEATAFSAEDPWLCEAGDASYMCSVGKDGEERAALGQKRKQGSPEEHKVKTKKRKKIRQKGDSPLEHPKLSRSEESCPKKGSKKKPVRDEAPEYIPIGDGPKTPAKKKLKSKKKAEPTDTEKPALKRKKKKKRQESRGAEESWEEEPDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEAPDTKKCQQGTQFGQWDTAGFENEEQKLKFLKLMGGFKNLSASLGRAPAAAGRPSMALSKQAADALQQNLQRDYDRALSWKHSRGAGLGFSPAPDKIFYIDRNASKSVKFGD", "length": 454, "header": "tr|A0A287A4T7-1|A0A287A4T7_PIG Isoform 1 of Lysine rich nucleolar protein 1 OS=Sus scrofa OX=9823 GN=KNOP1 PE=4 SV=2 CANONICAL=A0A287A4T7-1" }, "locus": { "chromosome": "3", "start_pos": 26035066, "end_pos": 26025346, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055527.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055527.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038794.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038794.3" } ] } }, { "isoform_ac": "I3L9E0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4T7/entry#I3L9E0-1", "sequence": { "sequence": "MITKTHKGDLGLGLPEKKKKKKKVVPEPETPYLVLNSDSYFTEACPTKAISSLKNVVHGQALEVPPVKKKKKKKGHSAVCEEPLKPEPKLHAGRTESSPGPRKQVLLPSESLRGERKKRKSTSPCARVRTSPDPRQGEEVTRVGKKLKKHKKEKKAQEATAFSAEDPWLCEAGDASYMCSVGKDGEERAALGQKRKQGSPEEHKVKTKKRKKIRQKGDSPLEHPKLSRSEESCPKKGSKKKPVRDEAPEYIPIGDGPKTPAKKKLKSKKKAEPTDTEKPALKRKKKKKRQESRGAEESWEEEPDTDLEVVLEKKGNMDEAHIDQGTQFGQWDTAGFENEEQKLKFLKLMGGFKNLSASLGRAPAAAGRPSMALSKQAADALQQNLQRDYDRALSWKHSRGAGLGFSPAPDKIFYIDRNASKSVKFGD", "length": 427, "header": "tr|I3L9E0-1|A0A287A4T7_PIG Computationally mapped isoform of Lysine rich nucleolar protein 1 OS=Sus scrofa OX=9823 GN=KNOP1 PE=4 SV=4 CANONICAL=A0A287A4T7-1" }, "locus": { "chromosome": "3", "start_pos": 26035066, "end_pos": 26025346, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027076.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027076.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020652.4", "url": "https://www.ensembl.org/id/ENSSSCP00000020652.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L9E0", "url": "https://www.uniprot.org/uniprotkb/I3L9E0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622638", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622638", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AUQ0-1", "protein_name": "Lysine-rich nucleolar protein 1", "gene_name": "Knop1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDAVSTATQGAAKLRPGRRTISRGRARNSKLTSGSRLRGCSRGDAWPANRPVMVNKTQKEDLGPRLPEKKKKKKKKKKVANVSEPETQYSVLNNNDYFIDVSPPRATSPFNNVGEVQVPEMSLGKRKKKKKSCSTHLDEYLGKDEPTWTRQIKSPSPRRQVLEQSAEGLIREKKKKRRKSLSKVASQGSGLKTSPDSKHAKEVSKAGRKPKKHRKEKKLPDMEAFPPQDSWIPEAGDALHSCLEGAEAEEQAALGHKRKQGSPRDHSMKKKKKKKTHQEGDILPVNSKISMENSLKKGSKKSVRSEALDFIPIDSLKAPGKKKVKSKKKVEQPVGEGLAVKRKKKKRRKESGVKEDPWQEEKEESDTDLEVVLEKKGNMDEACIDQVRRKALQEEIDRESGKTEVSEPKKWTGTQFGQWDTAGFENEEQKLKFLKLMGGFKHLSPSFNRPPSMTVRSNMALDKKSSDTLQQSLQQDYDRAMSWKYSRGAGLGFNSEARKVFYIDRNASKSIKLQD", "length": 515 }, "evidence": [ { "id": "A0A287A4T7", "url": "https://omabrowser.org/oma/group/A0A287A4T7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A5D7J3-1", "protein_name": "Lysine-rich nucleolar protein 1", "gene_name": "KNOP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MITKAHKGEVGLGLPEKKKKKKKVVKEPKTQYSVLNSDNYFAEVCPRATPPLKGVIQEQAPRMPLVKKKKKKKGHSTICEEHLEPEITLRAGRTERSHSPRTQALGLSKSLSAEKRKSMSPGSRVKTSPDPRQDEEVTRVGKKLKKHKKEKKAKEATAFSGRDPWFCEAGNTVYTHSVGKDGVREQAALGQKQKQGSPREHSVKMKKKKKIHWEGDPPLGHPECSWSLESSPTKGSKKKPVRVEAPEYIPIGDGSRASVKKKVKSKKRVEQADTEEPALKRKKKKKKRQQSEVAEEPWEEEPDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEAYDTKKWTGTQFGQWDTAGFENEEQKLKFLKLMGGFKNLPPSFSRPSPTVARPSMALSKKAADTLQRNLQQDYDRALSWKYSRGAGLGFSTAPAKVFYIDRNASKSIKFED", "length": 452 }, "evidence": [ { "id": "A0A287A4T7", "url": "https://omabrowser.org/oma/group/A0A287A4T7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "B8A4H3-1", "protein_name": "Lysine-rich nucleolar protein 1", "gene_name": "knop1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": 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[ { "id": "A0A287A4W1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A4W1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A4W1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4W1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287A4W1", "locus": {} } ], "crossref": [ { "id": "A0A287A4W1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A4W1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001060", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001060", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001310", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001310", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036265", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036265", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23089", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23089", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01230", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01230", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "67916", "url": "https://www.rhea-db.org/rhea/67916", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A4W1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4W1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4W1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4W1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADGIAKAQAAGPGGDTIFGKVIGKEMPAKIASEDAQCLAFHDISPRAPTHFLAIAKKCTSQILPQRTTVKYVM", "length": 74, "header": "tr|A0A287A4W1-1|A0A287A4W1_PIG Isoform 1 of HIT domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287A4W1-1" }, "isoforms": [ { "isoform_ac": "A0A287A4W1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4W1/entry#A0A287A4W1-1", "sequence": { "sequence": "MADGIAKAQAAGPGGDTIFGKVIGKEMPAKIASEDAQCLAFHDISPRAPTHFLAIAKKCTSQILPQRTTVKYVM", "length": 74, "header": "tr|A0A287A4W1-1|A0A287A4W1_PIG Isoform 1 of HIT domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287A4W1-1" }, "locus": { "chromosome": "7", "start_pos": 11240510, "end_pos": 11239692, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001154.3", "url": "https://www.ensembl.org/id/ENSSSCT00000001154.3" }, { "database": "Ensembl Peptide", "id": 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"url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "catalytic activity", "id": "GO:0003824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003824", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4W1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4W1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "67916", "name": "", "equation": "adenosine 5'-phosphoramidate + H2O = NH4(+) + AMP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "67916", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/67916" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A4W1-F1", "pdb_chain": 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"MGVGVSLLLQFSLTSGGYHCVGRSRRSSRRSIPRRSWKKPHLQLHSRQAEEEPMLERRCKGPVAMGPAQPQLLSGPSQESPQTLEQEPQGLRSQGMAMTQSGSKALQRAHRCAHCRRHFPGWVALWLHARHCQARLPLPCPECGRRFRHAPFLALHCQVHAAATPDLGFACHLCGQSFRGWVALILHLRAHSVAKRPIACPDCERRFWRRKQLRAHRRRCHPPAPEARPFICGNCGRSFAQWDQLVAHKRVHVAEALEEAAAKALGPRPRGRPAVTAPRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTGERPHQCPECGKRFTNKPYLTSHRRIHTGEKPYPCTECGRRFRHKPNLLSHSKIHKRSEGAAQAAPGSGSPQPPAGPPEPLAEPSAEAPRKPAREPAQKPLGPAEEPPRDQAEAAASLYGCEDCGRSFRLERFLRAHQRQHTGERPFTCAECGKNFGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPERPFVCPDCGKAFRHKPYLAAHRRIHTGEKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQKSNLITHRKSHIRDGAFCCAICGQTFDDEEKLLAHQKKHDV", "length": 623, "header": "tr|A0A287A527-1|A0A287A527_PIG Isoform 1 of DNA-binding protein REPIN1 OS=Sus scrofa OX=9823 GN=REPIN1 PE=4 SV=3 CANONICAL=A0A287A527-1" }, "isoforms": [ { "isoform_ac": "A0A287A527-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A527/entry#A0A287A527-1", "sequence": { "sequence": "MGVGVSLLLQFSLTSGGYHCVGRSRRSSRRSIPRRSWKKPHLQLHSRQAEEEPMLERRCKGPVAMGPAQPQLLSGPSQESPQTLEQEPQGLRSQGMAMTQSGSKALQRAHRCAHCRRHFPGWVALWLHARHCQARLPLPCPECGRRFRHAPFLALHCQVHAAATPDLGFACHLCGQSFRGWVALILHLRAHSVAKRPIACPDCERRFWRRKQLRAHRRRCHPPAPEARPFICGNCGRSFAQWDQLVAHKRVHVAEALEEAAAKALGPRPRGRPAVTAPRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTGERPHQCPECGKRFTNKPYLTSHRRIHTGEKPYPCTECGRRFRHKPNLLSHSKIHKRSEGAAQAAPGSGSPQPPAGPPEPLAEPSAEAPRKPAREPAQKPLGPAEEPPRDQAEAAASLYGCEDCGRSFRLERFLRAHQRQHTGERPFTCAECGKNFGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPERPFVCPDCGKAFRHKPYLAAHRRIHTGEKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQKSNLITHRKSHIRDGAFCCAICGQTFDDEEKLLAHQKKHDV", "length": 623, "header": "tr|A0A287A527-1|A0A287A527_PIG Isoform 1 of DNA-binding protein REPIN1 OS=Sus scrofa OX=9823 GN=REPIN1 PE=4 SV=3 CANONICAL=A0A287A527-1" }, "locus": { "chromosome": "18", "start_pos": 55929633, "end_pos": 55926415, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060403.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060403.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039038.3", "url": "https://www.ensembl.org/id/ENSSSCP00000039038.3" } ] } }, { "isoform_ac": "A0A287B914-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A527/entry#A0A287B914-1", "sequence": { "sequence": "MGVGVSLLLQFSLTSGGYHCVGRSRRSSRRSIPRRSWKKPHLQLHSRQEEEPMLERRCKGPVAMGPAQPQLLSGPSQESPQTLEQEPQGLRSQGMAMTQSGSKALQRAHRCAHCRRHFPGWVALWLHARHCQARLPLPCPECGRRFRHAPFLALHCQVHAAATPDLGFACHLCGQSFRGWVALILHLRAHSVAKRPIACPDCERRFWRRKQLRAHRRRCHPPAPEARPFICGNCGRSFAQWDQLVAHKRVHVAEALEEAAAKALGPRPRGRPAVTAPRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTGERPHQCPECGKRFTNKPYLTSHRRIHTGEKPYPCTECGRRFRHKPNLLSHSKIHKRSEGAAQAAPGSGSPQPPAGPPEPLAEPSAEAPRKPAREPAQKPLGPAEEPPRDQAEAAASLYGCEDCGRSFRLERFLRAHQRQHTGERPFTCAECGKNFGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPERPFVCPDCGKAFRHKPYLAAHRRIHTGEKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQKSNLITHRKSHIRDGAFCCAICGQTFDDEEKLLAHQKKHDV", "length": 622, "header": "tr|A0A287B914-1|A0A287B914_PIG Computationally mapped isoform of DNA-binding protein REPIN1 OS=Sus scrofa OX=9823 GN=REPIN1 PE=4 SV=2 CANONICAL=A0A287A527-1" }, "locus": { "chromosome": "18", "start_pos": 55929633, "end_pos": 55926415, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041213.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041213.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052591.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052591.2" } ] } }, { "isoform_ac": "A0A5G2R8G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A527/entry#A0A5G2R8G4-1", "sequence": { "sequence": "MDAPRASALPAGEQRKNRCWNVAARAPWPWALPSPNSFLDPPRSHPRPWSRSPKG", "length": 55, "header": "tr|A0A5G2R8G4-1|A0A287A527_PIG Computationally mapped isoform of DNA-binding protein REPIN1 OS=Sus scrofa OX=9823 GN=REPIN1 PE=4 SV=2 CANONICAL=A0A287A527-1" }, "locus": { "chromosome": "18", "start_pos": 55928035, "end_pos": 55925650, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067136.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067136.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072608.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072608.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R8G4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8G4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q0VCC5-1", "protein_name": "DNA-binding protein REPIN1", "gene_name": "REPIN1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLERRCRGPVAMGPAQPRLLSGPSQESPQTLEKEPQGLRSRGTAAAQSGGQALGRAHRCAHCRRHFPGWVALWLHARRCQARLPRPCPECGRRFRHAPFLALHCQVHAAATPDQGFACHLCGQSFRGWVALVLHLRAHSAAKRPIACPACERRFWRRKQLRAHSRRCHPPAPEARPFICGNCGRSFAQWDQLVTHKRVHVAEALEEAAAKALGPRPRGRPAVTAPRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTGERPHQCPECGKRFTNKPYLTSHRRIHTGEKPYPCTECGRRFRHKPNLLSHSKIHKRSEGSAQGGPQPPASAPERTPEPPPEPAPEPAEVPVGPGQPSAAAEAPPSLHTCADCGRGFRLERFLRAHQRQHGGERPFACAECGKHFGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPERPFVCPDCGKAFRHKPYLAAHRRIHTGEKPYVCPECGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQKSNLITHRKSHIRDGAFCCAICGQTFDDEGKLLAHQKKHDV", "length": 559 }, "evidence": [ { "id": "A0A287A527", "url": "https://omabrowser.org/oma/group/A0A287A527/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5U4E2-1", "protein_name": "DNA-binding protein REPIN1", "gene_name": "Repin1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLEQRCRGPTAMGPAQPWLFSGPSQESSQPDRGLRYQGKSAQPRGQTPGKVHRCAHCRKRFPGWVALWLHARRCQARLPLPCHECNQRFRHAPFLALHLQVHASAVPDLGFICHLCGHSFRGWVALVLHLRAHSASKRPITCPECDRRFWRQKQLRAHLRRCQPPVPEARPFICGNCGRSFAQWDQLVVHKRVHVAEALEEAAAKALGPRPRGRPAAPRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTGERPHQCPECGKRFTNKPYLTSHRRIHTGEKPYPCTECGRRFRHKPNLLSHSKIHKRLEVSAQAAPHPESHQIAAEPMAQPALGVPLGSPRTPAEAPALLHSCSDCGRSFRLERFLRLHQRQHTGERPFACTECGKNFGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPERPFVCPDCGKAFRHKPYLAAHRRIHTGEKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQKSNLITHRKSHIRDGAFCCAICGQTFDDEDRLLMHQKKHDA", "length": 545 }, "evidence": [ { "id": "A0A287A527", "url": "https://omabrowser.org/oma/group/A0A287A527/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q68H95-1", "protein_name": "DNA-binding protein REPIN1", "gene_name": "Repin1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLERRCRGPTAMGPAHPWLFSGPSQESSQPNRGLRYQGKSVAQPGGPAPVKVHRCAHCRKRFPGWVALWLHTRRCQARLPLPCHECNQRFRHAPFLALHLQVHASAVPDLGFICHLCGHSFRGWVALVLHLRAHSASKRPITCPECNKRFWRQKQLRAHLRRCQPPAPEARPFICGNCGRSFAQWDQLVVHKRVHVAEALEEAAAKALGPRPRGRPSVTAPRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTGERPHQCPECGKRFTNKPYLTSHRRIHTGEKPYPCTECGRRFRHKPNLLSHSKIHKRSEVSAQAASHTGSHLIAAEPMAQPALGVPLGSLRTPAEAPASLHSCTDCGRSFRLERFLRLHQRQHTGERPFTCTECGKNFGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPERPFVCPDCGKAFRHKPYLAAHRRIHTGEKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQKSNLITHRKSHIRDGAFCCAICGQTFDDEDRLLMHQKKHDA", "length": 548 }, "evidence": [ { "id": "A0A287A527", "url": "https://omabrowser.org/oma/group/A0A287A527/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9BWE0-3", "protein_name": "DNA-binding protein REPIN1", "gene_name": "REPIN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLERRCRGPLAMGLAQPRLLSGPSQESPQTLGKESRGLRQQGTSVAQSGAQAPGRAHRCAHCRRHFPGWVALWLHTRRCQARLPLPCPECGRRFRHAPFLALHRQVHAAATPDLGFACHLCGQSFRGWVALVLHLRAHSAAKRPIACPKCERRFWRRKQLRAHLRRCHPPAPEARPFICGNCGRSFAQWDQLVAHKRVHVAEALEEAAAKALGPRPRGRPAVTAPRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTGERPHQCPECGKRFTNKPYLTSHRRIHTGEKPYPCKECGRRFRHKPNLLSHSKIHKRSEGSAQAAPGPGSPQLPAGPQESAAEPTPAVPLKPAQEPPPGAPPEHPQDPIEAPPSLYSCDDCGRSFRLERFLRAHQRQHTGERPFTCAECGKNFGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPDRPFVCPDCGKAFRHKPYLAAHRRIHTGEKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQKSNLITHRKSHIRDGAFCCAICGQTFDDEERLLAHQKKHDV", "length": 567 }, "evidence": [ { "id": "A0A287A527", "url": "https://omabrowser.org/oma/group/A0A287A527/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A527", "url": "https://www.uniprot.org/uniprotkb/A0A287A527" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287A527", "url": "https://www.uniprot.org/uniprotkb/A0A287A527" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287A527", "url": "https://www.uniprot.org/uniprotkb/A0A287A527" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287A527", "url": "https://www.uniprot.org/uniprotkb/A0A287A527" } ], "pmid": "" }, { "name": "regulation of fatty acid transport", "id": "GO:2000191", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000191", "evidence": [ { "database": "UniProtKB", "id": "A0A287A527", "url": "https://www.uniprot.org/uniprotkb/A0A287A527" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287A527", "url": "https://www.uniprot.org/uniprotkb/A0A287A527" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A287A527", "url": "https://www.uniprot.org/uniprotkb/A0A287A527" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A287A527", "url": "https://www.uniprot.org/uniprotkb/A0A287A527" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287A527", "url": "https://www.uniprot.org/uniprotkb/A0A287A527" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A527-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 623, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A527-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A527" } ], "lectin_list": [], 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"start_pos": 103345985, "end_pos": 103760292, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002410", "url": "https://www.ensembl.org/id/ENSSSCG00000002410" } ] } } ], "crossref": [ { "id": "A0A286ZYM9", "url": "https://alphafold.ebi.ac.uk/entry/A0A286ZYM9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002410", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002410", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520033", "url": "https://www.ncbi.nlm.nih.gov/gene/100520033", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46657", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46657", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46657:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46657:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28367", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28367", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZYM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZYM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEE1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEE1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T1I7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T1I7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T1I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T1I7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L554", "url": "https://www.uniprot.org/uniprotkb/I3L554", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L554-1", "url": "https://www.uniprot.org/uniprotkb/I3L554-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAESSSDSDHFCSRDRLSRWAASSLQRETRNRHTADVTEKVNTITSTLQDTSRNLRQVDQMLGQYREYSNGQAGAIENLKESLEQSIGQLRSQRLSRNSGGRRSISVTSLSTSDLDGGTVIESHRFPPTSPLKDYGDQQGIKRNRSRTGVRFVQETDDMGQFHAFHQSLRDLSSEQVRLGDDFNRELVRRSRSDAETKRALEELTEKLNEAQRKEVVSDRVERRLQEIEREMRTEREVVERRQDQLGLISLQLQEALKKQEAKADENEEVMKNKLRQTETEKSKLEQELELSRRLLNQSEGSREILLHQVEELRTQLMKLEGDQKDLQHQVPQISKQQSNHQDKQGDDWRIRRGVEREKENLEKQMSDLRVQLNFSAMAAELEEVKRCMERKDKERVHLAAQVENLTCELENKEKQQLQMLDELKEIQSHFETCDARRKRADLQISKLTQHAEDATKQAEQYLTEFQQSEALRQEAEKRREELKVKAQESIRQWKLKHKKLERALEKQSETLDQLAEKNNQILKEKDELKSQLYAALQQIENLRKELNDVLTKRALQEEELHCKEQKLNDVKSHQADLELEVKDSLDTIHRLEGELKKQSKIQSQMKVDKAHLEEEIAELKKSQAKDKAQLLEMQEAIKDLSAIRADLANKLSEEQKARKEVLKNLSDLKTQAKSKDEETATIITQLKLERDVHQRELEDLTSSLQSVKSKHEQNIQELMKHFKKEKSEAESHIRTLKAESLEDKNMAKVQRCQLEKLKSQYDRLTEELTQNENENKKLKLKYQCLKDQLEEKEKHISNEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDAACKTFSRDSMEKLKVFSSGPDINYDPHRWLAESKTKLQWLCEELKERENREKSLQHQLMLCRQQLRNMTENKESELQCLFEQIERQEQLLEEIHREKRDLLEETHRKDEEMESLQDRVNALEMSTRVALDHLESVPEKLSLLEDFKGFRDSRSLSERSDGRYSRYRFSRESLQQRQDDTTYRVPNFKDDRDFVERSHAHGLDQSSSWQDHSHFLSSPRFSHLNSFTQRTVAPDSPLIMEDATDLLMDGTSPQSKKEESESK", "length": 1099, "header": "tr|A0A286ZYM9-1|A0A286ZYM9_PIG Isoform 1 of Centrosomal protein 128 OS=Sus scrofa OX=9823 GN=CEP128 PE=4 SV=2 CANONICAL=A0A286ZYM9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZYM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9/entry#A0A286ZYM9-1", "sequence": { "sequence": "MAESSSDSDHFCSRDRLSRWAASSLQRETRNRHTADVTEKVNTITSTLQDTSRNLRQVDQMLGQYREYSNGQAGAIENLKESLEQSIGQLRSQRLSRNSGGRRSISVTSLSTSDLDGGTVIESHRFPPTSPLKDYGDQQGIKRNRSRTGVRFVQETDDMGQFHAFHQSLRDLSSEQVRLGDDFNRELVRRSRSDAETKRALEELTEKLNEAQRKEVVSDRVERRLQEIEREMRTEREVVERRQDQLGLISLQLQEALKKQEAKADENEEVMKNKLRQTETEKSKLEQELELSRRLLNQSEGSREILLHQVEELRTQLMKLEGDQKDLQHQVPQISKQQSNHQDKQGDDWRIRRGVEREKENLEKQMSDLRVQLNFSAMAAELEEVKRCMERKDKERVHLAAQVENLTCELENKEKQQLQMLDELKEIQSHFETCDARRKRADLQISKLTQHAEDATKQAEQYLTEFQQSEALRQEAEKRREELKVKAQESIRQWKLKHKKLERALEKQSETLDQLAEKNNQILKEKDELKSQLYAALQQIENLRKELNDVLTKRALQEEELHCKEQKLNDVKSHQADLELEVKDSLDTIHRLEGELKKQSKIQSQMKVDKAHLEEEIAELKKSQAKDKAQLLEMQEAIKDLSAIRADLANKLSEEQKARKEVLKNLSDLKTQAKSKDEETATIITQLKLERDVHQRELEDLTSSLQSVKSKHEQNIQELMKHFKKEKSEAESHIRTLKAESLEDKNMAKVQRCQLEKLKSQYDRLTEELTQNENENKKLKLKYQCLKDQLEEKEKHISNEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDAACKTFSRDSMEKLKVFSSGPDINYDPHRWLAESKTKLQWLCEELKERENREKSLQHQLMLCRQQLRNMTENKESELQCLFEQIERQEQLLEEIHREKRDLLEETHRKDEEMESLQDRVNALEMSTRVALDHLESVPEKLSLLEDFKGFRDSRSLSERSDGRYSRYRFSRESLQQRQDDTTYRVPNFKDDRDFVERSHAHGLDQSSSWQDHSHFLSSPRFSHLNSFTQRTVAPDSPLIMEDATDLLMDGTSPQSKKEESESK", "length": 1099, "header": "tr|A0A286ZYM9-1|A0A286ZYM9_PIG Isoform 1 of Centrosomal protein 128 OS=Sus scrofa OX=9823 GN=CEP128 PE=4 SV=2 CANONICAL=A0A286ZYM9-1" }, "locus": { "chromosome": "7", "start_pos": 103740495, "end_pos": 103346990, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037305.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037305.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036734.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036734.2" } ] } }, { "isoform_ac": "A0A287BEE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9/entry#A0A287BEE1-1", "sequence": { "sequence": "MVLVVWSQAQTTCNIPELKIAFPFSLESHRFPPTSPLKDYGDQQGIKRNRSRTGVRFVQETDDMGQFHAFHQSLRDLSSEQVRLGDDFNRELVRRSRSDAETKRALEELTEKLNEAQRKEVVSDRVERRLQEIEREMRTEREVVERRQDQLGLISLQLQEALKKQEAKADENEEVMKNKLRQTETEKSKLEQELELSRRLLNQSEGSREILLHQVEELRTQLMKLEGDQKDLQHQVPQISKQQSNHQDKQGDDWRIRRGVEREKENLEKQMSDLRVQLNFSAMAAELEEVKRCMERKDKERVHLAAQVENLTCELENKEKQQLQMLDELKEIQSHFETCDARRKRADLQISKLTQHAEDATKQAEQYLTEFQQSEALRQEAEKRREELKVKAQESIRQWKLKHKKLERALEKQSETLDQLAEKNNQILKEKDELKSQLYAALQQIENLRKELNDVLTKRALQEEELHCKEQKLNDVKSHQADLELEVKDSLDTIHRLEGELKKQSKIQSQMKVDKAHLEEEIAELKKSQAKDKAQLLEMQEAIKDLSAIRADLANKLSEEQKARKEVLKNLSDLKTQAKSKDEETATIITQLKLERDVHQRELEDLTSSLQSVKSKHEQNIQELMKHFKKEKSEAESHIRTLKAESLEDKNMAKVQRCQLEKLKSQYDRLTEELTQNENENKKLKLKYQCLKDQLEEKEKHISNEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDAACKTFSRDSMEKLKVFSSGPDINYDPHRWLAESKTKLQWLCEELKERENREKSLQHQLMLCRQQLRNMTENKESELQCLFEQIERQEQLLEEIHREKRDLLEETHRKDEEMESLQDRVNALEMSTRVALDHLESVPEKLSLLEDFKGFRDSRSLSERSDGRYSRYRFSRESLQQRQDDTTYRVPNFKDDRDFVERSHAHGLDQSSSWQDHSHFLSSPRFSHLNYNSGVWRKGQEENRKRENGLDWDDGNADGVKQKDCSELGAFTQRTVAPDSPLIMEDATDLLMDGTSPQSKKEESESKKSKM", "length": 1047, "header": "tr|A0A287BEE1-1|A0A287BEE1_PIG Computationally mapped isoform of Centrosomal protein 128 OS=Sus scrofa OX=9823 GN=CEP128 PE=4 SV=2 CANONICAL=A0A286ZYM9-1" }, "locus": { "chromosome": "7", "start_pos": 103730435, "end_pos": 103346978, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051555.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051555.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054914.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054914.2" } ] } }, { "isoform_ac": "A0A4X1T1I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9/entry#A0A4X1T1I7-1", "sequence": { "sequence": "MAESSSDSDHFCSRDRLSRWAASSLQRETRNRHTADVTEKVNTITSTLQDTSRNLRQVDQMLGQYREYSNGQAGAIENLKESLEQSIGQLRSQRLSRNSGGRRSISVTSLSTSDLDGGTVIESHRFPPTSPLKDYGDQQGIKRNRSRTGVRFVQETDDMGQFHAFHQSLRDLSSEQVRLGDDFNRELVRRSRSDAETKRALEELTEKLNEAQRKEVVSDRVERRLQEIEREMRTEREVVERRQDQLGLISLQLQEALKKQEAKADENEEVMKNKLRQTETEKSKLEQELELSRRLLNQSEGSREILLHQVEELRTQLMKLEGDQKDLQHQVPQISKQQSNHQDKQGDDWRIRRGVEREKENLEKQMSDLRVQLNFSAMAAELEEVKRCMERKDKERVHLAAQVECIERKCILGLAQDSGCKDSEIVTCSLQNPLHV", "length": 436, "header": "tr|A0A4X1T1I7-1|A0A4X1T1I7_PIG Computationally mapped isoform of Centrosomal protein 128 OS=Sus scrofa OX=9823 GN=CEP128 PE=4 SV=1 CANONICAL=A0A286ZYM9-1" }, "locus": { "chromosome": "7", "start_pos": 103740495, "end_pos": 103653188, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002679.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002679.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002612.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002612.4" } ] } }, { "isoform_ac": "I3L554-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9/entry#I3L554-1", "sequence": { "sequence": "MAESSSDSDHFCSRDRLSRWAASSLQRETRNRHTADVTEKVNTITSTLQDTSRNLRQVDQMLGQYREYSNGQAGAIENLKESLEQSIGQLRSQRLSRNSGGRRSISVTSLSTSDLDGGTVIESHRFPPTSPLKDYGDQQGIKRNRSRTGVRFVQETDDMGQFHAFHQSLRDLSSEQVRLGDDFNRELVRRSRSDAETKRALEELTEKLNEAQRKEVVSDRVERRLQEIEREMRTEREVVERRQDQLGLISLQLQEALKKQEAKADENEEVMKNKLRQTETEKSKLEQELELSRRLLNQSEGSREILLHQVEELRTQLMKLEGDQKDLQHQVPQISKQQSNHQDKQGDDWRIRRGVEREKENLEKQMSDLRVQLNFSAMAAELEEVKRCMERKDKERVHLAAQVENLTCELENKEKQQLQMLDELKEIQSHFETCDARRKRADLQISKLTQHAEDATKQAEQYLTEFQQSEALRQEAEKRREELKVKAQESIRQWKLKHKKLERALEKQSETLDQLAEKNNQILKEKDELKSQLYAALQQIENLRKELNDVLTKRALQEEELHCKEQKLNDVKSHQADLELEVKDSLDTIHRLEGELKKQSKIQSQMKVDKAHLEEEIAELKKSQAKDKAQLLEMQEAIKDLSAIRADLANKLSEEQKARKEVLKNLSDLKTQAKSKDEETATIITQLKLERDVHQRELEDLTSSLQSVKSKHEQNIQELMKHFKKEKSEAESHIRTLKAESLEDKNMAKVQRCQLEKLKSQYDRLTEELTQNENENKKLKLKYQCLKDQLEEKEKHISNEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDAACKTFSRDSMEKLKVFSSGPDINYDPHRWLAESKTKLQWLCEELKERENREKSLQHQLMLCRQQLRNMTENKESELQCLFEQIERQEQLLEEIHREKRDLLEETHRKDEEMESLQDRVNALEMSTRVALDHLESVPEKLSLLEDFKGFRDSRSLSERSDGRYSRYRFSRESLQQRQDDTTYRVPNFKDDRDFVERSHAHGLDQSSSWQDHSHFLSSPRFSHLNYNSGVWRKGQEENRKRENGLDWDDGNADGVKQKDCSELGAFTQRTVAPDSPLIMEDATDLLMDGTSPQSKKEESESKKSKM", "length": 1142, "header": "tr|I3L554-1|I3L554_PIG Computationally mapped isoform of Centrosomal protein 128 OS=Sus scrofa OX=9823 GN=CEP128 PE=4 SV=3 CANONICAL=A0A286ZYM9-1" }, "locus": { "chromosome": "7", "start_pos": 103740495, "end_pos": 103346978, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028622.3", "url": "https://www.ensembl.org/id/ENSSSCT00000028622.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019153.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019153.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of transforming growth factor beta receptor signaling pathway", "id": "GO:0017015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017015", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9" } ], "pmid": "" }, { "name": "negative regulation of cilium assembly", "id": "GO:1902018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902018", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9" } ], "pmid": "" }, { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9" } ], "pmid": "" }, { "name": "positive regulation of protein localization", "id": "GO:1903829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903829", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9" } ], "pmid": "" }, { "name": "centriolar subdistal appendage", "id": "GO:0120103", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120103", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9" } ], "pmid": "" }, { "name": "sperm head-tail coupling apparatus", "id": "GO:0120212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120212", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYM9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 297, "end_pos": 299, "annotation": "n_glycosylation_sequon" }, { "start_pos": 374, "end_pos": 376, "annotation": "n_glycosylation_sequon" }, { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" }, { "start_pos": 665, "end_pos": 667, "annotation": "n_glycosylation_sequon" }, { "start_pos": 905, "end_pos": 907, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { 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] }, { "uniprot_canonical_ac": "A0A287A6S6-1", "uniprot_ac": "A0A287A6S6", "uniprot_id": "A0A287A6S6_PIG", "mass": { "chemical_mass": 84731.0, "monoisotopic_mass": 84731.0 }, "refseq": {}, "gene_names": [ { "name": "NOC2L", "type": "recommended", "evidence": [ { "id": "A0A287A6S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ] }, { "name": "PERM1", "type": "recommended", "evidence": [ { "id": "A0A287A6S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ] }, { "name": "NOC2L", "type": "synonym", "evidence": [ { "id": "A0A287A6S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ] } ], "protein_names": [ { "name": "NOC2 like nucleolar associated transcriptional repressor", "type": "synonym", "evidence": [ { "id": "A0A287A6S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], 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"categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAARSRKRRLAELTVDEFLASGFDSESESEPEGAAEGETLAARGTSRSVDEPDRSSLASRRKGRASEHKDQLSRLKDKDPEFYKFLQENDQSLLNFSDSDSSEDEEEQFHSLPDRLEEASEEEEDEEEGDRVPGGPTGKRRDSVPVTLAMVERWKQAAKQHLTPKLFHEVVQAFRAAVSTTQGDQEGAEASKFQVTDSAVFNALVTFCIRDLFGCLEKLLFGKAPKDSSRVLQPSSSPLWGKLRLDVKAYLSAVIQLVACVAEATVAAAVLQHVGSSVLYYLTFPKQCRMLLKRMVALWSTGEETVRVLAFLVLGRVCRHKKDVFLSPVLKQMYITYVRNCKFTSPSALPLISFMQRTLTELLALDSGVAYQHAFLYIRQLAIHLRNAMTTRKKETYQSVYNWQFVHCLHLWCRALSTVGPSEALQPLIYPLSQVIIGCIKLVPTARFYPLRMHCVRALTLLSEGTGTFIPVLPFILEVFQQVDFNRRPGRMSSRPINFAVILKLSKGSLQEKAYRDGLVEQLYDLTLEYLHSQAYSIAFPELALPAVLQLKSFLRECKVANYCRQVRQLLEKVQENAEHIRSLRQSVSFGVSDQRAVDAWEKRTRDEGTPLTKYYSQWRKLRDREIQLEISGKERLEDLNFPEVKRRKVGDRKDEDRAEFKALFDLDSDEDDWAPRFPERGTPGSLQALQRVGGGGEDSSGSSMEEEVSKSEDGSPDTEAGLDAQELWQLAQGPEDELQDLQLSEED", "length": 749, "header": "tr|A0A287A6S6-1|A0A287A6S6_PIG Isoform 1 of NOC2 like nucleolar associated transcriptional repressor OS=Sus scrofa OX=9823 GN=PERM1 PE=3 SV=2 CANONICAL=A0A287A6S6-1" }, "isoforms": [ { "isoform_ac": "A0A287A6S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6/entry#A0A287A6S6-1", "sequence": { "sequence": "MAAARSRKRRLAELTVDEFLASGFDSESESEPEGAAEGETLAARGTSRSVDEPDRSSLASRRKGRASEHKDQLSRLKDKDPEFYKFLQENDQSLLNFSDSDSSEDEEEQFHSLPDRLEEASEEEEDEEEGDRVPGGPTGKRRDSVPVTLAMVERWKQAAKQHLTPKLFHEVVQAFRAAVSTTQGDQEGAEASKFQVTDSAVFNALVTFCIRDLFGCLEKLLFGKAPKDSSRVLQPSSSPLWGKLRLDVKAYLSAVIQLVACVAEATVAAAVLQHVGSSVLYYLTFPKQCRMLLKRMVALWSTGEETVRVLAFLVLGRVCRHKKDVFLSPVLKQMYITYVRNCKFTSPSALPLISFMQRTLTELLALDSGVAYQHAFLYIRQLAIHLRNAMTTRKKETYQSVYNWQFVHCLHLWCRALSTVGPSEALQPLIYPLSQVIIGCIKLVPTARFYPLRMHCVRALTLLSEGTGTFIPVLPFILEVFQQVDFNRRPGRMSSRPINFAVILKLSKGSLQEKAYRDGLVEQLYDLTLEYLHSQAYSIAFPELALPAVLQLKSFLRECKVANYCRQVRQLLEKVQENAEHIRSLRQSVSFGVSDQRAVDAWEKRTRDEGTPLTKYYSQWRKLRDREIQLEISGKERLEDLNFPEVKRRKVGDRKDEDRAEFKALFDLDSDEDDWAPRFPERGTPGSLQALQRVGGGGEDSSGSSMEEEVSKSEDGSPDTEAGLDAQELWQLAQGPEDELQDLQLSEED", "length": 749, "header": "tr|A0A287A6S6-1|A0A287A6S6_PIG Isoform 1 of NOC2 like nucleolar associated transcriptional repressor OS=Sus scrofa OX=9823 GN=PERM1 PE=3 SV=2 CANONICAL=A0A287A6S6-1" }, "locus": { "chromosome": "6", "start_pos": 63320714, "end_pos": 63308342, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038412.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038412.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039650.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039650.2" } ] } }, { "isoform_ac": "A0A8W4FR86-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6/entry#A0A8W4FR86-1", "sequence": { "sequence": "MAAARSRKRRLAELTVDEFLASGFDSESESEPEGAAEGETLAARGTSRSVDEPDRSSLASRRKGRASEHKDQLSRLKDKDPEFYKFLQENDQSLLNFSDSDSSEDEEEQFHSLPDRLEEASEEEEDEEEGDRVPGGPTGKRRDSVPVTLAMVERWKQAAKQHLTPKLFHEVVQAFRAAVSTTQGDQEGAEASKFQVTDSAVFNALVTFCIRDLFGCLEKLLFGKAPKDSSRVLQPSSSPLWGKLRLDVKAYLSAVIQLVACVAEATVAAAVLQHVGSSVLYYLTFPKQCRMLLKRMVALWSTGEETVRVLAFLVLGRVCRHKKDVFLSPVLKQMYITYVRNCKFTSPSALPLISFMQRTLTELLALDSGVAYQHAFLYIRQLAIHLRNAMTTRKKETYQSVYNWQFVHCLHLWCRALSTVGPSEALQPLIYPLSQVIIGCIKLVPTARFYPLRMHCVRALTLLSEGTGTFIPVLPFILEDGLVEQLYDLTLEYLHSQAYSIAFPELALPAVLQLKSFLRECKVANYCRQVRQLLEKVQENAEHIRSLRQSVSFGVSDQRAVDAWEKRTRDEGTPLTKYYSQWRKLRDREIQLEISGKERLEDLNFPEVKRRKVGDRKDEDRAEFKALFDLDSDEDDWAPRFPERGTPGSLQALQRVVAAVAEDSSGSSMEEEVSKSEDGSPDTEAGLDAQELWQLAQGPEDELQDLQLSEED", "length": 712, "header": "tr|A0A8W4FR86-1|A0A287A6S6_PIG Computationally mapped isoform of NOC2 like nucleolar associated transcriptional repressor OS=Sus scrofa OX=9823 GN=PERM1 PE=3 SV=1 CANONICAL=A0A287A6S6-1" }, "locus": { "chromosome": "6", "start_pos": 63320714, "end_pos": 63308342, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099124.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099124.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081066.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081066.1" } ] } }, { "isoform_ac": "I3L9F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6/entry#I3L9F2-1", "sequence": { "sequence": "MAAARSRKRRLAELTVDEFLASGFDSESESEPEGAAEGETLAARGTSRSVDEPDRSSLASRRKGRASEHKDQLSRLKDKDPEFYKFLQENDQSLLNFSDSDSSEDEEEQFHSLPDRLEEASEEEEDEEEGDRVPGGPTGKRRDSVPVTLAMVERWKQAAKHLTPKLFHEVVQAFRAAVSTTQGDQEGAEASKFQVTDSAVFNALVTFCIRDLFGCLEKLLFGKAPKDSSRVLQPSSSPLWGKLRLDVKAYLSAVIQLVACVAEATVAAAVLQHVGSSVLYYLTFPKQCRMLLKRMVALWSTGEETVRVLAFLVLGRVCRHKKDVFLSPVLKQMYITYVRNCKFTSPSALPLISFMQRTLTELLALDSGVAYQHAFLYIRQLAIHLRNAMTTRKKETYQSVYNWQFVHCLHLWCRALSTVGPSEALQPLIYPLSQVIIGCIKLVPTARFYPLRMHCVRALTLLSEGTGTFIPVLPFILEVFQQVDFNRRPGRMSSRPINFAVILKLSKGSLQEKAYRDGLVEQLYDLTLEYLHSQAYSIAFPELALPAVLQLKSFLRECKVANYCRQVRQLLEKVQENAEHIRSLRQSVSFGVSDQRAVDAWEKRTRDEGTPLTKYYSQWRKLRDREIQLEISGKERLEDLNFPEVKRRKVGDRKDEDRAEFKALFDLDSDEDDWAPRFPERGTPGSLQALQRVVAAVAEDSSGSSMEEEVSKSEDGSPDTEAGLDAQELWQLAQGPEDELQDLQLSEED", "length": 749, "header": "tr|I3L9F2-1|A0A287A6S6_PIG Computationally mapped isoform of NOC2 like nucleolar associated transcriptional repressor OS=Sus scrofa OX=9823 GN=PERM1 PE=3 SV=4 CANONICAL=A0A287A6S6-1" }, "locus": { "chromosome": "6", "start_pos": 63320714, "end_pos": 63308342, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028244.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028244.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020664.4", "url": "https://www.ensembl.org/id/ENSSSCP00000020664.4" } ] } }, { "isoform_ac": "I3LI86-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6/entry#I3LI86-1", "sequence": { "sequence": "MAAARSRKRRLAELTVDEFLASGFDSESESEPEGAAEGETLAARGTSRSVDEPDRSSLASRRKGRASEHKDQLSRLKDKDPEFYKFLQENDQSLLNFSDSDSSEDEEEQFHSLPDRLEEASEEEEDEEEGDRVPGGPTGKRRDSVPVTLAMVERWKQAAKQHLTPKLFHEVVQAFRAAVSTTQGDQEGAEASKFQVTDSAVFNALVTFCIRDLFGCLEKLLFGKAPKDSSRVLQPSSSPLWGKLRLDVKAYLSAVIQRMVALWSTGEETVRVLAFLVLGRVCRHKKDVFLSPVLKQMYITYVRNCKFTSPSALPLISFMQRTLTELLALDSGVAYQHAFLYIRQLAIHLRNAMTTRKKETYQSVYNWQFVHCLHLWCRALSTVGPSEALQPLIYPLSQVIIGCIKLVPTARFYPLRMHCVRALTLLSEGTGTFIPVLPFILEVFQQVDFNRRPGRMSSRPINFAVILKLSKGSLQEKAYRDGLVEQLYDLTLEYLHSQAYSIAFPELALPAVLQLKSFLRECKVANYCRQVRQLLEKVQENAEHIRSLRQSVSFGVSDQRAVDAWEKRTRDEGTPLTKYYSQWRKLRDREIQLEISGKERLEDLNFPEVKRRKVGDRKDEDRAEFKALFDLDSDEDDWAPRFPERGTPGSLQALQRVVAAVAEDSSGSSMEEEVSKSEDGSPDTEAGLDAQELWQLAQGPEDELQDLQLSEED", "length": 713, "header": "tr|I3LI86-1|A0A287A6S6_PIG Computationally mapped isoform of NOC2 like nucleolar associated transcriptional repressor OS=Sus scrofa OX=9823 GN=PERM1 PE=3 SV=3 CANONICAL=A0A287A6S6-1" }, "locus": { "chromosome": "6", "start_pos": 63320714, "end_pos": 63308342, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024617.3", "url": "https://www.ensembl.org/id/ENSSSCT00000024617.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023786.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023786.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L9F2", "url": "https://www.uniprot.org/uniprotkb/I3L9F2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6804756", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "resource": "Reactome", "description": "Regulation of TP53 Activity through Phosphorylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ], "pmid": "" }, { "name": "transcription initiation-coupled chromatin remodeling", "id": "GO:0045815", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045815", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ], "pmid": "" }, { "name": "cellular response to UV", "id": "GO:0034644", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034644", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ], "pmid": "" }, { "name": "negative regulation of intrinsic apoptotic signaling pathway", "id": "GO:2001243", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001243", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ], "pmid": "" }, { "name": "negative regulation of B cell apoptotic process", "id": "GO:0002903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002903", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ], "pmid": "" }, { "name": "ribosomal large subunit biogenesis", "id": "GO:0042273", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042273", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ], "pmid": "" }, { "name": "Noc1p-Noc2p complex", "id": "GO:0030690", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030690", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ], "pmid": "" }, { "name": "Noc2p-Noc3p complex", "id": "GO:0030691", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030691", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S6", "url": 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] } ], "function": [ { "annotation": "Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex required for mitotic progression and cytokinesis. 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"database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18449", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18449", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519287", "url": "https://www.ncbi.nlm.nih.gov/gene/100519287", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": 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"categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020936085", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936085", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ACD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLU5", "url": "https://www.uniprot.org/uniprotkb/A0A287BLU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W060", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W060", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W060-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W060-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W520", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W520", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W520-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W520-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W665", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W665", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W665-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W665-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU75", "url": "https://www.uniprot.org/uniprotkb/F1RU75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU75-1", "url": "https://www.uniprot.org/uniprotkb/F1RU75-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDHLHRGESVAAILRNRSLVEEEDQHMKLSLGSSEMGLSSHLQSSKAGTTRIFTSNTHSSVVLQGFDQLRLEGLLCDVTLMPGDTDDAFPVHRVMMASASDYFKAMFTGGMKEQDLMCIKLHGVSKVGLRKIIDFIYTAKLSLNMDNLQDTLEAASFLQILPVLDFCKVFLISGVTLDNCVEVGRIANTYNLTEVDKYVNSFVLKNFPALLSTGEFLKLPFERLAFVLSSNSLKHCTELELFKATCRWLRLEEPRMDFAAKLMKNIRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQSDRTAIRSDTTHLVTLGGVLRQQLVVSKELRMYDEKAHEWKSLAPMDAPRYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKGYLYAVGGRNAAGELPTVECYNPRTNEWTYVAKMSEPHYGHAGTVYGGVMYISGGITHDTFQKELMCFDPDTDKWIQKAPMTTVRGLHCMCTVGERLYVIGGNHFRGTSDYDDVLSCEYYSPILDQWTPIAAMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPDKDEWHKVFDLPESLGGIRACTLTVFPPEETTPSPSRESPLSAP", "length": 639, "header": "tr|A0A287ACD9-1|A0A287ACD9_PIG Isoform 1 of Kelch like family member 13 OS=Sus scrofa OX=9823 GN=KLHL13 PE=4 SV=1 CANONICAL=A0A287ACD9-1" }, "isoforms": [ { "isoform_ac": "A0A287ACD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9/entry#A0A287ACD9-1", "sequence": { "sequence": "MDHLHRGESVAAILRNRSLVEEEDQHMKLSLGSSEMGLSSHLQSSKAGTTRIFTSNTHSSVVLQGFDQLRLEGLLCDVTLMPGDTDDAFPVHRVMMASASDYFKAMFTGGMKEQDLMCIKLHGVSKVGLRKIIDFIYTAKLSLNMDNLQDTLEAASFLQILPVLDFCKVFLISGVTLDNCVEVGRIANTYNLTEVDKYVNSFVLKNFPALLSTGEFLKLPFERLAFVLSSNSLKHCTELELFKATCRWLRLEEPRMDFAAKLMKNIRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQSDRTAIRSDTTHLVTLGGVLRQQLVVSKELRMYDEKAHEWKSLAPMDAPRYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKGYLYAVGGRNAAGELPTVECYNPRTNEWTYVAKMSEPHYGHAGTVYGGVMYISGGITHDTFQKELMCFDPDTDKWIQKAPMTTVRGLHCMCTVGERLYVIGGNHFRGTSDYDDVLSCEYYSPILDQWTPIAAMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPDKDEWHKVFDLPESLGGIRACTLTVFPPEETTPSPSRESPLSAP", "length": 639, "header": "tr|A0A287ACD9-1|A0A287ACD9_PIG Isoform 1 of Kelch like family member 13 OS=Sus scrofa OX=9823 GN=KLHL13 PE=4 SV=1 CANONICAL=A0A287ACD9-1" }, "locus": { "chromosome": "X", "start_pos": 96669751, "end_pos": 96545254, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049502.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049502.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041476.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041476.1" } ] } }, { "isoform_ac": "A0A287BLU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9/entry#A0A287BLU5-1", "sequence": { "sequence": "MDHLHRGESVAAILRNRRRRQLSLKQADFKDMFKKSTSGSLVEEEDQHMKLSLGSSEMGLSSHLQSSKAGTTRIFTSNTHSSVVLQGFDQLRLEGLLCDVTLMPGDTDDAFPVHRVMMASASDYFKAMFTGGMKEQDLMCIKLHGVSKVGLRKIIDFIYTAKLSLNMDNLQDTLEAASFLQILPVLDFCKVFLISGVTLDNCVEVGRIANTYNLTEVDKYVNSFVLKNFPALLSTGEFLKLPFERLAFVLSSNSLKHCTELELFKATCRWLRLEEPRMDFAAKLMKNIRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQSDRTAIRSDTTHLVTLGGVLRQQLVVSKELRMYDEKAHEWKSLAPMDAPRYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKGYLYAVGGRNAAGELPTVECYNPRTNEWTYVAKMSEPHYGHAGTVYGGVMYISGGITHDTFQKELMCFDPDTDKWIQKAPMTTVRGLHCMCTVGERLYVIGGNHFRGTSDYDDVLSCEYYSPILDQWTPIAAMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPDKDEWHKVFDLPESLGGIRACTLTVFPPEETTPSPSRESPLSAP", "length": 661, "header": "tr|A0A287BLU5-1|A0A287BLU5_PIG Computationally mapped isoform of Kelch like family member 13 OS=Sus scrofa OX=9823 GN=KLHL13 PE=4 SV=1 CANONICAL=A0A287ACD9-1" }, "locus": { "chromosome": "X", "start_pos": 96669751, "end_pos": 96545254, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065683.2", "url": "https://www.ensembl.org/id/ENSSSCT00000065683.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057479.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057479.1" } ] } }, { "isoform_ac": "A0A4X1W060-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9/entry#A0A4X1W060-1", "sequence": { "sequence": "MDHLHRGESVAAILRNRQISWCSYLSHPTSALKMNTLFPFGLLLLSLRRRRQLSLKQADFKDMFKKSTSGSLVEEEDQHMKLSLGSSEMGLSSHLQSSKAGTTRIFTSNTHSSVVLQGFDQLRLEGLLCDVTLMPGDTDDAFPVHRVMMASASDYFKAMFTGGMKEQDLMCIKLHGVSKVGLRKIIDFIYTAKLSLNMDNLQDTLEAASFLQILPVLDFCKVFLISGVTLDNCVEVGRIANTYNLTEVDKYVNSFVLKNFPALLSTGEFLKLPFERLAFVLSSNSLKHCTELELFKATCRWLRLEEPRMDFAAKLMKNIRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQSDRTAIRSDTTHLVTLGGVLRQQLVVSKELRMYDEKAHEWKSLAPMDAPRYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKGYLYAVGGRNAAGELPTVECYNPRTNEWTYVAKMSEPHYGHAGTVYGGVMYISGGITHDTFQKELMCFDPDTDKWIQKAPMTTVRGLHCMCTVGERLYVIGGNHFRGTSDYDDVLSCEYYSPILDQWTPIAAMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPDKDEWHKVFDLPESLGGIRACTLTVFPPEETTPSPSRESPLSAP", "length": 692, "header": "tr|A0A4X1W060-1|A0A287ACD9_PIG Computationally mapped isoform of Kelch like family member 13 OS=Sus scrofa OX=9823 GN=KLHL13 PE=4 SV=1 CANONICAL=A0A287ACD9-1" }, "locus": { "chromosome": "X", "start_pos": 96669751, "end_pos": 96545254, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046277.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046277.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043557.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043557.1" } ] } }, { "isoform_ac": "A0A4X1W520-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9/entry#A0A4X1W520-1", "sequence": { "sequence": "MLRFISHLYCCSSKEECSEDDKCILSRSLVEEEDQHMKLSLGSSEMGLSSHLQSSKAGTTRIFTSNTHSSVVLQGFDQLRLEGLLCDVTLMPGDTDDAFPVHRVMMASASDYFKAMFTGGMKEQDLMCIKLHGVSKVGLRKIIDFIYTAKLSLNMDNLQDTLEAASFLQILPVLDFCKVFLISGVTLDNCVEVGRIANTYNLTEVDKYVNSFVLKNFPALLSTGEFLKLPFERLAFVLSSNSLKHCTELELFKATCRWLRLEEPRMDFAAKLMKNIRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQSDRTAIRSDTTHLVTLGGVLRQQLVVSKELRMYDEKAHEWKSLAPMDAPRYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKGYLYAVGGRNAAGELPTVECYNPRTNEWTYVAKMSEPHYGHAGTVYGGVMYISGGITHDTFQKELMCFDPDTDKWIQKAPMTTVRGLHCMCTVGERLYVIGGNHFRGTSDYDDVLSCEYYSPILDQWTPIAAMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPDKDEWHKVFDLPESLGGIRACTLTVFPPEETTPSPSRESPLSAP", "length": 649, "header": "tr|A0A4X1W520-1|A0A287ACD9_PIG Computationally mapped isoform of Kelch like family member 13 OS=Sus scrofa OX=9823 GN=KLHL13 PE=4 SV=1 CANONICAL=A0A287ACD9-1" }, "locus": { "chromosome": "X", "start_pos": 96611799, "end_pos": 96545254, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047170.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047170.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057487.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057487.2" } ] } }, { "isoform_ac": "A0A4X1W665-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9/entry#A0A4X1W665-1", "sequence": { "sequence": "MMRVQTLREKWAYWRRRQLSLKQADFKDMFKKSTSGSLVEEEDQHMKLSLGSSEMGLSSHLQSSKAGTTRIFTSNTHSSVVLQGFDQLRLEGLLCDVTLMPGDTDDAFPVHRVMMASASDYFKAMFTGGMKEQDLMCIKLHGVSKVGLRKIIDFIYTAKLSLNMDNLQDTLEAASFLQILPVLDFCKVFLISGVTLDNCVEVGRIANTYNLTEVDKYVNSFVLKNFPALLSTGEFLKLPFERLAFVLSSNSLKHCTELELFKATCRWLRLEEPRMDFAAKLMKNIRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQSDRTAIRSDTTHLVTLGGVLRQQLVVSKELRMYDEKAHEWKSLAPMDAPRYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKGYLYAVGGRNAAGELPTVECYNPRTNEWTYVAKMSEPHYGHAGTVYGGVMYISGGITHDTFQKELMCFDPDTDKWIQKAPMTTVRGLHCMCTVGERLYVIGGNHFRGTSDYDDVLSCEYYSPILDQWTPIAAMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPDKDEWHKVFDLPESLGGIRACTLTVFPPEETTPSPSRESPLSAP", "length": 658, "header": "tr|A0A4X1W665-1|A0A287ACD9_PIG Computationally mapped isoform of Kelch like family member 13 OS=Sus scrofa OX=9823 GN=KLHL13 PE=4 SV=1 CANONICAL=A0A287ACD9-1" }, "locus": { "chromosome": "X", "start_pos": 96624221, "end_pos": 96545254, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042878.1", "url": "https://www.ensembl.org/id/ENSSSCT00000042878.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041534.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041534.1" } ] } }, { "isoform_ac": "F1RU75-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9/entry#F1RU75-1", "sequence": { "sequence": "MPLKWKTSSPAIWKFPVPVLKTSRSTPLSPAYISLVEEEDQHMKLSLGSSEMGLSSHLQSSKAGTTRIFTSNTHSSVVLQGFDQLRLEGLLCDVTLMPGDTDDAFPVHRVMMASASDYFKAMFTGGMKEQDLMCIKLHGVSKVGLRKIIDFIYTAKLSLNMDNLQDTLEAASFLQILPVLDFCKVFLISGVTLDNCVEVGRIANTYNLTEVDKYVNSFVLKNFPALLSTGEFLKLPFERLAFVLSSNSLKHCTELELFKATCRWLRLEEPRMDFAAKLMKNIRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQSDRTAIRSDTTHLVTLGGVLRQQLVVSKELRMYDEKAHEWKSLAPMDAPRYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKGYLYAVGGRNAAGELPTVECYNPRTNEWTYVAKMSEPHYGHAGTVYGGVMYISGGITHDTFQKELMCFDPDTDKWIQKAPMTTVRGLHCMCTVGERLYVIGGNHFRGTSDYDDVLSCEYYSPILDQWTPIAAMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPDKDEWHKVFDLPESLGGIRACTLTVFPPEETTPSPSRESPLSAP", "length": 655, "header": "tr|F1RU75-1|A0A287ACD9_PIG Computationally mapped isoform of Kelch like family member 13 OS=Sus scrofa OX=9823 GN=KLHL13 PE=4 SV=2 CANONICAL=A0A287ACD9-1" }, "locus": { "chromosome": "X", "start_pos": 96611187, "end_pos": 96545254, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013817.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013817.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013436.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013436.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W060", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W060" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519287", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519287", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IP02-1", "protein_name": "Kelch-like protein 13 isoform X4", "gene_name": "klhl13", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPLKWKSGSPVSWKFPVPVLKTSRSSPLSPAYISLVEDDDAQMMKVSLGCSEMGLSSHLQASKTGNTRFFTSNTHSSVVLQGFDQLRIEGLLCDVTLVAGDGDEAFPVHRAMMASSSDYFKAMFTGGMKEQDLMCIKLHGVNRIGLKKIIDFIYTAKLSLNMENLQDTLEAASFLQILPVLDFCKVFLISGVSLDNCVEVGRIANTYNLTEVDKYVNNFILKNFPSLLGTGEFVKLPFERLAFVLSSNSLKHCSELDLFKSACRWLRYEEGRMEYAAKLMRNIRFPLMSPTELINHVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQSERTAIRSDNTHLVTLGGVLRQQLVVSKELRLFDEKAHEWKALAPMDAPRYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRYDPRYNKWIQVACLNEKRTFFHLSALKGYLYAVGGRNAAGELATVECYNPRTNEWTYVAKMSEPHYGHAGTVYGGYMYISGGITHDTFQKELMCFDPDADKWTQKAPMTTVRGLHCMCTVGDRLYVIGGNHFRGTSDYDDVLSCEYYSPALDLWTPIAAMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPEKDEWHKVFDLPESLGGIRACTLTVFPPEDLSLAGSPSRESPLSAP", "length": 658 }, "evidence": [ { "id": "A0A287ACD9", "url": "https://omabrowser.org/oma/group/A0A287ACD9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8I6A140-1", "protein_name": "Kelch-like family member 13", "gene_name": "Klhl13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDILHRGELVAAILRNRSLVEEEDQHLKLCLGSEMGLSSHLQSCKAGSTRIFTSNSHSSVVLQGFDQLRLDGLLCDVTLMPGDTDDAYPVHRVMMASASDYFKAMFTGGMKEQELMCIKLHGVSRVGLRKIIDFIYTAKLSLNMDTLQDTLEAASFLQILPVLDFCKVFLISGVTLDNCVEVGRIANTYHLTEVDKYVNSFVLKNFAALLSTGEFLKLPFERLAFVLSSNSLKRCTELELFKATCRWLRLEEPRMDVAAKLMKNIRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASNYQMMPFMQPVMQSDRTAIRSDTTHLVTLGGVLRQQLVVSKELRMYDEKTHEWKSLAPMDAPRYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWIQVASLNEKRTFFHLSALKGFLYAVGGRNAAGELPTVECYNPRTNEWTYVAKMNEPHYGHAGTVYGGVMYISGGITHDTFQKELMCFDPDTDKWIQKAPMTTVRGLHCMCTVGDRLYVIGGNHFRGTSDYDDVLSCEYYSPILDQWTPIASMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPEKNEWHKVFDLPESLGGIRACTLTVYPPEENTPSPSRESPLSGP", "length": 638 }, "evidence": [ { "id": "A0A287ACD9", "url": "https://omabrowser.org/oma/group/A0A287ACD9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6QQY2-1", "protein_name": "Kelch-like protein 13", "gene_name": "KLHL13", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPLKWKTSSPAIWKFPVPVLKTSRSTPLSPAYISLVEEEDQHMKLSLGSSEMGLSSHLQSSKAGTTRIFTSNTHSSVVLQGFDQLRLEGLLCDVTLMPGDTDDAFPVHRVMMASASDYFKAMFTGGMKEQDLMCIKLHGVSKVGLRKIIDFIYTAKLSLNMDNLQDTLEAASFLQILPVLDFCKVFLISGVTLDNCVEVGRIANTYNLTEVDKYVNSFVLKNFPALLSTGEFLKLPFERLAFVLSSNSLKHCTELELFKATCRWLRLEEPRMDFAAKLMKNIRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQSDRTAIRSDTTHLVTLGGVLRQQLVVSKELRMYDEKAHEWKSLAPMDAPRYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKGYLYAVGGRNAAGELPTVECYNPRTNEWTYVAKMSEPHYGHAGTVYGGVMYISGGITHDTFQKELMCFDPDTDKWIQKAPMTTVRGLHCMCTVGERLYVIGGNHFRGTSDYDDVLSCEYYSPILDQWTPIAAMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPDKDEWHKVFDLPESLGGIRACTLTVFPPEETTPSPSRESPLSAP", "length": 655 }, "evidence": [ { "id": "A0A287ACD9", "url": "https://omabrowser.org/oma/group/A0A287ACD9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q80TF4-1", "protein_name": "Kelch-like protein 13", "gene_name": "Klhl13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPLKWKTSSPAIWKFPVPVLKTSRSTPLSPAYISLVEEEDQHLKLCLGSEMGLSSHLQSCKAGSTRIFTSNSHSSVVLQGFDQLRLDGLLCDVTLMPGDTDDAYPVHRVMMASASDYFKAMFTGGMKEQELMCIKLHGVSRVGLRKIIDFIYTAKLSLNMDTLQDTLEAASFLQILPVLDFCKVFLISGVTLDNCVEVGRIANTYHLTEVDKYVNSFVLKNFAALLSTGEFLKLPFERLAFVLSSNSLKRCTELDLFKATCRWLRLEEPRMDVAAKLMKNIRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASNYQMMPFMQPVMQSDRTAIRSDTTRLVTLGGVLRQQLVVSKELRMYDEKTHEWKSLAPMDAPRYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWIQVASLNEKRTFFHLSALKGFLYAVGGRNAAGELPTVECYNPRTNEWTYVAKMNEPHYGHAGTVYGGVMYISGGITHDTFQKELMCFDPDTDKWTQKAPMTTVRGLHCMCTVGDRLYVIGGNHFRGTSDYDDVLSCEYYSPILDQWTPIASMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPEKNEWHKVFDLPESLGGIRACTLTVYPPEEATPSPSRESPLSGP", "length": 654 }, "evidence": [ { "id": "A0A287ACD9", "url": "https://omabrowser.org/oma/group/A0A287ACD9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9P2N7-1", "protein_name": "Kelch-like protein 13", "gene_name": "KLHL13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLKWKTSSPAIWKFPVPVLKTSRSTPLSPAYISLVEEEDQHMKLSLGGSEMGLSSHLQSSKAGPTRIFTSNTHSSVVLQGFDQLRLEGLLCDVTLMPGDTDDAFPVHRVMMASASDYFKAMFTGGMKEQDLMCIKLHGVSKVGLRKIIDFIYTAKLSLNMDNLQDTLEAASFLQILPVLDFCKVFLISGVTLDNCVEVGRIANTYNLTEVDKYVNSFVLKNFPALLSTGEFLKLPFERLAFVLSSNSLKHCTELELFKATCRWLRLEEPRMDFAAKLMKNIRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQSDRTAIRSDTTHLVTLGGVLRQQLVVSKELRMYDEKAHEWKSLAPMDAPRYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKGYLYAVGGRNAAGELPTVECYNPRTNEWTYVAKMSEPHYGHAGTVYGGVMYISGGITHDTFQKELMCFDPDTDKWIQKAPMTTVRGLHCMCTVGERLYVIGGNHFRGTSDYDDVLSCEYYSPILDQWTPIAAMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPDKDEWHKVFDLPESLGGIRACTLTVFPPEETTPSPSRESPLSAP", "length": 655 }, "evidence": [ { "id": "A0A287ACD9", "url": "https://omabrowser.org/oma/group/A0A287ACD9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9" } ], "pmid": "" }, { "name": "Cul3-RING ubiquitin ligase complex", "id": "GO:0031463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031463", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9" } ], "pmid": "" }, { "name": "regulation of cytokinesis", "id": "GO:0032465", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032465", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9" } ], "pmid": "" }, { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" }, { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ACD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ACD9" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 145, "start_aa": "Cys", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 }, { "start_pos": 191, "end_pos": 193 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A5T5-1", "uniprot_ac": "A0A287A5T5", "uniprot_id": "A0A287A5T5_PIG", "mass": { "chemical_mass": 46219.0, "monoisotopic_mass": 46219.0 }, "refseq": {}, "gene_names": [ { "name": "PTAR1", "type": "recommended", "evidence": [ { "id": "A0A287A5T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A5T5" } ] } ], "protein_names": [ { "name": "Protein prenyltransferase alpha subunit repeat containing 1", "type": "synonym", "evidence": [ { "id": "A0A287A5T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A5T5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A5T5", "url": "https://www.uniprot.org/uniprotkb/A0A287A5T5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PTAR1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5T5", "locus": { "chromosome": "1", "start_pos": 223032879, "end_pos": 223089663, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005252", "url": "https://www.ensembl.org/id/ENSSSCG00000005252" } ] } } ], "crossref": [ { "id": "A0A287A5T5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A5T5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005252", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005252", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153489", "url": "https://www.ncbi.nlm.nih.gov/gene/100153489", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153489", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153489", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CCNTEQR", "url": "https://omabrowser.org/oma/group/CCNTEQR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJD0", "url": "https://www.orthodb.org/?gene=F1SJD0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11129", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11129", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11129:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11129:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01239", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01239", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A5T5", "url": "https://www.uniprot.org/uniprotkb/A0A287A5T5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5T5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8V6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8V6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8M6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8M6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8M6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8M6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJD0", "url": "https://www.uniprot.org/uniprotkb/F1SJD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJD0-1", "url": "https://www.uniprot.org/uniprotkb/F1SJD0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAETSEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHNKLLLYRTRKQWLNKDELIDVTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVLRQLIQETSLPSFMTKGNLGIIPAERTQQLIREEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVTDGSISEQNPLRSEPGIVLPKGEEAVASAEESRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHIFYLQHHLNSPHTSQAMEVDGLSDSSKQGYSQETKRLKRTPAPDSLGLEMEHRFIDQVLSTCRNVEQARFANAYRKWLVTLSQ", "length": 401, "header": "tr|A0A287A5T5-1|A0A287A5T5_PIG Isoform 1 of Protein prenyltransferase alpha subunit repeat containing 1 OS=Sus scrofa OX=9823 GN=PTAR1 PE=1 SV=1 CANONICAL=A0A287A5T5-1" }, "isoforms": [ { "isoform_ac": "A0A287A5T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5T5/entry#A0A287A5T5-1", "sequence": { "sequence": "MAETSEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHNKLLLYRTRKQWLNKDELIDVTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVLRQLIQETSLPSFMTKGNLGIIPAERTQQLIREEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVTDGSISEQNPLRSEPGIVLPKGEEAVASAEESRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHIFYLQHHLNSPHTSQAMEVDGLSDSSKQGYSQETKRLKRTPAPDSLGLEMEHRFIDQVLSTCRNVEQARFANAYRKWLVTLSQ", "length": 401, "header": "tr|A0A287A5T5-1|A0A287A5T5_PIG Isoform 1 of Protein prenyltransferase alpha subunit repeat containing 1 OS=Sus scrofa OX=9823 GN=PTAR1 PE=1 SV=1 CANONICAL=A0A287A5T5-1" }, "locus": { "chromosome": "1", "start_pos": 223089550, "end_pos": 223037620, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042045.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042045.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039226.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039226.1" } ] } }, { "isoform_ac": "A0A5G2Q8V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5T5/entry#A0A5G2Q8V6-1", "sequence": { "sequence": "MAETSEEVAVLVQRVVKDITNAFRRNPHIKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVLRQLIQETSLPSFMTKGNLGIIPAERTQQLIREEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVTDGSISEQNPLRSEPGIVLPKGEEAVASAEESRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHIFYLQHHLNSRFPHSMTQLSPADSPRGTLSDLHLIPAGPHTSQAMEVDGLSDSSKQGYSQETKRLKRTPAPDSLGLEMEHRFIDQVLSTCRNVEQARFANAYRKWLVTLSQ", "length": 350, "header": "tr|A0A5G2Q8V6-1|A0A287A5T5_PIG Computationally mapped isoform of Protein prenyltransferase alpha subunit repeat containing 1 OS=Sus scrofa OX=9823 GN=PTAR1 PE=1 SV=1 CANONICAL=A0A287A5T5-1" }, "locus": { "chromosome": "1", "start_pos": 223089550, "end_pos": 223037620, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089268.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089268.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060341.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060341.1" } ] } }, { "isoform_ac": "A0A5G2R8M6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5T5/entry#A0A5G2R8M6-1", "sequence": { "sequence": "MAETSEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHNKLLLYRTRKQWLNKDELIDVTCTLLLLNPDFTTAWNVRRWVLRQLIQETSLPSFMTKGNLGIIPAERTQQLIREEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVTDGSISEQNPLRSEPGIVLPKGEEAVASAEESRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHIFYLQHHLNSRFPHSMTQLSPADSPRGTLSDLHLIPAGPHTSQAMEVDGLSDSSKQGYSQETKRLKRTPAPDSLGLEMEHRFIDQVLSTCRNVEQARFANAYRKWLVTLSQ", "length": 394, "header": "tr|A0A5G2R8M6-1|A0A287A5T5_PIG Computationally mapped isoform of Protein prenyltransferase alpha subunit repeat containing 1 OS=Sus scrofa OX=9823 GN=PTAR1 PE=1 SV=1 CANONICAL=A0A287A5T5-1" }, "locus": { "chromosome": "1", "start_pos": 223089550, "end_pos": 223037620, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100521.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100521.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080793.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080793.1" } ] } }, { "isoform_ac": "F1SJD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5T5/entry#F1SJD0-1", "sequence": { "sequence": "MAETSEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHNKLLLYRTRKQWLNKDELIDVTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVLRQLIQETSLPSFMTKGNLGIIPAERTQQLIREEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVTDGSISEQNPLRSEPGIVLPKGEEAVASAEESRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHIFYLQHHLNSRFPHSMTQLSPADSPRGTLSDLHLIPAGPHTSQAMEVDGLSDSSKQGYSQETKRLKRTPAPDSLGLEMEHRFIDQVLSTCRNVEQARFANAYRKWLVTLSQ", "length": 429, "header": "tr|F1SJD0-1|A0A287A5T5_PIG Computationally mapped isoform of Protein prenyltransferase alpha subunit repeat containing 1 OS=Sus scrofa OX=9823 GN=PTAR1 PE=1 SV=3 CANONICAL=A0A287A5T5-1" }, "locus": { "chromosome": "1", "start_pos": 223089550, "end_pos": 223037620, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005787.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005787.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005644.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005644.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8V6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8V6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153489", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153489", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2U8C8-1", "protein_name": "Protein prenyltransferase alpha subunit repeat containing 1", "gene_name": "PTAR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAESPEEVAVLVQRVVKDIRNAFKRNPDIDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHNKLLLYRQRKQWLNKDELIDTTCTLLLLNPDFTTAWNVRKELILSGTLSPLKDLHLGKLALTKFPKSPETWIHRRWVLQQLIQENSLPVLVNKGNLGAAPVERIHRLVQEEMDVCSEAAGRYPSNYNAWSHRIWVLQNVGKLTIKILLDELSSTKYWVSMHVSDHSGFHYRQFLLKSLIGRTVNDDNTLVQNQMGNEQNSSLQTEEECEGAEAVCVEEQSVDIPRYLEEELDFCTDLIDTYPGHETLWCHRRRVFYLQHHLINKLPLLSVVVSSVDSSDETLHNSHPNPATSHMAQAMDVDGLNESSSKQGYTQETKRLKRAPMQDSLGPEVEYRFIEKVLSTCRDVDQARFATAYRKWLVTFLGQ", "length": 435 }, "evidence": [ { "id": "A0A287A5T5", "url": "https://omabrowser.org/oma/group/A0A287A5T5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494B9V8-1", "protein_name": "Protein prenyltransferase alpha subunit repeat containing 1", "gene_name": "Ptar1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAESNEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHNKLLLYRTRKQWLNKDELADVTCTLLLLNPDFTTAWNVRKELILSGTLSPIKDLHLGKLALTKFPKSPETWIHRRWVLQQLSQETFLPSSVAKGSLGAVPAERTQRIIQEEMEVCSEAAGRYPSNYNAWSHRIWVLQNVAKLDLKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTTIDSAVPQHNSLKSEPKDEAAAASTEEPSVNLPQLLEEEVEFCTDLIDSYPGHETLWCHRRHVFYLQHHLNGRLPPNLTHLSPADCPGGALNDSLQIPTSPQLSQAMEVDGLSDSSKQGYSQETKRLKRTPAPDSLGLEMEHRFIDQVLSTCRNVEQVRYANAYRKWLVTLSQ", "length": 424 }, "evidence": [ { "id": "A0A287A5T5", "url": "https://omabrowser.org/oma/group/A0A287A5T5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KPW7-1", "protein_name": "Protein prenyltransferase alpha subunit repeat-containing protein 1", "gene_name": "ptar1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAESEEEVDVLVQRVVKDITNAFKRNPNIDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHNKLLLYRQRKQWLDREALVDITSTLLLLNPDFTTAWNVRKELLQCGVLNPEKDLYLGKLALSKHPKSPETWIHRRWVLQRLQKECSPSGQELKDSAESRRQCERLQRALQEEMRVCAEAAGRYPSNYNAWSHRIWVLQNMAKGNLKVLHDELSSTRLWVSMHVSDHSGFHYRQHLLKALAKELSPAAEKDVHTSQQPNGENTATASDDNHHKDVMPRLFHEEIQLCTDLIESYPGHETLWCHRRHVFYLWHQWRREHMQGAGSQSPALTHTDVLLSKELCDNNSISQAMDIDCVLDGSKHGSYTQDTKRLKRGPLLLQPGFPSEHTFISRILTGCRNPEQSRFAIAYRKWLDSVIGQ", "length": 426 }, "evidence": [ { "id": "A0A287A5T5", "url": "https://omabrowser.org/oma/group/A0A287A5T5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZWG9-1", "protein_name": "Protein prenyltransferase alpha subunit repeat containing 1", "gene_name": "Ptar1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VERPALPGSSGAGRGRALVHSPRPPGAHARFRQAERGWDCRARPAGRYQDAWRVSVGERPRRATSERGVFALPGASLELWQLFSPLPSAGVRLPGGPLLWGSVPWRRLSGCIQDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHNKLLLYRTRKQWLHKDELIDVTCTLLLLNPDFTTAWNVRKELILSGTLSPVKDLHLGKLALTKFPKSPETWIHRRWVLQQLSQETSLPSSVAKGSLGVVPAERTQRIIQEEMEVCSEAAGRYPSNYNAWSHRIWVLQNVAKLDLKILLDELSSTKHWASVHVSDHSGFHYRQFLLKSLISQTTTDNAVPQHNSLKCEPKEAAAAAASAEEPSVSLPQLLEEEVEFCTDLIDSYPGHETLWCHRRHVFYLQHHLNGRLPPSLTPLSPADCSGAALNDLHQIPTSPQLSQAMEVDGLSDSSKQGYSQETKRLKRTPAPDSLGLEMEHKFIDQVLSTCRNVEQARYANAYRKWLVTLSQ", "length": 509 }, "evidence": [ { "id": "A0A287A5T5", "url": "https://omabrowser.org/oma/group/A0A287A5T5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54KV5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MASVESKVQESKKLYDELNLIFINNPEINEIGFVMSSKDYDGLENKPFVLVENKLGISFQWMIKLYSYALTYFTELKSAFEKKMNDLPERHQQLLVNELLQATRNVLLINAENLTALNLRKELINLKYIKHKDEISLLNLIFTKHPKSGEGWAHRKWVITDYFKKTGDYLDYEIELAVCKRVAEIYPKNYYSWTHRWWILQHLSVDIILKDLETMEDWVKRNISDYCGYHHRYLILTHLFNKCYNSNDDNNNNESKSEENSNEMKIHKLWEDEFNFIHKIINLYPGHESSWSYKRVLTLFWLQIAQPIVFQRNISTTVPITSLQQESQFVDSILEDIDSSYYEQQKSFAQRYLLSIYELKFKDSADFSIDIDQVKNNYSIIINDLKISFPNQLKVWEYKLNQFVGQ", "length": 406 }, "evidence": [ { "id": "A0A287A5T5", "url": "https://omabrowser.org/oma/group/A0A287A5T5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q7Z6K3-1", "protein_name": "Protein prenyltransferase alpha subunit repeat-containing protein 1", "gene_name": "PTAR1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAETSEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHNKLLLYRTRKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVIDSSVMEQNPLRSEPALVPPKDEEAAVSTEEPRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHIFYLQHHLNAGSQLSQAMEVDGLNDSSKQGYSQETKRLKRTPVPDSLGLEMEHRFIDQVLSTCRNVEQARFASAYRKWLVTLSQ", "length": 402 }, "evidence": [ { "id": "A0A287A5T5", "url": "https://omabrowser.org/oma/group/A0A287A5T5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein prenyltransferase activity", "id": "GO:0008318", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008318", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5T5", "url": "https://www.uniprot.org/uniprotkb/A0A287A5T5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5T5", "url": "https://www.uniprot.org/uniprotkb/A0A287A5T5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A5T5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 401, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A5T5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A5T5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 43, "end_pos": 45 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AC29-1", "uniprot_ac": "A0A287AC29", "uniprot_id": "A0A287AC29_PIG", "mass": { "chemical_mass": 44220.0, "monoisotopic_mass": 44220.0 }, "refseq": {}, "gene_names": [ { "name": "MYLK4", "type": "recommended", "evidence": [ { "id": "A0A287AC29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29" } ] } ], "protein_names": [ { "name": "Myosin light chain kinase family member 4", "type": "synonym", "evidence": [ { "id": "A0A287AC29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AC29", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYLK4", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29", "locus": {} } ], "crossref": [ { "id": "A0A287AC29", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AC29", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028777", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028777", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14193", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14193", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24347", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24347", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AC29", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AC29-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP30", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP30-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP30-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXB9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6E0", "url": "https://www.uniprot.org/uniprotkb/I3L6E0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6E0-1", "url": "https://www.uniprot.org/uniprotkb/I3L6E0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLQAKRPGQGPTCCPGGRPEERACFPEDGCVEEMERRRCFLEETSSEQDSRSGKNQAKEDAWSHPGLETAPAEDKRTAPPSDDGPVPAAPFDHRIVTAKQAAVTSFYTVSRTEILGGGRFGQVHKCEEKATGLKLAAKIIKTRGAKDKDEAKNEINVMNQLDHVNLIQLYDAFESKHDIVLVLEYVDGGEPFDRIIDDNCSLTELDTILFIRQICEGIRHMHQMYVLHLDLKPENILCVNRDTKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVITYMLLSGLSPFLGDTDAETLNNILACRWDLEDAEFQDVSEEAREFISKLLIKEKSWRISASKALKHPWLSDHQLHSRLSAQKRKNCCPDAQDLEAK", "length": 391, "header": "tr|A0A287AC29-1|A0A287AC29_PIG Isoform 1 of Myosin light chain kinase family member 4 OS=Sus scrofa OX=9823 GN=MYLK4 PE=3 SV=2 CANONICAL=A0A287AC29-1" }, "isoforms": [ { "isoform_ac": "A0A287AC29-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29/entry#A0A287AC29-1", "sequence": { "sequence": "MLQAKRPGQGPTCCPGGRPEERACFPEDGCVEEMERRRCFLEETSSEQDSRSGKNQAKEDAWSHPGLETAPAEDKRTAPPSDDGPVPAAPFDHRIVTAKQAAVTSFYTVSRTEILGGGRFGQVHKCEEKATGLKLAAKIIKTRGAKDKDEAKNEINVMNQLDHVNLIQLYDAFESKHDIVLVLEYVDGGEPFDRIIDDNCSLTELDTILFIRQICEGIRHMHQMYVLHLDLKPENILCVNRDTKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVITYMLLSGLSPFLGDTDAETLNNILACRWDLEDAEFQDVSEEAREFISKLLIKEKSWRISASKALKHPWLSDHQLHSRLSAQKRKNCCPDAQDLEAK", "length": 391, "header": "tr|A0A287AC29-1|A0A287AC29_PIG Isoform 1 of Myosin light chain kinase family member 4 OS=Sus scrofa OX=9823 GN=MYLK4 PE=3 SV=2 CANONICAL=A0A287AC29-1" }, "locus": { "chromosome": "7", "start_pos": 1639517, "end_pos": 1574084, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062868.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062868.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041574.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041574.2" } ] } }, { "isoform_ac": "A0A5G2QP30-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29/entry#A0A5G2QP30-1", "sequence": { "sequence": "GHRQAPALEDTQAKEDAWSHPGLETAPAEDKRTAPPSERPSQKSQPSPETETGNECDKPPAEKTPASAAQRGSAAPPPEGPHDGVQDLAPGTPAEFRRRADGRDVLLPEGPSAGEGEAQGRADRTPRPAREGRHEERRSEEEPGGGEARAQGRSETPGEPEPDQRSGDEQCADRTEGEHVGDRCISSIKAVATSRTPGNSAIGPALPHAEPAEPSGGSKRRGAAESSVQEENKKSRIDAACAGEGHARRRTLETRQAAGSTQGQAQAAAGSKSPGQQDPLDDGPVPAAPFDHRIVTAKQAAVTSFYTVSRTEILGGGRFGQVHKCEEKATGLKLAAKIIKTRGAKDKDEAKNEINVMNQLDHVNLIQLYDAFESKHDIVLVLEYVDGGEPFDRIIDDNCSLTELDTILFIRQICEGIRHMHQMYVLHLDLKPENILCVNRDTKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVITYMLLSGLSPFLGDTDAETLNNILACRWDLEDAEFQDVSEEAREFISKLLIKEKSWRISASKALKHPWLSDHQLHSRLSAQKRKNCCPDAQDLEAK", "length": 590, "header": "tr|A0A5G2QP30-1|A0A287AC29_PIG Computationally mapped isoform of Myosin light chain kinase family member 4 OS=Sus scrofa OX=9823 GN=MYLK4 PE=3 SV=2 CANONICAL=A0A287AC29-1" }, "locus": { "chromosome": "7", "start_pos": 1634817, "end_pos": 1574084, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084701.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084701.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060042.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060042.2" } ] } }, { "isoform_ac": "A0A5G2QXB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29/entry#A0A5G2QXB9-1", "sequence": { "sequence": "MLQAKRPGQGPTCCPGGRPEERACFPEDGCVEEMERRRCFLEETSSEQDSRSGKNQAKEDAWSHPGLETAPAEDKRTAPPSDDGPVPAAPFDHRIVTAKQAAVTSFYTVSRTEILGGGRFGQVHKCEEKATGLKLAAKIIKTRGAKDKALSPPFVLQDEAKNEINVMNQLDHVNLIQLYDAFESKHDIVLVLEYVDGGEPFDRIIDDNCSLTELDTILFIRQICEGIRHMHQMYVLHLDLKPENILCVNRDTKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVITYMLLSGLSPFLGDTDAETLNNILACRWDLEDAEFQDVSEEAREFISKLLIKEKSWRISASKALKHPWLSDHQLHSRLSAQKRKNCCPDAQDLEAK", "length": 400, "header": "tr|A0A5G2QXB9-1|A0A287AC29_PIG Computationally mapped isoform of Myosin light chain kinase family member 4 OS=Sus scrofa OX=9823 GN=MYLK4 PE=3 SV=1 CANONICAL=A0A287AC29-1" }, "locus": { "chromosome": "7", "start_pos": 1639517, "end_pos": 1574084, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080077.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080077.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069579.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069579.1" } ] } }, { "isoform_ac": "I3L6E0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29/entry#I3L6E0-1", "sequence": { "sequence": "MLQAKRPGQGPTCCPGGRPEERACFPEDGCVEEMERRRCFLEETSSEQDSRSGKNQAKEDAWSHPGLETAPAEDKRTAPPSDDGPVPAAPFDHRIVTAKQAAVTSFYTVSRTEILGGGRFGQVHKCEEKATGLKLAAKIIKTRGAKDKDEAKNEINVMNQLDHVNLIQLYDAFESKHDIVLVLEYVDGGEPFDRIIDDNCSLTELDTILFIRQICEGIRHMHQMYVLHLDLKPENILCVNRDTKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVITYMLLSGLSPFLGDTDAETLNNILACRWDLEDAEFQDVSEEAREFISKLLIKEKSWRISASKALKHPWLSDHQLHSRLSAQVTVLGISPPLCRSASVFRCSDATGT", "length": 401, "header": "tr|I3L6E0-1|A0A287AC29_PIG Computationally mapped isoform of Myosin light chain kinase family member 4 OS=Sus scrofa OX=9823 GN=MYLK4 PE=3 SV=4 CANONICAL=A0A287AC29-1" }, "locus": { "chromosome": "7", "start_pos": 1639517, "end_pos": 1577578, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031472.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031472.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019591.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019591.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP30", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP30" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC29", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29" } ], "pmid": "" }, { "name": "myosin light chain kinase activity", "id": "GO:0004687", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004687", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC29", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC29", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC29", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC29", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AC29-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 391, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AC29-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AC29" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AC29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AC29" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 109, "end_pos": 364, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 199, "end_pos": 201 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ADG9-1", "uniprot_ac": "A0A287ADG9", "uniprot_id": "A0A287ADG9_PIG", "mass": { "chemical_mass": 18410.0, "monoisotopic_mass": 18410.0 }, "refseq": {}, "gene_names": [ { "name": "TSEN15", "type": "recommended", "evidence": [ { "id": "A0A287ADG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9" } ] } ], "protein_names": [ { "name": "tRNA-splicing endonuclease subunit SEN15", "type": "recommended", "evidence": [ { "id": "A0A287ADG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9/entry#names_and_taxonomy" } ] }, { "name": "tRNA-intron endonuclease SEN15", "type": "synonym", "evidence": [ { "id": "A0A287ADG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9/entry#names_and_taxonomy" } ] }, { "name": "tRNA-splicing endonuclease subunit Sen15", "type": "synonym", "evidence": [ { "id": "A0A287ADG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Non-catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. The tRNA splicing endonuclease is also involved in mRNA processing via its association with pre-mRNA 3'-end processing factors, establishing a link between pre-tRNA splicing and pre-mRNA 3'-end formation, suggesting that the endonuclease subunits function in multiple RNA-processing events.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Q0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Q0#function" }, { "database": "UniProtKB", "id": "ARBA00053263", "url": "https://www.uniprot.org/uniprotkb/ARBA00053263#function" }, { "database": "UniProtKB", "id": "A0A287ADG9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ADG9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TSEN15", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9", "locus": { "chromosome": "9", "start_pos": 125360687, "end_pos": 125301165, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031121", "url": "https://www.ensembl.org/id/ENSSSCG00000031121" } ] } } ], "crossref": [ { "id": "A0A287ADG9", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ADG9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031121", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031121", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011856", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011856", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036167", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036167", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR28582", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28582", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28582:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28582:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09631", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09631", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZXU3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZXU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXU3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADG9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0Q0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Q0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0Q0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Q0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6V2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6V2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6V2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEERRESQPTAGSSAMGPGGERGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQVYIAFLVYLDLMESKSWHEVNCVGLPDLQLICLLGTEIEGEGVQTVVPTPINASLSHNRIREILKASRKLQGDPDLPMSFTLAIVESDSTIVYYKLTDGFMLPDPQNISLRR", "length": 167, "header": "tr|A0A287ADG9-1|A0A287ADG9_PIG Isoform 1 of tRNA-splicing endonuclease subunit SEN15 OS=Sus scrofa OX=9823 GN=TSEN15 PE=3 SV=3 CANONICAL=A0A287ADG9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZXU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9/entry#A0A286ZXU3-1", "sequence": { "sequence": "MEERRESQPTAGSSAMGPGGERGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQVYIAFLVYLDLMESKSWHEVNCVGLPDLQLICLLGTEIEGEGVQTVVPTPINASLSHNRIFPLEDDTSTSQCLLYSYKIGLRPISLVHL", "length": 144, "header": "tr|A0A286ZXU3-1|A0A287ADG9_PIG Computationally mapped isoform of tRNA-splicing endonuclease subunit SEN15 OS=Sus scrofa OX=9823 GN=TSEN15 PE=3 SV=3 CANONICAL=A0A287ADG9-1" }, "locus": { "chromosome": "9", "start_pos": 125336562, "end_pos": 125301203, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053758.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053758.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036461.3", "url": "https://www.ensembl.org/id/ENSSSCP00000036461.3" } ] } }, { "isoform_ac": "A0A287ADG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9/entry#A0A287ADG9-1", "sequence": { "sequence": "MEERRESQPTAGSSAMGPGGERGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQVYIAFLVYLDLMESKSWHEVNCVGLPDLQLICLLGTEIEGEGVQTVVPTPINASLSHNRIREILKASRKLQGDPDLPMSFTLAIVESDSTIVYYKLTDGFMLPDPQNISLRR", "length": 167, "header": "tr|A0A287ADG9-1|A0A287ADG9_PIG Isoform 1 of tRNA-splicing endonuclease subunit SEN15 OS=Sus scrofa OX=9823 GN=TSEN15 PE=3 SV=3 CANONICAL=A0A287ADG9-1" }, "locus": { "chromosome": "9", "start_pos": 125336489, "end_pos": 125301203, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051353.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051353.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041850.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041850.3" } ] } }, { "isoform_ac": "A0A5G2R0Q0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9/entry#A0A5G2R0Q0-1", "sequence": { "sequence": "MEERRESQPTAGSSAMGPGGERGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQVYIAFLVYLDLMESKSWHEVNCVGLPDLQLICLLGTEIEGEGVQTVVPTPINASLSHNRIREILKASRKLQGDPDLPMSFTLAIVESDSTIVYYKLTDGFMLPDPQVSFETTVSKQKKRKLMTC", "length": 179, "header": "tr|A0A5G2R0Q0-1|A0A287ADG9_PIG Computationally mapped isoform of tRNA-splicing endonuclease subunit SEN15 OS=Sus scrofa OX=9823 GN=TSEN15 PE=3 SV=1 CANONICAL=A0A287ADG9-1" }, "locus": { "chromosome": "9", "start_pos": 125336001, "end_pos": 125301203, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089190.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089190.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070683.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070683.1" } ] } }, { "isoform_ac": "A0A5G2R6V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9/entry#A0A5G2R6V2-1", "sequence": { "sequence": "MEERRESQPTAGSSAMGPGGERGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQVYIAFLVYLDLMESKSWHEVNCVGLPDLQLICLLGTEIEGEGVQTVVPTPINASLSHNRSGPRKEHFLHFCQ", "length": 127, "header": "tr|A0A5G2R6V2-1|A0A287ADG9_PIG Computationally mapped isoform of tRNA-splicing endonuclease subunit SEN15 OS=Sus scrofa OX=9823 GN=TSEN15 PE=3 SV=1 CANONICAL=A0A287ADG9-1" }, "locus": { "chromosome": "9", "start_pos": 125360687, "end_pos": 125301203, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076236.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076236.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072810.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072810.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 104, "start_aa": "Thr", "end_pos": 104, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr104", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Q0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Q0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADG9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADG9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADG9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9" } ], "pmid": "" }, { "name": "tRNA-type intron splice site recognition and cleavage", "id": "GO:0000379", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000379", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADG9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9" } ], "pmid": "" }, { "name": "tRNA splicing, via endonucleolytic cleavage and ligation", "id": "GO:0006388", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006388", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADG9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADG9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ADG9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 167, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ADG9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ADG9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ADG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADG9" }, { "id": "PF09631", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09631" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": 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Promotes also the degradation of other substrates such as CBX4. Plays a role in inhibiting the activity of glucokinase GCK and both glucose-induced and basal insulin secretion.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABE3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABE3#function" }, { "database": "UniProtKB", "id": "ARBA00053529", "url": "https://www.uniprot.org/uniprotkb/ARBA00053529#function" }, { "database": "UniProtKB", "id": "F1S6Q6", "url": "https://www.uniprot.org/uniprotkb/F1S6Q6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ABE3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABE3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MIDN", "url": "https://www.uniprot.org/uniprotkb/A0A287ABE3", "locus": { "chromosome": "2", "start_pos": 77204017, "end_pos": 77211671, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013432", "url": "https://www.ensembl.org/id/ENSSSCG00000013432" } ] } } ], "crossref": [ { "id": "A0A287ABE3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ABE3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013432", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013432", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01804", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01804", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512395", "url": "https://www.ncbi.nlm.nih.gov/gene/100512395", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039336", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039336", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512395", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512395", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PSHDIGQ", "url": "https://omabrowser.org/oma/group/PSHDIGQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S6Q6", "url": "https://www.orthodb.org/?gene=F1S6Q6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23010", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23010", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23010:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23010:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00240", "url": 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"MEPQPGGARSCRRGAPGGACELGPAAETSSMSLAIHSTTGTRYELSVPPDETVEGLRKRLSQRLKVPKERLALLHKDTRLSSGKLQEFGVGDGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQVSDFLSGRSPLTLALRVGDHMMFVQLQLAAQHAPLQHRHVLAAAAAAAAARGDPSMTTTPVSSPCRPVSSAARVPPVPSSPTPASSSVTAGSFRSHSASTTCPEQMDCSPPASAGASPTSPAGGSPTSRSRKPGAVIESFVNHAPGVFSGTFSGTLHPNCQDSSGRPRRDIGTILQILNDLLSATRHYQGMPPSLTQLRCHAQCTPASPAPDLAPKTTSCEKLAAAAPASLSQARLCKPPGDRLRQTENRATRCKVERLQLLLQQKRLRRKARRDARGPYHWPPSRKAGRSDSSSSGGGGSPSEASGLGLDFEDSVWKPEVNPDIKSEFVVA", "length": 460, "header": "tr|A0A287ABE3-1|A0A287ABE3_PIG Isoform 1 of Midnolin OS=Sus scrofa OX=9823 GN=MIDN PE=4 SV=2 CANONICAL=A0A287ABE3-1" }, "isoforms": [ { "isoform_ac": "A0A287ABE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABE3/entry#A0A287ABE3-1", "sequence": { "sequence": "MEPQPGGARSCRRGAPGGACELGPAAETSSMSLAIHSTTGTRYELSVPPDETVEGLRKRLSQRLKVPKERLALLHKDTRLSSGKLQEFGVGDGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQVSDFLSGRSPLTLALRVGDHMMFVQLQLAAQHAPLQHRHVLAAAAAAAAARGDPSMTTTPVSSPCRPVSSAARVPPVPSSPTPASSSVTAGSFRSHSASTTCPEQMDCSPPASAGASPTSPAGGSPTSRSRKPGAVIESFVNHAPGVFSGTFSGTLHPNCQDSSGRPRRDIGTILQILNDLLSATRHYQGMPPSLTQLRCHAQCTPASPAPDLAPKTTSCEKLAAAAPASLSQARLCKPPGDRLRQTENRATRCKVERLQLLLQQKRLRRKARRDARGPYHWPPSRKAGRSDSSSSGGGGSPSEASGLGLDFEDSVWKPEVNPDIKSEFVVA", "length": 460, "header": "tr|A0A287ABE3-1|A0A287ABE3_PIG Isoform 1 of Midnolin OS=Sus scrofa OX=9823 GN=MIDN PE=4 SV=2 CANONICAL=A0A287ABE3-1" }, "locus": { "chromosome": "2", "start_pos": 77211472, "end_pos": 77205478, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049144.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049144.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041113.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041113.2" } ] } }, { "isoform_ac": "F1S6Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABE3/entry#F1S6Q6-1", "sequence": { "sequence": "MEPQPGGARSCRRGAPGGACELGPAAETSSMSLAIHSTTGTRYELSVPPDETVEGLRKRLSQRLKVPKERLALLHKDTRLSSGKLQEFGVGDGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQPPAAPSRGRAGGGSFRKYRFILFKHPWHRQGPQSPERGGERPQVSDFLSGRSPLTLALRVGDHMMFVQLQLAAQHAPLQHRHVLAAAAAAAAARGDPSMTTTPVSSPCRPVSSAARVPPVPSSPTPASSSVTAGSFRSHSASTTCPEQMDCSPPASAGASPTSPAGGSPTSRSRKPGAVIESFVNHAPGVFSGTFSGTLHPNCQDSSGRPRRDIGTILQILNDLLSATRHYQGMPPSLTQLRCHAQCTPASPAPDLAPKTTSCEKLAAAAPASLSQARLCKPPGDRLRQTENRATRCKVERLQLLLQQKRLRRKARRDARGPYHWPPSRKAGRSDSSSSGGGGSPSEASGLGLDFEDSVWKPEVNPDIKSEFVVA", "length": 503, "header": "tr|F1S6Q6-1|A0A287ABE3_PIG Computationally mapped isoform of Midnolin OS=Sus scrofa OX=9823 GN=MIDN PE=4 SV=4 CANONICAL=A0A287ABE3-1" }, "locus": { "chromosome": "2", "start_pos": 77211472, "end_pos": 77205478, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014676.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014676.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014281.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014281.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 210, "start_aa": "Thr", "end_pos": 210, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr210", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 247, "start_aa": "Thr", "end_pos": 247, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr247", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S6Q6", "url": "https://www.uniprot.org/uniprotkb/F1S6Q6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512395", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512395", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MNV0-1", "protein_name": "Midnolin", "gene_name": "MIDN", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPQPGGARSCRRGAPGGACELSPTAETAPMSLAIHSTTGTRYELSVPPDETVEGLRKRLSQRLKVPKERLALLHKDTRLSSGKLQEFGVGDGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQPPAAPDLGRAGGGGFRKYRFILFKHPWHRQGPQNPQRGGERPQVTQRGGPGRAGLGTLRAGALGLTGLSLQVSDFLSGRSPLTLALRVGDHMMFVQLQLAAQHAPLQHRHVLAAAAAATRGDPSMTTTPVSSPCRPVSSAARVPPVPTSPTPASSPVTAGSFRSHSASTTCPEQMDCSPAASTGASPTSPTGSSPTSRSRKPGAVIESFVNHAPGVFSGTFSGTLHPNCQDSSGRPRRDIGTILQILNDLLSATRHYQGMPPSLTQLRCHAQCTPDLGPKTTSCEKLAAAAPASLSQARLCKPPGDRLRQTENRATRCKVERLQLLLQQKRLRRKARRDARGPYHWPPSRKAGRSDSTGSGGGGSPSEAAGLGLDFEDSVWKPEVNPDIKSEFVVA", "length": 524 }, "evidence": [ { "id": "A0A287ABE3", "url": "https://omabrowser.org/oma/group/A0A287ABE3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V1AJR7-1", "protein_name": "Midnolin", "gene_name": "MIDN", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPQPGARSCSRGAAPCDPLPAERPVHLCIHTTTGARYEVAVPPDETVEGLKRRLSQRLKVPKERLALLHKDSRLSSGKLQDLGVVEGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQVNDFLSGRSPLTLALRVGDHMMFVQLQLAAQQSSGQLQHRHVIASRGEAGATNGPHCRTLHGSTGSGFARIPVVPSCPQSPAPSPTPATPAPPVYCNAPHPAPVTAGMFRSHGAGAQTVNSSVVSSCSEVDCSMRGGSSPSSSPAPSARSRKPGAVIESFVNHAPGVFSGTFSGTLHPNCQDSSGRPRRDIGTILQILNDLLSATRHYQGMPQSLAQLRCQTQFSSSSSSSSSSSSSPPASPDLTTKTTSEPLPAAAASPPLHPVVQCQSQIRMCKPSGDRLRQTENRATRCKVERLQLLMQQKRLRRKARRDARAPYHWLPNRKSSRTNSNSSVSSEGSLDLDFEDSVWKPEVKADIKSEFVVA", "length": 488 }, "evidence": [ { "id": "A0A287ABE3", "url": "https://omabrowser.org/oma/group/A0A287ABE3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4AE48-1", "protein_name": "Midnolin", "gene_name": "Midn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPQPGGARSCRRGAPGGACELSTTAESAAPMSLAIHSTTGTRYDLSVPHDETVEGLRKRLSQRLKVPKERLALLHKDTRLSSGKLQEFGVGDGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQPPATPGPGRAAGGGFRKYRLILFKRPWHRQGPQSPERGGERPQVSDFLSGRSPLTLALRVGDHMMFVQLQLAAQHAPLQHRHVLAAAAAAAAAARGDSSIATPVSSPCRPVSSAARVPPVSSSPSSPVSPSPVTAGTFQSHAASTTCPEQTDCSPPASSNTTSTPGSSPTPRSRKPGAVIESFVNHAPGVFSGTFSGTLHPNCQDSSGRPRRDIGTILQILNDLLSATRHYQGMPASLTQLRCHAQCSPASPAPDLTPKTTSCEKLATPSLLQGQSQIRMCKPPGDRLRQTENRATRCKVERLQLLLQQKRLRRKARRDARGPYHWTPSRKAGRSDSSSSGGGGSPSEATGLGLDFEDSVWKPEVNPDIQSEFVVA", "length": 505 }, "evidence": [ { "id": "A0A287ABE3", "url": "https://omabrowser.org/oma/group/A0A287ABE3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3TPJ7-1", "protein_name": "Midnolin", "gene_name": "Midn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPQPGGARSCRRGAPGGACELNTATESAAPMSLAIHSTTGTRYDLSVPHDETVEGLRKRLSQRLKVPKERLALLHKDTRLSSGKLQEFGVGDGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQVSDFLSGRSPLTLALRVGDHMMFVQLQLAAQHAPLQHRHVLAAAAAAAAAARGDSSVATPVSSPCRPVSSAARVPPVSSSPSSPVSPSPVTAGSFRSHAASTTCPEQMDCSPPASSSSTSTPGSSPTPRSRKPGAVIESFVNHAPGVFSGTFSGTLHPNCQDSSGRPRRDIGTILQILNDLLSATRHYQGMPPSLTQLRCHAQCSPASPAPDLTPKTTSCEKLAATSSTSLLQGQSQIRMCKPPGDRLRQTENRATRCKVERLQLLLQQKRLRRKARRDARGPYHWTPSRKAGRSDSSSSGGGGGPSEATGLGLDFEDSVWKPEVNPDIQSEFVVA", "length": 465 }, "evidence": [ { "id": "A0A287ABE3", "url": "https://omabrowser.org/oma/group/A0A287ABE3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504T8-1", "protein_name": "Midnolin", "gene_name": "MIDN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPQPGGARSCRRGAPGGACELGPAAEAAPMSLAIHSTTGTRYDLAVPPDETVEGLRKRLSQRLKVPKERLALLHKDTRLSSGKLQEFGVGDGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQVSDFLSGRSPLTLALRVGDHMMFVQLQLAAQHAPLQHRHVLAAAAAAAAARGDPSIASPVSSPCRPVSSAARVPPVPTSPSPASPSPITAGSFRSHAASTTCPEQMDCSPTASSSASPGASTTSTPGASPAPRSRKPGAVIESFVNHAPGVFSGTFSGTLHPNCQDSSGRPRRDIGTILQILNDLLSATRHYQGMPPSLAQLRCHAQCSPASPAPDLAPRTTSCEKLTAAPSASLLQGQSQIRMCKPPGDRLRQTENRATRCKVERLQLLLQQKRLRRKARRDARGPYHWSPSRKAGRSDSSSSGGGGSPSEASGLGLDFEDSVWKPEVNPDIKSEFVVA", "length": 468 }, "evidence": [ { "id": "A0A287ABE3", "url": "https://omabrowser.org/oma/group/A0A287ABE3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NYU6-1", "protein_name": "Midnolin", "gene_name": "midn", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDQHPSARSCSSRGAAPSCESVSGEPPMNLYIHSTTGTRFELSLPAEETVEGLKRRLSQRLKVPKERLALLHKETRLSSGKLQDLGITDGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQVSDFLSGRSPLTLALRVGDHMMFVQLQLAAQPSGGPQLQHRHLISRGSSEGTTGLSHGASGSASGMARVSHNPHPHHPHQHPHHPNTTLPSNPAAFPPSPSIPSIPPMYSTSASGHCSPPPQPSQLPGSFLHSQQPSSACAPSPSSPSPAASCPEASCSAKTSGNCNTPLRSRKPGAIIESFVNHAPGVFSGTFSGTLHPNCQDSTGRPRRDIGTILQILNDLLSATRHYQGMPPSLTQLRYQTQCTSPNSPAPSPPPSPPHTTGLTGLPTTVPSETQPTLHPLVQCQSQIRMCKPPGDRLRQTENRATRCKVERLQLLMQQKRLRRKARRDSRAPYHWLPNRKAGRSNSNSSMSSEGSLDLDFEDSVWKPDVKADMKSEFIMA", "length": 509 }, "evidence": [ { "id": "A0A287ABE3", "url": "https://omabrowser.org/oma/group/A0A287ABE3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABE3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABE3" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABE3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABE3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABE3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABE3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ABE3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 460, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ABE3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ABE3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ABE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABE3" }, { "id": "PS50053", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ubiquitin-like", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 105, "start_aa": "Met", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 210, 247 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28447", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28447", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ADA7", "url": "https://www.uniprot.org/uniprotkb/A0A287ADA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADA7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUX7", "url": "https://www.uniprot.org/uniprotkb/F1SUX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUX7-1", "url": "https://www.uniprot.org/uniprotkb/F1SUX7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LIN6", "url": "https://www.uniprot.org/uniprotkb/I3LIN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LIN6-1", "url": "https://www.uniprot.org/uniprotkb/I3LIN6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKAYLKSAEGFFVLNKSTTIGRHQDSDLVLESADIDNHHALIEFNEAEGSFVLQDFNSLSGTFVNGCHIQNVAVKLLPGDILRFGSAGLTYELVIENPSSVSFPWVRGPAPWSRPQPPRATHQPNQSPLPSQIPFHPGIRPAPVQRSWSQGFPRPTMVPPASHKRPVSAGGKMFSFVMDGPTHGVPIINQVWTNAVELSGQSVAEEIPGAGSSGEIFMDEDLGQQDKDEIILLLGKEVSRLSDFELESKYKDAVIANLQNEVANLSQKLSETATSRQNERVIPPKLQVLDEDVDAKEREIQSLKSQISALQKGYSQVLCQTLSERNSEIASLKNEGENLRRDHAVTAEVVSSLKKDVLVKDEQVQQLKQEVNQLKSENKEKDHQLEALSSRCSVLKEELKKEGAQKEHREAQEKELKLYKTQIHDMEKEVKKLREELKRSSTEQSLISKTLREKSKVEEKLQEDSRRKLLQLQEMGNRENLIKVNLERAVGQLEHFRSQVIKATYGRAKPFQDRPVSDQQLIERIAQVTEDNVNLQQKKWVLQRETQHSSSRQEEMAETVEKLQTTLASCQACMKMSCCSSDLKKEVALLQHLQVSPPVSGLQMVALDILRLSLSWLEETEQLLRDVGIQLSSSDKGLSLYLKYLLEHYKKIANQTQELQIKISSSQETQQSLLQEKLREHLAEKEQLSMERLQEEERLKARIKRLVEEKADLEESITQEKNRAKEALEEEQKRVQELENRLTRQKKALEESISQEKNRAKEALEEEQTKVQELENRLARQKEIAESSIAYEKHKAMEAIEKEKKKVQDLENRITKQKEEIDLQVQKEDILNNKLNDALAMVEKTQKTKTAECLKAESLTMQLKETVAELETAKTKMIMMEERIQRLQHTVRALQEDHESQKHGFENEIMEYKEQIKQHSQTIVSLEERLQKVTEHHKKIEGEIATLKDNEPAQEGDVQQRDPAAAPSLENSGKDTVCDHLIEDLLTAQKEILSQQEVIMKLRKNLTEAHSRMSDLRGELSEKQKMELERNVALVQQQSSELSVLKEKMAQMSSLVEKKDKELEVLKQALRASQEKHKLQLHKEKEHKPRNATQTCDISVQIEPIHTDIFLSSQEEQSFSDLGAKCKGSRHEEVIQRQKKALSELRARIKELEQASSSNHEEHMDESFLDLKTLRMEKNAQKILDVKPDLPTLSRVEIRMPQNGLSSPGSIPATEKLGKTDVTEALDLSEKLYMDMSKTLGSLMNIKDMSGHVSMKHLSPKERERVNQLRQRDLDLVFDKITQLKNRLERKEELLRGYEKDIEQLRQSKVSVQMYQSQVAKLEDDVYKQAEEKALLKEALQRMEHQLHQEKRVNRAIRQQKVGARKASPKIDQERQMLKREVSSKSSQSLLSSKPGGRS", "length": 1399, "header": "tr|A0A287ADA7-1|A0A287ADA7_PIG Isoform 1 of Forkhead associated phosphopeptide binding domain 1 OS=Sus scrofa OX=9823 GN=FHAD1 PE=4 SV=3 CANONICAL=A0A287ADA7-1" }, "isoforms": [ { "isoform_ac": "A0A287ADA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADA7/entry#A0A287ADA7-1", "sequence": { "sequence": "MKAYLKSAEGFFVLNKSTTIGRHQDSDLVLESADIDNHHALIEFNEAEGSFVLQDFNSLSGTFVNGCHIQNVAVKLLPGDILRFGSAGLTYELVIENPSSVSFPWVRGPAPWSRPQPPRATHQPNQSPLPSQIPFHPGIRPAPVQRSWSQGFPRPTMVPPASHKRPVSAGGKMFSFVMDGPTHGVPIINQVWTNAVELSGQSVAEEIPGAGSSGEIFMDEDLGQQDKDEIILLLGKEVSRLSDFELESKYKDAVIANLQNEVANLSQKLSETATSRQNERVIPPKLQVLDEDVDAKEREIQSLKSQISALQKGYSQVLCQTLSERNSEIASLKNEGENLRRDHAVTAEVVSSLKKDVLVKDEQVQQLKQEVNQLKSENKEKDHQLEALSSRCSVLKEELKKEGAQKEHREAQEKELKLYKTQIHDMEKEVKKLREELKRSSTEQSLISKTLREKSKVEEKLQEDSRRKLLQLQEMGNRENLIKVNLERAVGQLEHFRSQVIKATYGRAKPFQDRPVSDQQLIERIAQVTEDNVNLQQKKWVLQRETQHSSSRQEEMAETVEKLQTTLASCQACMKMSCCSSDLKKEVALLQHLQVSPPVSGLQMVALDILRLSLSWLEETEQLLRDVGIQLSSSDKGLSLYLKYLLEHYKKIANQTQELQIKISSSQETQQSLLQEKLREHLAEKEQLSMERLQEEERLKARIKRLVEEKADLEESITQEKNRAKEALEEEQKRVQELENRLTRQKKALEESISQEKNRAKEALEEEQTKVQELENRLARQKEIAESSIAYEKHKAMEAIEKEKKKVQDLENRITKQKEEIDLQVQKEDILNNKLNDALAMVEKTQKTKTAECLKAESLTMQLKETVAELETAKTKMIMMEERIQRLQHTVRALQEDHESQKHGFENEIMEYKEQIKQHSQTIVSLEERLQKVTEHHKKIEGEIATLKDNEPAQEGDVQQRDPAAAPSLENSGKDTVCDHLIEDLLTAQKEILSQQEVIMKLRKNLTEAHSRMSDLRGELSEKQKMELERNVALVQQQSSELSVLKEKMAQMSSLVEKKDKELEVLKQALRASQEKHKLQLHKEKEHKPRNATQTCDISVQIEPIHTDIFLSSQEEQSFSDLGAKCKGSRHEEVIQRQKKALSELRARIKELEQASSSNHEEHMDESFLDLKTLRMEKNAQKILDVKPDLPTLSRVEIRMPQNGLSSPGSIPATEKLGKTDVTEALDLSEKLYMDMSKTLGSLMNIKDMSGHVSMKHLSPKERERVNQLRQRDLDLVFDKITQLKNRLERKEELLRGYEKDIEQLRQSKVSVQMYQSQVAKLEDDVYKQAEEKALLKEALQRMEHQLHQEKRVNRAIRQQKVGARKASPKIDQERQMLKREVSSKSSQSLLSSKPGGRS", "length": 1399, "header": "tr|A0A287ADA7-1|A0A287ADA7_PIG Isoform 1 of Forkhead associated phosphopeptide binding domain 1 OS=Sus scrofa OX=9823 GN=FHAD1 PE=4 SV=3 CANONICAL=A0A287ADA7-1" }, "locus": { "chromosome": "6", "start_pos": 74641009, "end_pos": 74511762, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044638.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044638.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041958.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041958.3" } ] } }, { "isoform_ac": "F1SUX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADA7/entry#F1SUX7-1", "sequence": { "sequence": "MKAYLKSAEGFFVLNKSTTIGRHQDSDLVLESADIDNHHALIEFNEAEGSFVLQDFNSLSGTFVNGCHIQNVAVKLLPGDILRFGSAGLTYELVIENPSSVSFPWVRGPAPWSRPQPPRATHQPNQSPLPSQIPFHPGIRPAPVQRSWSQGFPRPTMVPPASHKRPVSAGGKMFSFVMDGPTHGVPIINQVWTNAVELSGQSVAEEIPGAGSSGEIFMDEDLGQQDKDEIILLLGKEVSRLSDFELESKYKDAVIANLQNEVANLSQKLSETATSRQNERVIPPKLQVLDEDVDAKEREIQSLKSQISALQKGYSQVLCQTLSERNSEIASLKNEGENLRRDHAVTAEVVSSLKKDVLVKDEQVQQLKQEVNQLKSENKEKDHQLEALSSRCSVLKEELKKEGAQKEHREAQEKELKLYKTQIHDMEKEVKKLREELKRSSTEQSLISKTLREKSKVEEKLQEDSRRKLLQLQEMGNRENLIKVNLERAVGQLEHFRSQVIKATYGRAKPFQDRPVSDQQLIERIAQVTEDNVNLQQKKWVLQRETQHSSSRQEEMAETVEKLQTTLASCQACMKMSCCSSDLKKEVALLQHLQVSPPVSGLQMVALDILRLSLSWLEETEQLLRDVGIQLSSSDKGLSLYLKYLLEHYKKIANQTQELQIKISSSQETQQSLLQEKLREHLAEKEQLSMERLQEEERLKARIKRLVEEKADLEESITQEKNRAKEALEEEQKRVQELENRLTRQKKALEESISQEKNRAKEALEEEQTKVQELENRLARQKEVLESSMAREKRKAKEALETEKRKVQDLENHLTQQKEIAESSIAYEKHKAMEAIEKEKKKVQDLENRITKQKEEIDLQVQKEDILNNKLNDALAMVEKTQKTKTAECLKAESLTMQLKETVAELETAKTKMIMMEERIQRLQHTVRALQEDHESQKHGFENEIMEYKEQIKQHSQTIVSLEERLQKVTEHHKKIEGEIATLKDNEPAQEGDVQQRDPAAAPSLENSGKDTVCDHLIEDLLTAQKEILSQQEVIMKLRKNLTEAHSRMSDLRGELSEKQKMELERNVALVQQQSSELSVLKEKMAQMSSLVEKKDKELEVLKQALRASQEKHKLQLHKEKEHKPRNATQTCDISVQIEPIHTDIFLSSQEEQSFSDLGAKCKGSRHEEVIQRQKKALSELRARIKELEQASSSNHEEHMDESFLDLKTLRMEKNAQKILDVKPDLPTLSRVEIRMPQNGLSSPGSIPATEKLGKTDVTEALDLSEKLYMDMSKTLGSLMNIKDMSGHVSMKHLSPKERERVNQLRQRDLDLVFDKITQLKNRLERKEELLRGYEKDIEQLRQSKVSVQMYQSQVAKLEDDVYKQAEEKALLKEALQRMEHQLHQEKRVNRAIRQQKERLEDLEQRNAKESAPCNCSFKEKERQRRMFVEAVKNKMQNSNFQVGARKASPKIDQERQMLKREVSSKSSQSLLSSKPGGRS", "length": 1480, "header": "tr|F1SUX7-1|A0A287ADA7_PIG Computationally mapped isoform of Forkhead associated phosphopeptide binding domain 1 OS=Sus scrofa OX=9823 GN=FHAD1 PE=4 SV=4 CANONICAL=A0A287ADA7-1" }, "locus": { "chromosome": "6", "start_pos": 74641009, "end_pos": 74511762, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003836.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003836.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003748.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003748.4" } ] } }, { "isoform_ac": "I3LIN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADA7/entry#I3LIN6-1", "sequence": { "sequence": "MKAYLKSAEGFFVLNKSTTIGRHQDSDLVLESADIDNHHALIEFNEAEGSFVLQDFNSLSGTFVNGCHIQNVAVKLLPGDILRFGSAGLTYELVIENPSSVSFPWVRGPAPWSRPQPPRATHQPNQSPLPSQIPFHPGIRPAPVQRSWSQGFPRPTMVPPASHKRPVSAGGKMFSFVMDGPTHGVPIINQVWTNAVELSGQSVAEEIPGAGSSGEIFMDEDLGQQDKDEIILLLGKEVSRLSDFELESKYKDAVIANLQNEVANLSQKLSETATSRQNERVIPPKLQVLDEDVDAKEREIQSLKSQISALQKGYSQVLCQTLSERNSEIASLKNEGENLRRDHAVTAEVVSSLKKDVLVKDEQVQQLKQEVNQLKSENKEKDHQLEALSSRCSVLKEELKKEGAQKEHREAQEKELKLYKTQIHDMEKEVKKLREELKRSSTEQSLISKTLREKSKLEHFRSQVIKATYGRAKPFQDRPVSDQQLIERIAQVTEDNVNLQQKKWVLQRETQHSSSRQEEMAETVEKLQTTLASCQACMKMSCCSSDLKKEVALLQHLQVSPPVSGLQMVALDILRLSLSWLEETEQLLRDVGIQLSSSDKGLSLYLKYLLEHYKKIANQTQELQIKISSSQETQQSLLQEKLREHLAEKEQLSMERLQEEERLKARIKRLVEEKADLEESITQEKNRAKEALEEEQKRVQELENRLTRQKKALEESISQEKNRAKEALEEEQTKVQELENRLARQKEIAESSIAYEKHKAMEAIEKEKKKVQDLENRITKQKEEIDLQVQKEDILNNKLNDALAMVEKTQKTKTAECLKAESLTMQLKETVAELETAKTKMIMMEERIQRLQHTVRALQEDHESQKHGFENEIMEYKEQIKQHSQTIVSLEERLQKVTEHHKKIEGEIATLKDNEPAQEGDVQQRDPAAAPSLENSGKDTVCDHLIEDLLTAQKEILSQQEVIMKLRKNLTEAHSRMSDLRGELSEKQKMELERNVALVQQQSSELSVLKEKMAQMSSLVEKKDKELEVLKQALRASQEKHKLQLHKEKEHKPRNATQTCDISVQIEPIHTDIFLSSQEEQSFSDLGAKCKGSRHEEVIQRQKKALSELRARIKELEQASSSNHEEHMDESFLDLKTLRMEKNAQKILDVKPDLPTLSRVEIRMPQNGLSSPGSIPATEKLGKTDVTEALDLSEKLYMDMSKTLGSLMNIKDMSGHVSMKHLSPKERERVNQLRQRDLDLVFDKITQLKNRLERKEELLRGYEKDIEQLRQSKVSVQMYQSQVAKLEDDVYKQAEEKALLKEALQRMEHQLHQEKRVNRAIRQQKVGARKASPKIDQERQMLKREVSSKSSQSLLSSKPGGRS", "length": 1363, "header": "tr|I3LIN6-1|A0A287ADA7_PIG Computationally mapped isoform of Forkhead associated phosphopeptide binding domain 1 OS=Sus scrofa OX=9823 GN=FHAD1 PE=4 SV=4 CANONICAL=A0A287ADA7-1" }, "locus": { "chromosome": "6", "start_pos": 74641009, "end_pos": 74511762, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027709.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027709.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023942.4", "url": "https://www.ensembl.org/id/ENSSSCP00000023942.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUX7", "url": "https://www.uniprot.org/uniprotkb/F1SUX7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1005, "end_pos": 1007, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1091, "end_pos": 1093, "annotation": "n_glycosylation_sequon" }, { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 654, "end_pos": 656, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ADA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADA7" }, { "id": "PS50006", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50006" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FHA", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 69, "start_aa": "Thr", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1005, "end_pos": 1007 }, { "start_pos": 1091, "end_pos": 1093 }, { "start_pos": 125, "end_pos": 127 }, { "start_pos": 15, "end_pos": 17 }, { "start_pos": 264, "end_pos": 266 }, { "start_pos": 654, "end_pos": 656 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ABD5-1", "uniprot_ac": "A0A287ABD5", "uniprot_id": "A0A287ABD5_PIG", "mass": { "chemical_mass": 60386.0, "monoisotopic_mass": 60386.0 }, "refseq": {}, "gene_names": [ { "name": "KRT6A", "type": "recommended", "evidence": [ { "id": "A0A287ABD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABD5" } ] } ], "protein_names": [ { "name": "Keratin 6A", "type": "synonym", "evidence": [ { "id": "A0A287ABD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABD5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF16208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6805567", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZY68", "url": "https://www.uniprot.org/uniprotkb/A0A286ZY68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZY68-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZY68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABD5", "url": "https://www.uniprot.org/uniprotkb/A0A287ABD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABD5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": 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"tr|A0A287ABD5-1|A0A287ABD5_PIG Isoform 1 of Keratin 6A OS=Sus scrofa OX=9823 GN=KRT6A PE=1 SV=1 CANONICAL=A0A287ABD5-1" }, "locus": { "chromosome": "5", "start_pos": 17851016, "end_pos": 17846213, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056843.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056843.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041103.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041103.2" } ] } }, { "isoform_ac": "A0A287B480-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABD5/entry#A0A287B480-1", "sequence": { "sequence": 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"url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102164968", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102164968", "resource": "KEGG Pathway" }, { "id": "R-SSC-6805567", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "resource": "Reactome", "description": "Keratinization" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABD5", "url": "https://www.uniprot.org/uniprotkb/A0A287ABD5" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": 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"MASGRSPCFYIEELNKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRSKKEAKNAAAKLAFEIINKEHKANSSSSLPTANPPDRQLTENYIGRINTISQKKNLSVNYEPCEPGEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKLQSENFMNADPPSSSCLSTASSDIQSSSPTTSTSASESATENGFSANTSESSDNSDRLNNSVLSPVNSSGSHPQRVQRILAPTFTSPMKEENKHSLNPRFVEDFIQIEPIGSGGFGQVFKAKHKIDKKTYVIKRVKYDCEKVEREVKALATLKHPNIVLYYGCWDGNDYDPEQSMNTLRSKTRCLFIQMEYCDKGTLEQWIDSQRNKEPDKCLALEFFEQITTGVHYIHSKQLIHRDLKPGNIFLVDTNQIKIGDFGLVTSLKNDEKRTSRKGTLRYMSPEQSSSEDYGNEVDIYALGLILAELLHICRTFSETLKLFECLKAGVLDVFNYKEKGLLRKLLSNDPKKRPNASEILKTLKEWKNVTEKKKRNTC", "length": 537, "header": "tr|A0A287ABT2-1|A0A287ABT2_PIG Isoform 1 of Interferon-induced, double-stranded RNA-activated protein kinase OS=Sus scrofa OX=9823 GN=EIF2AK2 PE=1 SV=1 CANONICAL=A0A287ABT2-1" }, "isoforms": [ { "isoform_ac": "A0A287ABT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2/entry#A0A287ABT2-1", "sequence": { "sequence": "MASGRSPCFYIEELNKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRSKKEAKNAAAKLAFEIINKEHKANSSSSLPTANPPDRQLTENYIGRINTISQKKNLSVNYEPCEPGEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKLQSENFMNADPPSSSCLSTASSDIQSSSPTTSTSASESATENGFSANTSESSDNSDRLNNSVLSPVNSSGSHPQRVQRILAPTFTSPMKEENKHSLNPRFVEDFIQIEPIGSGGFGQVFKAKHKIDKKTYVIKRVKYDCEKVEREVKALATLKHPNIVLYYGCWDGNDYDPEQSMNTLRSKTRCLFIQMEYCDKGTLEQWIDSQRNKEPDKCLALEFFEQITTGVHYIHSKQLIHRDLKPGNIFLVDTNQIKIGDFGLVTSLKNDEKRTSRKGTLRYMSPEQSSSEDYGNEVDIYALGLILAELLHICRTFSETLKLFECLKAGVLDVFNYKEKGLLRKLLSNDPKKRPNASEILKTLKEWKNVTEKKKRNTC", "length": 537, "header": "tr|A0A287ABT2-1|A0A287ABT2_PIG Isoform 1 of Interferon-induced, double-stranded RNA-activated protein kinase OS=Sus scrofa OX=9823 GN=EIF2AK2 PE=1 SV=1 CANONICAL=A0A287ABT2-1" }, "locus": { "chromosome": "3", "start_pos": 103087651, "end_pos": 103049380, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050794.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050794.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041474.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041474.1" } ] } }, { "isoform_ac": "A0A287BKF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2/entry#A0A287BKF1-1", "sequence": { "sequence": "MASGRSPCFYIEELNKYQQKNDVILKYRELCKTGPAHNLRSVAIKKKKRFTYQVVIDEKEFPKAEGRSKKEAKNAAAKLAFEIINKEHKANSSSSLPTANPPDRQLTENYIGRINTISQKKNLSVNYEPCEPGEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKLQSENFMNADPPSSSCLSTASSDIQSSSPTTSTSASESATENGFSANTSESSDNSDRLNNSVLSPVNSSGSHPQRVQRILAPTFTSPMKEENKHSLNPRFVEDFIQIEPIGSGGFGQVFKAKHKIDKKTYVIKRVKYDCEKVEREVKALATLKHPNIVLYYGCWDGNDYDPEQSMNTLRSKTRCLFIQMEYCDKGTLEQWIDSQRNKEPDKCLALEFFEQITTGVHYIHSKQLIHRDLKPGNIFLVDTNQIKIGDFGLVTSLKNDEKRTSRKGTLRYMSPEQSSSEDYGNEVDIYALGLILAELLHICRTFSETLKLFECLKAGVLDVFNYKEKGLLRKLLSNDPKKRPNASEILKTLKEWKNVTEKKKRNTC", "length": 546, "header": "tr|A0A287BKF1-1|A0A287ABT2_PIG Computationally mapped isoform of Interferon-induced, double-stranded RNA-activated protein kinase OS=Sus scrofa OX=9823 GN=EIF2AK2 PE=1 SV=2 CANONICAL=A0A287ABT2-1" }, "locus": { "chromosome": "3", "start_pos": 103087651, "end_pos": 103049380, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000034217.3", "url": "https://www.ensembl.org/id/ENSSSCT00000034217.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057073.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057073.2" } ] } }, { "isoform_ac": "A0A5G2QJU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2/entry#A0A5G2QJU0-1", "sequence": { "sequence": "MASGRSPCFYIEELNKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRSKKEAKNAAAKLAFEIINKEHKANSSSSLPTANPPDRQLTENYIGRINTISQKKNLSVNYEPCEPGEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKLQSENFMNSSGSHPQRVQRILAPTFTSPMKEEKFVEDFIQIEPIGSGGFGQVFKAKHKIDKKTYVIKRVKYDCEKVEREVKALATLKHPNIVLYYGCWDGNDYDPEQSMNTLRSKTRCLFIQMEYCDKGTLEQWIDSQRNKEPDKCLALEFFEQITTGVHYIHSKQLIHRDLKPGNIFLVDTNQIKIGDFGLVTSLKNDEKRTSRKGTLRYMSPEQSSSEDYGNEVDIYALGLILAELLHICRTFSETLKLFECLKAGVLDVFNYKEKGLLRKLLSNDPKKRPNASEILKTLKEWKNVTEKKKRNTC", "length": 471, "header": "tr|A0A5G2QJU0-1|A0A287ABT2_PIG Computationally mapped isoform of Interferon-induced, double-stranded RNA-activated protein kinase OS=Sus scrofa OX=9823 GN=EIF2AK2 PE=1 SV=2 CANONICAL=A0A287ABT2-1" }, "locus": { "chromosome": "3", "start_pos": 103087651, "end_pos": 103049380, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077152.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077152.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064758.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064758.2" } ] } }, { "isoform_ac": "A0A5G2QYH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2/entry#A0A5G2QYH9-1", "sequence": { "sequence": "MASGRSPCFYIEELNKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRSKKEAKNAAAKLAFEIINKEHKANSSSSLPTANPPDRQLTENYIGRINTISQKKNLSVNYEPCEPGEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKLQSENFMNADPPSSSCLSTASSDIQSSSPTTSTSASESATENGFSANTSESSDNSDRLNNSVLSPVNSSGSHPQRVQRILAPTFTSPMKEEKKVEREVKALATLKHPNIVLYYGCWDGNDYDPEQSMNTLRSKTRCLFIQMEYCDKGTLEQWIDSQRNKEPDKCLALEFFEQITTGVHYIHSKQLIHRDLKPGNIFLVDTNQIKIGDFGLVTSLKNDEKRTSRKGTLRYMSPEQSSSEDYGNEVDIYALGLILAELLHICRTFSETLKLFECLKAGVLDVFNYKEKGLLRKLLSNDPKKRPNASEILKTLKEWKNVTEKKKRNTC", "length": 489, "header": "tr|A0A5G2QYH9-1|A0A287ABT2_PIG Computationally mapped isoform of Interferon-induced, double-stranded RNA-activated protein kinase OS=Sus scrofa OX=9823 GN=EIF2AK2 PE=1 SV=1 CANONICAL=A0A287ABT2-1" }, "locus": { "chromosome": "3", "start_pos": 103087651, "end_pos": 103049380, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068581.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068581.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067006.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067006.1" } ] } }, { "isoform_ac": "A0A8W4F8A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2/entry#A0A8W4F8A0-1", "sequence": { "sequence": "MASGRSPCFYIEELNKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRSKKEAKNAAAKLAFEIINKEHKANSSSSLPTANPPDRQLTENYIGRINTISQKKNLSVNYEPCEPGEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKLQSENFMNADPPSSSCLSTASSDIQSSSPTTSTSASESATENGFSANTSESSDNSDRLNNSVLSPVVQYLSLSFLINLISFVSSFKNDLRKVEREVKALATLKHPNIVLYYGCWDGNDYDPEQSMNTLRSKTRCLFIQMEYCDKGTLEQWIDSQRNKEPDKCLALEFFEQITTGVHYIHSKQLIHRDLKPGNIFLVDTNQIKIGDFGLVTSLKNDEKRTSRKGTLRYMSPEQSSSEDYGNEVDIYALGLILAELLHICRTFSETLKLFECLKAGVLDVFNYKEKGLLRKLLSNDPKKRPNASEILKTLKEWKNVTEKKKRNTC", "length": 487, "header": "tr|A0A8W4F8A0-1|A0A287ABT2_PIG Computationally mapped isoform of Interferon-induced, double-stranded RNA-activated protein kinase OS=Sus scrofa OX=9823 GN=EIF2AK2 PE=1 SV=1 CANONICAL=A0A287ABT2-1" }, "locus": { "chromosome": "3", "start_pos": 103087651, "end_pos": 103049380, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101256.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101256.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075532.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075532.1" } ] } }, { "isoform_ac": "A0A8W4FPV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2/entry#A0A8W4FPV9-1", "sequence": { "sequence": "MASGRSPCFYIEELNKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRSKKEAKNAAAKLAFEIINKEHKANSSSSLPTANPPDRQLTENYIGRINTISQKKNLSVNYEPCEPGEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKLQSENFMNADPPSSSCLSTASSDIQSSSPTTSTSASESATENGFSANTSESSDNSDRLNNSVLSPVNSSGSHPQRVQRILAPTFTSPMKEENKHSLNPRFVEDFIQIEPIGSGGFGQVFKAKHKIDKKTYVIKRVKYDCEKVEREVKALATLKHPNIVLYYGCWDGNDYDPEQSMNTLRSKTRCLFIQMEYCDKGTLEQWIDSQRNKEPDKCLALEFFEQITTGVHYIHSKQLIHRDLKSSSEDYGNEVDIYALGLILAELLHICRTFSETLKLFECLKAGVLDVFNYKEKGLLRKLLSNDPKKRPNASEILKTLKEWKNVTEKKKRNTC", "length": 494, "header": "tr|A0A8W4FPV9-1|A0A287ABT2_PIG Computationally mapped isoform of Interferon-induced, double-stranded RNA-activated protein kinase OS=Sus scrofa OX=9823 GN=EIF2AK2 PE=1 SV=1 CANONICAL=A0A287ABT2-1" }, "locus": { "chromosome": "3", "start_pos": 103087651, "end_pos": 103049380, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103378.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103378.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080989.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080989.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJU0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1169408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169408", "resource": "Reactome", "description": "ISG15 antiviral mechanism" }, { "id": "R-SSC-9833482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9833482", "resource": "Reactome", "description": "PKR-mediated signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "P19525-1", "protein_name": "Interferon-induced, double-stranded RNA-activated protein kinase", "gene_name": "EIF2AK2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSGSFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAKRSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEKNERHTC", "length": 551 }, "evidence": [ { "id": "A0A287ABT2", "url": "https://omabrowser.org/oma/group/A0A287ABT2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03963-1", "protein_name": "Interferon-induced, double-stranded RNA-activated protein kinase", "gene_name": "Eif2ak2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASDTPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENKVDCHTSASEQGLFVGNYIGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAGTSSSVVTSTFSGFSSSSSMTSNGVSQSAPGSFSSENVFTNGLGENKRKSGVKVSPDDVQRNKYTLDARFNSDFEDIEEIGLGGFGQVFKAKHRIDGKRYAIKRVKYNTEKAEHEVQALAELNHVNIVQYHSCWEGVDYDPEHSMSDTSRYKTRCLFIQMEFCDKGTLEQWMRNRNQSKVDKALILDLYEQIVTGVEYIHSKGLIHRDLKPGNIFLVDERHIKIGDFGLATALENDGKSRTRRTGTLQYMSPEQLFLKHYGKEVDIFALGLILAELLHTCFTESEKIKFFESLRKGDFSNDIFDNKEKSLLKKLLSEKPKDRPETSEILKTLAEWRNISEKKKRNTC", "length": 515 }, "evidence": [ { "id": "A0A287ABT2", "url": "https://omabrowser.org/oma/group/A0A287ABT2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "non-membrane spanning protein tyrosine kinase activity", "id": "GO:0004715", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004715", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "double-stranded RNA binding", "id": "GO:0003725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003725", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "eukaryotic translation initiation factor 2alpha kinase activity", "id": "GO:0004694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004694", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "protein tyrosine kinase activity", "id": "GO:0004713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004713", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 18, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "regulation of NLRP3 inflammasome complex assembly", "id": "GO:1900225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900225", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "positive regulation of non-canonical NF-kappaB signal transduction", "id": "GO:1901224", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901224", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "positive regulation of chemokine production", "id": "GO:0032722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032722", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "negative regulation of viral genome replication", "id": "GO:0045071", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045071", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "regulation of hematopoietic stem cell proliferation", "id": "GO:1902033", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902033", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "positive regulation of canonical NF-kappaB signal transduction", "id": "GO:0043123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043123", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "regulation of hematopoietic stem cell differentiation", "id": "GO:1902036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902036", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "negative regulation of translation", "id": "GO:0017148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017148", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "regulation of translational initiation", "id": "GO:0006446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006446", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "negative regulation of osteoblast proliferation", "id": "GO:0033689", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033689", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "cellular response to amino acid starvation", "id": "GO:0034198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034198", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "response to interferon-alpha", "id": "GO:0035455", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035455", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "positive regulation of stress-activated MAPK cascade", "id": "GO:0032874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032874", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "negative regulation of cytoplasmic translation", "id": "GO:2000766", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000766", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" }, { "name": "antiviral innate immune response", "id": "GO:0140374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140374", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ABT2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 514, "end_pos": 516, "annotation": "n_glycosylation_sequon" }, { "start_pos": 527, "end_pos": 529, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] }, { "id": "R-SSC-1169406", "name": "ISGylation of host proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1169406", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169406" } ] }, { "id": "R-SSC-1678841", "name": "Regulation of protein ISGylation by ISG15 deconjugating enzyme USP18", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1678841", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1678841" } ] }, { "id": "R-SSC-9833635", "name": "p-PKR dimer localizes to the nucleus", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9833635", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9833635" } ] }, { "id": "R-SSC-9833777", "name": "PKR binds activating host RNA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9833777", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9833777" } ] }, { "id": "R-SSC-9833973", "name": "ISGylation of PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-168699" ], "output_participant_list": [ "R-SSC-936014" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9833973", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9833973" } ] }, { "id": "R-SSC-9834807", "name": "ILF3 binds PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9834807", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9834807" } ] }, { "id": "R-SSC-9834821", "name": "p-PRKRA dimer binds PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9834821", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9834821" } ] }, { "id": "R-SSC-9835121", "name": "Heparin binds PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9835121", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9835121" } ] }, { "id": "R-SSC-9835189", "name": "NCK1 binds PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9835189", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9835189" } ] }, { "id": "R-SSC-9835328", "name": "NPM binds PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9835328", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9835328" } ] }, { "id": "R-SSC-9835358", "name": "p-TARBP2 binds PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9835358", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9835358" } ] }, { "id": "R-SSC-9835385", "name": "DUS2 binds PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9835385", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9835385" } ] }, { "id": "R-SSC-9835411", "name": "FA core complex:HSP70s binds PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9835411", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9835411" } ] }, { "id": "R-SSC-9835443", "name": "STAT1,STAT3 binds PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9835443", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9835443" } ] }, { "id": "R-SSC-9835454", "name": "DNAJC3 binds PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9835454", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9835454" } ] }, { "id": "R-SSC-9835944", "name": "ADAR1 binds PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9835944", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9835944" } ] }, { "id": "R-SSC-9836159", "name": "p-PKR dimer phosphorylates DHX9", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-847700" ], "output_participant_list": [ "R-SSC-9836168" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9836159", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9836159" } ] }, { "id": "R-SSC-9836184", "name": "p-PKR dimer phosphorylates CDK1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-170075" ], "output_participant_list": [ "R-SSC-9836187" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9836184", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9836184" } ] }, { "id": "R-SSC-9836322", "name": "p-PKR dimer phosphorylates MKK6", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9836322", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9836322" } ] }, { "id": "R-SSC-9836362", "name": "p-PKR dimer phosphorylates TP53 tetramer", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9836362", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9836362" } ] }, { "id": "R-SSC-9836383", "name": "p-PKR dimer phosphorylates ILF3:ILF2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [ "R-SSC-9836381", "R-SSC-9836392" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9836383", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9836383" } ] }, { "id": "R-SSC-9836404", "name": "p-PKR dimer phosphorylates MAPT", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [ "R-SSC-9836400" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9836404", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9836404" } ] }, { "id": "R-SSC-9836435", "name": "p-PKR dimer phosphorylates SNCA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-5658500" ], "output_participant_list": [ "R-SSC-9836432" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9836435", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9836435" } ] }, { "id": "R-SSC-9836500", "name": "IKK complex is activated by PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9836500", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9836500" } ] }, { "id": "R-SSC-9836515", "name": "p-PKR dimer phosphorylates PTPN2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-997292" ], "output_participant_list": [ "R-SSC-9836510" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9836515", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9836515" } ] }, { "id": "R-SSC-9836606", "name": "SPHK1 binds PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9836606", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9836606" } ] }, { "id": "R-SSC-9836617", "name": "p-PKR dimer phosphorylates SPHK1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-9836616" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9836617", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9836617" } ] }, { "id": "R-SSC-9836664", "name": "p-PKR dimer phosphorylates PPP2R5A", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9836664", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9836664" } ] }, { "id": "R-SSC-9836702", "name": "PKR inhibitors bind PKR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9836702", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9836702" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-168699", "participant_name": "EIF2AK2 [cytosol]", "crossref": [ { "id": "A0A287BKF1", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000008496", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000057073", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000034217", "database": "ENSEMBL", "url": "" }, { "id": "87607", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-170075", "participant_name": "CDK1 [cytosol]", "crossref": [ { "id": "ENSSSCT00000050632", "database": "ENSEMBL", "url": "" }, { "id": "XP_005671073.1", "database": "RefSeq", "url": "" }, { "id": "NP_001152776.1", "database": "RefSeq", "url": "" }, { "id": "XP_005671070.1", "database": "RefSeq", "url": "" }, { "id": "C0SW08", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000010214", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000044214", "database": "ENSEMBL", "url": "" }, { "id": "103917", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-5658500", "participant_name": "SNCA [cytosol]", "crossref": [ { "id": "Q3I5G7", "database": "UniProt", "url": "" }, { "id": "XP_013834477.1", "database": "RefSeq", "url": "" }, { "id": "XP_005667046.1", "database": "RefSeq", "url": "" }, { "id": "XP_013834472.1", "database": "RefSeq", "url": "" }, { "id": "XP_020956172.1", "database": "RefSeq", "url": "" }, { "id": "XP_013834476.1", "database": "RefSeq", "url": "" }, { "id": "NP_001032222.1", "database": "RefSeq", "url": "" }, { "id": "XP_005667048.1", "database": "RefSeq", "url": "" }, { "id": "XP_013834474.1", "database": "RefSeq", "url": "" }, { "id": "XP_020956173.1", "database": "RefSeq", "url": "" }, { "id": "XP_013834473.1", "database": "RefSeq", "url": "" }, { "id": "XP_013834475.1", "database": "RefSeq", "url": "" }, { "id": "XP_005667047.1", "database": "RefSeq", "url": "" }, { "id": "93285", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-847700", "participant_name": "DHX9 [cytosol]", "crossref": [ { "id": "K7GND3", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000026806", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000029386", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000034683", "database": "ENSEMBL", "url": "" }, { "id": "XP_020919438.1", "database": "RefSeq", "url": "" }, { "id": "XP_020919437.1", "database": "RefSeq", "url": "" }, { "id": "87299", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-936014", "participant_name": "UBE2L6 [cytosol]", "crossref": [ { "id": "A0A8D1FMH4", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000025317", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000030523", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000023379", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9836168", "participant_name": "phospho-DHX9 [cytosol]", "crossref": [ { "id": "XP_020919438.1", "database": "RefSeq", "url": "" }, { "id": "K7GND3", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000029386", "database": "ENSEMBL", "url": "" }, { "id": "87299", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000034683", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000026806", "database": "ENSEMBL", "url": "" }, { "id": "XP_020919437.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9836187", "participant_name": "phospho-p-Y4-CDK1 [cytosol]", "crossref": [ { "id": "C0SW08", "database": "UniProt", "url": "" }, { "id": "XP_005671073.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000044214", "database": "ENSEMBL", "url": "" }, { "id": "XP_005671070.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCG00000010214", "database": "ENSEMBL", "url": "" }, { "id": "NP_001152776.1", "database": "RefSeq", "url": "" }, { "id": "103917", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000050632", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9836381", "participant_name": "phospho-ILF3 [cytosol]", "crossref": [ { "id": "ENSSSCP00000028612", "database": "ENSEMBL", "url": "" }, { "id": "89120", "database": "VGNC", "url": "" }, { "id": "K7GL83", "database": "UniProt", "url": "" }, { "id": "ENSSSCT00000034746", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000013638", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9836392", "participant_name": "ILF2 [cytosol]", "crossref": [ { "id": "ENSSSCT00000034724", "database": "ENSEMBL", "url": "" }, { "id": "89119", "database": "VGNC", "url": "" }, { "id": "ENSSSCG00000028553", "database": "ENSEMBL", "url": "" }, { "id": "K7GS49", "database": "UniProt", "url": "" }, { "id": "XP_005663466.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000030729", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9836400", "participant_name": "phospho-MAPT [cytosol]", "crossref": [ { "id": "ENSSSCT00000042873", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000017311", "database": "ENSEMBL", "url": "" }, { "id": "A0A286ZJ75", "database": "UniProt", "url": "" }, { "id": "90016", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000031628", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9836432", "participant_name": "phospho-p-S129-SNCA [cytosol]", "crossref": [ { "id": "NP_001032222.1", "database": "RefSeq", "url": "" }, { "id": "XP_013834473.1", "database": "RefSeq", "url": "" }, { "id": "XP_005667046.1", "database": "RefSeq", "url": "" }, { "id": "XP_005667047.1", "database": "RefSeq", "url": "" }, { "id": "XP_020956172.1", "database": "RefSeq", "url": "" }, { "id": "Q3I5G7", "database": "UniProt", "url": "" }, { "id": "XP_013834474.1", "database": "RefSeq", "url": "" }, { "id": "93285", "database": "VGNC", "url": "" }, { "id": "XP_005667048.1", "database": "RefSeq", "url": "" }, { "id": "XP_013834472.1", "database": "RefSeq", "url": "" }, { "id": "XP_013834475.1", "database": "RefSeq", "url": "" }, { "id": "XP_013834477.1", "database": "RefSeq", "url": "" }, { "id": "XP_013834476.1", "database": "RefSeq", "url": "" }, { "id": "XP_020956173.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9836510", "participant_name": "phospho-p-PTPN2 [cytosol]", "crossref": [ { "id": "ENSSSCG00000021738", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000094723", "database": "ENSEMBL", "url": "" }, { "id": "A0A8W4FBD5", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000075605", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9836616", "participant_name": "SPHK1 [nucleoplasm]", "crossref": [ { "id": "ENSSSCT00000018703", "database": "ENSEMBL", "url": "" }, { "id": "93404", "database": "VGNC", "url": "" }, { "id": "ENSSSCG00000017178", "database": "ENSEMBL", "url": "" }, { "id": "XP_005656973.1", "database": "RefSeq", "url": "" }, { "id": "F1RWP6", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000018202", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-997292", "participant_name": "PTPN2 [cytosol]", "crossref": [ { "id": "A0A8W4FBD5", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000021738", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000075605", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000094723", "database": "ENSEMBL", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ABT2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 537, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ABT2-F1.pdb", "url_external": 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"name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 211, "end_pos": 213 }, { "start_pos": 223, "end_pos": 225 }, { "start_pos": 231, "end_pos": 233 }, { "start_pos": 514, "end_pos": 516 }, { "start_pos": 527, "end_pos": 529 }, { "start_pos": 82, "end_pos": 84 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"name": "SHISA7", "type": "recommended", "evidence": [ { "id": "A0A287ACI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ] }, { "name": "SHISA7", "type": "synonym", "evidence": [ { "id": "XP_020950695", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950695" } ] } ], "protein_names": [ { "name": "Shisa family member 7", "type": "synonym", "evidence": [ { "id": "A0A287ACI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3/entry#names_and_taxonomy" } ] }, { "name": "protein shisa-7 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020950695", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950695" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SHISA7", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3", "locus": { "chromosome": "6", "start_pos": 59582708, "end_pos": 59601885, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035924", "url": "https://www.ensembl.org/id/ENSSSCG00000035924" } ] } } ], "crossref": [ { "id": "A0A287ACI3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ACI3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035924", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035924", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110261060", "url": "https://www.ncbi.nlm.nih.gov/gene/110261060", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053891", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053891", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110261060", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261060", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MLDRHHM", "url": "https://omabrowser.org/oma/group/MLDRHHM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AUZ9", "url": "https://www.orthodb.org/?gene=A0A287AUZ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31774", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31774", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31774:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31774:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13908", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13908", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020950695", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950695", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUZ9", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSALLLLGTLLLLASTTGQAGARPSNATSPEPPGPLPALLAHLRRLTGALTGGGGAASPGTNGTRTSTPNGAGAAARAPPPAELCHGYYDVMGQYDATFNCSTGSYRFCCGTCHYRFCCEHRHMRLAQASCSNYDTPRWATTPPPLAGGAGGAGGAGGGPGPGQAGWLEGGRAGGAGGRGGEGPGGSTAYVVCGVISFALAVGVGAKVAFSKASRAPRAHREINVPRALVDILRHQAGPGARPDRARSSSLTPGVGVPDSMPPRTPKNLYNTVKPSNLDWRAIPPPSPSLHYSTLSCSRSFHNLSHLPPSYEAAVKSELNRYSSLKRLAEKDLDEAYLKPRHVAEVPRGTLPLHALRRPGTGGGYRMDGWGGPEELGLAPAPNPRRVMSQEHLLGDGGRARYEFTLPRARLVSQEHLLLSSPEALRQSREHLLSPPRSPALPPEPTARASLAASHSNLLLGPGGPPTPLHGLPPPPGLHAHHHHGLHGSPQPAWMSDAGGGGGTLARRPPFQRQGTLEQLQFIPGHHLPQHLRTASKNEVTV", "length": 542, "header": "tr|A0A287ACI3-1|A0A287ACI3_PIG Isoform 1 of Shisa family member 7 OS=Sus scrofa OX=9823 GN=SHISA7 PE=4 SV=1 CANONICAL=A0A287ACI3-1" }, "isoforms": [ { "isoform_ac": "A0A287ACI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3/entry#A0A287ACI3-1", "sequence": { "sequence": "MSALLLLGTLLLLASTTGQAGARPSNATSPEPPGPLPALLAHLRRLTGALTGGGGAASPGTNGTRTSTPNGAGAAARAPPPAELCHGYYDVMGQYDATFNCSTGSYRFCCGTCHYRFCCEHRHMRLAQASCSNYDTPRWATTPPPLAGGAGGAGGAGGGPGPGQAGWLEGGRAGGAGGRGGEGPGGSTAYVVCGVISFALAVGVGAKVAFSKASRAPRAHREINVPRALVDILRHQAGPGARPDRARSSSLTPGVGVPDSMPPRTPKNLYNTVKPSNLDWRAIPPPSPSLHYSTLSCSRSFHNLSHLPPSYEAAVKSELNRYSSLKRLAEKDLDEAYLKPRHVAEVPRGTLPLHALRRPGTGGGYRMDGWGGPEELGLAPAPNPRRVMSQEHLLGDGGRARYEFTLPRARLVSQEHLLLSSPEALRQSREHLLSPPRSPALPPEPTARASLAASHSNLLLGPGGPPTPLHGLPPPPGLHAHHHHGLHGSPQPAWMSDAGGGGGTLARRPPFQRQGTLEQLQFIPGHHLPQHLRTASKNEVTV", "length": 542, "header": "tr|A0A287ACI3-1|A0A287ACI3_PIG Isoform 1 of Shisa family member 7 OS=Sus scrofa OX=9823 GN=SHISA7 PE=4 SV=1 CANONICAL=A0A287ACI3-1" }, "locus": { "chromosome": "6", "start_pos": 59594510, "end_pos": 59587026, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052507.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052507.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041521.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041521.1" } ] } }, { "isoform_ac": "A0A287AUZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3/entry#A0A287AUZ9-1", "sequence": { "sequence": "MSALLLLGTLLLLASTTGQAGARPSNATSPEPPGPLPALLAHLRRLTGALTGGGGAASPGTNGTRTSTPNGAGAAARAPPPAELCHGYYDVMGQYDATFNCSTGSYRFCCGTCHYRFCCEHRHMRLAQASCSNYDTPRWATTPPPLAGGAGGAGGAGGGPGPGQAGWLEGGRAGGAGGRGGEGPGGSTAYVVCGVISFALAVGVGAKVAFSKASRAPRAHREINVPRALVDILRHQAGPGARPDRARSSSLTPGVGVPDSMPPRTPKNLYNTVKPSNLDNLHHNYLHLNVNSPKHHAATLDWRAIPPPSPSLHYSTLSCSRSFHNLSHLPPSYEAAVKSELNRYSSLKRLAEKDLDEAYLKPRHVAEVPRGTLPLHALRRPGTGGGYRMDGWGGPEELGLAPAPNPRRVMSQEHLLGDGGRARYEFTLPRARLVSQEHLLLSSPEALRQSREHLLSPPRSPALPPEPTARASLAASHSNLLLGPGGPPTPLHGLPPPPGLHAHHHHGLHGSPQPAWMSDAGGGGGTLARRPPFQRQGTLEQLQFIPGHHLPQHLRTASKNEVTV", "length": 564, "header": "tr|A0A287AUZ9-1|A0A287ACI3_PIG Computationally mapped isoform of Shisa family member 7 OS=Sus scrofa OX=9823 GN=SHISA7 PE=4 SV=1 CANONICAL=A0A287ACI3-1" }, "locus": { "chromosome": "6", "start_pos": 59594510, "end_pos": 59587026, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045401.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045401.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047752.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047752.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ9", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110261060", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261060", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6ANL3-1", "protein_name": "Shisa family member 7", "gene_name": "Shisa7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPALLLIGTVALLASTAGPVGARPSNDTSAVAPGPLPALLAHLRRLTGALAGGGSAAGANANATKTSPAGGTGAAARAPPPAELCHGYYDVMGQYDATFNCSTGSYRFCCGTCHYRFCCEHRHMRLAQASCSNYDTPRWATTPPPLAGGAGGAGGAGGGPGPGQAGWLEGGRAGGAGGRGGEGPGGSTAYVVCGVISFALAVGVGAKVAFSKASRAPRAHREINVPRALVDILRHQAGPATRPDRARSSSLTPGLGGPESMAPRTPKNLYNTMKPSNLDWRAMPPPSPSLHYSTLSCSRSFHNLSHLPPSYEAAVKSELNRYSSLKRLAEKDLDEAYLKRRHLEMPRGTLPLHALRRPGTGGGYRMDGWGGPEELGLAPAPNPRRVMSQEHLLGDGGRASRYEFTLPRARLVSQEHLLLSSPEALRQSREHLLSPPRSPALPPDPTTRASLAASHSNLLLGPGGPPTPLHGLPPSGLHAHHHHALHGSPQPAWMSDAGGGGGTLARRPPFQRQGTLEQLQFIPGHHLPQHLRTASKNEVTV", "length": 541 }, "evidence": [ { "id": "A0A287ACI3", "url": "https://omabrowser.org/oma/group/A0A287ACI3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M2B6I1-1", "protein_name": "Protein shisa-7 isoform X1", "gene_name": "shisa7b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPPAAILLFFLFGPLVSAVTLTSERSSVNGGPVLLLLRGRGRKAPPPDVQGKQAAAMAAEPEAAEIPPRPLPQIMLPLNVTDYALKPPLGAAQVAPPPQRLVDVDVCQGYYDVMGQFDNTFNCTKGTYVYCCGTCHYRFCCEHQRQRLDQDSCTNYRSPDWAVTAGPITQPPVRHDPDFDPLQQQSNNTAYVIGGVISFTMAVAIGVKVAFHKLSRRPRNRDINMPRALVDILRHQSSPVQQGERNNSTVLTTATSSEGTLGRQAKNFYAPVLQSKDNRTGKHSFGQTGSSPKHTATIERVPRMNNTQLASTGTLLSSKHNNSGFHPSFSHSFHNLAQLPPSYETVMKPELNRYSSLKRLEKNLDDYSGYYTSKRRPNNAPPSFHSSQHHLPWGGDFTLGARGTLPLNTSRTRIHMPSTTSTPNPYPLPQTQYNPTFDTMSKPPRRVMSQDQLLALGEGNTLSRLSKNQQHLYYKPMTTSKSSNTQTLRKSHERLLVSPDRLEERMMGDYGGMVPTMSRLSHHQKAQSQQNVCVTPSLDRHHMIKMNSHPTSGREQDHPAIPSGHGTGTLGWGEIHGSGGGPGTMGHNARRMAFATKRQNTIEQLHFLPGGGGGGGGAGQALRTGSKNEVTV", "length": 632 }, "evidence": [ { "id": "A0A287ACI3", "url": "https://omabrowser.org/oma/group/A0A287ACI3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NL88-1", "protein_name": "Protein shisa-7", "gene_name": "SHISA7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPALLLLVLLASSAGQARARPSNATSAEPAGPLPALLAHLRRLTGALTGGGGAASPGANGTRTGPAGGAGAAARAPPPAELCHGYYDVMGQYDATFNCSTGSYRFCCGTCHYRFCCEHRHMRLAQASCSNYDTPRWATTPPPLAGGAGGAGGAGGGPGPGQAGWLEGGRTGGAGGRGGEGPGGSTAYVVCGVISFALAVGVGAKVAFSKASRAPRAHRDINVPRALVDILRHQAGPGTRPDRARSSSLTPGIGGPDSMPPRTPKNLYNTVKTPNLDWRALPPPSPSLHYSTLSCSRSFHNLSHLPPSYEAAVKSELNRYSSLKRLAEKDLDEAYLKRRPLELPRGTLPLHALRRPGTGGGYRMEAWGGPEELGLAPAPNPRRVMSQEHLLGDGGRSRYEFTLPRARLVSQEHLLLSSPEALRQSREHLLSPPRSPALPPDPTARASLAASHSNLLLGPGGPPTPLRGLPPPSSLHAHHHHALHGSPQPAWMSDAGGGGGTLARRPPFQRQGTLEQLQFIPGHHLPQHLRTASKNEVTV", "length": 538 }, "evidence": [ { "id": "A0A287ACI3", "url": "https://omabrowser.org/oma/group/A0A287ACI3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8C3Q5-1", "protein_name": "Protein shisa-7", "gene_name": "Shisa7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPALLLLGTVALLASAAGPAGARPSNDTSSVAPGPLPALLAHLRRLTGALAGGGSAAGTSANATKTSPASGTGAAARAPPPAELCHGYYDVMGQYDATFNCSTGSYRFCCGTCHYRFCCEHRHMRLAQASCSNYDTPRWATTPPPLAGGAGGAGGAGGGPGPGQAGWLEGGRAGGAGGRGGEGPGGSTAYVVCGVISFALAVGVGAKVAFSKASRAPRAHREINVPRALVDILRHQAGPATRPDRARSSSLTPGLGGPDSMAPRTPKNLYNTMKPSNLDNLHYNVNSPKHHAATLDWRAMPPPSPSLHYSTLSCSRSFHNLSHLPPSYEAAVKSELNRYSSLKRLAEKDLDEAYLKRRQLEMPRGTLPLHALRRPGTGGGYRMDGWGGPEELGLAPAPNPRRVMSQEHLLGDGSRASRYEFTLPRARLVSQEHLLLSSPEALRQSREHLLSPPRSPALPPDPTTRASLAASHSNLLLGPGGPPTPLHGLPPSGLHAHHHHALHGSPQPAWMSDAGGGGGTLARRPPFQRQGTLEQLQFIPGHHLPQHLRTASKNEVTV", "length": 558 }, "evidence": [ { "id": "A0A287ACI3", "url": "https://omabrowser.org/oma/group/A0A287ACI3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "gamma-aminobutyric acid receptor clustering", "id": "GO:0097112", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097112", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ], "pmid": "" }, { "name": "regulation of AMPA glutamate receptor clustering", "id": "GO:1904717", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904717", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ], "pmid": "" }, { "name": "memory", "id": "GO:0007613", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007613", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ], "pmid": "" }, { "name": "positive regulation of long-term synaptic potentiation", "id": "GO:1900273", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900273", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ], "pmid": "" }, { "name": "gamma-aminobutyric acid signaling pathway", "id": "GO:0007214", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007214", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ], "pmid": "" }, { "name": "asymmetric, glutamatergic, excitatory synapse", "id": "GO:0098985", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098985", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ], "pmid": "" }, { "name": "postsynaptic specialization membrane", "id": "GO:0099634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099634", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ], "pmid": "" }, { "name": "postsynaptic membrane", "id": "GO:0045211", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045211", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ], "pmid": "" }, { "name": "dendritic spine membrane", "id": "GO:0032591", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032591", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GABA receptor binding", "id": "GO:0050811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050811", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ], "pmid": "" }, { "name": "ionotropic glutamate receptor binding", "id": "GO:0035255", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035255", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ACI3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 542, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ACI3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ACI3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ACI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI3" }, { "id": "PF13908", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13908" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Shisa N-terminal", "eco_id": "ECO_0000259", "start_pos": 83, "end_pos": 133, "start_aa": "Glu", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 }, { "start_pos": 26, "end_pos": 28 }, { "start_pos": 303, "end_pos": 305 }, { "start_pos": 62, "end_pos": 64 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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] }, { "uniprot_canonical_ac": "A0A287A718-1", "uniprot_ac": "A0A287A718", "uniprot_id": "A0A287A718_PIG", "mass": { "chemical_mass": 121858.0, "monoisotopic_mass": 121858.0 }, "refseq": { "ac": "NP_001254623", "name": "ceruloplasmin precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001254623" }, "gene_names": [ { "name": "CP", "type": "recommended", "evidence": [ { "id": "A0A287A718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A718" } ] }, { "name": "CP", "type": "synonym", "evidence": [ { "id": "NP_001254623", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001254623" } ] } ], "protein_names": [ { "name": "Ceruloplasmin", "type": "recommended", "evidence": [ { "id": "A0A287A718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#names_and_taxonomy" } ] }, { "name": "1.11.1.27", "type": "synonym", "evidence": [ { "id": "A0A287A718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#names_and_taxonomy" } ] }, { "name": "1.11.1.9", "type": "synonym", "evidence": [ { "id": "A0A287A718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#names_and_taxonomy" } ] }, { "name": "1.16.3.1", "type": "synonym", "evidence": [ { "id": "A0A287A718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#names_and_taxonomy" } ] }, { "name": "1.16.3.4", "type": "synonym", "evidence": [ { "id": "A0A287A718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#names_and_taxonomy" } ] }, { "name": "Cuproxidase ceruloplasmin", "type": "synonym", "evidence": [ { "id": "A0A287A718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#names_and_taxonomy" } ] }, { "name": "Ferroxidase ceruloplasmin", "type": "synonym", "evidence": [ { "id": "A0A287A718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#names_and_taxonomy" } ] }, { "name": "Glutathione peroxidase ceruloplasmin", "type": "synonym", "evidence": [ { "id": "A0A287A718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#names_and_taxonomy" } ] }, { "name": "Glutathione-dependent peroxiredoxin ceruloplasmin", "type": "synonym", "evidence": [ { "id": "A0A287A718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#names_and_taxonomy" } ] }, { "name": "ceruloplasmin precursor", "type": "synonym", "evidence": [ { "id": "NP_001254623", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001254623" } ] } ], "function": [ { "annotation": "Multifunctional blue, copper-binding (6-7 atoms per molecule) glycoprotein. It has ferroxidase activity oxidizing Fe(2+) to Fe(3+) without releasing radical oxygen species. It is involved in iron transport across the cell membrane. Copper ions provide a large number of enzymatic activites. Oxidizes highly toxic ferrous ions to the ferric state for further incorporation onto apo-transferrins, catalyzes Cu(+) oxidation and promotes the oxidation of biogenic amines such as norepinephrin and serotonin. Provides Cu(2+) ions for the ascorbate-mediated deaminase degradation of the heparan sulfate chains of GPC1. Has glutathione peroxidase-like activity, can remove both hydrogen peroxide and lipid hydroperoxide in the presence of thiols. 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"MKIFLLGIFLILCGTSARAKDKHYYIGIVETTWDYASDRGEKKLISVDKEQSNIYLQNGPNRIGRLYKKAIYLQYTDETFRTIIEKPVWLGFLGPIIKAETGDRVYVHFKNFASRPYTFHAHGMTYYKEHEGAIYPDNTTDFQKADDKVHPGEQYTYILHANPEQGPGKEDSNCVTRIYHSHIDAPKDIASGLIGPLIHCRKDSLDKEKEKNIDQEFVVMFSVVDENLSWYLEDNIKTYCSEPEKVEPDNEDFKESNRMYSVNGYSFGSLPGLSMCAEDRVKWYLFGMGNEIDVHAAFFHGQVLTNKNYRIDTINLFPATLFDAFMVAQNPGEWMLSCQNLNHLKAGLQAFFRVQDCKKTSSEDAIHGKHVRHYYIAAEEIIWNYAPSGIDTFTKENLTAPGSASEVFFTRGSTRIGGSYKKLVYREYKDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFRNKGAYPLSIEPTGVRVSKSQEGTYYASHYISSSENVPPSASHVAPKETFTYEWTVPKEVGPTYKDPVCLTKMYYSAVDPTKDIFTGLIGPMKICKKGSLLANGRLKDVDKEFYLFPTVFDENESLLLDDNIQMFTTEPNKVDKENEDFQESNKMHSMNGFMYGNQPGLNMCQGDSVVWYLFSAGNEVDVHGIYFSGNTYLSRGERRDTANLFPQTSLRLFMQPDTAGTFDVECLTTDHYTGGMKQKYTVNQCKQLNENSYLYLGERTYYIAAVEVEWDYSPSREWEKELHHSQERNVSNAFLDKGEFYIGSKYKKVVYRQFTDSTFQVPVQRKAKEEHLGILGPQLHADVGDKVNIVFKNTATRPYSIHAHGVKTESPTVIPTVPGETRTYVWKIPERSGAGIDDSPCIPWVYYSTVDQVKDLYSGLIGPLIVCRKPYLKVFNPIKNLEFSLLFLVFDENESWYLDDNIKTYSDHPEKVDKANDEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYQHRGIYTSDVFDIFPGTYQTLEMFPKTSGTWLLHCHVTDHIHAGMETTYTVLPNEETKSG", "length": 1065, "header": "tr|A0A287A718-1|A0A287A718_PIG Isoform 1 of Ceruloplasmin OS=Sus scrofa OX=9823 GN=CP PE=1 SV=2 CANONICAL=A0A287A718-1" }, "locus": { "chromosome": "13", "start_pos": 89463185, "end_pos": 89410306, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059761.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059761.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039562.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039562.2" } ] } }, { "isoform_ac": "A0A4X1T0M7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#A0A4X1T0M7-1", "sequence": { "sequence": "MKIFLLGIFLILCGTSARAKDKHYYIGIVETTWDYASDRGEKKLISVDKEQSNIYLQNGPNRIGRLYKKAIYLQYTDETFRTIIEKPVWLGFLGPIIKAETGDRVYVHFKNFASRPYTFHAHGMTYYKEHEGAIYPDNTTDFQKADDKVHPGEQYTYILHANPEQGPGKEDSNCVTRIYHSHIDAPKDIASGLIGPLIHCRKDSLDKEKEKNIDQEFVVMFSVVDENLSWYLEDNIKTYCSEPEKVEPDNEDFKESNRMYSVNGYSFGSLPGLSMCAEDRVKWYLFGMGNEIDVHAAFFHGQVLTNKNYRIDTINLFPATLFDAFMVAQNPGEWMLSCQNLNHLKAGLQAFFRVQDCKKTSSEDAIHGKHVRHYYIAAEEIIWNYAPSGIDTFTKENLTAPGSASEVFFTRGSTRIGGSYKKLVYREYKDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFRNKGAYPLSIEPTGVRVSKSQEGTYYASHYISSSENVPPSASHVAPKETFTYEWTVPKEVGPTYKDPVCLTKMYYSAVDPTKDIFTGLIGPMKICKKGSLLANGRLKDVDKEFYLFPTVFDENESLLLDDNIQMFTTEPNKVDKENEDFQESNKMHSMNGFMYGNQPGLNMCQGDSVVWYLFSAGNEVDVHGIYFSGNTYLSRGERRDTANLFPQTSLRLFMQPDTAGTFDVECLTTDHYTGGMKQKYTVNQCKQLNENSYLYLGERTYYIAAVEVEWDYSPSREWEKELHHSQERNVSNAFLDKGEFYIGSKYKKVVYRQFTDSTFQVPVQRKAKEEHLGILGPQLHADVGDKVNIVFKNTATRPYSIHAHGVKTESPTVIPTVPGETRTYVWKIPERSGAGIDDSPCIPWVYYSTVDQVKDLYSGLIGPLIVCRKPYLKVFNPIKNLEFSLLFLVFDENESWYLDDNIKTYSDHPEKVDKANDEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYQHRGIYTSDVFDIFPGTYQTLEMFPKTSGTWLLHCHVTDHIHAGMETTYTVLPNEGSTWYRRKGSPKPSNNQYNFK", "length": 1081, "header": "tr|A0A4X1T0M7-1|A0A4X1T0M7_PIG Computationally mapped isoform of Ceruloplasmin OS=Sus scrofa OX=9823 GN=CP PE=1 SV=1 CANONICAL=A0A287A718-1" }, "locus": { "chromosome": "13", "start_pos": 89463185, "end_pos": 89413135, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012809.6", "url": "https://www.ensembl.org/id/ENSSSCT00000012809.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012471.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012471.4" } ] } }, { "isoform_ac": "A0A4X1T248-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#A0A4X1T248-1", "sequence": { "sequence": "MKIFLLGIFLILCGTSARAKDKHYYIGIVETTWDYASDRGEKKLISVDKEQSNIYLQNGPNRIGRLYKKAIYLQYTDETFRTIIEKPVWLGFLGPIIKAETGDRVYVHFKNFASRPYTFHAHGMTYYKEHEGAIYPDNTTDFQKADDKVHPGEQYTYILHANPEQGPGKEDSNCVTRIYHSHIDAPKDIASGLIGPLIHCRKDSLDKEKEKNIDQEFVVMFSVVDENLSWYLEDNIKTYCSEPEKVEPDNEDFKESNRMYSVNGYSFGSLPGLSMCAEDRVKWYLFGMGNEIDVHAAFFHGQVLTNKNYRIDTINLFPATLFDAFMVAQNPGEWMLSCQNLNHLKAGLQAFFRVQDCKKTSSEDAIHGKHVRHYYIAAEEIIWNYAPSGIDTFTKENLTAPGSASEVFFTRGSTRIGGSYKKLVYREYKDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFRNKGAYPLSIEPTGVRVSKSQEGTYYASHYISSSEMFDENESLLLDDNIQMFTTEPNKVDKENEDFQESNKMHSMNGFMYGNQPGLNMCQGDSVVWYLFSAGNEVDVHGIYFSGNTYLSRGERRDTANLFPQTSLRLFMQPDTAGTFDVECLTTDHYTGGMKQKYTVNQCKQLNENSYLYLGERTYYIAAVEVEWDYSPSREWEKELHHSQERNVSNAFLDKGEFYIGSKYKKVVYRQFTDSTFQVPVQRKAKEEHLGILGPQLHADVGDKVNIVFKNTATRPYSIHAHGVKTESPTVIPTVPGETRTYVWKIPERSGAGIDDSPCIPWVYYSTVDQVKDLYSGLIGPLIVCRKPYLKVFNPIKNLEFSLLFLVFDENESWYLDDNIKTYSDHPEKVDKANDEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYQHRGIYTSDVFDIFPGTYQTLEMFPKTSGTWLLHCHVTDHIHAGMETTYTVLPNEETKSG", "length": 982, "header": "tr|A0A4X1T248-1|A0A4X1T248_PIG Computationally mapped isoform of ferroxidase OS=Sus scrofa OX=9823 GN=CP PE=1 SV=1 CANONICAL=A0A287A718-1" }, "locus": { "chromosome": "13", "start_pos": 89463185, "end_pos": 89410306, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033091.3", "url": "https://www.ensembl.org/id/ENSSSCT00000033091.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030086.2", "url": "https://www.ensembl.org/id/ENSSSCP00000030086.2" } ] } }, { "isoform_ac": "A0A5G2QW05-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#A0A5G2QW05-1", "sequence": { "sequence": "MKIFLLGIFLILCGTSARAKDKHYYIGIVETTWDYASDRGEKKLISVDKEQSNIYLQNGPNRIGRLYKKAIYLQYTDETFRTIIEKPVWLGFLGPIIKAETGDRVYVHFKNFASRPYTFHAHGMTYYKEHEGAIYPDNTTDFQKADDKVHPGEQYTYILHANPEQGPGKEDSNCVTRIYHSHIDAPKDIASGLIGPLIHCRKDSLDKEKEKNIDQEFVVMFSVVDENLSWYLEDNIKTYCSEPEKVEPDNEDFKESNRMYSVNGYSFGSLPGLSMCAEDRVKWYLFGMGNEIDVHAAFFHGQVLTNKNYRIDTINLFPATLFDAFMVAQNPGEWMLSCQNLNHLKAGLQAFFRVQDCKKTSSEDAIHGKHVRHYYIAAEEIIWNYAPSGIDTFTKENLTAPGSASEVFFTRGSTRIGGSYKKLVYREYKDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFRNKGAYPLSIEPTGVRVSKSQEGTYYASHYISSSENVPPSASHVAPKETFTYEWTVPKEVGPTYKDPVCLTKMYYSAVDPTKDIFTGLIGPMKICKKGSLLANGRLKDVDKEFYLFPTVFDENESLLLDDNIQMFTTEPNKVDKENEDFQESNKMHSMNGFMYGNQPGLNMCQGDSVVWYLFSAGNEVDVHGIYFSGNTYLSRGERRDTANLFPQTSLRLFMQPDTAGTFDVECLTTDHYTGGMKQKYTVNQCKQLNENSYLYLGERTYYIAAVEVEWDYSPSREWEKELHHSQERNVSNAFLDKGEFYIGSKYKKVVYRQFTDSTFQVPVQRKAKEEHLGILGPQLHADVGDKVNIVFKNTATRPYSIHAHGVKTESPTVIPTVPGETRTYVWKIPERSGAGIDDSPCIPWVYYSTVDQVKDLYSGLIGPLIVCRKPYLKVFNPIKNLEFSLLFLVFDENESWYLDDNIKTYSDHPEKVDKANDEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYQVRPLMVVILCFENAFFLPLELM", "length": 1028, "header": "tr|A0A5G2QW05-1|A0A287A718_PIG Computationally mapped isoform of Ceruloplasmin OS=Sus scrofa OX=9823 GN=CP PE=1 SV=1 CANONICAL=A0A287A718-1" }, "locus": { "chromosome": "13", "start_pos": 89463185, "end_pos": 89414285, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081363.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081363.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069129.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069129.1" } ] } }, { "isoform_ac": "A0A8D0YRD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#A0A8D0YRD9-1", "sequence": { "sequence": "MKIFLLGIFLILCGTSARAKDKHYYIGIVETTWDYASDRGEKKLISVDKEQSNIYLQNGPNRIGRLYKKAIYLQYTDETFRTIIEKPVWLGFLGPIIKAETGDRVYVHFKNFASRPYTFHAHGMTYYKEHEGAIYPDNTTDFQKADDKVHPGEQYTYILHANPEQGPGKEDSNCVTRIYHSHIDAPKDIASGLIGPLIHCRKDSLDKEKEKNIDQEFVVMFSVVDENLSWYLEDNIKTYCSEPEKVEPDNEDFKESNRMYSVNGYSFGSLPGLSMCAEDRVKWYLFGMGNEIDVHAAFFHGQVLTNKNYRIDTINLFPATLFDAFMVAQNPGEWMLSCQNLNHLKAGLQAFFRVQDCKKTSSEDAIHGKHVRHYYIAAEEIIWNYAPSGIDTFTKENLTAPGSASEVFFTRGSTRIGGSYKKLVYREYKDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFRNKGAYPLSIEPTGVRVSKSQEGTYYASHYISSSENVPPSASHVAPKETFTYEWTVPKEVGPTYKDPVCLTKMYYSAVDPTKDIFTGLIGPMKICKKGSLLANGRLKDVDKEFYLFPTVFDENESLLLDDNIQMFTTEPNKVDKENEDFQESNKMHSMNGFMYGNQPGLNMCQGDSVVWYLFSAGNEVDVHGIYFSGNTYLSRGERRDTANLFPQTSLRLFMQPDTAGTFDVECLTTDHYTGGMKQKYTVNQCKQLNENSYLYLGERTYYIAAVEVEWDYSPSREWEKELHHSQERNVSNAFLDKGEFYIGSKYKKVVYRQFTDSTFQVPVQRKAKEEHLGILGPQLHADVGDKVNIVFKNTATRPYSIHAHGVKTESPTVIPTVPGETRTYVWKIPERSGAGIDDSPCIPWVYYSTVDQVKDLYSGLIGPLIVCRKPYLKVFNPIKNLEFSLLFLVFDENESWYLDDNIKTYSDHPEKVDKANDEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYQHRGIYTSDVFDIFPGTYQTLEMFPKTSGTWLLHCHVTDHIHAGMETTYTVLPNEAGTNNGTSSL", "length": 1070, "header": "tr|A0A8D0YRD9-1|A0A287A718_PIG Computationally mapped isoform of Ceruloplasmin OS=Sus scrofa OX=9823 GN=CP PE=1 SV=1 CANONICAL=A0A287A718-1" }, "locus": { "chromosome": "13", "start_pos": 89463185, "end_pos": 89413335, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000034342.4", "url": "https://www.ensembl.org/id/ENSSSCT00000034342.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029247.3", "url": "https://www.ensembl.org/id/ENSSSCP00000029247.3" } ] } }, { "isoform_ac": "A0A8D1LFT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A718/entry#A0A8D1LFT0-1", "sequence": { "sequence": "MKIFLLGIFLILCGTSARAKDKHYYIGIVETTWDYASDRGEKKLISVDKEQSNIYLQNGPNRIGRLYKKAIYLQYTDETFRTIIEKPVWLGFLGPIIKAETGDRVYVHFKNFASRPYTFHAHGMTYYKEHEGAIYPDNTTDFQKADDKVHPGEQYTYILHANPEQGPGKEDSNCVTRIYHSHIDAPKDIASGLIGPLIHCRKDSLDKEKEKNIDQEFVVMFSVVDENLSWYLEDNIKTYCSEPEKVEPDNEDFKESNRMYSVNGYSFGSLPGLSMCAEDRVKWYLFGMGNEIDVHAAFFHGQVLTNKNYRIDTINLFPATLFDAFMVAQNPGEWMLSCQNLNHLKAGLQAFFRVQDCKKTSSEDAIHGKHVRHYYIAAEEIIWNYAPSGIDTFTKENLTAPGSASEVFFTRGSTRIGGSYKKLVYREYKDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFRNKGAYPLSIEPTGVRVSKSQEGTYYASHYISSSENVPPSASHVAPKETFTYEWTVPKEVGPTYKDPVCLTKMYYSAVDPTKDIFTGLIGPMKICKKGSLLANGRLKDVDKEFYLFPTVFDENESLLLDDNIQMFTTEPNKVDKENEDFQESNKMHSMNGFMYGNQPGLNMCQGDSVVWYLFSAGNEVDVHGIYFSGNTYLSRGERRDTANLFPQTSLRLFMQPDTAGTFDVECLTTDHYTGGMKQKYTVNQCKQLNENSYLYLGERTYYIAAVEVEWDYSPSREWEKELHHSQERNVSNAFLDKGEFYIGSKYKKVVYRQFTDSTFQVPVQRKAKEEHLGILGPQLHADVGDKVNIVFKNTATRPYSIHAHGVKTESPTVIPTVPGETRTYVWKIPERSGAGIDDSPCIPWVYYSTVDQVKDLYSGLIGPLIVCRKPYLKVFNPIKNLEFSLLFLVFDENESWYLDDNIKTYSDHPEKVDKANDEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYQHRGIYTSDVFDIFPGTYQTLEMFPKTSGTWLLHCHVTDHIHAGMETTYTVLPNEASSQTQRRIWNMNYPFTVSIIILLQISTKEWLGE", "length": 1094, "header": "tr|A0A8D1LFT0-1|A0A287A718_PIG Computationally mapped isoform of Ceruloplasmin OS=Sus scrofa OX=9823 GN=CP PE=1 SV=1 CANONICAL=A0A287A718-1" }, "locus": { "chromosome": "13", "start_pos": 89463185, "end_pos": 89402538, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035369.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035369.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028410.3", "url": "https://www.ensembl.org/id/ENSSSCP00000028410.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW05" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:406870", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:406870", "resource": "KEGG Pathway" }, { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" }, { "id": "R-SSC-425410", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-425410", "resource": "Reactome", "description": "Metal ion SLC transporters" }, { "id": "R-SSC-8957275", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "resource": "Reactome", "description": "Post-translational protein phosphorylation" }, { "id": "R-SSC-917937", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-917937", "resource": "Reactome", "description": "Iron uptake and transport" } ], "orthologs": [ { "uniprot_canonical_ac": "P00450-1", "protein_name": "Ceruloplasmin", "gene_name": "CP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKILILGIFLFLCSTPAWAKEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKDNIRGKHVRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSYKKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVEPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQTESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRPYLKVFNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNEDTKSG", "length": 1065 }, "evidence": [ { "id": "A0A287A718", "url": "https://omabrowser.org/oma/group/A0A287A718/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P13635-1", "protein_name": "Ceruloplasmin", "gene_name": "Cp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKFLLLSALLFLHSSLAWTREKHYYIGITEAVWDYASGSEEKELISVDTEQSNFYLRNGPDRIGRKYKKALYSEYTDGTFTKTIDKPAWLGFLGPVIKAEVGDKVSVHVKNFASRPYTFHAHGVTYTKANEGAIYPDNTTDFQRADDKLFPGQQYLYVLRANEPSPGEGDSNCVTRIYHSHVDAPKDIASGLIGPLILCKKGSLHKEKEENIDQEFVLMFSVVDENLSWYLEDNIKTFCSEPEKVDKDNEDFQESNRMYSINGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHSELFHGQALTSKNYHTDIINLFPATLIDVSMVAQNPGVWMLSCQNLNHLKAGLQAFFQVRDCNKPSPDDDIQDRHVRHYYIAAEETIWDYAPSGTDTFTGENFTSLGSDSRVFFEQGATRIGGSYKKLVYREYTDDSFTNRKERGPDEEHLGILGPVIWAEVGDIIRVTFHNKGQFPLSIQPMGVRFTKENEGTYYGPDGRSSKQASHVAPKETFTYEWTVPKEMGPTYADPVCLSKMYYSGVDLTKDIFTGLIGPMKICKKGSLLADGRQKDVDKEFYLFATVFDENESLLLDDNIRMFTTAPENVDKEDEDFQESNKMHSMNGFMYGNLPGLNMCLGESIVWYLFSAGNEADVHGIYFSGNTYLSKGERRDTANLFPHKSLTLLMTPDTEGSFDVECLTTDHYTGGMKQKYTVNQCKGQFEDVTLYQGERTYYIAAVEVEWDYSPSRDWEMELHHLQEQNVSNAFLDKEEFFIGSKYKKVVYREFTDSTFREQVKRRAEEEHLGMLGPLIHADVGAKVKVVFKNMATRPYSIHAHGVKTKSSTVAPTLPGEVRTYIWQIPERSGAGTEDSPCIPWAYYSTVDRVKDLYSGLIGPLIVCRKSYVKVFNPKKKMEFSLLFLVFDENESWYLDDNINTYPDHPEKDNKDNEEFIESNKMHAINGKMFGNLQGLTMHVGDEVNWYVMAMGNEIDLHTVHFHGHSFQYKHRGIHSSDVFDFFPGTYQTLEMFPQTPGTWLLHCHVTDHIHAGMVTTYTVLPNQETKSG", "length": 1059 }, "evidence": [ { "id": "A0A287A718", "url": "https://omabrowser.org/oma/group/A0A287A718/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q61147-1", "protein_name": "Ceruloplasmin", "gene_name": "Cp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"length": 1061 }, "evidence": [ { "id": "A0A287A718", "url": "https://omabrowser.org/oma/group/A0A287A718/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A287A718", "url": "https://www.uniprot.org/uniprotkb/A0A287A718" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287A718", "url": "https://www.uniprot.org/uniprotkb/A0A287A718" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "copper ion binding", "id": "GO:0005507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005507", "evidence": [ { "database": "UniProtKB", "id": "A0A287A718", "url": "https://www.uniprot.org/uniprotkb/A0A287A718" } ], "pmid": "" }, { "name": "ferroxidase activity", "id": "GO:0004322", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004322", "evidence": [ { "database": "UniProtKB", "id": "A0A287A718", "url": "https://www.uniprot.org/uniprotkb/A0A287A718" } ], "pmid": "" }, { "name": "glutathione peroxidase activity", "id": "GO:0004602", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004602", "evidence": [ { "database": "UniProtKB", "id": "A0A287A718", "url": "https://www.uniprot.org/uniprotkb/A0A287A718" } ], "pmid": "" }, { "name": "protein-folding chaperone binding", "id": "GO:0051087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051087", "evidence": [ { "database": "UniProtKB", "id": "A0A287A718", "url": "https://www.uniprot.org/uniprotkb/A0A287A718" } ], "pmid": "" }, { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "A0A287A718", "url": "https://www.uniprot.org/uniprotkb/A0A287A718" } ], "pmid": "" }, { "name": "phospholipid-hydroperoxide glutathione peroxidase activity", "id": "GO:0047066", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047066", "evidence": [ { "database": "UniProtKB", "id": "A0A287A718", "url": "https://www.uniprot.org/uniprotkb/A0A287A718" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular copper ion homeostasis", "id": "GO:0006878", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006878", "evidence": [ { "database": "UniProtKB", "id": "A0A287A718", "url": "https://www.uniprot.org/uniprotkb/A0A287A718" } ], "pmid": "" }, { "name": "intracellular iron ion homeostasis", "id": "GO:0006879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006879", "evidence": [ { "database": "UniProtKB", "id": "A0A287A718", "url": "https://www.uniprot.org/uniprotkb/A0A287A718" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 138, "end_pos": 140, "annotation": "n_glycosylation_sequon" }, { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" }, { "start_pos": 397, "end_pos": 399, "annotation": "n_glycosylation_sequon" }, { "start_pos": 588, "end_pos": 590, "annotation": "n_glycosylation_sequon" }, { "start_pos": 762, "end_pos": 764, "annotation": "n_glycosylation_sequon" }, { "start_pos": 926, "end_pos": 928, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "11148", "name": "", "equation": "4 Fe(2+) + O2 + 4 H(+) = 4 Fe(3+) + 2 H2O", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "11148", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/11148" } ] }, { "id": "16833", "name": "", "equation": "2 glutathione + H2O2 = glutathione disulfide + 2 H2O", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16833", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16833" } ] }, { "id": "30083", "name": "", "equation": "4 Cu(+) + O2 + 4 H(+) = 4 Cu(2+) + 2 H2O", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "30083", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/30083" } ] }, { "id": "62632", "name": "", "equation": "a hydroperoxide + 2 glutathione = an alcohol + glutathione disulfide + H2O", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "62632", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/62632" } ] }, { "id": "78539", "name": "", "equation": "4 nitric oxide + O2 + 2 H2O = 4 nitrite + 4 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "78539", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/78539" } ] }, { "id": "R-SSC-8952289", "name": "FAM20C phosphorylates FAM20C substrates", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum lumen", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8952289", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8952289" } ] }, { "id": "R-SSC-904830", "name": "SLC40A1:CP:6Cu2+ transports Fe2+ from cytosol to extracellular region", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-904830", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-904830" } ] }, { "id": "R-SSC-917891", "name": "SLC40A1:CP:6Cu2+ oxidises Fe2+ to Fe3+", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "external side of plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-917891", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-917891" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A718", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A718" }, { "id": "PF07732", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07732" }, { "id": "PF00394", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00394" }, { "id": "PF07731", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07731" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Plastocyanin-like", "eco_id": "ECO_0000259", 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"Other" ] }, { "id": "PF02140", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02140", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08016", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08016", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20519", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20519", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A9Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Y8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Y8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG23", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG23-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG23-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 992, "header": "tr|A0A287A9Y8-1|A0A287A9Y8_PIG Isoform 1 of Polycystin 1 like 2 OS=Sus scrofa OX=9823 GN=PKD1L2 PE=3 SV=3 CANONICAL=A0A287A9Y8-1" }, "locus": { "chromosome": "6", "start_pos": 7110807, "end_pos": 7066912, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045608.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045608.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040754.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040754.3" } ] } }, { "isoform_ac": "A0A8W4FG23-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Y8/entry#A0A8W4FG23-1", "sequence": { "sequence": "MSALTLILVGFALRFRAITAKPEHDNSCSENQVGFRDACYEFVPLGRTFYGAQSWCEGQGGHLVFIRDESTQQFLQKHISQDREWWIGLTGNLAQKATTQGPAIWLDTSNVSYSHWRQGQDASAPKLCGYMGRDTSFGWVASDNCTQEFAFICEFGVGQTLACEGLNATMHCGSGDVIQIQDAFYGRQTPHYCTKDAGHPSYLEEACSWVSVKDEVAGQCQGLQACQVAADGTYFGDLCPGRGSYLWVQHQCREGLHLTVSNESFTFDNVTVSLTWLLSPYIGNLSCIINMGDGHTFDPYYPPSLSSSVSHQFTAPGEFTVFAECTTSEWHVTAQKQVTMRDRMERLRVTGCSGLCTSGTSPLCQAVFGDPLWIQVELDGGTGVTYTVLSGNTSLAEFTTQRGPLPCNLTLDRTVQQQTGPGMHQLEIRATSNTTASAPSRNITVHFVEPLSGLQASWASDHLELGQDLLVNVSVAHGIPEGLTFEVAGLGATFSHEEESLGGPFGTYRVAVPREGTFLVTVLVRNAFSNLSLEIGSITVTGKNFLPLGVGSDADSYYSQLYVEPGRYLDPFTTVTLGWPDSDKDLRFQWSCGRCWAQWIDCVERQLLHIDQRELVVPSSCLPPPDSAVTLRLEVWRGQELENLEEECLYISAPLQLRPRVSCEKNCGPVNAGGDVRLKVTLGDDSAAAVFSWYLDETPLEKAEPLPEACRLRGFWPRSLLLLERNTSTLLLKGSFLKTRGQAARIRVTAVAGHAYGEDTFVISSLPPPEAPTCTIAPQEGTVLTSFAIFCNASAAPGPLEYCFCLESGSCLYCGPDSALPSVYLPLGKESNDFVLTVVISVSNREGDRQQTHAVVKVGREDTRVEDEAFQAAVWDTVTAALQGGQGPEQLFQLARSVSSLLDQQCQGPGSGRPQRVDARQKVRERILGSLAVASATLGDMPRVQELAEVLKEVTQRSEELTPSAQREASWALQHASEALLAVSAKAHPEDQRRQAATRDLFQAVGSVLEASLRDRAEEPAKANGSQVVTVSQLLRAVERVQDTLLLGRLPGGLPTTLATPSISVYTNRILPQGWRGSSVHVAAASSATFTLPAAPSLGSMEDSREPVDIRMMSFPKSPFPARSPLDVSGTIGGLSLTSPSGQLIPVKNLSENIEILLPQLSEGHGKPTVLNLTSPEALRVNLTSRGVALGIQLHWRPDIPLMLSLGYGYHPNETSYDAKAHFPPMAASGNGLSTWILSPDDLYFGEGIYYLAVIPESDLEPAPGRDLSVGITTFLSHCVFWDEVQGTWDNSGCGATDHPSQTHCLCNHLTFFGSTFLVMPNAVDIRQTADLFATFEDNPVVVTTVGCLCVAYVLVVIWARRKDAQDQAKVKVTVLEDNDPFAEYHYLVTVYTGHRRGAATSSKVTVTLYGLDGESEPHHLSDPDIPVFERGGVDVFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVHDLAMDRKWYFLCNSWLSIDIGDCVLDKIFPVATEQDRKQFSHLFFMKTSMGFQDGHIWYSIFSSSARSNFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKMDLGKIEFTWQEAMIGLESSLLMFPINLLIVQIFRNTRPRRTKKQSTGRWAGGPLGPAPSLQPMEDGLPTPRLGFKSGLVSSLFKALKVPPPGSCWDSGDSMDINQLLALVEDVVCRQHKPGQVFWEEAGQRGSPLTHALGSAQAKGSQWHPHEAWKDLAYRQCLYLQLEHVEQELLLVGTRGYSQCQSHTQALRQLQTLKATWGNSSLQASKPPRGLPWWCVLVGWLLVAATSGVSAFFTMLYGLHYGRASSLKWLISMAVSFVESVFVTQPLKVLGFAAFFALVLKRVEDEEEPVAPLPGRLSSPGNDLRCSEPCAFPFPALGLVGLGPLPDQGCLSLPAYVGFLWMLLLVAYGQRDPSAYHLNRHLEHSFTQGLSAVLGFQEFFTWANTTLLSNLYGHHPGFITDGNSKLVGSAQIRQVRVQESSCPLAQQLQASLDGCRAPYSLDVEDLSDYGEGWNASIFNKSNGFPQAWQYRSQSQRRGHPIWGKLTVYRGGGYVVPLGTDRQSASRTLQYLFDNTWLDSLTRAAFVEFTVYNANVNLFCIVTLTLETSALGTFFAHAHLQSLRLYPFTDGWHPFVVAAEIVYFLFLLYYMIVQGKLMRKQKWCYFCSKWNLLELAIILASWSALALFVKRAILAERDIQHYRKHREEGISFSETAAADAVLGYIIAFLVLLSTVKLWHLLRLNPKMNMITSALRRAWGDISGFIIIILIMLLAYSTASNLIFGWKLRSYKTLFDAAETMISLQLGIFNYEEVLDYSPVLGSFLIGSCIIFMTFVVLNLFISVILVAFNEEQKYYQLSEEGEIVDVLLMKILSFLGIKCKGQVPRSSSEQAERLSEAWPPQLESSVPQV", "length": 2431, "header": "tr|A0A8W4FG23-1|A0A287A9Y8_PIG Computationally mapped isoform of Polycystin 1 like 2 OS=Sus scrofa OX=9823 GN=PKD1L2 PE=3 SV=1 CANONICAL=A0A287A9Y8-1" }, "locus": { "chromosome": "6", "start_pos": 7166455, "end_pos": 7066912, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104761.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104761.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077268.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077268.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FG23", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG23" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Y8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Y8" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Y8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 269, "end_pos": 271, "annotation": "n_glycosylation_sequon" }, { "start_pos": 284, "end_pos": 286, "annotation": "n_glycosylation_sequon" }, { "start_pos": 392, "end_pos": 394, "annotation": 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"categories": [ "Protein" ] }, { "id": "A0A8D0TKL4", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TKL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0TKL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TKL4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGR8", "url": "https://www.uniprot.org/uniprotkb/F1SGR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGR8-1", "url": "https://www.uniprot.org/uniprotkb/F1SGR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRVLVGGGSGFIGTALTQMLKAKGHKVTLVSRKPGLDRITWDELASSGLPPCDAAVNLAGENILNPLRRWNEAFQKEVISSRLETTHMMATAIAKAPQPPQAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGGGAIGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILVHALEASHVQGVLNGVAPASATTNAEFARALGAALGRPAFIPFPSTVVRAIFGQERAIMLLEGQKVVPRRTLAAGYQYSFPELGVALKEIIA", "length": 294, "header": "tr|A0A287A9T9-1|A0A287A9T9_PIG Isoform 1 of Short chain dehydrogenase/reductase family 39U member 1 OS=Sus scrofa OX=9823 GN=SDR39U1 PE=1 SV=1 CANONICAL=A0A287A9T9-1" }, "isoforms": [ { "isoform_ac": "A0A287A9T9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9T9/entry#A0A287A9T9-1", "sequence": { "sequence": "MRVLVGGGSGFIGTALTQMLKAKGHKVTLVSRKPGLDRITWDELASSGLPPCDAAVNLAGENILNPLRRWNEAFQKEVISSRLETTHMMATAIAKAPQPPQAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGGGAIGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILVHALEASHVQGVLNGVAPASATTNAEFARALGAALGRPAFIPFPSTVVRAIFGQERAIMLLEGQKVVPRRTLAAGYQYSFPELGVALKEIIA", "length": 294, "header": "tr|A0A287A9T9-1|A0A287A9T9_PIG Isoform 1 of Short chain dehydrogenase/reductase family 39U member 1 OS=Sus scrofa OX=9823 GN=SDR39U1 PE=1 SV=1 CANONICAL=A0A287A9T9-1" }, "locus": { "chromosome": "7", "start_pos": 74853865, "end_pos": 74851229, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039179.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039179.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040584.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040584.1" } ] } }, { "isoform_ac": "A0A8D0TKL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9T9/entry#A0A8D0TKL4-1", "sequence": { "sequence": "MRVLVGGGSGFIGTALTQMLKAKGHKVTLVSRKPGLDRITWDELASSGLPPCDAAVNLAGENILNPLRRWNEAFQKEVISSRLETTHMMATAIAKAPQPPQAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVVVRSGENQRPGCQTGLECLLWAGRWGDVGIRELSLQKGPPLLANLQMGGWDIPKRTTPLTCYTARSTWGRSEEGEVERKNGAAWRLRALSVLLACSRGCAGPRGWRHRSHAAALPPGPGGPHWLRPPVLPLDSHWGLSWNPGPCP", "length": 298, "header": "tr|A0A8D0TKL4-1|A0A287A9T9_PIG Computationally mapped isoform of Short chain dehydrogenase/reductase family 39U member 1 OS=Sus scrofa OX=9823 GN=SDR39U1 PE=1 SV=1 CANONICAL=A0A287A9T9-1" }, "locus": { "chromosome": "7", "start_pos": 74853600, "end_pos": 74851229, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085514.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085514.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065516.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065516.1" } ] } }, { "isoform_ac": "F1SGR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9T9/entry#F1SGR8-1", "sequence": { "sequence": "MSWLPRGCPPAMPLSTWQEKTSSTPSEAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGGGAIGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILVHALEASHVQGVLNGVAPASATTNAEFARALGAALGRPAFIPFPSTVVRAIFGQERAIMLLEGQKVVPRRTLAAGYQYSFPELGVALKEIIA", "length": 212, "header": "tr|F1SGR8-1|A0A287A9T9_PIG Computationally mapped isoform of Short chain dehydrogenase/reductase family 39U member 1 OS=Sus scrofa OX=9823 GN=SDR39U1 PE=1 SV=3 CANONICAL=A0A287A9T9-1" }, "locus": { "chromosome": "7", "start_pos": 74853865, "end_pos": 74851739, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002219.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002219.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002167.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002167.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGR8", "url": "https://www.uniprot.org/uniprotkb/F1SGR8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152844", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152844", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZYY0-1", "protein_name": "Short chain dehydrogenase/reductase family 39U, member 1", "gene_name": "Sdr39u1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "GGGTGFIGTALTQLLKTKGHEVKLVSRQPGPDRITWTELSRSGLPLCDVVINLAGENILNPLRRWNETFQKEVLTSRLDTTHLLAKAITEAAQPPQAWILVTGVAYYQPSLTEEYDEDSPGGDFDFFSNLVTKWEAAARLPGESTRQVVVRSGVVLGRRGGAIGHMLLPFRLGLGGPIGSGHQFFPWIHISDLAGILNHALEANHVQGVLNGVAPASTTTNADFAQALGAALGRPAFIPVPSAVVQAIFGRERAIMLLEGQKVVPRRTLATGYQYSFPELGAALKDVVT", "length": 289 }, "evidence": [ { "id": "A0A287A9T9", "url": "https://omabrowser.org/oma/group/A0A287A9T9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54W18-1", "protein_name": "NAD-dependent epimerase/dehydratase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKRFAAVLIGVSITGLAIPNINFNNSINNNNNNNNKNTKISRMNQNQNQNQNVKKVLISGASGFIGNALTKTLTEGNDNNSNTDTKYEIYKLVRKTPTSMYEIEWNPDKQFIDKESLESLQPDVVIHLAGENILGIWTEEKKRKILESRTKGTTTLCEALSSISNPPKVFISASGCTYYGSNVYDPVDEYSPKGSGFFSDVVEKWEQSCDPLRKHNQQILNQNTNSTISSNGEVEVVAGGGVGGVGTQSVKPTRIVNLRIGLVMDKAGGLLGSMYYPFLFGLGGVIGSGKQYLPWISLRDAIGVIKFAIENEQVQGPINVVSINPATNYEFTKTLGTVLNRPTIFWIPETPLRYLLGKDMSEETVLSSQRVLPRKLLDYGFRFQDTNLTATLDRIVNDKK", "length": 400 }, "evidence": [ { "id": "A0A287A9T9", "url": "https://omabrowser.org/oma/group/A0A287A9T9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5M8N4-1", "protein_name": "Epimerase family protein SDR39U1", "gene_name": "Sdr39u1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRVLVGGGTGFIGTAVTQLLRGRGHEVKLVSRQPGPGRITWSELSESGLPLCDVVINLAGENILNPLRRWNETFQKEVLTSRLDTTHLLAKAITETAHPPQAWILVTGVAYYQPSLTKEYDEDSPGGNFDFFSNLVTKWEAAARLPGESTRQVVVRSGVVLGRGGGAISHMLLPFRLGLGGPIGSGRQFFPWIHIGDLAGILNYALEANHVQGVLNGVAPASTTTNAEFAQALGAALGRPAFIPVPSTVVRAVFGERAIMLLEGQKVVPRRTLATGYQYSFPELRAALKDVVA", "length": 293 }, "evidence": [ { "id": "A0A287A9T9", "url": "https://omabrowser.org/oma/group/A0A287A9T9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NRG7-2", "protein_name": "Epimerase family protein SDR39U1", "gene_name": "SDR39U1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAGENILNPLRRWNETFQKEVIGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGGGAMGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANHVHGVLNGVAPSSATNAEFAQTLGAALGRRAFIPLPSAVVQAVFGRQRAIMLLEGQKVIPQRTLATGYQYSFPELGAALKEIVA", "length": 293 }, "evidence": [ { "id": "A0A287A9T9", "url": "https://omabrowser.org/oma/group/A0A287A9T9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9SJU9-1", "protein_name": "Epimerase family protein SDR39U1 homolog, chloroplastic", "gene_name": "GC1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MELLCSPTSLSSSFALSSALLVPRSFSMPGTRRFMVLCSSQKESQMTVSVTGATGFIGRRLVQRLRADNHAIRVLTRSKSKAEQIFPAKDFPGIVIAEESEWKNCVQGSTAVVNLAGLPISTRWSPEIKKEIKGSRIRVTSKVVDLINNSPAEARPTVLVSATAVGYYGTSETGVFDENSPSGKDYLAEVCREWEGTALKANKDVRVALIRIGVVLGKDGGALAMMIPFFQMFAGGPLGSGQQWFSWIHVDDLVNLIYEALTNPSYKGVINGTAPNPVRLGEMCQQLGSVLSRPSWLPVPDFALKALLGEGATVVLEGQKVLPVRAKELGFEFKYKYVKDALRAIMQ", "length": 347 }, "evidence": [ { "id": "A0A287A9T9", "url": "https://omabrowser.org/oma/group/A0A287A9T9/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A9T9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 294, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A9T9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A9T9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A9T9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A9T9" }, { "id": "PF08338", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08338" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF1731", "eco_id": "ECO_0000259", "start_pos": 246, "end_pos": 292, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287A9T9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A9T9" }, { "id": "PF01370", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01370" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NAD-dependent epimerase/dehydratase", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 208, "start_aa": "Val", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AE44-1", "uniprot_ac": "A0A287AE44", "uniprot_id": "A0A287AE44_PIG", "mass": { "chemical_mass": 119264.0, "monoisotopic_mass": 119264.0 }, "refseq": { "ac": "XP_003358437", "name": "zinc finger protein 197 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358437" }, "gene_names": [ { "name": "ZNF197", "type": "recommended", "evidence": [ { "id": "A0A287AE44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AE44" } ] }, { "name": "ZNF197", "type": "synonym", "evidence": [ { "id": "XP_003358437", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358437" } ] } ], "protein_names": [ { "name": "Zinc finger protein 197", "type": "synonym", "evidence": [ { "id": "A0A287AE44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AE44/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 197 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003358437", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358437" } ] } ], "function": [ { "annotation": "May be 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"https://omabrowser.org/oma/group/ETTENRC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21557", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21557", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21557:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21557:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09469", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09469", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020931074", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931074", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZK31", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZK31-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A580", "url": "https://www.uniprot.org/uniprotkb/A0A287A580", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A580-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A580-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LHJ6", "url": "https://www.uniprot.org/uniprotkb/I3LHJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LHJ6-1", "url": "https://www.uniprot.org/uniprotkb/I3LHJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQAVTRRLGARARAAPSRAMDGGVPSAQDALAAPQPAAPAGRKPKAKAPLPPAETKYLDASSVDDSVESSAFIMEQKENMIDKDIELLVVLPGDIIKYTTVHGSKPMMDLLIFLCAKYHLNPSSHTIDLLSAEKNPIKFKPNTPIGMLEVEKVILKPKILDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHAPLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRELYAMDVSRATSVTAFNKSSLQESCQISQNLDIMKDKENKGFFSFFQRSKKKREQTASAPATPLVSKHRPTFPKYNTVSKQYISNTLPSDAPKKRRAPLPPMPGSQSAPQDLAHIQERPASCVVKSTSLDETDENSCGAGIVRTGSLQLSSRSTGNSSLKRTKRKAPSPPSKIALQQSDENSHVTALQSVPAVPPDSVLEANSSEGLSSPEVSLGPGLPRPEQGTVPELLAGAPLSERPATPEAAAASLPSGISSDYSLEEIDEKEELSEVPRDEAENTSLKSQDIPIGSSDIINTLKNDPDSALGSSTGKSSQNSKEEKQESRNTDGQGPHIMVYNASNEESIVDGVRNLMSLDPSQEKDQNEIIVIPTNTENNMENGVRTEINVGGIAKNNNVDMQVDRLPNYQAYKTDTARSYKENHLATSSAPDQKMSEPSTEKTKMQDAAIQTIPSCDSFDGNHQDHNLSDVKVDESVQTSGNNKSIQHSSLSPQDPIDTSGEFRSQAPLPTVYSEELLPRKDPICAHGNDDLLSPVDGTDKNSTASYIKNSPLYRQDYSPKPKPSNEITREYIPKIGMTTYKIVPPRSLEISKDWELETTGYKNDQEIKILGKKDTQENVKETAIQTEDLVISESLKEPREDLKPEPTLRTEHQVQREESCTRGTIVNPLKPTPRMTRDTGTAPFAPSLEDINNVLESKLKSRVSNPQTKPSSFFLQMQKRVSGHYVTSAAAKSVQAAPNPTPKELIKKEVESDTVPPPEPTLSPLSKSPPQPHIKNTDDDSIKKPTETSPPPLASPPPVAPKPVPLPTSQSAALNLKTLKTFGAPRPYSSSAPSPFALAVVKRSQSFSKGRTGLCNEEVDSASSPTPTDTQEGKIPSVNTFVDIPQLSVSRKENNSVHNEQNLQIPSPTDCPSFTLKRQSSSTFQSSDPEQIRQSLLTAIRSGEAAAKLKRVTVPSNTVSVNGRSRLSHSMSLDAQDGH", "length": 1215, "header": "tr|A0A287A580-1|A0A287A580_PIG Isoform 1 of Cordon-bleu WH2 repeat protein like 1 OS=Sus scrofa OX=9823 GN=COBLL1 PE=1 SV=1 CANONICAL=A0A287A580-1" }, "isoforms": [ { "isoform_ac": "A0A286ZK31-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A580/entry#A0A286ZK31-1", "sequence": { "sequence": "MDGGVPSAQDALAAPQPAAPAGRKPKAKAPLPPAETKYLDASSVDDSVESSAFIMEQKENMIDKDIELLVVLPGDIIKYTTVHGSKPMMDLLIFLCAKYHLNPSSHTIDLLSAEKNPIKFKPNTPIGMLEVEKVILKPKILDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHAPLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRELYAMDVSRATSVTAFNKSSLQESCQISQNLDIMKDKENKGFFSFFQRSKKKREQTASAPATPLVSKHRPTFPKYNTVSKQYISNTLPSDAPKKRRAPLPPMPGSQSAPQDLAHIQERPASCVVKSTSLDETDENSCGAGIVRTGSLQLSSRSTGNSSLKRTKRKAPSPPSKIALQQSDENSHVTAGISSDYSLEEIDEKEELSEVPRDEAENTSLKSQDIPIGSSDIINTLKNDPDSALGSSTGKSSQNSKEEKQESRNTDGQGPHIMVYNASNEESIVDGVRNLMSLDPSQEKDQNEIIVIPTNTENNMENGVRTEINVGGIAKNNNVDMQVDRLPNYQAYKTDTARSYKENHLATSSAPDQKMSEPSTEKTKMQDAAIQTIPSCDSFDGNHQDHNLSDVKVDESVQTSGNNKSIQHSSLSPQDPIDTSGEFRSQAPLPTVYSEELLPRKDPICAHGNDDLLSPVDGTDKNSTASYIKNSPLYRQDYSPKPKPSNEITREYIPKIGMTTYKIVPPRSLEISKDWELETTGYKNDQEIKILGKKDTQENVKETAIQTEDLVISESLKEPREDLKPEPTLRTEHQVQREESCTRGTIVNPLKPTPRMTRDTGTAPFAPSLEDINNVLESKLKSRVSNPQTKPSSFFLQMQKRVSGHYVTSAAAKSVQAAPNPTPKELIKKEVESDTVPPPEPTLSPLSKSPPQPHIKNTDDDSIKKPTETSPPPLASPPPVAPKPVPLPTSQSAALNLKTLKTFGAPRPYSSSAPSPFALAVVKRSQSFSKGRTGLCNEEVDSASSPTPTDTQEGKIPSVNTFVDIPQLSVSRKENNSVHNEQNLQIPSPTDCPSFTLKRQSSSTFQSSDPEQIRQSLLTAIRSGEAAAKLKRVTVPSNTVSVNGRSRLSHSMSLDAQDGH", "length": 1130, "header": "tr|A0A286ZK31-1|A0A287A580_PIG Computationally mapped isoform of Cordon-bleu WH2 repeat protein like 1 OS=Sus scrofa OX=9823 GN=COBLL1 PE=1 SV=1 CANONICAL=A0A287A580-1" }, "locus": { "chromosome": "15", "start_pos": 71497249, "end_pos": 71345068, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044500.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044500.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031817.1", "url": "https://www.ensembl.org/id/ENSSSCP00000031817.1" } ] } }, { "isoform_ac": "A0A287A580-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A580/entry#A0A287A580-1", "sequence": { "sequence": "MGQAVTRRLGARARAAPSRAMDGGVPSAQDALAAPQPAAPAGRKPKAKAPLPPAETKYLDASSVDDSVESSAFIMEQKENMIDKDIELLVVLPGDIIKYTTVHGSKPMMDLLIFLCAKYHLNPSSHTIDLLSAEKNPIKFKPNTPIGMLEVEKVILKPKILDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHAPLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRELYAMDVSRATSVTAFNKSSLQESCQISQNLDIMKDKENKGFFSFFQRSKKKREQTASAPATPLVSKHRPTFPKYNTVSKQYISNTLPSDAPKKRRAPLPPMPGSQSAPQDLAHIQERPASCVVKSTSLDETDENSCGAGIVRTGSLQLSSRSTGNSSLKRTKRKAPSPPSKIALQQSDENSHVTALQSVPAVPPDSVLEANSSEGLSSPEVSLGPGLPRPEQGTVPELLAGAPLSERPATPEAAAASLPSGISSDYSLEEIDEKEELSEVPRDEAENTSLKSQDIPIGSSDIINTLKNDPDSALGSSTGKSSQNSKEEKQESRNTDGQGPHIMVYNASNEESIVDGVRNLMSLDPSQEKDQNEIIVIPTNTENNMENGVRTEINVGGIAKNNNVDMQVDRLPNYQAYKTDTARSYKENHLATSSAPDQKMSEPSTEKTKMQDAAIQTIPSCDSFDGNHQDHNLSDVKVDESVQTSGNNKSIQHSSLSPQDPIDTSGEFRSQAPLPTVYSEELLPRKDPICAHGNDDLLSPVDGTDKNSTASYIKNSPLYRQDYSPKPKPSNEITREYIPKIGMTTYKIVPPRSLEISKDWELETTGYKNDQEIKILGKKDTQENVKETAIQTEDLVISESLKEPREDLKPEPTLRTEHQVQREESCTRGTIVNPLKPTPRMTRDTGTAPFAPSLEDINNVLESKLKSRVSNPQTKPSSFFLQMQKRVSGHYVTSAAAKSVQAAPNPTPKELIKKEVESDTVPPPEPTLSPLSKSPPQPHIKNTDDDSIKKPTETSPPPLASPPPVAPKPVPLPTSQSAALNLKTLKTFGAPRPYSSSAPSPFALAVVKRSQSFSKGRTGLCNEEVDSASSPTPTDTQEGKIPSVNTFVDIPQLSVSRKENNSVHNEQNLQIPSPTDCPSFTLKRQSSSTFQSSDPEQIRQSLLTAIRSGEAAAKLKRVTVPSNTVSVNGRSRLSHSMSLDAQDGH", "length": 1215, "header": "tr|A0A287A580-1|A0A287A580_PIG Isoform 1 of Cordon-bleu WH2 repeat protein like 1 OS=Sus scrofa OX=9823 GN=COBLL1 PE=1 SV=1 CANONICAL=A0A287A580-1" }, "locus": { "chromosome": "15", "start_pos": 71497989, "end_pos": 71345068, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052857.2", "url": "https://www.ensembl.org/id/ENSSSCT00000052857.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038957.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038957.1" } ] } }, { "isoform_ac": "I3LHJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A580/entry#I3LHJ6-1", "sequence": { "sequence": "PAEQDVYILFSVFCFYFRRKPKAKAPLPPAETKYLDASSVDDSVESSAFIMEQKENMIDKDIELLVVLPGDIIKYTTVHGSKPMMDLLIFLCAKYHLNPSSHTIDLLSAEKNPIKFKPNTPIGMLEVEKVILKPKILDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHAPLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRELYAMDVSRATSVTAFNKSSLQESCQISQNLDIMKDKENKGFFSFFQRSKKKREQTASAPATPLVSKHRPTFPKYNTVSKQYISNTLPSDAPKKRRAPLPPMPGSQSAPQDLAHIQERPASCVVKSTSLDETDENSCGAGIVRTGSLQLSSRSTGNSSLKRTKRKAPSPPSKIALQQSDENSHVTALQSVPAVPPDSVLEANSSEGLSSPEVSLGPGLPRPEQGTVPELLAGAPLSERPATPEAAAASLPSGISSDYSLEEIDEKEELSEVPRDEAENTSLKSQDIPIGSSDIINTLKNDPDSALGSSTGKSSQNSKEEKQESRNTDGQGPHIMVYNASNEESIVDGVRNLMSLDPSQEKDQNEIIVIPTNTENNMENGVRTEINVGGIAKNNNVDMQVDRLPNYQAYKTDTARSYKENHLATSSAPDQKMSEPSTEKTKMQDAAIQTIPSCDSFDGNHQDHNLSDVKVDESVQTSGNNKSIQHSSLSPQDPIDTSGEFRSQAPLPTVYSEELLPRKDPICAHGNDDLLSPVDGTDKNSTASYIKNSPLYRQDYSPKPKPSNEITREYIPKIGMTTYKIVPPRSLEISKDWELETTGYKNDQEIKILGKKDTQENVKETAIQTEDLVISESLKEPREDLKPEPTLRTEHQVQREESCTRGTIVNPLKPTPRMTRDTGTAPFAPSLEDINNVLESKLKSRVSNPQTKPSSFFLQMQKRVSGHYVTSAAAKSVQAAPNPTPKELIKKEVESDTVPPPEPTLSPLSKSPPQPHIKNTDDDSIKKPTETSPPPLASPPPVAPKPVPLPTSQSAALNLKTLKTFGAPRPYSSSAPSPFALAVVKRSQSFSKGRTGLCNEEVDSASSPTPTDTQEGKIPSVNTFVDIPQLSVSRKENNSVHNEQNLQIPSPTDCPSFTLKRQSSSTFQSSDPEQIRQSLLTAIRSGEAAAKLKRVTVPSNTVSVNGRSRLSHSMSLDAQDGH", "length": 1191, "header": "tr|I3LHJ6-1|A0A287A580_PIG Computationally mapped isoform of Cordon-bleu WH2 repeat protein like 1 OS=Sus scrofa OX=9823 GN=COBLL1 PE=1 SV=3 CANONICAL=A0A287A580-1" }, "locus": { "chromosome": "15", "start_pos": 71409728, "end_pos": 71345068, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030173.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030173.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023543.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023543.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1102, "start_aa": "Thr", "end_pos": 1102, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1102", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 6, "start_aa": "Thr", "end_pos": 6, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr6", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LHJ6", "url": "https://www.uniprot.org/uniprotkb/I3LHJ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A8V7-1", "protein_name": "Cordon-bleu WH2 repeat protein like 1", "gene_name": "COBLL1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPALGGEAERGRLPQPTPRRRKAKAPPPPSETKTVTDCPFDDTESATIIMEQKENVIDKDIELSVVLPGDVIKYTTVNGRKPMMDLLIFLCAQYHLNPSSYTIELISAENCQIKFKPNTPVGMLEVEKVIVKPKQMDKKKPVPVIPEQTVRVVINYKKTQKTVVRVSPYSPLQELIPIICSKCEFDPSHTVLLKNYQSQEALDVTKSLNDLGLRELYAMDISRATSPVDLNLPSLKDSCRVSENSDVLKEKENKGFFSFFQRSKKKREQTASAPATPLMSKPRPMFTTRSGTGSKQYDSNTLPSEMPKKRRAPLPPMPNSQSAPQELAEVKTESDTVKSNSLDRNEQTPLGLVRKGSLPLSDTASVNSLRRMKRKAPSPPSRTPEDRSESSNETVTESTQSIPTEVEGRAAQMQSETGARTSEYSLEEIDEKEEMSVQEGEESGSTGTSLRTGEATAAFSSMEVPLETERNDCASSVPVPGTVSVDNSQSFKEEKQENMSTDGKELQTQISSDQAAFEKDRKLRILEENKNYDHSDRTLLPTNEEGGEEQTAKIKAVDFRENSKLEVDRLSNCQASKNDIAISHKNYSQLIPGKQDEKTSQTSLDTVKTHDVAIQTGPLVSNLGRTAQKEMIVPQEYESSTFKGMVHQHSTDTNNPGLRVMQGVHKDEEISTERNLQRQEVSYEKTIPMKDEIHICTNSSNVTSPETIAKTPDGSPIRSYPLYRQDMKPKPKPANEITRDYIPKIGMTTYKIVPPPKSLETMKSWESEVSDCKDQEVSASKNSLKYEDPKEFIMQTETPHLPKSTGHLQTGLQNIPAAKNDQLHRVNSISEHGVPSGARVSTEVKQIETVSSKQHVPLMLSLSDSNAASETREKSNTLSPTTKPSSFYLQMQRRVSGHYVSSAIARSTICAPNSIQNEVKNTEMEKKISSPDETSLHATNSFSPPVDEDKDDDGKKIESSTSPVKNNKPPSFPSCQPAPLNLRTLRTFAVPKPYSSSRPSPFALAVSSAVKRSQSFNKTRTISSLAPREEFPVELSSVSSAAEFSSATSMPQVKNLSLHGITGGPQNSLMDKKSSNVSNSEQKIEAQSGASADHPRPVIMRQTSTPVQRSDPEQIHQSLLAAIRSGEAAARLKRVGPPSNTVSVNGRARLNYLYSTEAKANH", "length": 1162 }, "evidence": [ { "id": "A0A287A580", "url": "https://omabrowser.org/oma/group/A0A287A580/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LX00-1", "protein_name": "Cordon-bleu WH2 repeat protein-like 1", "gene_name": "Cobll1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTEYNCCKVSLASSACLLLRFLWSLTFAYCTVLYLGTNKPSPGEHIELSEGKLSVSTAGAKHTSFLHEVPNHRRKTKAKAPLPPAEMKGMDVSSAEDPVESIPVSTEQHDNMIDKDIELSVVLPGDVLKSTTVHGSKPMMDLLVFLCAQYHLNPSSHTINLLSAEENLIKFKPNTPIGMLEVEKVILKPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHSPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLNDLGLRELYAMDISRAPSVTAFSKSSFQESCQISHNPDIVKEKENKGIFSFFQRSKKKREQTASAPATPLVSKHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGAAQGQERRASCVERSTSVDDTDKSSSEGFMVRTGSLQLSGSTSVGTSSLKRTKRKAPAPPSKPSLTETDEGSSAAAHGLPLEDGIVPDSISEVSSPEGMSSPAGVSSDYSLEEIDEKEELMEASKDQAGSVKSPTIASASTDMIITAENDPDSALSISDGETSPGSKGNTPEGRNPEGQGPHHPVECLIGNENNVSDSIKDLKTLSPNQESVIQNEVVVCATSTDYVKNRPREMEATIEGEAQKKVGDVEAERLSGSPAGRMDDVQSSRENHLTASPGPDQKSNQPRVEKTKMQDAAIQATPACSTFDGNHEAHNSPDLRVDETAQTLGSSTSTQHSSASFQDSVNASREVRSQGTSTYVQDRLPVKEAACTYGNNDALSPIDGSGKNPAASSLKNFPLYRQDNHPKPKPSNEITREYIPKIGMTTYKIVPPKSLEVVKDWDSEAAGKKDNQKTLAVAQKHAIETMTETAVQAEALVTSKNSQQPQPDRTPKPSSGTEHPLHRTVSSPVGTEMNPPKPPRMTTDTGTIPFAPNLEDINNILESKFRSRASNPQAKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPTPKEPTIKEVQRDPQLPPEQCLSPLSERTHSAPLPNISKADDNRIQKPAETSPPPVAPKPMALPAETSPPAVAPKPMAFPAETSLPPVSPKPMALPTEASSSPISPKPMAPPAEASIPPVVPKPMAPPAEASPLPVAPKPMAFPAETSLPPVAPKPMALPTEASPPPVAPKPLALPGSQGASLNLKTLKTFGAPRPYNSSAPSPFALAVVKRSQSFSKASPESPSEDSSAQPPAAIQDGKTQTVNQPTVGSQHDGVDKQNKPVQNEHSSQRLTPADGPSSFTLQRQSSLNFQSSDPEHIRQSLLTAIRSGEAAAKLKRVTVPSNRISVNGKSGLSQPMSIDAQDSC", "length": 1310 }, "evidence": [ { "id": "A0A287A580", "url": "https://omabrowser.org/oma/group/A0A287A580/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3UMF0-1", "protein_name": "Cordon-bleu protein-like 1", "gene_name": "Cobll1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"length": 1273 }, "evidence": [ { "id": "A0A287A580", "url": "https://omabrowser.org/oma/group/A0A287A580/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin monomer binding", "id": "GO:0003785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003785", "evidence": [ { "database": "UniProtKB", "id": "A0A287A580", "url": "https://www.uniprot.org/uniprotkb/A0A287A580" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "A0A287A580", "url": "https://www.uniprot.org/uniprotkb/A0A287A580" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287A580", "url": "https://www.uniprot.org/uniprotkb/A0A287A580" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1130, "end_pos": 1132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" }, { "start_pos": 395, "end_pos": 397, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 517, "end_pos": 519, "annotation": "n_glycosylation_sequon" }, { "start_pos": 576, "end_pos": 578, "annotation": "n_glycosylation_sequon" }, { "start_pos": 702, "end_pos": 704, "annotation": "n_glycosylation_sequon" }, { "start_pos": 718, "end_pos": 720, "annotation": "n_glycosylation_sequon" }, { "start_pos": 777, "end_pos": 779, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A580", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A580" }, { "id": "PF09469", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09469" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cordon-bleu ubiquitin-like", "eco_id": "ECO_0000259", "start_pos": 164, "end_pos": 251, "start_aa": "Lys", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 6, 1102 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1130, "end_pos": 1132 }, { "start_pos": 256, "end_pos": 258 }, { "start_pos": 395, "end_pos": 397 }, { "start_pos": 441, "end_pos": 443 }, { 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"gene_names": [ { "name": "SRBD1", "type": "recommended", "evidence": [ { "id": "A0A287AEY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1" } ] } ], "protein_names": [ { "name": "S1 RNA-binding domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A287AEY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "DNA- and histone-binding protein that localizes to the central axes of mitotic chromosomes. Promotes chromosome segregation by facilitating TOP2A recruitment to mitotic chromosomes, thereby preventing anaphase failure. During prophase, safeguards the decatenation process to avoid the formation of difficult-to-resolve DNA structures, preventing chromosome missegregation. Also contributes to the regulation of nucleus pulposus cell senescence.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZK61", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK61#function" }, { "database": "UniProtKB", "id": "ARBA00094394", "url": "https://www.uniprot.org/uniprotkb/ARBA00094394#function" }, { "database": "UniProtKB", "id": "A0A287AEY1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AEY1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SRBD1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1", "locus": { "chromosome": "3", "start_pos": 95138915, "end_pos": 94909127, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008445", "url": "https://www.ensembl.org/id/ENSSSCG00000008445" } ] } } ], "crossref": [ { "id": "A0A287AEY1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AEY1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008445", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008445", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05685", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05685", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525459", "url": "https://www.ncbi.nlm.nih.gov/gene/100525459", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006641", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006641", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010994", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010994", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023319", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023319", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023323", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023323", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032639", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032639", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037027", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037027", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041692", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041692", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050437", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050437", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10724", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10724", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10724:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10724:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00575", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00575", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09371", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09371", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12836", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12836", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16921", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16921", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17674", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17674", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22706", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22706", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZK61", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZK61-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEY1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FI09", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FI09-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI09-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S5K6", "url": "https://www.uniprot.org/uniprotkb/F1S5K6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S5K6-1", "url": "https://www.uniprot.org/uniprotkb/F1S5K6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSLPRRAKVKVQTVVSKDEFSSLSELSSASEDDKEDSAWEPQKKVPRSRKPPVSKESKPKRAPRVKKTPLQSRDGVEDVAVKEELNSSVAIADVDMEDRKNKLDTVQGLKTARMKRKNSTQSPSARRTKKLKADKDISKASSLESGSNSTETPSTSATWEGGSKKEEKEDDVTCGQPPLKKVKTETCPQGQPVRFPANASSIKEEVEMNWDIVQVLSERTNIELWVCANIIRLFNDDNTIPFIIRYRKELINNLDADSLREVRQTLEELRAVAKKTHSTIQKIKKEGKMSECLLKALLNCKTFEELEHVSAPYKTGSKGTKAQRAKQLGLEGAARTLLENPGELNLLSYIRPNVKGLSALQDIETGVQHILADMIAKDRDTLDFIRKLCQNRYICIQSSLAKVSSKKVNEKDVDKFQLYQNFSCNIRNIQHHQILAINRGENLKILTVKVNISDGVKNEFCRWCIQNRWRPRGFARPELMKILYSSLDDSFKRLIYPLLCREFRAKLTSDAEKESVMMFGRNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTSQILHTDVVYLHCGQGFREAEKIKRLLLNFNCSTVVIGNGTACRETEAYFADLIMKNYFAPLDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKIEPKHIGVGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSEVLLRHIAGLNANRAKNIIEWREKNGPFINREQLKKVKGLGPKSFQQCAGFIRVNQDYIRTFCSSQQTESAGEIQGVAVTSSAGVEVTNEKPGKKKSKTAVNVVLKPNPLDQTCIHPESYDIAMRFLSFIGGTLNEIGKPEMQQKINSFLEKEGIEKIAERLQTTVHTLQVIIDGLSQPETFDFRTDFDKPDFKRSIVCLEDLQVGTVLTGKVENATLFGIFVDIGVGRSGLIPIRNVTEAKLSKTKKRRSLGLGPGERVEVQVLNIDIPRSRITLDLIRVL", "length": 995, "header": "tr|A0A287AEY1-1|A0A287AEY1_PIG Isoform 1 of S1 RNA-binding domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SRBD1 PE=1 SV=3 CANONICAL=A0A287AEY1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZK61-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1/entry#A0A286ZK61-1", "sequence": { "sequence": "MCSHTQNPGPPDTPGGKMSSLPRRAKVKVQTVVSKDEFSSLSELSSASEDDKEDSAWEPQKKVPRSRKPPVSKESKPKRAPRVKKTPLQSRDGVEDVAVKEELNSSVAIADVDMEDRKNKLDTVQGLKTARMKRKNSTQSPSARRTKKLKADKDISKASSLESGSNSTETPSTSATWEGGSKKEEKEDDVTCGQPPLKKVKTETCPQGQPVRFPANASSIKEEVEMNWDIVQVLSERTNIELWVCANIIRLFNDDNTIPFIIRYRKELINNLDADSLREVRQTLEELRAVAKKTHSTIQKIKKEGKMSECLLKALLNCKTFEELEHVSAPYKTGSKGTKAQRAKQLGLEGAARTLLENPGELNLLSYIRPNVKGLSALQDIETGVQHILADMIAKDRDTLDFIRKLCQNRYICIQSSLAKVSSKKVNEKDVDKFQLYQNFSCNIRNIQHHQILAINRGENLKILTVKVNISDGVKNEFCRWCIQNRWRPRGFARPELMKILYSSLDDSFKRLIYPLLCREFRAKLTSDAEKESVMMFGRNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTSQILHTDVVYLHCGQGFREAEKIKRLLLNFNCSTVVIGNGTACRETEAYFADLIMKNYFAPLDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKIEPKHIGVGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSEVLLSSQQTESAGEIQGVAVTSSAGVEVTNEKPGKKKSKTAVNVVLKPNPLDQTCIHPESYDIAMRFLSFIGGTLNEIGKPEMQQKINSFLEKEGIEKIAERLQTTVHTLQVIIDGLSQPETFDFRTDFDKPDFKRSIVCLEDLQVGTVLTGKVENATLFGIFVDIGVGRSGLIPIRNVTEAKLSKTKKRRSLGLGPGERVEVQVLNIDIPRSRITLDLIRVL", "length": 953, "header": "tr|A0A286ZK61-1|A0A287AEY1_PIG Computationally mapped isoform of S1 RNA-binding domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SRBD1 PE=1 SV=1 CANONICAL=A0A287AEY1-1" }, "locus": { "chromosome": "3", "start_pos": 95133331, "end_pos": 94909139, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044314.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044314.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031847.1", "url": "https://www.ensembl.org/id/ENSSSCP00000031847.1" } ] } }, { "isoform_ac": "A0A287AEY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1/entry#A0A287AEY1-1", "sequence": { "sequence": "MSSLPRRAKVKVQTVVSKDEFSSLSELSSASEDDKEDSAWEPQKKVPRSRKPPVSKESKPKRAPRVKKTPLQSRDGVEDVAVKEELNSSVAIADVDMEDRKNKLDTVQGLKTARMKRKNSTQSPSARRTKKLKADKDISKASSLESGSNSTETPSTSATWEGGSKKEEKEDDVTCGQPPLKKVKTETCPQGQPVRFPANASSIKEEVEMNWDIVQVLSERTNIELWVCANIIRLFNDDNTIPFIIRYRKELINNLDADSLREVRQTLEELRAVAKKTHSTIQKIKKEGKMSECLLKALLNCKTFEELEHVSAPYKTGSKGTKAQRAKQLGLEGAARTLLENPGELNLLSYIRPNVKGLSALQDIETGVQHILADMIAKDRDTLDFIRKLCQNRYICIQSSLAKVSSKKVNEKDVDKFQLYQNFSCNIRNIQHHQILAINRGENLKILTVKVNISDGVKNEFCRWCIQNRWRPRGFARPELMKILYSSLDDSFKRLIYPLLCREFRAKLTSDAEKESVMMFGRNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTSQILHTDVVYLHCGQGFREAEKIKRLLLNFNCSTVVIGNGTACRETEAYFADLIMKNYFAPLDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKIEPKHIGVGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSEVLLRHIAGLNANRAKNIIEWREKNGPFINREQLKKVKGLGPKSFQQCAGFIRVNQDYIRTFCSSQQTESAGEIQGVAVTSSAGVEVTNEKPGKKKSKTAVNVVLKPNPLDQTCIHPESYDIAMRFLSFIGGTLNEIGKPEMQQKINSFLEKEGIEKIAERLQTTVHTLQVIIDGLSQPETFDFRTDFDKPDFKRSIVCLEDLQVGTVLTGKVENATLFGIFVDIGVGRSGLIPIRNVTEAKLSKTKKRRSLGLGPGERVEVQVLNIDIPRSRITLDLIRVL", "length": 995, "header": "tr|A0A287AEY1-1|A0A287AEY1_PIG Isoform 1 of S1 RNA-binding domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SRBD1 PE=1 SV=3 CANONICAL=A0A287AEY1-1" }, "locus": { "chromosome": "3", "start_pos": 95133331, "end_pos": 94915490, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046422.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046422.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042382.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042382.3" } ] } }, { "isoform_ac": "A0A8W4FI09-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1/entry#A0A8W4FI09-1", "sequence": { "sequence": "MSSLPRRAKVKVQTVVSKDEFSSLSELSSASEDDKEDSAWEPQKKVPRSRKPPVSKESKPKRAPRVKKTPLQSRDGVEDVAVKEELNSSVAIADVDMEDRKNKLDTVQGLKTARMKRKNSTQSPSARRTKKLKADKDISKASSLESGSNSTETPSTSATWEGGSKKEEKEDDVTCGQPPLKKVKTETCPQGQPVRFPANASSIKEEVEMNWDIVQVLSERTNIELWVCANIIRLFNDDNTIPFIIRYRKELINNLDADSLREVRQTLEELRAVAKKTHSTIQKIKKEGKMSECLLKALLNCKTFEELEHVSAPYKTGSKGTKAQRAKQLGLEGAARTLLENPGELNLLSYIRPNVKGLSALQDIETGVQHILADMIAKDRDTLDFIRKLCQNRYICIQSSLAKVSSKKVNEKDVDKFQLYQNFSCNIRNIQHHQILAINRGENLKILTVKVNISDGVKNEFCRWCIQNRAKLTSDAEKESVMMFGRNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTSQILHTDVVYLHCGQGFREAEKIKRLLLNFNCSTVVIGNGTACRETEAYFADLIMKNYFAPLDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKIEPKHIGVGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSEVLLSSQQTESAGEIQGVAVTSSAGVEVTNEKPGKKKSKTAVNVVLKPNPLDQTCIHPESYDIAMRFLSFIGGTLNEIGKPEMQQKINSFLEKEGIEKIAERLQTTVHTLQVIIDGLSQPETFDFRTDFDKPDFKRSIVCLEDLQVGTVLTGKVENATLFGIFVDIGVGRSGLIPIRNVTEAKLSKTKKRRSLGLGPGERVEVQVLNIDIPRSRITLDLIRVL", "length": 900, "header": "tr|A0A8W4FI09-1|A0A287AEY1_PIG Computationally mapped isoform of S1 RNA-binding domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SRBD1 PE=1 SV=1 CANONICAL=A0A287AEY1-1" }, "locus": { "chromosome": "3", "start_pos": 95133331, "end_pos": 94915490, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095746.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095746.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078960.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078960.1" } ] } }, { "isoform_ac": "F1S5K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1/entry#F1S5K6-1", "sequence": { "sequence": "MCSHTQNPGPPDTPGGKMSSLPRRAKVKVQTVVSKDEFSSLSELSSASEDDKEDSAWEPQKKVPRSRKPPVSKESKPKRAPRVKKTPLQSRDGVEDVAVKEELNSSVAIADVDMEDRKNKLDTVQGLKTARMKRKNSTQSPSARRTKKLKADKDISKASSLESGSNSTETPSTSATWEGGSKKEEKEDDVTCGQPPLKKVKTETCPQGQPVRFPANASSIKEEVEMNWDIVQVLSERTNIELWVCANIIRLFNDDNTIPFIIRYRKELINNLDADSLREVRQTLEELRAVAKKTHSTIQKIKKEGKMSECLLKALLNCKTFEELEHVSAPYKTGSKGTKAQRAKQLGLEGAARTLLENPGELNLLSYIRPNVKGLSALQDIETGVQHILADMIAKDRDTLDFIRKLCQNRYICIQSSLAKVSSKKVNEKDVDKFQLYQNFSCNIRNIQHHQILAINRGENLKILTVKVNISDGVKNEFCRWCIQNRWRPRGFARPELMKILYSSLDDSFKRLIYPLLCREFRAKLTSDAEKESVMMFGRNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTSQILHTDVVYLHCGQGFREAEKIKRLLLNFNCSTVVIGNGTACRETEAYFADLIMKNYFAPLDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKIEPKHIGVGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSEVLLRHIAGLNANRAKNIIEWREKNGPFINREQLKKVKGLGPKSFQQCAGFIRVNQDYIRTFCSSQQTESAGEIQGVAVTSSAGVEVTNEKPGKKKSKTAVNVVLKPNPLDQTCIHPESYDIAMRFLSFIGGTLNEIGKPEMQQKINSFLEKEGIEKIAERLQTTVHTLQVIIDGLSQPETFDFRTDFDKPDFKRSIVCLEDLQAYSFISIRIKLQMGIEIAFLPKD", "length": 957, "header": "tr|F1S5K6-1|A0A287AEY1_PIG Computationally mapped isoform of S1 RNA-binding domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SRBD1 PE=1 SV=3 CANONICAL=A0A287AEY1-1" }, "locus": { "chromosome": "3", "start_pos": 95134471, "end_pos": 94909139, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009247.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009247.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009013.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009013.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZK61", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK61" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEY1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEY1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEY1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEY1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "nucleobase-containing compound metabolic process", "id": "GO:0006139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006139", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEY1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1" } ], "pmid": "" }, { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEY1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 422, "end_pos": 424, "annotation": "n_glycosylation_sequon" }, { "start_pos": 452, "end_pos": 454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 588, "end_pos": 590, "annotation": "n_glycosylation_sequon" }, { "start_pos": 596, "end_pos": 598, "annotation": "n_glycosylation_sequon" }, { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" }, { "start_pos": 928, "end_pos": 930, "annotation": "n_glycosylation_sequon" }, { "start_pos": 950, "end_pos": 952, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AEY1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 995, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AEY1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AEY1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AEY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY1" }, { "id": "PS50126", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50126" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "S1 motif", "eco_id": "ECO_0000259", "start_pos": 919, "end_pos": 992, "start_aa": "Gly", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 119, "end_pos": 121 }, { "start_pos": 149, "end_pos": 151 }, { "start_pos": 199, "end_pos": 201 }, { "start_pos": 422, "end_pos": 424 }, { "start_pos": 452, "end_pos": 454 }, { "start_pos": 588, "end_pos": 590 }, { "start_pos": 596, "end_pos": 598 }, { "start_pos": 87, "end_pos": 89 }, { "start_pos": 928, "end_pos": 930 }, { "start_pos": 950, "end_pos": 952 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"Tankyrase 1-binding protein C-terminal domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287ACN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ACN0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ACN0", "url": "https://www.uniprot.org/uniprotkb/A0A287ACN0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287ACN0", "locus": {} } ], "crossref": [ { "id": "A0A287ACN0", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ACN0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033385", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033385", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR032764", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032764", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EEANNAW", "url": "https://omabrowser.org/oma/group/EEANNAW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22042", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22042", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22042:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22042:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15327", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15327", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZK70", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZK70-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACN0", "url": "https://www.uniprot.org/uniprotkb/A0A287ACN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACN0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYU4", "url": "https://www.uniprot.org/uniprotkb/A0A287AYU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYU4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLW5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLW5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTKSLLLVNITVSSASIMWPSQSPPLPGRIWAAGPTCHPSPPPLTRREGPKGNLSGGERRAVWPSGVTTFRTVEGHRWISRGPPQRKAPQSESKRACPSCRKPERGGENHPKGGPASPGRAQRPKTSRRGLIGRSQGIERVIRCCCGTSGGRVPSRTVSRRSSSRESFRRFSARSQQRFSSLRKRQPDSEPPDLDQLKQCFSRRTPEAKDTDTLVQEADSQYGTWPDQRQSGESLAPESPSPDSSATSTRKQAPSSRLSSLSSQTEATSIGDQHDCSRDQRSTSVDRSSTDLESTDGTEGPLPPDISPSKRVDDFSFIDQTSVLDSSALKTRVQLSKRSRRRAPLSHPRRRSRVSESESRSPLEEEADSAWMFRDSTEEKSPRKEESDEEEKPSRAERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGETPGWAPQPKTSKSPFQPGVLGSRVLPSSVEKDERSEEPSPQWLKELKSKKRQSLCENQA", "length": 492, "header": "tr|A0A287ACN0-1|A0A287ACN0_PIG Isoform 1 of Tankyrase 1-binding protein C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287ACN0-1" }, "isoforms": [ { "isoform_ac": "A0A286ZK70-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACN0/entry#A0A286ZK70-1", "sequence": { "sequence": "MEYYYCPSLLKLLRYLWDQLKQCFSRRTPEAKDTDTLVQEADSQYGTWPDQRQSGESLAPESPSPDSSATSTRKQAPSSRLSSLSSQTEATSIGDQHDCSRDQRSTSVDRSSTDLESTDGTEGPLPPDISPSKRVDDFSFIDQTSVLDSSALKTRVQLSKRSRRRAPLSHPRRRSRVSESESRSPLEEEADSAWMFRDSTEEKSPRKEESDEEEKPSRAERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGETPGWAPQPKTSKSPFQPGVLGSRVLPSSVEKDERSEEPSPQWLKELKSKKRQSLCENQA", "length": 315, "header": "tr|A0A286ZK70-1|A0A287ACN0_PIG Computationally mapped isoform of Tankyrase 1-binding protein C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287ACN0-1" }, "locus": { "chromosome": "14", "start_pos": 43185240, "end_pos": 43090124, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063422.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063422.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031970.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031970.2" } ] } }, { "isoform_ac": "A0A287ACN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACN0/entry#A0A287ACN0-1", "sequence": { "sequence": "MTKSLLLVNITVSSASIMWPSQSPPLPGRIWAAGPTCHPSPPPLTRREGPKGNLSGGERRAVWPSGVTTFRTVEGHRWISRGPPQRKAPQSESKRACPSCRKPERGGENHPKGGPASPGRAQRPKTSRRGLIGRSQGIERVIRCCCGTSGGRVPSRTVSRRSSSRESFRRFSARSQQRFSSLRKRQPDSEPPDLDQLKQCFSRRTPEAKDTDTLVQEADSQYGTWPDQRQSGESLAPESPSPDSSATSTRKQAPSSRLSSLSSQTEATSIGDQHDCSRDQRSTSVDRSSTDLESTDGTEGPLPPDISPSKRVDDFSFIDQTSVLDSSALKTRVQLSKRSRRRAPLSHPRRRSRVSESESRSPLEEEADSAWMFRDSTEEKSPRKEESDEEEKPSRAERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGETPGWAPQPKTSKSPFQPGVLGSRVLPSSVEKDERSEEPSPQWLKELKSKKRQSLCENQA", "length": 492, "header": "tr|A0A287ACN0-1|A0A287ACN0_PIG Isoform 1 of Tankyrase 1-binding protein C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287ACN0-1" }, "locus": { "chromosome": "14", "start_pos": 43185240, "end_pos": 43058209, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054807.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054807.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041646.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041646.2" } ] } }, { "isoform_ac": "A0A287AYU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACN0/entry#A0A287AYU4-1", "sequence": { "sequence": "MDYLGDKLTVAQTHMTQWMGTVRRSFQEALNLVTSTVGPERASGEPAGRTSFKRTSSFRHLASRSRESFRRFSARSQQRFSSLRKRQPDSEPPDLDQLKQCFSRRTPEAKDTDTLVQEADSQYGTWPDQRQSGESLAPESPSPDSSATSTRKQAPSSRLSSLSSQTEATSIGDQHDCSRDQRSTSVDRSSTDLESTDGTEGPLPPDISPSKRVDDFSFIDQTSVLDSSALKTRVQLSKRSRRRAPLSHPRRRSRVSESESRSPLEEEADSAWMFRDSTEEKSPRKEESDEEEKPSRAERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGETPGWAPQPKTSKSPFQPGVLGSRVLPSSVEKDERSEEPSPQWLKELKSKKRQSLCENQA", "length": 393, "header": "tr|A0A287AYU4-1|A0A287AYU4_PIG Computationally mapped isoform of Tankyrase 1-binding protein C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A287ACN0-1" }, "locus": { "chromosome": "14", "start_pos": 43185240, "end_pos": 43122611, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049132.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049132.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049332.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049332.1" } ] } }, { "isoform_ac": "A0A8W4FLW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACN0/entry#A0A8W4FLW5-1", "sequence": { "sequence": "MDYLGDKLTVAQTHMTQWMGTVRRSFQEALNLVTSTVGPERASGEPAGRTSFKRTSSFRHLASRSRESFRRFSARSQQRFSSLRKRQPDSEPPDLDQLKQCFSRRTPEAKDTDTLVQEADSQYGTWPDQRQSGESLAPESPSPDSSATSTRKQAPSSRLSSLSSQTEATSIGDQHDCSRDQRSTSVDRSSTDLESTDGTEGPLPPDISPSKRVDDFSFIDQTSVLDSSALKTRVQLSKRSRRRAPLSHPRRRSRVSESESRSPLEEEADSAWMFRDSTEEKSPRKEESDEEEKPSRAERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGETPGWAPQPKTSKSPFQPGVLGSRVLPSSVEKDER", "length": 368, "header": "tr|A0A8W4FLW5-1|A0A287ACN0_PIG Computationally mapped isoform of Tankyrase 1-binding protein C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A287ACN0-1" }, "locus": { "chromosome": "14", "start_pos": 43180773, "end_pos": 43122611, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100005.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100005.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079888.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079888.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZK70", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK70" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7GXY7-1", "protein_name": "Uncharacterized protein KIAA1671 homolog isoform X1", "gene_name": "Kiaa1671", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVTRVEVGSIASLRAGPGLGDISREEALKRTYFCQTGDVPGAPSTRLLRAKSPLRTHLFPLPIAPKPFLKEQVLEKKAPGTTQSCPSAETDKKEAKEVLARRMPSLAGQEADSGETLQNGPSVPNKATFLRSGPSTMGFFETTKAGPSLGKGTSERSLESSSRAAQVSPLSARPEVAAKPALPTRKPPVTLPRPTSLSQDAGSAVSQEEAGRAQPLPKAHSVEDPAGQAPEAKPHPKRRPMSAVFSDYLQPPKPGPGGVAVMGKVPPTPPEKTWVRKPRPLSMDLTAAFESRETLLRKVAGEQTVTEPQGPERTSMERRADVEGPACMNTTPQDPDSDFQEVAKRLHARREKVLLKQTDTNSPRTPRARVIPGDDQSLQVEEKPDQQSEKVLEPPLLRPGRGLGLAQVKGGVSDQEAPAGMERKSARSIRKRLSLFEEGSAAALAVVSEPSPVTPESQSTMPEPERAGVNVQALIKGWTVERAGTKPEVRRRASQGQSLPADLTKPFSRSPSSNEVGFEKCAVFSGELPGERREKPKEGHGLDGAPAAKSPWKSGVPQKSRQMEPKNASDQEDPDRCQRAHSMGDPGPSEVSPEGDGSFQKVWATVFEHHVERHTVVDQAGNCLSPIPPHDVTDIQDPKPRPEKGYWLGKDPPAVMNKRDSSRWSEHADQGMLGRAVDVEPRQYPTSVPETHPMGEGHNGHSVLRHLESPPVSQRIQPKYDIVHASGERAHSEAVSRVPEEKAVTLRSARPRLSLQGQQLSQEISPAYLEYALQAHGGTIQRASSIWEARGQEASGPKLDCQQPRDGFGDGCPSSKWTGEGVVASWHSTSVVSKDLSGPQRGPSWDCSSNPPSRATTEPGDSLVWREDSLSLPKSSLEVAYEDNPRPAQAFQPEVRMRRSNTSEPRMDRWRRRTLPHDVKFDEFSLLTPENTSKRQQRLAGDVTSPSCALKRPPLSYHQTQTREVTYPVEKPGPSTEPSATFFAVTYQIPDIQKTKSVVKPGPENVSEPSRRMAPPLSPRSFVSTVTSPSHEELWAPASSKGWAKGREYEEVKSLPKYPKATDQPSSVGDRTLDPSRDRVIDVDALGTHRVSEDGTLKDSRIRASSGVDAPQTSPVLRRPKSLLVRRRTEVISETFPGKMRDGYRSGVLDIDALMAEYKEHSSRVPSKAQEQRDSPPVESSGSPQERSGWPKEAEWRRRSLKEAPRSDSVGKQAGASVKTPQSPGPSKQPTESLGAAMTTKSGLPLWAPPHSAFAENCPSLSPVPTGSRRKSTGITEFESKSSSSEHQEAKCKQGPAKSQEPGIEDRICPRSPPSDQKKGMPKRSTGQGVEGNGVQRGNPPHDCVWAPLVIKRACSEKGPPARVLEGLSIMQDARQRRREQPRGKPTLPAETPKATSGPCRKEARKSDGPKVSLQNLEQGECLQDGQQPLRQVSPVASVPRRSHSFCKDKRSGPFVNQLKQCFSRRTTEAKDTDTLVHEADSQYGTWADQHQNGGSFGPESPSSPDSSATSAGKQPPSSHLSSYTESTSVEQHDSPRDRRSSSVDRSSSELESTDGPEGPHPSDACPAEREDDFSFIHQTSVLDSSALKTRVQLSKRSRRRAPISHSLRRSQFSESESRSPLEEESHSTWMFKDSTEEKSPKREESDEEPPKVERTPVSHPQRMPVFPGMDPAVLKAQLHKRPEVDSPGESLSWTPQPKTPKSPFQPGVLGSRVLPSSIDKDERSEEHSPQWLKELKSKKRQSLYDNQA", "length": 1749 }, "evidence": [ { "id": "A0A287ACN0", "url": "https://omabrowser.org/oma/group/A0A287ACN0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" }, { "start_pos": 9, "end_pos": 11, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ACN0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 492, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ACN0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ACN0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ACN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ACN0" }, { "id": "SM01319", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01319" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tankyrase 1-binding protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 312, "end_pos": 483, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 53, "end_pos": 55 }, { "start_pos": 9, "end_pos": 11 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A7Y9-1", "uniprot_ac": "A0A287A7Y9", "uniprot_id": "A0A287A7Y9_PIG", "mass": { "chemical_mass": 38076.0, "monoisotopic_mass": 38076.0 }, "refseq": { "ac": "XP_020918392", "name": "ELMO domain-containing protein 1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918392" }, "gene_names": [ { "name": "ELMOD1", "type": "recommended", "evidence": [ { "id": "A0A287A7Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9" } ] }, { "name": "ELMOD1", "type": "synonym", "evidence": [ { "id": "XP_020918392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918392" } ] } ], "protein_names": [ { "name": "ELMO domain containing 1", "type": "synonym", "evidence": [ { "id": "A0A287A7Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9/entry#names_and_taxonomy" } ] }, { "name": "ELMO domain-containing protein 1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020918392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918392" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ELMOD1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9", "locus": { "chromosome": "9", "start_pos": 36208696, "end_pos": 36142316, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015002", "url": "https://www.ensembl.org/id/ENSSSCG00000015002" } ] } } ], "crossref": [ { "id": "A0A287A7Y9", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A7Y9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015002", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015002", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100626413", "url": "https://www.ncbi.nlm.nih.gov/gene/100626413", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006816", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006816", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050868", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050868", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100626413", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626413", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PHFQQTF", "url": "https://omabrowser.org/oma/group/PHFQQTF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12771", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12771", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12771:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12771:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04727", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04727", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020918392", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918392", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZLY1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLY1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A7Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANX7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANX7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV31", "url": "https://www.uniprot.org/uniprotkb/F1SV31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV31-1", "url": "https://www.uniprot.org/uniprotkb/F1SV31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDINPQLGISLQACLLQIVGYRNLIADVEKLRREPYDSENPQHEEMLLQLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDAAGAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDMALCPHFAASEGLINM", "length": 326, "header": "tr|A0A287A7Y9-1|A0A287A7Y9_PIG Isoform 1 of ELMO domain containing 1 OS=Sus scrofa OX=9823 GN=ELMOD1 PE=1 SV=1 CANONICAL=A0A287A7Y9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9/entry#A0A286ZLY1-1", "sequence": { "sequence": "MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDINPQLGISLQACLLQIVGYRNLIADVEKLRREPYDSENPQHEEMLLQLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDAAGAQQVLSDSLHPKCRYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDMALCPHFAASEGLINM", "length": 309, "header": "tr|A0A286ZLY1-1|A0A287A7Y9_PIG Computationally mapped isoform of ELMO domain containing 1 OS=Sus scrofa OX=9823 GN=ELMOD1 PE=1 SV=2 CANONICAL=A0A287A7Y9-1" }, "locus": { "chromosome": "9", "start_pos": 36206646, "end_pos": 36161690, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064257.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064257.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032566.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032566.2" } ] } }, { "isoform_ac": "A0A287A7Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9/entry#A0A287A7Y9-1", "sequence": { "sequence": "MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDINPQLGISLQACLLQIVGYRNLIADVEKLRREPYDSENPQHEEMLLQLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDAAGAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDMALCPHFAASEGLINM", "length": 326, "header": "tr|A0A287A7Y9-1|A0A287A7Y9_PIG Isoform 1 of ELMO domain containing 1 OS=Sus scrofa OX=9823 GN=ELMOD1 PE=1 SV=1 CANONICAL=A0A287A7Y9-1" }, "locus": { "chromosome": "9", "start_pos": 36206646, "end_pos": 36161690, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040363.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040363.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055589.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055589.1" } ] } }, { "isoform_ac": "A0A287ANX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9/entry#A0A287ANX7-1", "sequence": { "sequence": "MGRVLSFVFGRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDINPQLGISLQACLLQIVGYRNLIADVEKLRREPYDSENPQHEEMLLQLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDAAGAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDMALCPHFAASEGLINM", "length": 331, "header": "tr|A0A287ANX7-1|A0A287ANX7_PIG Computationally mapped isoform of ELMO domain containing 1 OS=Sus scrofa OX=9823 GN=ELMOD1 PE=1 SV=1 CANONICAL=A0A287A7Y9-1" }, "locus": { "chromosome": "9", "start_pos": 36206646, "end_pos": 36176958, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037302.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037302.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045768.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045768.1" } ] } }, { "isoform_ac": "F1SV31-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9/entry#F1SV31-1", "sequence": { "sequence": "MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDINPQLGISLQACLLQIVGYRNLIADVEKLRREPYDSENPQHEEMLLQLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDAAGAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDMALCPHFAASEGLINM", "length": 334, "header": "tr|F1SV31-1|A0A287A7Y9_PIG Computationally mapped isoform of ELMO domain containing 1 OS=Sus scrofa OX=9823 GN=ELMOD1 PE=1 SV=3 CANONICAL=A0A287A7Y9-1" }, "locus": { "chromosome": "9", "start_pos": 36206646, "end_pos": 36161690, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016366.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016366.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015927.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015927.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SV31", "url": "https://www.uniprot.org/uniprotkb/F1SV31" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626413", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626413", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GJG9-1", "protein_name": "ELMO domain containing 1", "gene_name": "Elmod1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDSQSLHLLVLRMPENLTAVNGEKRMSLKLSFCQLLTQLSIGRVLSFVPHRMLIQVCLYFYCKFLWRCMKFVMRKLTGRCELQRICYGTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIDDIMELKKINPDINPQLGISLQACLLQIVGYRNLIADVEKLRREPYDSDNPQHEEMLLKLWEFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATVAQQVLCDSVHPKCSKFSKTEWEKKKMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDMALCPHFAASEGLINM", "length": 372 }, "evidence": [ { "id": "A0A287A7Y9", "url": "https://omabrowser.org/oma/group/A0A287A7Y9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0XPZ9-1", "protein_name": "ELMO domain containing 1", "gene_name": "ELMOD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKHFLRMFIQVCLYFYCKCLWRCLKFVVRKLTGRCELQRICYNTKPGAARTMKIEASLKGSKSKRLQTSVSVHPDAIEKTIDDIMELKKINPDINPQLGVSLQACLLQIVGYRNLIVEVEKLRREPYDSENLQHEEMLLKLWKCLKPNSPLKARISKQWCEIGFQGDDPKTDFRGMGLLGLYNLVYFAEWDTEVAQQVLSDSLHPKYSQFSKVEWEKKKFDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNVAPEAPTLTHFQQTFCYLMHEFHKFWIEEDPLDIMEFNRVREKFHKRILKQLQNPEMALCPHFAASESLINM", "length": 326 }, "evidence": [ { "id": "A0A287A7Y9", "url": "https://omabrowser.org/oma/group/A0A287A7Y9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E9QCF8-1", "protein_name": "ELMO domain-containing protein 1", "gene_name": "elmod1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKHFLRVLTQFLVFLYCKCLWRGLKFVIRKVTGRCELQRICYNNKPGARRTLKIESSLRCSKHELLQSAISVHPDSVEKSIDDIMALKKINLDTNPQLGISLQACLLQIVGYRNLVVEVEKLRREPYDCENPAHEEMLMKLWKELRPDSPLSGRISKQWCEIGFQGNDPKTDFRGMGLLGLHNLLYFAEHDKATALQVLHDSLQPKHSKMSKAEWEKKKFDKAIGYSFAIVGINITDLAYSLLVSGALKTHLYNVAPEMPSLVHFQQTFCYLMQEFHRFWMEEDPCDIMEFNRVRTKFYKRVLKQLKNPDMALCPHFTASDLHLVNL", "length": 327 }, "evidence": [ { "id": "A0A287A7Y9", "url": "https://omabrowser.org/oma/group/A0A287A7Y9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q0IIE6-1", "protein_name": "ELMO domain-containing protein 1", "gene_name": "ELMOD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKHFLRMLIQVCLFFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIDDIMELKKINPDINPQLGISLQACLLQIVGYRNLIADVEKLRRESYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDMALCPHFAASEGLINM", "length": 326 }, "evidence": [ { "id": "A0A287A7Y9", "url": "https://omabrowser.org/oma/group/A0A287A7Y9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3V1U8-1", "protein_name": "ELMO domain-containing protein 1", "gene_name": "Elmod1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFLRMLIQVCLYFYCKFLWRCMKFVMRKLTGRCELQRICYGTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIDDIMELKKINPDINPQLGISLQACLLQIVGYRNLIADVEKLRREPYDSDNPQHEEMLLKLWELLKPNTPLESRVSKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATVAQQVLSDSVHPKCSKFSKIEWEKKKMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDMALCPHFAASEGLINM", "length": 326 }, "evidence": [ { "id": "A0A287A7Y9", "url": "https://omabrowser.org/oma/group/A0A287A7Y9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N336-1", "protein_name": "ELMO domain-containing protein 1", "gene_name": "ELMOD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDMALCPHFAASEGLINM", "length": 334 }, "evidence": [ { "id": "A0A287A7Y9", "url": "https://omabrowser.org/oma/group/A0A287A7Y9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287A7Y9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AD33-1", "uniprot_ac": "A0A287AD33", "uniprot_id": "A0A287AD33_PIG", "mass": { "chemical_mass": 146073.0, "monoisotopic_mass": 146073.0 }, "refseq": { "ac": "XP_020931534", "name": "WD repeat-containing protein 17 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931534" }, "gene_names": [ { "name": "WDR17", "type": "recommended", "evidence": [ { "id": "A0A287AD33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AD33" } ] }, { "name": "WDR17", "type": "synonym", "evidence": [ { "id": "XP_020931534", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931534" } ] } ], "protein_names": [ { "name": "WD repeat domain 17", "type": "synonym", "evidence": [ { "id": "A0A287AD33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AD33/entry#names_and_taxonomy" } ] }, { "name": "WD repeat-containing protein 17 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020931534", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931534" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AD33", "url": "https://www.uniprot.org/uniprotkb/A0A287AD33" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDR17", "url": "https://www.uniprot.org/uniprotkb/A0A287AD33", "locus": { "chromosome": "15", "start_pos": 38706214, "end_pos": 38589633, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015766", "url": "https://www.ensembl.org/id/ENSSSCG00000015766" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015766", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015766", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157060", "url": "https://www.ncbi.nlm.nih.gov/gene/100157060", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011045", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011045", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR44464", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44464", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44464:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44464:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020931534", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931534", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZME6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZME6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZME6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZME6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AD33", "url": "https://www.uniprot.org/uniprotkb/A0A287AD33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AD33-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD33-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMI6", "url": "https://www.uniprot.org/uniprotkb/A0A287AMI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMI6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B089", "url": "https://www.uniprot.org/uniprotkb/A0A287B089", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B089-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B089-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RT31", "url": "https://www.uniprot.org/uniprotkb/F1RT31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RT31-1", "url": "https://www.uniprot.org/uniprotkb/F1RT31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAWMTYISHWFEQDDWYEGLQRANMSQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYVYQLDHRYNEFKLHSIMSEHKKTITAISWCPHNPDLFASGSTDNLVIIWNVAEQKVIAKLDNTKGMPASLSWCWNEDDAVAFASHRGPLFIWTISGPDSGVIVHKDTHSFLSDISIFRWHTQKRGKVVLGHIDGSLSIFQAGNKNQKHVLRPDSLEGTDEEDPVTALEWDPLSTDYLLVANLHHGIRLVDSESLCCITTFNLPSTAASVQCLAWVPSAPGMFVTGDSQVGVLRIWNVSRTTPVDNIKLKKTGFHCLHVLNSPPRKKFSIQSPTKNHYTSSTSEAVPPPTLTQNQAFSLPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLNCIAGATSRNGAFIWDIKKGKMVQRFNEHGKNGIFCISWSHKDSKRIATCSGDGYCVIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNVRVYYMATSSDQPLKVFSGHTEKVFHVRWSPLREGILCSGSDDGSVRIWDYTQDACINILSGHTAPVRGLMWNTEIPYLLVSGSWDYTIKVWDTREGACLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLTPLITPLQINILADRSWEEIIGNTDGAIEHGTPPLLCGKVSRDIKQEVEKLTGNPRMKKLRWFSEFLSPPGGSDNLWNLVAVITGQDDSLLPQNYSKGIMHLKHLVKFRTSEAQELTTVKMSKFGGGIGVPTKEERLKEAAEIYLRLGQIQRYCELMVELGEWDKALSVAPGVSVKYWKKLMQRRADQLIQEDKDDVIPYCIAIGDVKKLVNFFMLRGQLKEALLVAQAACEGNMQTFHVPTPKGSSHSDDIYKEDFNELLQEACKELAEWYFQDGHAVLAACCHLAVDNIEVAMAYLIRGNELELAVSVGTVLGEPAASATHYALELLARKCMMVPTWNLAADLLLMIPDSELQLVKLCAFYPGCMEEINDLHAKCKLPTVEECMRLAEMAHADGNLFETIKYYLLSQEPEKALPIGIDFIKEYISSSNWTLDTIYPILDLLSYIRTEKLVLHTCTEARNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRKVSVPLKIEHLSEELDAWRACTQSTNPSSEESSYTPPSDSQRMVYATLLKRLKEEPLRGIVGPDYVTGSNLPSHSDIHISCLTGLKIQGPVFLLEDGKSTISLNDALMWAKVNPFSPLGTGLRLNPF", "length": 1307, "header": "tr|A0A287AD33-1|A0A287AD33_PIG Isoform 1 of WD repeat domain 17 OS=Sus scrofa OX=9823 GN=WDR17 PE=1 SV=1 CANONICAL=A0A287AD33-1" }, "isoforms": [ { "isoform_ac": "A0A286ZME6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD33/entry#A0A286ZME6-1", "sequence": { "sequence": "MAWMTYISHWFEQDDWYEGLQRANMSQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYVYQLDHRYNEFKLHSIMSEHKKTITAISWCPHNPDLFASGSTDNLVIIWNVAEQKVIAKLDNTKDSQVGVLRIWNVSRTTPVDNIKLKKTGFHCLHVLNSPPRKKFSIQSPTKNHYTSSTSEAVPPPTLTQNQAFSLPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLNCIAGATSRNGAFIWDIKKGKMVQRFNEHGKNGIFCISWSHKDSKRIATCSGDGYCVIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNVRVYYMATSSDQPLKVFSGHTEKVFHVRWSPLREGILCSGSDDGSVRIWDYTQDACINILSGHTAPVRGLMWNTEIPYLLVSGSWDYTIKVWDTREGACLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLTPLITPLQINILADRSWEEIIGNTDGAIEHGTPPLLCGKVSRDIKQEVEKLTGNPRMKKLRWFSEFLSPPGGSDNLWNLVAVITGQDDSLLPQNYSKGIMHLKHLVKFRTSEAQELTTVKMSKFGGGIGVPTKEERLKEAAEIYLRLGQIQRYCELMVELGEWDKALSVAPGVSVKYWKKLMQRRADQLIQEDKDDVIPYCIAIGDVKKLVNFFMLRGQLKEALLVAQAACEGNMQTFHVPTPKGSSHSDDIYKEDFNELLQEACKELAEWYFQDGHAVLAACCHLAVDNIEVAMAYLIRGNELELAVSVGTVLGEPAASATHYALELLARKCMMVPTWNLAADLLLMIPDSELQLVKLCAFYPGCMEEINDLHAKCKLPTVEECMRLAEMAHADGNLFETIKYYLLSQEPEKALPIGIDFIKEYISSSNWTLDTIYPILDLLSYIRTEKLVLHTCTEARNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRKVSVPLKIEHLSEELDAWRACTQSTNPSSEESSYTPPSDSQRMVYATLLKRLKEEPLRGIVGPDYVTGSNLPSHSDIHISCLTGLKIQGPVFLLEDGKSTISLNDALMWAKVNPFSPLGTGLRLNPF", "length": 1146, "header": "tr|A0A286ZME6-1|A0A287AD33_PIG Computationally mapped isoform of WD repeat domain 17 OS=Sus scrofa OX=9823 GN=WDR17 PE=1 SV=1 CANONICAL=A0A287AD33-1" }, "locus": { "chromosome": "15", "start_pos": 38694255, "end_pos": 38614742, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047965.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047965.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032634.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032634.2" } ] } }, { "isoform_ac": "A0A287AD33-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD33/entry#A0A287AD33-1", "sequence": { "sequence": "MAWMTYISHWFEQDDWYEGLQRANMSQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYVYQLDHRYNEFKLHSIMSEHKKTITAISWCPHNPDLFASGSTDNLVIIWNVAEQKVIAKLDNTKGMPASLSWCWNEDDAVAFASHRGPLFIWTISGPDSGVIVHKDTHSFLSDISIFRWHTQKRGKVVLGHIDGSLSIFQAGNKNQKHVLRPDSLEGTDEEDPVTALEWDPLSTDYLLVANLHHGIRLVDSESLCCITTFNLPSTAASVQCLAWVPSAPGMFVTGDSQVGVLRIWNVSRTTPVDNIKLKKTGFHCLHVLNSPPRKKFSIQSPTKNHYTSSTSEAVPPPTLTQNQAFSLPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLNCIAGATSRNGAFIWDIKKGKMVQRFNEHGKNGIFCISWSHKDSKRIATCSGDGYCVIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNVRVYYMATSSDQPLKVFSGHTEKVFHVRWSPLREGILCSGSDDGSVRIWDYTQDACINILSGHTAPVRGLMWNTEIPYLLVSGSWDYTIKVWDTREGACLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLTPLITPLQINILADRSWEEIIGNTDGAIEHGTPPLLCGKVSRDIKQEVEKLTGNPRMKKLRWFSEFLSPPGGSDNLWNLVAVITGQDDSLLPQNYSKGIMHLKHLVKFRTSEAQELTTVKMSKFGGGIGVPTKEERLKEAAEIYLRLGQIQRYCELMVELGEWDKALSVAPGVSVKYWKKLMQRRADQLIQEDKDDVIPYCIAIGDVKKLVNFFMLRGQLKEALLVAQAACEGNMQTFHVPTPKGSSHSDDIYKEDFNELLQEACKELAEWYFQDGHAVLAACCHLAVDNIEVAMAYLIRGNELELAVSVGTVLGEPAASATHYALELLARKCMMVPTWNLAADLLLMIPDSELQLVKLCAFYPGCMEEINDLHAKCKLPTVEECMRLAEMAHADGNLFETIKYYLLSQEPEKALPIGIDFIKEYISSSNWTLDTIYPILDLLSYIRTEKLVLHTCTEARNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRKVSVPLKIEHLSEELDAWRACTQSTNPSSEESSYTPPSDSQRMVYATLLKRLKEEPLRGIVGPDYVTGSNLPSHSDIHISCLTGLKIQGPVFLLEDGKSTISLNDALMWAKVNPFSPLGTGLRLNPF", "length": 1307, "header": "tr|A0A287AD33-1|A0A287AD33_PIG Isoform 1 of WD repeat domain 17 OS=Sus scrofa OX=9823 GN=WDR17 PE=1 SV=1 CANONICAL=A0A287AD33-1" }, "locus": { "chromosome": "15", "start_pos": 38694255, "end_pos": 38614742, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051513.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051513.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041799.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041799.1" } ] } }, { "isoform_ac": "A0A287AMI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD33/entry#A0A287AMI6-1", "sequence": { "sequence": "MAWMTYISHWFEQDDWYEGLQRANMSQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYVYQLDHRYNEFKLHSIMSEHKKTITAISWCPHNPDLFASGSTDNLVIIWNVAEQKVIAKLDNTKGMPASLSWCWNEDDAVAFASHRGPLFIWTISGPDSGVIVHKDTHSFLSDISIFRWHTQKRGKVVLGHIDGSLSIFQAGNKNQKHVLRPDSLEGTDEEDPVTALEWDPLSTDYLLVANLHHGIRLVDSESLCCITTFNLPSTAASVQCLAWVPSAPGMFVTGDSQVGVLRIWNVSRTTPVDNIKLKKTGFHCLHVLNSPPRKKFSIQSPTKNHYTSSTSEAVPPPTLTQNQAFSLPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLNCIAGATSRNGAFIWDIKKGKMVQRFNEHGKNGIFCISWSHKDSKRIATCSGDGYCVIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNVRVYYMATSSDQPLKVFSGHTEKVFHVRWSPLREGILCSGSDDGSVRIWDYTQDACINILSGHTAPVRGLMWNTEIPYLLVSGSWDYTIKVWDTREGACLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLTPLITPLQINILADRSWEEIIGNTDGAIEHGTPPLLCGKVSRDIKQEVEKLTGNPRMKKLRWFSEFLSPPGGSDNLWNLVAVITGQDDSLLPQNYSKGIMHLKHLVKFRTWDKALSVAPGVSVKYWKKLMQRRADQLIQEDKDDVIPYCIAIGDVKKLVNFFMLRGQLKEALLVAQAACEGNMQTFHVPTPKGSSHSDDIYKEDFNELLQEACKELAEWYFQDGHAVLAACCHLAVDNIEVAMAYLIRGNELELAVSVGTVLGEPAASATHYALELLARKCMMVPTWNLAADLLLMIPDSELQLVKLCAFYPGCMEEINDLHAKCKLPTVEECMRLAEMAHADGNLFETIKYYLLSQEPEKALPIGIDFIKEYISSSNWTLDTIYPILDLLSYIRTEKLVLHTCTEARNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRKVSVPLKIEHLSEELDAWRACTQSTNPSSEESSYTPPSDSQRMVYATLLKRLKEEPLRGIVGPDYVTGSNLPSHSDIHISCLTGLKIQGPVFLLEDGKSTISLNDALMWAKVNPFSPLGTGLRLNPF", "length": 1255, "header": "tr|A0A287AMI6-1|A0A287AMI6_PIG Computationally mapped isoform of WD repeat domain 17 OS=Sus scrofa OX=9823 GN=WDR17 PE=1 SV=1 CANONICAL=A0A287AD33-1" }, "locus": { "chromosome": "15", "start_pos": 38694255, "end_pos": 38614742, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039829.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039829.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045255.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045255.1" } ] } }, { "isoform_ac": "A0A287B089-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD33/entry#A0A287B089-1", "sequence": { "sequence": "MAWMTYISHWFEQDDWYEGLQRANMSQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYVYQLDHRYNEFKLHSIMSEHKKTITAISWCPHNPDLFASGSTDNLVIIWNVAEQKVIAKLDNTKGMPASLSWCWNEDDAVAFASHRGPLFIWTISGPDSGVIVHKDTHSFLSDISIFRWHTQKRGKVVLGHIDGSLSIFQADSQVGVLRIWNVSRTTPVDNIKLKKTGFHCLHVLNSPPRKKFSIQSPTKNHYTSSTSEAVPPPTLTQNQAFSLPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLNCIAGATSRNGAFIWDIKKGKMVQRFNEHGKNGIFCISWSHKDSKRIATCSGDGYCVIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNVRVYYMATSSDQPLKVFSGHTEKVFHVRWSPLREGILCSGSDDGSVRIWDYTQDACINILSGHTAPVRGLMWNTEIPYLLVSGSWDYTIKVWDTREGACLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLTPLITPLQINILADRSWEEIIGNTDGAIEHGTPPLLCGKVSRDIKQEVEKLTGNPRMKKLRWFSEFLSPPGGSDNLWNLVAVITGQDDSLLPQNYSKGIMHLKHLVKFRTSEAQELTTVKMSKFGGGIGVPTKEERLKEAAEIYLRLGQIQRYCELMVELGEWDKALSVAPGVSVKYWKKLMQRRADQLIQEDKDDVIPYCIAIGDVKKLVNFFMLRGQLKEALLVAQAACEGNMQTFHVPTPKGSSHSDDIYKEDFNELLQEACKELAEWYFQDGHAVLAACCHLAVDNIEVAMAYLIRGNELELAVSVGTVLGEPAASATHYALELLARKCMMVPTWNLAADLLLMIPDSELQLVKLCAFYPGCMEEINDLHAKCKLPTVEECMRLAEMAHADGNLFETIKYYLLSQEPEKALPIGIDFIKEYISSSNWTLDTIYPILDLLSYIRTEKLVLHTCTEARNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRKVSVPLKIEHLSEELDAWRACTQSTNPSSEESSYTPPSDSQRMVYATLLKRLKEEPLRGIVGPDYVTGSNLPSHSDIHISCLTGLKIQGPVFLLEDGKSTISLNDALMWAKVNPFSPLGTGLRLNPF", "length": 1223, "header": "tr|A0A287B089-1|A0A287B089_PIG Computationally mapped isoform of WD repeat domain 17 OS=Sus scrofa OX=9823 GN=WDR17 PE=1 SV=1 CANONICAL=A0A287AD33-1" }, "locus": { "chromosome": "15", "start_pos": 38694255, "end_pos": 38614742, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061858.2", "url": "https://www.ensembl.org/id/ENSSSCT00000061858.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049820.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049820.1" } ] } }, { "isoform_ac": "F1RT31-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD33/entry#F1RT31-1", "sequence": { "sequence": "MAWMTYISHWFEQDDWYEGLQRANMSQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYVYQLDHRYNEFKLHSIMSEHKKTITAISWCPHNPDLFASGSTDNLVIIWNVAEQKVIAKLDNTKGMPASLSWCWNEDDAVAFASHRGPLFIWTISGPDSGVIVHKDTHSFLSDISIFRWHTQKRGKVVLGHIDGSLSIFQAGNKNQKHVLRPDSLEGTDEEDPVTALEWDPLSTDYLLVANLHHGIRLVDSESLCCITTFNLPSTAASVQCLAWVPSAPGMFVTGDSQVGVLRIWNVSRTTPVDNIKLKKTGFHCLHVLNSPPRKKFSIQSPTKNHYTSSTSEAVPPPTLTQNQAFSLPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGDLNCIAGATSRNGAFIWDIKKGKMVQRFNEHGKNGIFCISWSHKDSKRIATCSGDGYCVIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNVRVYYMATSSDQPLKVFSGHTEKVFHVRWSPLREGILCSGSDDGSVRIWDYTQDACINILSGHTAPVRGLMWNTEIPYLLVSGSWDYTIKVWDTREGACLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLTPLITPLQINILADRSWEEIIGNTDGAIEHGTPPLLCGKVSRDIKQEVEKLTGNPRMKKLRWFSEFLSPPGGSDNLWNLVAVITGQDDSLLPQNYSKGIMHLKHLVKFRTSEAQELTTVKMSKFGGGIGVPTKEERLKEAAEIYLRLGQIQRYCELMVELGEWDKALSVAPGVSVKYWKKLMQRRADQLIQEDKDDVIPYCIAIGDVKKLVNFFMLRGQLKEALLVAQAACEGNMQTFHVPTPKGSSHSDDIYKEDFNELLQEACKELAEWYFQDGHAVLAACCHLAVDNIEVAMAYLIRGNELELAVSVGTVLGEPAASATHYALELLARKCMMVPTCFPSVGYSFPFCYMNRNLAADLLLMIPDSELQLVKLCAFYPGCMEEINDLHAKCKLPTVEECMRLAEMAHADGNLFETIKYYLLSQEPEKALPIGIDFIKEYISSSNWTLDTIYPILDLLSYIRTEKLVLHTCTEARNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRKVSVPLKIEHLSEELDAWRACTQSTNPSSEESSYTPPSDSQRMVYATLLKRLKEEPLRGIVGPDYVTGSNLPSHSDIHISCLTGLKIQGPVFLLEDGKSTISLNDALMWAKVNPFSPLGTGLRLNPF", "length": 1322, "header": "tr|F1RT31-1|A0A287AD33_PIG Computationally mapped isoform of WD repeat domain 17 OS=Sus scrofa OX=9823 GN=WDR17 PE=1 SV=4 CANONICAL=A0A287AD33-1" }, "locus": { "chromosome": "15", "start_pos": 38694255, "end_pos": 38614742, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017167.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017167.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016706.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016706.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZME6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZME6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1112, "end_pos": 1114, "annotation": "n_glycosylation_sequon" }, { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" }, { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" }, { "start_pos": 776, "end_pos": 778, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1112, "end_pos": 1114 }, { "start_pos": 24, "end_pos": 26 }, { "start_pos": 298, "end_pos": 300 }, { "start_pos": 776, "end_pos": 778 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AE39-1", "uniprot_ac": "A0A287AE39", "uniprot_id": "A0A287AE39_PIG", "mass": { "chemical_mass": 77609.0, "monoisotopic_mass": 77609.0 }, "refseq": { "ac": "XP_003129942", "name": "RING finger protein 214 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129942" }, "gene_names": [ { "name": "RNF214", "type": "recommended", "evidence": [ { "id": "A0A287AE39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AE39" } ] }, { "name": "RNF214", "type": "synonym", "evidence": [ { "id": "XP_003129942", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129942" } ] } ], "protein_names": [ { "name": "RING finger protein 214 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003129942", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129942" } ] }, { "name": "Ring finger protein 214", "type": "synonym", "evidence": [ { "id": "A0A287AE39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AE39/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AE39", "url": "https://www.uniprot.org/uniprotkb/A0A287AE39" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RNF214", "url": "https://www.uniprot.org/uniprotkb/A0A287AE39", "locus": { "chromosome": "9", "start_pos": 44642109, "end_pos": 44597007, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015077", "url": "https://www.ensembl.org/id/ENSSSCG00000015077" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015077", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015077", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16477", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16477", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100510972", "url": "https://www.ncbi.nlm.nih.gov/gene/100510972", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100510972", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100510972", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AGMEPGW", "url": "https://omabrowser.org/oma/group/AGMEPGW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AE39", "url": "https://www.orthodb.org/?gene=A0A287AE39", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SB99", "url": "https://www.orthodb.org/?gene=F1SB99", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15727", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15727", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15727:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15727:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24525", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24525", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24905", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24905", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129942", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129942", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZMT3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZMT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AE39", "url": "https://www.uniprot.org/uniprotkb/A0A287AE39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AE39-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AE39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SB99", "url": "https://www.uniprot.org/uniprotkb/F1SB99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SB99-1", "url": "https://www.uniprot.org/uniprotkb/F1SB99-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMAASEVAGVVATAPSPPDSSSSVCASKPDEGLPDGLSPKDPAQKHQNSSLSSVSSQTITKENNRNAQLEHSEQNPGSSAGDTSAAHRAVLGENLMATALCLSGGGSQSDSKDMANTAGEEGDTCLRESPHPGTRSLKAGCHTKQPASGNCPEEKAPQASVLKEGSRDTGLDFRPVVPPANGVEGVRVEQDDDQDSSSLKLSQNIAVQTDFKTADSEVNTDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEILKAIQDVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGEINRNIMEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQLVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPNPSLAPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQPNQPSPPLPGSHGRNSPGLGSLVGPHGPHVPPAASIPPPPGLGGVKASTETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLVAARLAEHERVAASTQPLGRIRALFPAPLAQISTPMFLPSAQVSYPGRSSHAPATCKLCLMCQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTCPFCPTLK", "length": 705, "header": "tr|A0A287AE39-1|A0A287AE39_PIG Isoform 1 of Ring finger protein 214 OS=Sus scrofa OX=9823 GN=RNF214 PE=1 SV=1 CANONICAL=A0A287AE39-1" }, "isoforms": [ { "isoform_ac": "A0A286ZMT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AE39/entry#A0A286ZMT3-1", "sequence": { "sequence": "MCFQTRRRSPRWSKPQRPCTEAPELVSVKCDTSAAHRAVLGENLMATALCLSGGGSQSDSKDMANTAGEEGDTCLRESPHPGTRSLKAGCHTKQPASGNCPEEKAPQASVLKEGSRDTGLDFRPVVPPANGVEGVRVEQDDDQDSSSLKLSQNIAVQTDFKTADSEVNTDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEILKAIQDVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGEINRNIMEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQLVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPNPSLAPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQPNQPSPPLPGSHGRNSPGLGSLVGPHGPHVPPAASIPPPPGLGGVKASTETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLVAARLAEHERVAASTQPLGRIRALFPAPLAQISTPMFLPSAQVSYPGRSSHAPATCKLCLMCQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTCPFCPTLK", "length": 654, "header": "tr|A0A286ZMT3-1|A0A287AE39_PIG Computationally mapped isoform of Ring finger protein 214 OS=Sus scrofa OX=9823 GN=RNF214 PE=1 SV=1 CANONICAL=A0A287AE39-1" }, "locus": { "chromosome": "9", "start_pos": 44639840, "end_pos": 44598670, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066069.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066069.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032764.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032764.1" } ] } }, { "isoform_ac": "A0A287AE39-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AE39/entry#A0A287AE39-1", "sequence": { "sequence": "MMAASEVAGVVATAPSPPDSSSSVCASKPDEGLPDGLSPKDPAQKHQNSSLSSVSSQTITKENNRNAQLEHSEQNPGSSAGDTSAAHRAVLGENLMATALCLSGGGSQSDSKDMANTAGEEGDTCLRESPHPGTRSLKAGCHTKQPASGNCPEEKAPQASVLKEGSRDTGLDFRPVVPPANGVEGVRVEQDDDQDSSSLKLSQNIAVQTDFKTADSEVNTDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEILKAIQDVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGEINRNIMEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQLVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPNPSLAPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQPNQPSPPLPGSHGRNSPGLGSLVGPHGPHVPPAASIPPPPGLGGVKASTETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLVAARLAEHERVAASTQPLGRIRALFPAPLAQISTPMFLPSAQVSYPGRSSHAPATCKLCLMCQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTCPFCPTLK", "length": 705, "header": "tr|A0A287AE39-1|A0A287AE39_PIG Isoform 1 of Ring finger protein 214 OS=Sus scrofa OX=9823 GN=RNF214 PE=1 SV=1 CANONICAL=A0A287AE39-1" }, "locus": { "chromosome": "9", "start_pos": 44639840, "end_pos": 44598599, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053444.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053444.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042237.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042237.1" } ] } }, { "isoform_ac": "F1SB99-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AE39/entry#F1SB99-1", "sequence": { "sequence": "MMAASEVAGVVATAPSPPDSSSSVCASKPDEGLPDGLSPKDPAQKHQNSSLSSVSSQTITKENNRNAQLEHSEQNPGSSAGDTSAAHRAVLGENLMATALCLSGGGSQSDSKDMANTAGEEGDTCLRESPHPGTRSLKAGCHTKQPASGNCPEEKAPQASVLKEGSRDTGLDFRPVVPPANGVEGVRVEQDDDQDSSSLKLSQNIAVQTDFKTADSEVNTDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEILKAIQDVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGEINRNIMEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQLVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPNPSLAPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQPNQPSPPLPGSHGRNSPGLGSLVGPHGPHVPPAASIPPPPGLGGVKASTETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLVAARLAEHERVAASTQAPATCKLCLMCQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTCPFCPTLK", "length": 670, "header": "tr|F1SB99-1|A0A287AE39_PIG Computationally mapped isoform of Ring finger protein 214 OS=Sus scrofa OX=9823 GN=RNF214 PE=1 SV=2 CANONICAL=A0A287AE39-1" }, "locus": { "chromosome": "9", "start_pos": 44639840, "end_pos": 44598599, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016443.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016443.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016001.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016001.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SB99", "url": "https://www.uniprot.org/uniprotkb/F1SB99" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100510972", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100510972", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3IAK3-1", "protein_name": "RING finger protein 214 isoform X1", "gene_name": "Rnf214", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAASEVAGVGASAPSPSESSTLCASKTDDALPDGLSLKDSAQKQKNSSPPSVSSQMINKESNRNAHLEHPEQNPGSSASDTSAAHLEVLGENLVATALCLSGSGSQSDLKDLTSPAGEEGDTSLRESLHPVTRSLKAGCHSKQLASRNCSEERAPAASILKEGSRDAGLDFRPVVPPANGVEGVRVDQDDDQDSSSPKLSQNIAVQTDFKTADSEVNTDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEILKAIQDVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKTQDGEINRNIMEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQLVRNGAKLSSLPQIPTPTLPPPPSEADFMLQVFQPSPSLTPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQSSQSSPPLPGSHGRNSPGLGSLVSPHGPHMPPAASIPPPPGLGGIKASTETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLVAARLAEHERVASSTQPLGRIRALYPAPLAQISTPMFLPSAQVSYPGRSSHAPPTCKLCLMCQKLVQPSELHPMACTHALHKECIKFWAQTNTNDTCPFCPTLK", "length": 703 }, "evidence": [ { "id": "A0A287AE39", "url": "https://omabrowser.org/oma/group/A0A287AE39/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8BFU3-1", "protein_name": "RING finger protein 214", "gene_name": "Rnf214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAASEVAGLGAGTPSPSESSALCASKSDESLPDGLSPKDSAQKQKNLSPPSVSSQMITKESNRNAHLEHPEQNPGSSVGDTSAAHEEVVGENLVATALCLSGNGSQSDLKDLTNPAGEEGDTSLRESLHPVTRSLKAGCHSKQLASGNCSEEKCPAASVLKEGSRDAGLDLLPVVPPANGVEGVRVDQDDDQDSSSLKLSQNIAVQTDFKTADSEVNTDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVESQLQVQLKQLQQRREEEMKNHQEILKAIQDVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGEINRNIMEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQLVRNGAKLSSLPQIPTPTLPPPPSEADFMLQVFQPSPSLTPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQSSQPSPPLPGSHGRNSPGLGSLVSPHGPHMPPAASIPPPPGLGGIKASSETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLVAARLAEHERVASSTQAPPTCKLCLMCQKLVQPSELHPMACTHALHKECIKFWAQTNTNDTCPFCPTLK", "length": 668 }, "evidence": [ { "id": "A0A287AE39", "url": "https://omabrowser.org/oma/group/A0A287AE39/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8ND24-1", "protein_name": "RING finger protein 214", "gene_name": "RNF214", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASEVAGVVANAPSPPESSSLCASKSDEGLPDGLSTKDSAQKQKNSPLLSVSSQTITKENNRNVHLEHSEQNPGSSAGDTSAAHQVVLGENLIATALCLSGSGSQSDLKDVASTAGEEGDTSLRESLHPVTRSLKAGCHTKQLASRNCSEEKSPQTSILKEGNRDTSLDFRPVVSPANGVEGVRVDQDDDQDSSSLKLSQNIAVQTDFKTADSEVNTDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEILKAIQDVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGEINRNIMEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQLVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPSPSLAPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQPSQPSSPLPGSHGRNSPGLGSLVSPHGPHMPPAASIPPPPGLGGVKASAETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLVAARLAEHERVAASTQPLGRIRALFPAPLAQISTPMFLPSAQVSYPGRSSHAPATCKLCLMCQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTCPFCPTLK", "length": 703 }, "evidence": [ { "id": "A0A287AE39", "url": "https://omabrowser.org/oma/group/A0A287AE39/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE39", "url": "https://www.uniprot.org/uniprotkb/A0A287AE39" } ], "pmid": "" }, { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE39", "url": "https://www.uniprot.org/uniprotkb/A0A287AE39" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 695, "end_pos": 697, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AE39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AE39" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 660, "end_pos": 701, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 48, "end_pos": 50 }, { "start_pos": 695, "end_pos": 697 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A9Z6-1", "uniprot_ac": "A0A287A9Z6", "uniprot_id": "A0A287A9Z6_PIG", "mass": { "chemical_mass": 134871.0, "monoisotopic_mass": 134871.0 }, "refseq": { "ac": "XP_005671786", "name": "sorbin and SH3 domain-containing protein 2 isoform X8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671786" }, "gene_names": [ { "name": "SORBS2", "type": "recommended", "evidence": [ { "id": "A0A287A9Z6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6" } ] }, { "name": "SORBS2", "type": "synonym", "evidence": [ { "id": "XP_005671786", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671786" } ] } ], "protein_names": [ { "name": "Sorbin and SH3 domain containing 2", "type": "synonym", "evidence": [ { "id": "A0A287A9Z6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6/entry#names_and_taxonomy" } ] }, { "name": "sorbin and SH3 domain-containing protein 2 isoform X8", "type": "synonym", "evidence": [ { "id": "XP_005671786", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671786" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A9Z6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SORBS2", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6", "locus": { "chromosome": "15", "start_pos": 46585602, "end_pos": 46795038, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036679", "url": "https://www.ensembl.org/id/ENSSSCG00000036679" } ] } } ], "crossref": [ { "id": "A0A287A9Z6", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A9Z6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036679", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036679", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11917", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11917", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11920", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11920", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11923", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11923", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "396719", "url": "https://www.ncbi.nlm.nih.gov/gene/396719", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003127", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003127", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050384", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050384", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A287A9Z6", "url": "https://www.orthodb.org/?gene=A0A287A9Z6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14167", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14167", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14167:SF56", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14167:SF56", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14604", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14604", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005671786", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671786", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZN88", "url": "https://www.uniprot.org/uniprotkb/A0A286ZN88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZN88-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZN88-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A372", "url": "https://www.uniprot.org/uniprotkb/A0A287A372", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A372-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A372-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A3L8", "url": "https://www.uniprot.org/uniprotkb/A0A287A3L8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A3L8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3L8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9Z6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMA6", "url": "https://www.uniprot.org/uniprotkb/A0A287AMA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMA6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZH8", "url": "https://www.uniprot.org/uniprotkb/A0A287AZH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZQ2", "url": "https://www.uniprot.org/uniprotkb/A0A287AZQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKF4", "url": "https://www.uniprot.org/uniprotkb/A0A287BKF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKF4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZN9", "url": "https://www.uniprot.org/uniprotkb/F1RZN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZN9-1", "url": "https://www.uniprot.org/uniprotkb/F1RZN9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNTDSGGCARKRAAMSVTLTSVKRVQSSPNLLATGRDSQSPDSAWRCYNDRNQETLNGDATYSSLAAKGFRSVRPNLQEKKSPTQSQITVNGNSGGTVSPMSYYQRPFSPSAYSLPGSFNSSIIMQHGRSLDSTDTYPQHAQSLDGTMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDDDTDMYNTPYTYNAGLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKDASSPVPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPASLYQSSIDRSLERPASSASMASDFRKRRKSEPAVGQPRGLGDPSASRTSPGRADLPGSSTTLTKSFISSSPSSPSRAKGGDDSKMCPSLCSYSGLNGNPSHELDYCNTYRQHLDVPHDSQRAIAFKNGWQMARQNAEVWSSTEETVSPKIKSRSCDDLLNDDCDSFPDPKTKSESMGSLLCEEDSKESCPIPWASPYIQEGRSRLRYRSAHNAPGFLKMYKKMHRINRKDLMNSEVICSVKSRIMQYEKEQQHKGLLHGWSQSSTEEVPRDMVPTRISEFEKLIQKSKSMPNLGDEMLSPVTLEPQQNGLCPKRRFSIESLLEEENQSRHPSQVQRSYTSKTLVPIHIEVTSDEQPRTHMEFSDSDQDGVVSDHSDYIHVEGSSFCSESDFDHFSFTSSESFYGSSHHHHHHHHHHHRHLISTCKGRCPASYTRFTTMLKHERAKHENTEEPRRQEMDPGLSKLAFLVSPVPFRRKKNSTPKKQTEKAKCKASVFEALDSALKDICDQIKAEKRRGSLPDNSILHRLISELLPDIPERNSSLKALKRSPMHQPFHPLPQDGAIHCPLYQNDCGRLPHSASFPDDTNNNYHQDHDSALSLQDHESPRSYSSTLTDLGRSTSRERRVTPEKEKLPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQLGEIGEAVAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKKNTTKGAEEYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL", "length": 1196, "header": "tr|A0A287A9Z6-1|A0A287A9Z6_PIG Isoform 1 of Sorbin and SH3 domain containing 2 OS=Sus scrofa OX=9823 GN=SORBS2 PE=1 SV=3 CANONICAL=A0A287A9Z6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZN88-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6/entry#A0A286ZN88-1", "sequence": { "sequence": "GNLHTPQTVDRPKDWYKTMFKQIHMVHKPGLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKDASSPVPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPASLYQSSIDRSLERPASSASMASDFRKRRKSEPAVGQPRGLGDPSASRTSPGRADLPGSSTTLTKSFISSSPSSPSRAKGGDDSKMCPSLCSYSGLNGNPSHELDYCNTYRQHLDVPHDSQRAIAFKNGWQMARQNAEVWSSTEETVSPKIKSRSCDDLLNDDCDSFPDPKTKSESMGSLLCEEDSKESCPIPWASPYIQEGRSRLRYRSAHNAPGFLKMYKKMHRINRKDLMNSEVICSVKSRIMQYEKEQQHKGLLHGWSQSSTEEVPRDMVPTRISEFEKLIQKSKSMPNLGDEMLSPVTLEPQQNGLCPKRRFSIESLLEEENQSRHPSQVQRSYTSKTLVPIHIEVTSDEQPRTHMEFSDSDQDGVVSDHSDYIHVEGSSFCSESDFDHFSFTSSESFYGSSHHHHHHHHHHHRHLISTCKGRCPASYTRFTTMLKHERAKHENTEEPRRQEMDPGLSKLAFLVSPVPFRRKKNSTPKKQTEKAKCKASVFEALDSALKDICDQIKAEKRRGSLPDNSILHRLISELLPDIPERNSSLKALKRSPMHQPFHPLPQDGAIHCPLYQNDCGRLPHSASFPDDTNNNYHQDHDSALSLQDHESPRSYSSTLTDLGRSTSRERRVTPEKENKKHVNVISSRELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQLGEIGEAVAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKKNTTKGAEEYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL", "length": 994, "header": "tr|A0A286ZN88-1|A0A287A9Z6_PIG Computationally mapped isoform of Sorbin and SH3 domain containing 2 OS=Sus scrofa OX=9823 GN=SORBS2 PE=1 SV=3 CANONICAL=A0A287A9Z6-1" }, "locus": { "chromosome": "15", "start_pos": 46650341, "end_pos": 46587700, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057601.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057601.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033092.3", "url": "https://www.ensembl.org/id/ENSSSCP00000033092.3" } ] } }, { "isoform_ac": "A0A287A372-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6/entry#A0A287A372-1", "sequence": { "sequence": "MYMILCQIIFTGLFISLFRVLISTFLFLLGRDSQSPDSAKGFRSVRPNLQEKKSPTQSQITVNGNSGGTVSPMSYYQRPFSPSAYSLPGSFNSSIIMQHGRSLDSTDTYPQHAQSLDGTMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGIPTAIRTVGNASARRSGAVHRLHKGLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKDASSPVPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPASLYQSSIDRSLERPASSASMASDFRKRRKSEPAVGQPRGLGDPSASRTSPGRADLPGSSTTLTKSFISSSPSSPSRAKGGDDSKMCPSLCSYSGLNGNPSHELDYCNTYRQHLDVPHDSQRAIAFKNGWQMARQNAEVWSSTEETVSPKIKSRSCDDLLNDDCDSFPDPKTKSESMGSLLCEEDSKESCPIPWASPYIQEGRSRLRYRSAHNAPGFLKMYKKMHRINRKDLMNSEVICSVKSRIMQYEKEQQHKGLLHGWSQSSTEEVPRDMVPTRISEFEKLIQKSKSMPNLGDEMLSPVTLEPQQNGLCPKRRFSIESLLEEENQSRHPSQVQRSYTSKTLVPIHIEVTSDEQPRTHMEFSDSDQDGVVSDHSDYIHVEGSSFCSESDFDHFSFTSSESFYGSSHHHHHHHHHHHRHLISTCKGRCPASYTRFTTMLKHERAKHENTEEPRRQEMDPGLSKLAFLVSPVPFRRKKNSTPKKQTEKAKCKASVFEALDSALKDICDQIKAEKRRGSLPDNSILHRLISELLPDIPERNSSLKALKRSPMHQPFHPLPQDGAIHCPLYQNDCGRLPHSASFPDDTNNNYHQDHDSALSLQDHESPRSYSSTLTDLGRSTSRERRVTPEKEKLPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQLGEIGEAVAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKKNTTKGAEEYPDPPIPHSYSSDRIHSLSSNKILVLMLSLKRKETLLRVQCTGNFYQYFSSKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL", "length": 1178, "header": "tr|A0A287A372-1|A0A287A9Z6_PIG Computationally mapped isoform of Sorbin and SH3 domain containing 2 OS=Sus scrofa OX=9823 GN=SORBS2 PE=1 SV=2 CANONICAL=A0A287A9Z6-1" }, "locus": { "chromosome": "15", "start_pos": 46674145, "end_pos": 46587700, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047343.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047343.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038403.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038403.2" } ] } }, { "isoform_ac": "A0A287A3L8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6/entry#A0A287A3L8-1", "sequence": { "sequence": "MEVTKENTRKQFMTILHERSHQTYQTWRCYNDRNQETLNGDATYSSLAAKGFRSVRPNLQEKKSPTQAPPLPPRKESFCSSLVTNHTKGDILDQLVTNTQIPSCTELFTNKTPLQGTMYSNDDSNQTILYSEESNTTVSYTQKITNPLPSASGTNAPAKADISTPFLQEDYMQDSQTRRISTLKLIHSQDPGSSIPFNPPQFSKSVEVPSFLKRSCSPPPNPAPEIHTASLSIQITPLSGHGPESHKQPPELSPETAKIPVPPERQKSAGAAASQPSDCQVSQITVNGNSGGTVSPMSYYQRPFSPSAYSLPGSFNSSIIMQHGRSLDSTDTYPQHAQSLDGTMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDDDTDMYNTPYTYNAGLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKDASSPVPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPASLYQSSIDRSLERPASSASMASDFRKRRKSEPAVGQPRGLGDPSASRTSPGRADLPGSSTTLTKSFISSSPSSPSRAKGGDDSKMCPSLCSYSGLNGNPSHELDYCNTYRQHLDVPHDSQRAIAFKNGWQMARQNAEVWSSTEETVSPKIKSRSCDDLLNDDCDSFPDPKTKSESMGSLLCEEDSKESCPIPWASPYIQEGRSRLRYRSAHNAPGFLKMYKKMHRINRKDLMNSEVICSVKSRIMQYEKEQQHKGLLHGWSQSSTEEVPRDMVPTRISEFEKLIQKSKSMPNLGDEMLSPVTLEPQQNGLCPKRRFSIESLLEEENQSRHPSQVQRSYTSKTLVPIHIEVTSDEQPRTHMEFSDSDQDGVVSDHSDYIHVEGSSFCSESDFDHFSFTSSESFYGSSHHHHHHHHHHHRHLISTCKGRCPASYTRFTTMLKHERAKHENTEEPRRQEMDPGLSKLAFLVSPVPFRRKKNSTPKKQTEKAKCKASVFEALDSALKDICDQIKAEKRRGSLPDNSILHRLISELLPDIPERNSSLKALKRSPMHQPFHPLPQDGAIHCPLYQNDCGRLPHSASFPDDTNNNYHQDHDSALSLQDHESPRSYSSTLTDLGRSTSRERRVTPEKEKLPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQLGEIGEAVAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKKNTTKGAEEYPDPPIPHSYSSDRIHSLSSNKVRKHSRILV", "length": 1329, "header": "tr|A0A287A3L8-1|A0A287A9Z6_PIG Computationally mapped isoform of Sorbin and SH3 domain containing 2 OS=Sus scrofa OX=9823 GN=SORBS2 PE=1 SV=2 CANONICAL=A0A287A9Z6-1" }, "locus": { "chromosome": "15", "start_pos": 46755223, "end_pos": 46609899, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062197.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062197.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038548.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038548.3" } ] } }, { "isoform_ac": "A0A287A9Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6/entry#A0A287A9Z6-1", "sequence": { "sequence": "MNTDSGGCARKRAAMSVTLTSVKRVQSSPNLLATGRDSQSPDSAWRCYNDRNQETLNGDATYSSLAAKGFRSVRPNLQEKKSPTQSQITVNGNSGGTVSPMSYYQRPFSPSAYSLPGSFNSSIIMQHGRSLDSTDTYPQHAQSLDGTMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDDDTDMYNTPYTYNAGLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKDASSPVPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPASLYQSSIDRSLERPASSASMASDFRKRRKSEPAVGQPRGLGDPSASRTSPGRADLPGSSTTLTKSFISSSPSSPSRAKGGDDSKMCPSLCSYSGLNGNPSHELDYCNTYRQHLDVPHDSQRAIAFKNGWQMARQNAEVWSSTEETVSPKIKSRSCDDLLNDDCDSFPDPKTKSESMGSLLCEEDSKESCPIPWASPYIQEGRSRLRYRSAHNAPGFLKMYKKMHRINRKDLMNSEVICSVKSRIMQYEKEQQHKGLLHGWSQSSTEEVPRDMVPTRISEFEKLIQKSKSMPNLGDEMLSPVTLEPQQNGLCPKRRFSIESLLEEENQSRHPSQVQRSYTSKTLVPIHIEVTSDEQPRTHMEFSDSDQDGVVSDHSDYIHVEGSSFCSESDFDHFSFTSSESFYGSSHHHHHHHHHHHRHLISTCKGRCPASYTRFTTMLKHERAKHENTEEPRRQEMDPGLSKLAFLVSPVPFRRKKNSTPKKQTEKAKCKASVFEALDSALKDICDQIKAEKRRGSLPDNSILHRLISELLPDIPERNSSLKALKRSPMHQPFHPLPQDGAIHCPLYQNDCGRLPHSASFPDDTNNNYHQDHDSALSLQDHESPRSYSSTLTDLGRSTSRERRVTPEKEKLPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQLGEIGEAVAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKKNTTKGAEEYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL", "length": 1196, "header": "tr|A0A287A9Z6-1|A0A287A9Z6_PIG Isoform 1 of Sorbin and SH3 domain containing 2 OS=Sus scrofa OX=9823 GN=SORBS2 PE=1 SV=3 CANONICAL=A0A287A9Z6-1" }, "locus": { "chromosome": "15", "start_pos": 46684537, "end_pos": 46587700, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042801.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042801.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040830.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040830.3" } ] } }, { "isoform_ac": "A0A287AMA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6/entry#A0A287AMA6-1", "sequence": { "sequence": "MEVTKENTRKQFMTILHERSHQTYQTWRCYNDRNQETLNGDATYSSLAAKGFRSVRPNLQEKKSPTQAPPLPPRKESFCSSLVTNHTKGDILDQLVTNTQIPSCTELFTNKTPLQGTMYSNDDSNQTILYSEESNTTVSYTQKITNPLPSASGTNAPAKADISTPFLQEDYMQDSQTRRISTLKLIHSQDPGSSIPFNPPQFSKSVEVPSFLKRSCSPPPNPAPEIHTASLSIQITPLSGHGPESHKQPPELSPETAKIPVPPERQKSAGAAASQPSDCQVSQITVNGNSGGTVSPMSYYQRPFSPSAYSLPGSFNSSIIMQHGRSLDSTDTYPQHAQSLDGTMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDDDTDMYNTPYTYNAGLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKDASSPVPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPPPLPTTPTPVPRDPGRKPISMSPYGEVTGSPSPPPRTSIPTPSRCTPALSPIWPPKKALDYVQDHSSGVSNEASLYQSSIDRSLERPASSASMASDFRKRRKSEPAVGQPRGLGDPSASRTSPGRADLPGSSTTLTKSFISSSPSSPSRAKDHESPRSYSSTLTDLGRSTSRERRVTPEKEKLPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQLGEIGEAVAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKKNTTKGAEEYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL", "length": 942, "header": "tr|A0A287AMA6-1|A0A287AMA6_PIG Computationally mapped isoform of Sorbin and SH3 domain containing 2 OS=Sus scrofa OX=9823 GN=SORBS2 PE=1 SV=3 CANONICAL=A0A287A9Z6-1" }, "locus": { "chromosome": "15", "start_pos": 46755223, "end_pos": 46587700, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052251.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052251.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045018.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045018.3" } ] } }, { "isoform_ac": "A0A287AZH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6/entry#A0A287AZH8-1", "sequence": { "sequence": "MNTDSGGCARKRAAMSVTLTSVKRVQSSPNLLATGRDSQSPDSAKGFRSVRPNLQEKKSPTQSQITVNGNSGGTVSPMSYYQRPFSPSAYSLPGSFNSSIIMQHGRSLDSTDTYPQHAQSLDGTMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPGLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKDASSPVPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPASLYQSSIDRSLERPASSASMASDFRKRRKSEPAVGQPRGLGDPSASRTSPGRADLPGSSTTLTKSFISSSPSSPSRAKGGDDSKMCPSLCSYSGLNGNPSHELDYCNTYRQHLDVPHDSQRAIAFKNGWQMARQNAEVWSSTEETVSPKIKSRSCDDLLNDDCDSFPDPKTKSESMGSLLCEEDSKESCPIPWASPYIQEGRSRLRYRSAHNAPGFLKMYKKMHRINRKDLMNSEVICSVKSRIMQYEKEQQHKGLLHGWSQSSTEEVPRDMVPTRISEFEKLIQKSKSMPNLGDEMLSPVTLEPQQNGLCPKRRFSIESLLEEENQSRHPSQVQRSYTSKTLVPIHIEVTSDEQPRTHMEFSDSDQDGVVSDHSDYIHVEGSSFCSESDFDHFSFTSSESFYGSSHHHHHHHHHHHRHLISTCKGRCPASYTRFTTMLKHERAKHENTEEPRRQEMDPGLSKLAFLVSPVPFRRKKNSTPKKQTEKAKCKASVFEALDSALKDICDQIKAEKRRGSLPDNSILHRLISELLPDIPERNSSLKALKRSPMHQPFHPLPQDGAIHCPLYQNDCGRLPHSASFPDDTNNNYHQDHDSALSLQDHESPRSYSSTLTDLGRSTSRERRVTPEKEKLPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQLGEIGEAVAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKKNTTKGAEEYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL", "length": 1158, "header": "tr|A0A287AZH8-1|A0A287AZH8_PIG Computationally mapped isoform of Sorbin and SH3 domain containing 2 OS=Sus scrofa OX=9823 GN=SORBS2 PE=1 SV=3 CANONICAL=A0A287A9Z6-1" }, "locus": { "chromosome": "15", "start_pos": 46684537, "end_pos": 46587700, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058939.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058939.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049303.3", "url": "https://www.ensembl.org/id/ENSSSCP00000049303.3" } ] } }, { "isoform_ac": "A0A287AZQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6/entry#A0A287AZQ2-1", "sequence": { "sequence": "MLPDSGGCARKRAAMSVTLTSVKRVQSSPNLLATGRDSQSPDSAKGFRSVRPNLQEKKSPTQSQITVNGNSGGTVSPMSYYQRPFSPSAYSLPGSFNSSIIMQHGRSLDSTDTYPQHAQSLDGTMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDDDTDMYNTPYTYNAGLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKDASSPVPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPASLYQSSIDRSLERPASSASMASDFRKRRKSEPAVGQPRGLGDPSASRTSPGRADLPGSSTTLTKSFISSSPSSPSRAKGGDDSKMCPSLCSYSGLNGNPSHELDYCNTYRQHLDVPHDSQRAIAFKNGWQMARQNAEVWSSTEETVSPKIKSRSCDDLLNDDCDSFPDPKTKSESMGSLLCEEDSKESCPIPWASPYIQEGRSRLRYRSAHNAPGFLKMYKKMHRINRKDLMNSEVICSVKSRIMQYEKEQQHKGLLHGWSQSSTEEVPRDMVPTRISEFEKLIQKSKSMPNLGDEMLSPVTLEPQQNGLCPKRRFSIESLLEEENQSRHPSQVQRSYTSKTLVPIHIEVTSDEQPRTHMEFSDSDQDGVVSDHSDYIHVEGSSFCSESDFDHFSFTSSESFYGSSHHHHHHHHHHHRHLISTCKGRCPASYTRFTTMLKHERAKHENTEEPRRQEMDPGLSKLAFLVSPVPFRRKKNSTPKKQTEKAKCKASVFEALDSALKDICDQIKAEKRRGSLPDNSILHRLISELLPDIPERNSSLKALKRSPMHQPFHPLPQDGAIHCPLYQNDCGRLPHSASFPDDTNNNYHQDHDSALSLQDHESPRSYSSTLTDLGRSTSRERRVTPEKEKLPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQLGEIGEAVAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKKNTTKGAEEYPDPPIPHSYSSDRIHSLSSNKILVLMLSLKRKETLLRVQCTGNFYQYFSSKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL", "length": 1203, "header": "tr|A0A287AZQ2-1|A0A287AZQ2_PIG Computationally mapped isoform of Sorbin and SH3 domain containing 2 OS=Sus scrofa OX=9823 GN=SORBS2 PE=1 SV=3 CANONICAL=A0A287A9Z6-1" }, "locus": { "chromosome": "15", "start_pos": 46679041, "end_pos": 46587700, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039561.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039561.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049627.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049627.2" } ] } }, { "isoform_ac": "A0A287BKF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6/entry#A0A287BKF4-1", "sequence": { "sequence": 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"length": 1424, "header": "tr|A0A287BKF4-1|A0A287BKF4_PIG Computationally mapped isoform of Sorbin and SH3 domain containing 2 OS=Sus scrofa OX=9823 GN=SORBS2 PE=1 SV=3 CANONICAL=A0A287A9Z6-1" }, "locus": { "chromosome": "15", "start_pos": 46679041, "end_pos": 46609899, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039296.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039296.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056992.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056992.2" } ] } }, { "isoform_ac": "F1RZN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6/entry#F1RZN9-1", "sequence": { "sequence": "MCFLLCYGLCYIIFLLPDSGGCARKRAAMSVTLTSVKRVQSSPNLLATDATYSSLAAKGFRSVRPNLQEKKSPTQAPPLPPRKESFCSSLVTNHTKGDILDQLVTNTQIPSCTELFTNKTPLQGTMYSNDDSNQTILYSEESNTTVSYTQKITNPLPSASGTNAPAKADISTPFLQEDYMQDSQTRRISTLKLIHSQDPGSSIPFNPPQFSKSVEVPSFLKRSCSPPPNPAPEIHTASLSIQITPLSGHGPESHKQPPELSPETAKIPVPPERQKSAGAAASQPSDCQVSQITVNGNSGGTVSPMSYYQRPFSPSAYSLPGSFNSSIIMQHGRSLDSTDTYPQHAQSLDGTMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDDDTDMYNTPYTYNAGLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKDASSPVPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPPPLPTTPTPVPRDPGRKPISMSPYGEVTGSPSPPPRTSIPTPSRCTPALSPIWTDRINPDDIDLENEPWYKFFSELEFGRPPPKKALDYVQDHSSGVSNEASLYQSSIDRSLERPASSASMASDFRKRRKSEPAVGQPRGLGDPSASRTSPGRADLPGSSTTLTKSFISSSPSSPSRAKGGDDSKMCPSLCSYSGLNGNPSHELDYCNTYRQHLDVPHDSQRAIAFKNGWQMARQNAEVWSSTEETVSPKIKSRSCDDLLNDDCDSFPDPKTKSESMGSLLCEEDSKESCPIPWASPYIQEGRSRLRYRSAHNAPGFLKMYKKMHRINRKDLMNSEVICSVKSRIMQYEKEQQHKGLLHGWSQSSTEEVPRDMVPTRISEFEKLIQKSKSMPNLGDEMLSPVTLEPQQNGLCPKRRFSIESLLEEENQSRHPSQVQRSYTSKTLVPIHIEVTSDEQPRTHMEFSDSDQDGVVSDHSDYIHVEGSSFCSESDFDHFSFTSSESFYGSSHHHHHHHHHHHRHLISTCKGRCPASYTRFTTMLKHERAKHENTEEPRRQEMDPGLSKLAFLVSPVPFRRKKNSTPKKQTEKAKCKASVFEALDSALKDICDQIKAEKRRGSLPDNSILHRLISELLPDIPERNSSLKALKRSPMHQPFHPLPQDGAIHCPLYQNDCGRLPHSASFPDDTNNNYHQDHDSALSLQDHESPRSYSSTLTDLGRSTSRERRVTPEKENKKHVNVISSRELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPAQLGEIGEAVAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKKNTTKGAEEYPDPPIPHSYSSDRIHSLSSNKVRKHSRILV", "length": 1432, "header": "tr|F1RZN9-1|A0A287A9Z6_PIG Computationally mapped isoform of Sorbin and SH3 domain containing 2 OS=Sus scrofa OX=9823 GN=SORBS2 PE=1 SV=4 CANONICAL=A0A287A9Z6-1" }, "locus": { "chromosome": "15", "start_pos": 46679083, "end_pos": 46609899, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017201.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017201.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016740.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016740.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZN88", "url": "https://www.uniprot.org/uniprotkb/A0A286ZN88" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "anchoring junction", "id": "GO:0070161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070161", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9Z6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9Z6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9Z6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9Z6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9Z6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9Z6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9Z6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "Notch signaling pathway", "id": "GO:0007219", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007219", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9Z6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6" } ], "pmid": "" }, { "name": "cytoskeleton organization", "id": "GO:0007010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007010", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9Z6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9Z6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-macromolecule adaptor activity", "id": 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"https://www.ncbi.nlm.nih.gov/protein/XP_003357529" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A5J4", "url": "https://www.uniprot.org/uniprotkb/A0A287A5J4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RUNDC3B", "url": "https://www.uniprot.org/uniprotkb/A0A287A5J4", "locus": { "chromosome": "9", "start_pos": 92528662, "end_pos": 92823561, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024485", "url": "https://www.ensembl.org/id/ENSSSCG00000024485" } ] } } ], "crossref": [ { "id": "A0A287A5J4", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A5J4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024485", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024485", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17700", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17700", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522092", "url": "https://www.ncbi.nlm.nih.gov/gene/100522092", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047339", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047339", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522092", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522092", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KQWYDKS", "url": "https://omabrowser.org/oma/group/KQWYDKS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A5J4", "url": "https://www.orthodb.org/?gene=A0A287A5J4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3LAW8", "url": "https://www.orthodb.org/?gene=I3LAW8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46251", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46251", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46251:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46251:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003357529", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357529", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZS57", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZS57-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5J4", "url": "https://www.uniprot.org/uniprotkb/A0A287A5J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5J4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LAW8", "url": "https://www.uniprot.org/uniprotkb/I3LAW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LAW8-1", "url": "https://www.uniprot.org/uniprotkb/I3LAW8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASLSLGGLGGSRGAGGSGKKSLSARNAAVERRNLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAILEQILSHRLKGQVTWFGYESPRSFWDYIRVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGLNAIDFSFCLKGGLDGNFPAVIDYTPYLKFTQSSDSISSDEEELRTLGSSGSESSTPENVGPPFIMDENSWFNKCKRVKQKYQLTLEQKGYLEELLRLRENQLSESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLKSCQSLDQLSAEVSLSQSSLDPGQSQEGDGKQDTLSEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDYLASPTTEMTSPGLTPS", "length": 402, "header": "tr|A0A287A5J4-1|A0A287A5J4_PIG Isoform 1 of RUN domain-containing protein 3B OS=Sus scrofa OX=9823 GN=RUNDC3B PE=3 SV=2 CANONICAL=A0A287A5J4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZS57-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5J4/entry#A0A286ZS57-1", "sequence": { "sequence": "MWGQAGRTCQKGRGGQPATASSSLWGLGRSCGGGASGKKSLSARNAAVERRNLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAILEQILSHRLKGQVTWFGYESPRSFWDYIRVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGLNAIDFSFCLKGGLDGNFPAVIDYTPYLKFTQSSDSISSDEEELRTLGSSGSESSTPENVGPPFIMDENSWFNKCKRVKQKYQLTLEQKGYLEELLRLRENQLSESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLTVLKNNDLRSRQELTTHLTNQWPSPGALDVNAVALDTLLYRKHNKQWYEKSCQSLDQLSAEVSLSQSSLDPGQSQEGDGKQDTLSEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDYLASPTTEMTSPGLTPS", "length": 469, "header": "tr|A0A286ZS57-1|A0A287A5J4_PIG Computationally mapped isoform of RUN domain-containing protein 3B OS=Sus scrofa OX=9823 GN=RUNDC3B PE=3 SV=1 CANONICAL=A0A287A5J4-1" }, "locus": { "chromosome": "9", "start_pos": 92823261, "end_pos": 92531259, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052446.2", "url": "https://www.ensembl.org/id/ENSSSCT00000052446.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034484.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034484.1" } ] } }, { "isoform_ac": "A0A287A5J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5J4/entry#A0A287A5J4-1", "sequence": { "sequence": "MASLSLGGLGGSRGAGGSGKKSLSARNAAVERRNLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAILEQILSHRLKGQVTWFGYESPRSFWDYIRVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGLNAIDFSFCLKGGLDGNFPAVIDYTPYLKFTQSSDSISSDEEELRTLGSSGSESSTPENVGPPFIMDENSWFNKCKRVKQKYQLTLEQKGYLEELLRLRENQLSESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLKSCQSLDQLSAEVSLSQSSLDPGQSQEGDGKQDTLSEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDYLASPTTEMTSPGLTPS", "length": 402, "header": "tr|A0A287A5J4-1|A0A287A5J4_PIG Isoform 1 of RUN domain-containing protein 3B OS=Sus scrofa OX=9823 GN=RUNDC3B PE=3 SV=2 CANONICAL=A0A287A5J4-1" }, "locus": { "chromosome": "9", "start_pos": 92681729, "end_pos": 92531259, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038377.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038377.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039136.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039136.2" } ] } }, { "isoform_ac": "I3LAW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5J4/entry#I3LAW8-1", "sequence": { "sequence": "MASLSLGGLGGSRGAGGSGKKSLSARNAAVERRNLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAILEQILSHRLKEMSQSCRWLAHLQIPLQGQVTWFGYESPRSFWDYIRVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGLNAIDFSFCLKGGLDGNFPAVIDYTPYLKFTQSSDSISSDEEELRTLGSSGSESSTPENVGPPFIMDENSWFNKCKRVKQKYQLTLEQKGYLEELLRLRENQLSESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLTVLKNNDLRSRQELTTHLTNQWPSPGALDVNAVALDTLLYRKHNKQWYEKSCQSLDQLSAEVSLSQSSLDPGQSQEGDGKQDTLSEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDYLASPTTEMTSPGLTPS", "length": 468, "header": "tr|I3LAW8-1|A0A287A5J4_PIG Computationally mapped isoform of RUN domain-containing protein 3B OS=Sus scrofa OX=9823 GN=RUNDC3B PE=3 SV=3 CANONICAL=A0A287A5J4-1" }, "locus": { "chromosome": "9", "start_pos": 92681729, "end_pos": 92531259, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026738.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026738.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021186.3", "url": "https://www.ensembl.org/id/ENSSSCP00000021186.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZS57", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS57" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522092", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522092", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2U409-1", "protein_name": "RUN domain-containing protein 3B", "gene_name": "RUNDC3B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASLGLGGLGASARRKSVPSRNAAVERRNLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAILEQILSHRLKGQITWFGYESTRSFWDYIRVACRKVSHNCICSIENMENVGSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGLNAIDFSFCLKGKGLDGTFPAVIDYTPYLKFIQSSDSISSDEEELRTVGSSGSEGSTPENIVPPVIVDENIWYNKCKRVEQKYRLALEQKGYLEELVRLRENQLSESVSQNKLLLQRIEDMDLAHKMEKEQLEYIIMELQDQLTVLKNNDLRSRQELTTHLTNQWPSPGALDVNAVALDTLLYRKHNQQWDEKSFQSLDQLSADVSLSQTSLDPGHSQDGKQDGINLLNEGKEDTPSLLGLCGSLTSVASYKSLTSLKSSEYLASPTTEMTSPGLTPS", "length": 448 }, "evidence": [ { "id": "A0A287A5J4", "url": "https://omabrowser.org/oma/group/A0A287A5J4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q08E29-1", "protein_name": "RUN domain-containing protein 3B", "gene_name": "RUNDC3B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASRSLGGLGGSRGGGGGVKKSLSARNAAVERRNLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAILEQILSHRLKESSQSCRWLSHLQIPLQGQVTWFGYGSPRSFWDYIRVACRKVSQNCICSIENMEHVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGLNAIDFSFCLKGERLDGNLPAVIDYIPYLRFTQSSDSISSDEEELRTLGSSDSESSTPEKAGPPVIMDENSWFNKCKRVKQKYQLTLEQKGYLEELLQLRENQLSESVAQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLKSYQSLDQLSAEVSLSQTSLDPGQSQEGDGKQDTLNLISEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDYLASPTTEMTSPGLTPS", "length": 423 }, "evidence": [ { "id": "A0A287A5J4", "url": "https://omabrowser.org/oma/group/A0A287A5J4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3B7K9-1", "protein_name": "RUN domain-containing protein 3B", "gene_name": "Rundc3b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASRSLGGLSGSRGGGKKSLSARNAAVERRNLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAVLEQILSHRLKGQVTWFGYESPRSFWDYIRVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEEGAIVLGEEANMLAGMLLGLNAIDFSFCLKGEGLDGTFPAVIDYTPYLKFEQSSDSISSDEEELRTFGSSDSEGSTPENVGPPLILDENSWFNKCKRVRQKYQLTLEQKGYLEELLRLRENQLSESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLKSYQSLDQLSAEVSLSQASLDPGHSQEGDGKQDSLNFIGEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDCLASPTTEITSPGLTPS", "length": 403 }, "evidence": [ { "id": "A0A287A5J4", "url": "https://omabrowser.org/oma/group/A0A287A5J4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6PDC0-1", "protein_name": "RUN domain-containing protein 3B", "gene_name": "Rundc3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASRSLGGLSGSRGGGGGGGGKKSLSARNAAVERRNLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAVLEQILSHRLKGQVTWFGYESPRSFWDYIRVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGLNAIDFSFCLKGEGLDGTFPAVIDYTPYLKFEQSSDSISSDEEELRTFGSSDSESSTPENVGPPLILDENTWFNKCKRVRQKYQLTLEQKGYLEELLRLRENQLSESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLKSYQSLDQLSAEVSLSQASLDPSHSQEGDGKQDSLNFIGEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDCLASPTTELTSPGLTPS", "length": 408 }, "evidence": [ { "id": "A0A287A5J4", "url": "https://omabrowser.org/oma/group/A0A287A5J4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96NL0-1", "protein_name": "RUN domain-containing protein 3B", "gene_name": "RUNDC3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASRSLGGLSGIRGGGGGGGKKSLSARNAAVERRNLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAILEQILSHRLKEISQSCRWLAHLQIPLQGQVTWFGYESPRSFWDYIRVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGLNAIDFSFCLKGEGLDGSFPAVIDYTPYLKYIQSSDSISSDEEELRTLGSSGSESSTPENVGPPFLMDENSWFNKCKRVKQKYQLTLEQKGYLEELLRLRENQLSESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLTVLKNNDLRSRQELTAHLTNQWPSPGALDVNAVALDTLLYRKHNKQWYEKSYQSLDQLSAEVSLSQTSLDPGQSQEGDGKQDTLNVMSEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDYLASPTTEMTSPGLTPS", "length": 473 }, "evidence": [ { "id": "A0A287A5J4", "url": "https://omabrowser.org/oma/group/A0A287A5J4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 116, "end_pos": 118, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A5J4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 402, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A5J4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A5J4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A5J4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A5J4" }, { "id": "PS50826", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50826" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RUN", "eco_id": "ECO_0000259", "start_pos": 56, "end_pos": 188, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 116, "end_pos": 118 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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"6", "start_pos": 47300540, "end_pos": 47298642, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050849.1", "url": "https://www.ensembl.org/id/ENSSSCT00000050849.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039110.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039110.1" } ] } }, { "isoform_ac": "F1RKI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A569/entry#F1RKI8-1", "sequence": { "sequence": "MGNVQSEPSAGGGSRKEQASGRSSDSRRTSLMEPEVTPSSPAMRLARGLGVWFPGSSPPPGLLVPPEPQASPSPLPLTLELPSPVTPPSEEAAAATVSTPPPPPVGTLLPAPSKWRKPTGTSVPRIRGLLEASHRGQGDPPSLRPLPPPPRQLTEEDSNPVPRALSPIPPPSELRKPPLPPPSDRQPLDRKITPALATPAATPTESQARRGSEVQTACGARRGAPPQAGEGEMALPAASEPGLNLLCKVTFKSGPPLPPAAASSSLAAKASLGGGGGGAGLFSATSGAISYAEVLKQGPAPGTARSPGEVPRGTQEAEGGDGDSEGCSGPPSAPVSHVRTLPPPPYTTFPGSKPKFDWVSPPDGPERHFRFNGAGGGVGAPRRRAATLSGPWGSPPPPPGQMHPAPGPRRPAPALLAPPMFIFPAPANGEPVCPGPPDPQEVLPPPLPPPTPPPTPPPAPPPTPQPPMPQPTPLPAALPPTAGPGHLESAVAPAPPPALPLALATEQAQAPAPTPASAQAPAPAPAPITAEPSPPVPAPAKARTRRNKGPRAVRAAPREDGPPGDGLRERTAATVTDSGGGGGGSSRAPPAGTAPSGAARHWPPFQVLNSCPCKCYCRHQPRHRRLPRNVSAWLSTPINHLSEPPWVATIKLAGSLVAGLEHYDLQATHSN", "length": 671, "header": "tr|F1RKI8-1|A0A287A569_PIG Computationally mapped isoform of Gametotin OS=Sus scrofa OX=9823 GN=GGN PE=4 SV=2 CANONICAL=A0A287A569-1" }, "locus": { "chromosome": "6", "start_pos": 47300540, "end_pos": 47297640, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003280.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003280.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003198.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003198.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 198, "start_aa": "Thr", "end_pos": 198, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr198", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 37, "start_aa": "Thr", "end_pos": 37, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr37", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 451, "start_aa": "Thr", "end_pos": 451, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr451", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 455, "start_aa": "Thr", "end_pos": 455, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr455", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 463, "start_aa": "Thr", "end_pos": 463, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr463", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 472, "start_aa": "Thr", "end_pos": 472, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr472", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 514, "start_aa": "Thr", "end_pos": 514, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr514", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 86, "start_aa": "Thr", "end_pos": 86, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr86", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RKI8", "url": "https://www.uniprot.org/uniprotkb/F1RKI8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515664", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515664", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9SRA6-1", "protein_name": "Gametotin", "gene_name": "GGN", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGNVQSEPSAGGGSRKEQASDRSSDSRRTSLVEPEVTPSSPAMRLARGLGVWFPGSSAPPGLLVPPEPQASPSPLPLTLELPSPVTPPSEEAAAAAVSTPPPPPVGTLLPAPSKWRKPMGTPVPRIRGLLEASHRGQGDPPSLRPLPPPSLQLAEEDPDPVPRAPSPTPPPLEPRKPPLPPPSDGQHPDRRITPALATPAATPTESQARLGSEGQTASGARSGAPPQAGEGEMARPAASESGLSLLCKVTFKSGPPLPPAAASSSLATKASLGGGGGGGGLFAASGAISYAEVLKQGPLAPGASRPSGEVPRATQEAEGGDGDGEGCSGPPSASASHARTLPPPPYTTFPGSKPKFDWVSPPDGPERHFRFNGAGGGVGAPRRRAAAFSGPWGSAPPASGQMHPAPGSRRPAPALLAPPMFIFPAPTNGEPVRPRPPGPPELMPPPPPTPPPTPPPAPPPTPQPPVIQTTPLPVTLPPAPGPGHLESAVTPAPAPSLSSALAADQAQVPAPAPAPAPAPAPSPAPAPTVAEPLPPAPAPAKTRTRRNKGPRAARAVPREDGAPRDGPRERTATTVTDSGGAGGGGSGALPAGTANSGAARHWPPFQVLNSCPCKCYCRHQPRHRRLPRNVSAW", "length": 633 }, "evidence": [ { "id": "A0A287A569", "url": "https://omabrowser.org/oma/group/A0A287A569/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q66HC8-1", "protein_name": "Gametogenetin", "gene_name": "Ggn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGNVQSEPSAGGGSRKEQASDRASDSRRTPLVEPEVTPSSPAMRLARGLGVWFPGSSGPPGLLIPPESQASSSTLPLTLELPSPVTPPPEEAAAAAVSTPPPPPVGTLLPAPSKWRKPTGTAVPRIRGLLEASHRGQGDPPSLRPLPPLPRQLTEKDPVLRAPAPPPTPLEPRKQLPPAPSTCDPQPPSRRITLASSATSPTESQVRHSSEGQAAGGAHGEGEMARSATSESGLSLLCKVTFKSGPHLSPTSSSGPLAAKASLGASGGGGLFASSGAISYAEVLKQGPQPPGATRPLGEGPRAAQETEGGDGDGEGCSGPPSVPTPLARALPPPPYTTFPGSKPKFDWVSPPDGTERHFRFNGAVGGIGAPRRRTTTLSGPWGSPPPRSGQTHPSSGPRRPTPALLAPPMFIFPAPNNGEPVRPVPPSPQQIPPLPPPPPTPPATPPPAPPPTPQPPALPRTPILVARPPTPGPGHLESALAPTPPSTLSPTAAAEQAPAPTPAPVTSQVPATTTAELSPPMPQPKIRTRRNKGPRAARGVIREEGTSGDGPREPNMAPVTDSSSGGGGGGSNGTSTAGASNKGTARHWPPFEVLNSCPCKCYCRHQRRHRRLPRNVSAWLSTPTNHLSEPPWVATVKLAGSLVAGLEHYDLQATHST", "length": 658 }, "evidence": [ { "id": "A0A287A569", "url": "https://omabrowser.org/oma/group/A0A287A569/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80WJ1-1", "protein_name": "Gametogenetin", "gene_name": "Ggn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGNVQSEPSAGGGSRKEQASDRASDSRRTPLVEPEVTPSSPAMRLARGLGVWFPGSSGPPGLLIPPEPQASSSPLPLTLELPSPVTPPPEEAAAVSTPPPPPVGTLLPAPSKWRKPTGTSVPRIRGLLEASHRGQGDPPSLRPLPPLPRQLTEKDPVLRAPAPPPTPLEPRKQLPPAPSTCDPQPLSRRITLASSATSPTESQVRHSSEGQAAGGAHGGVPPQAGEGEMARSATSESGLSLLCKVTFKSGPHLSPTSASGPLAAKASPGAGGGGLFASSGAISYAEVLKQGPQPPGATRPLGEVPPGATRPLGEVPRAAQETEGGDGDGEGCSGPPSVPAPLARALPPPPYTTFPGSKPKFDWVSPPDGTERHFRFNGAVGGIGAPRRRTTTLSGPWGSPPPRSGQTHPSSGPRRPTPALLAPPMFIFPAPNNGEPVRPVPPSPQQIPPLPPPPPTPPATPPPAPPPTPQPPALPRTPILVARPPTPGPGHLESALAPTPPSTLSPTAAADQVPAATPATVTSQVPATATAELSPPMPQPKTRTRRNKGPRAARGVIREEGTSGDGPREPNTAPVTDSSSGGGGGGSNGTSTAGASNKGTARHWPPFEVLNSCPCKCYCRHQRRHRRLPRNVSAWLSTPTNHLSEPPWVATVKLAGSLVAGLEHYDLQATHST", "length": 673 }, "evidence": [ { "id": "A0A287A569", "url": "https://omabrowser.org/oma/group/A0A287A569/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86UU5-1", "protein_name": "Gametogenetin", "gene_name": "GGN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGNLQSEPSAGGGSRKVQPSDRAPDSRRTSLVEPEMTSQAMRLTRGLGVWFPGSATPPGLMVPREPQASPSTLPLTLERPSPVMPPPEEAAAVSAPPPAPAGTLLPGPSKWQKPAGTPVPRIRRLLEASHRGQGDPPSLRPLKPPPPPRQLSVKDTVPRAPSQFPPPLETWKPPPPLPSERQPADRRITPALATPASPPTESQAGPRNQGQTAGRARGGAPPHAGEGEMAQPADSESGLSLLCKITFKSRPSLAPPAASSSLAAKASLGGGGGGGLFAASGAISYAEVLKQGPLPPGAARPLGEVSRGAQEAEGGDGDGEGCSGPPSAPASQARALPPPPYTTFPGSKPKFDWVSAPDGPERHFRFNGAGGGIGAPRRRAAALSGPWGSPPPPPEQIHSAPGPRRPAPALLAPPTFIFPAPTNGEPMRPGPPGLQELPPLPPPTPPPTLQPPALQPTPLPVAPPLTPGLGHKESALAPTAAPALPPALAADQAPAPSPAPAPTVAEPSPPVSAPAPAAAPIKTRTRRNKGSRAARGATRKDGLHGDGPRERATATVPDSSGGGGGGSGASQTGAANTRAARHWLPFQVLNSCPCKCYCHHQPRHRRLPRNVSAWLSTSTNHLGEPPWVATIKLSGSLVAKLEHYDLQATHSN", "length": 652 }, "evidence": [ { "id": "A0A287A569", "url": "https://omabrowser.org/oma/group/A0A287A569/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "A0A287A569", "url": "https://www.uniprot.org/uniprotkb/A0A287A569" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "double-strand break repair", "id": "GO:0006302", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006302", "evidence": [ { "database": "UniProtKB", "id": "A0A287A569", "url": "https://www.uniprot.org/uniprotkb/A0A287A569" } ], "pmid": "" }, { "name": "gamete generation", "id": "GO:0007276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007276", "evidence": [ { "database": "UniProtKB", "id": "A0A287A569", "url": "https://www.uniprot.org/uniprotkb/A0A287A569" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 629, "end_pos": 631, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A569-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 633, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A569-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A569" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 37, 86, 198, 451, 455, 463, 472, 514 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 629, "end_pos": 631 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 8 }, { "field": "total_sites", "count": 8 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 8 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 8 }, { "field": "exact_o_linked_sites", "count": 8 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"length": 1229, "header": "tr|A0A287AC96-1|A0A287AC96_PIG Isoform 1 of Sal-like protein 1 OS=Sus scrofa OX=9823 GN=SALL1 PE=3 SV=2 CANONICAL=A0A287AC96-1" }, "locus": { "chromosome": "6", "start_pos": 33747502, "end_pos": 33742656, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045366.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045366.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041515.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041515.2" } ] } }, { "isoform_ac": "A0A8W4FMB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC96/entry#A0A8W4FMB9-1", "sequence": { "sequence": "MSRRKQAKPQHFQSDPEVASLPRRDGTHGHSYVEQHPCTPRSPALRGWPHDISRRQSCQVPRNVPEGFGGQVRKRGSFQFLESVCSSALQRAGHEGQRDLSHSERRRPSRSWQPGQREQLTY", "length": 122, "header": "tr|A0A8W4FMB9-1|A0A287AC96_PIG Computationally mapped isoform of Sal-like protein 1 OS=Sus scrofa OX=9823 GN=SALL1 PE=3 SV=1 CANONICAL=A0A287AC96-1" }, "locus": { "chromosome": "6", "start_pos": 33747354, "end_pos": 33733091, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093486.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093486.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080640.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080640.1" } ] } }, { "isoform_ac": "F1REZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC96/entry#F1REZ7-1", "sequence": { "sequence": "MSRRKQAKPQHFQSDPEVASLPRRDGDAEKGQPNRTTKSKDAHVCGRCCAEFFELSDLLLHKKSCTKNQLVLIVNESPASPPEPFSPSPSPHHPDEQMNDTVNKTEQGDCSDLPEHHGPDREESMEVEAPVANKGGSGPLGGSSDGSGPPSCSSSSSSSSSSSSSSSCTGTSAITTSLPQLGDLTTLGNFSVINSNVIIENLQSTKVAVAQFSQEARCSGASGGKLAVPALMEQLLALQQQQIHQLQLIEQIRHQILLLASQNADLPASSSPSQGTLRTSANPLSTLSSHLSQQLAAAAGLAQSLASQSASISGVKQLPPIQLPQSSSGNTILPSHSGSSPSVNILAAAVTTPASEKAASSAGAAQAGNPAVSAASSPAFAISSLLSPASNPLLPQPAPANSVFPTPLPNIGTTAEDLNSLSALAQQRKSKPPNVTAFDAKSASDEAFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFKCNICGNRFSTKGNLKVHFQRHKEKYPHIQMNPYPVPEHLDNIPTSTGIPYGMSIPPEKPVTSWLDTKPVLPTLTTSVGLPLPPTLPSLPPFIKTEEPAPIPISHSAASPPGSVKSDSGAPEPAPRNPGGLPEEADAPAGPPSSGKSEDSGVGPSSAPAVSTSALGSLAPDGGPGSASTFTNPLLPLMSEQFKAKFPFGGLLDSAQASETSKLQQLVENIDKKATDPNECIICHRVLSCQSALKMHYRTHTGERPFKCKICGRAFTTKGNLKTHYSVHRAMPPLRVQHSCPICQKKFTNAVVLQQHIRMHMGGQIPNTPVPDSYPESMESDTGSFDEKNFDDLDTFSDENMEDCQEGSIPDTPKSADASQDSLSSSPLPLEMSSIAALENQMKMINAGLAEQLQASLKSVENGSVEGDVLTNDSSSVGGDMESQSAGSPAISESTSSMQALSPSNSTQEFHKSPSAEEKPQRAGASDFANGLSPTPVNGGALDLTSSHTEKIIKEDSLGILFPFRDRGKFKNTACDICGKTFACQSALDIHYRSHTKERPFICTVCNRGFSTKGNLKQHMLTHQMRDLPSQLFEPSSNLGPNQNSAVIPANSLASLIKTEVNGFVHVTPQDSKDTPTGHVPSGPLSSSAATSPVLLPALPRRTPKQHYCNTCGKTFSSSSALQIHERTHTGEKPFACTICGRAFTTKGNLKVHMGTHMWNSTPARRGRRLSVDGPMTFLGGNPVKFPEMFQKDLAARSGSGDPSNFWNQYAAALSNGLAMKANEISVIQNGGVPPVPGSLGSGSSSPISGLTGNLEKLQNSEPSAPLAGLEKMASSENGTNFRFTHFVEDSKEIVTS", "length": 1326, "header": "tr|F1REZ7-1|A0A287AC96_PIG Computationally mapped isoform of Sal-like protein 1 OS=Sus scrofa OX=9823 GN=SALL1 PE=3 SV=1 CANONICAL=A0A287AC96-1" }, "locus": { "chromosome": "6", "start_pos": 33747502, "end_pos": 33733091, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003137.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003137.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003056.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003056.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 867, "start_aa": "Thr", "end_pos": 867, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr867", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMB9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMB9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519899", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519899", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 16, "go_terms": [ { "name": "tube development", "id": "GO:0035295", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035295", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC96", "url": "https://www.uniprot.org/uniprotkb/A0A287AC96" } ], "pmid": "" }, { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC96", "url": "https://www.uniprot.org/uniprotkb/A0A287AC96" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC96", "url": "https://www.uniprot.org/uniprotkb/A0A287AC96" } ], "pmid": "" }, { "name": "heart development", "id": "GO:0007507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007507", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC96", "url": "https://www.uniprot.org/uniprotkb/A0A287AC96" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC96", "url": "https://www.uniprot.org/uniprotkb/A0A287AC96" } ], "pmid": "" }, { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC96", "url": "https://www.uniprot.org/uniprotkb/A0A287AC96" } ], "pmid": "" }, { "name": "embryonic digit morphogenesis", "id": "GO:0042733", "url": 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Computationally mapped isoform of F-box protein 2 OS=Sus scrofa OX=9823 GN=FBXO2 PE=1 SV=1 CANONICAL=A0A287ACF2-1" }, "locus": { "chromosome": "6", "start_pos": 71748923, "end_pos": 71740969, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039160.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039160.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040539.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040539.1" } ] } }, { "isoform_ac": "A0A287ACF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2/entry#A0A287ACF2-1", "sequence": { "sequence": "MDGDGDPESVGQPEEASPEEQQEEACTEEAGAEEERPGDEGEEEEAAYLDELPEPLLLRVLAELPAAQLVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGGTEDERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWRVEELPGDSGLEFIHDESVKKYFASSFEWCRKAQVVDLQAEGYWEELLDTTQPAIVVKDWYSGRRDAGCLYELTVKLLSEHEDVLAEFNSGQVVVPQDNDDGWIEISHTFTDYGPGVRFVRFEHGGQDRVYWKGWFGARVTNSSVWVEP", "length": 297, "header": "tr|A0A287ACF2-1|A0A287ACF2_PIG Isoform 1 of F-box protein 2 OS=Sus scrofa OX=9823 GN=FBXO2 PE=1 SV=1 CANONICAL=A0A287ACF2-1" }, "locus": { "chromosome": "6", "start_pos": 71747164, "end_pos": 71740969, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042132.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042132.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041687.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041687.1" } ] } }, { "isoform_ac": "A0A287BEJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2/entry#A0A287BEJ9-1", "sequence": { "sequence": "VAGDSVPESVGQPEEASPEEQQEEACTEEAGAEEERPGDEGEEEEAAYLDELPEPLLLRVLAELPAAQLVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGGTEDERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWRVEELPGDSGLEFIHDESVKKYFASSFEWCRKAQVVDLQAEGYWEELLDTTQPAIVVKDWYSGRRDAGCLYELTVKLLSEHEDVLAEFNSGQVVVPQDNDDGWIEISHTFTDYGPGVRFVRFEHGGQDRVYWKGWFGARVTNSSVWVEP", "length": 297, "header": "tr|A0A287BEJ9-1|A0A287BEJ9_PIG Computationally mapped isoform of F-box protein 2 OS=Sus scrofa OX=9823 GN=FBXO2 PE=1 SV=1 CANONICAL=A0A287ACF2-1" }, "locus": { "chromosome": "6", "start_pos": 71744248, "end_pos": 71740969, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044345.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044345.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054974.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054974.2" } ] } }, { "isoform_ac": "F1RF91-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2/entry#F1RF91-1", "sequence": { "sequence": "DQSAQTTFCGGNDLTGWDWRRQSVGQPEEASPEEQQEEACTEEAGAEEERPGDEGEEEEAAYLDELPEPLLLRVLAELPAAQLVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGGTEDERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWRVEELPGDSGLEFIHDESVKKYFASSFEWCRKAQVVDLQAEGYWEELLDTTQPAIVVKDWYSGRRDAGCLYELTVKLLSEHEDVLAEFNSGQVVVPQDNDDGWIEISHTFTDYGPGVRFVRFEHGGQDRVYWKGWFGARVTNSSVWVEP", "length": 311, "header": "tr|F1RF91-1|A0A287ACF2_PIG Computationally mapped isoform of F-box protein 2 OS=Sus scrofa OX=9823 GN=FBXO2 PE=1 SV=2 CANONICAL=A0A287ACF2-1" }, "locus": { "chromosome": "6", "start_pos": 71748246, "end_pos": 71740969, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029474.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029474.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024912.2", "url": "https://www.ensembl.org/id/ENSSSCP00000024912.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RF91", "url": "https://www.uniprot.org/uniprotkb/F1RF91" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511640", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511640", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AAF5-1", "protein_name": "F-box protein 2", "gene_name": "Fbxo2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDGDGDPESVSHPEEASPEEQPEEAGAEASAEEEQPREEEEEETEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADDERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDSGVEFTHDDSVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYELTVRLLSEHEDVLAEFNTGQVAVPEDGSWMEISHTFTDYGPGVRYVRFEHGGQDSVYWKGWFGARVTNSSVWVEP", "length": 296 }, "evidence": [ { "id": "A0A287ACF2", "url": "https://omabrowser.org/oma/group/A0A287ACF2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q17QK6-1", "protein_name": "F-box only protein 2", "gene_name": "FBXO2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDGDGDPESVGQPEEASPEEQQEEACAEEANGGEERPEDDGEGEAAYLDELPEPLLLRVLAELPAAQLVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPQDGPEDERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDCGVEFIHDESVKKYFASSFEWCRKAQIIDLQAEGYWEELLDTTQPAIVVKDWYSGRRDAGCLYELTVKLLSEHEDVLAEFNSGQVAVPADSDDGGWTEISHTFTDYGPGVRFIRFEHGGQDCVYWKGWFGARVTNSSVWVEP", "length": 297 }, "evidence": [ { "id": "A0A287ACF2", "url": "https://omabrowser.org/oma/group/A0A287ACF2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q80UW2-1", "protein_name": "F-box only protein 2", "gene_name": "Fbxo2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDGDGDPESVSHPEEASPEEQPEEAGAEASAEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWRVEELPGDNGVEFTQDDSVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP", "length": 297 }, "evidence": [ { "id": "A0A287ACF2", "url": "https://omabrowser.org/oma/group/A0A287ACF2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UK22-1", "protein_name": "F-box only protein 2", "gene_name": "FBXO2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDGDGDPESVGQPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWMEISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP", "length": 296 }, "evidence": [ { "id": "A0A287ACF2", "url": "https://omabrowser.org/oma/group/A0A287ACF2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACF2", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACF2", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACF2", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2" } ], "pmid": "" }, { "name": "dendritic spine", "id": "GO:0043197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043197", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACF2", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2" } ], "pmid": "" }, { "name": "SCF ubiquitin ligase complex", "id": "GO:0019005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019005", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACF2", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "denatured protein binding", "id": "GO:0031249", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031249", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACF2", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2" } ], "pmid": "" }, { "name": "amyloid-beta binding", "id": "GO:0001540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001540", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACF2", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACF2", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACF2", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2" } ], "pmid": "" }, { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACF2", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2" } ], "pmid": "" }, { "name": "glycoprotein catabolic process", "id": "GO:0006516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006516", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACF2", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2" } ], "pmid": "" }, { "name": "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0031146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031146", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACF2", "url": "https://www.uniprot.org/uniprotkb/A0A287ACF2" } ], "pmid": "" }, { "name": 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"table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A7M1-1", "uniprot_ac": "A0A287A7M1", "uniprot_id": "A0A287A7M1_PIG", "mass": { "chemical_mass": 56802.0, "monoisotopic_mass": 56802.0 }, "refseq": { "ac": "XP_020939067", "name": "tripartite motif-containing protein 7 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939067" }, "gene_names": [ { "name": "TRIM7", "type": "recommended", "evidence": [ { "id": "A0A287A7M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1" } ] }, { "name": "TRIM7", "type": "synonym", "evidence": [ { "id": "XP_020939067", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939067" } ] } ], "protein_names": [ { 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"name": "TRIM7", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1", "locus": { "chromosome": "2", "start_pos": 57323153, "end_pos": 57310541, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037835", "url": "https://www.ensembl.org/id/ENSSSCG00000037835" } ] } } ], "crossref": [ { "id": "ENSSSCG00000037835", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037835", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13740", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13740", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16594", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16594", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19762", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19762", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100626745", "url": "https://www.ncbi.nlm.nih.gov/gene/100626745", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100626745", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626745", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DMKMHIC", "url": "https://omabrowser.org/oma/group/DMKMHIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A7M1", "url": "https://www.orthodb.org/?gene=A0A287A7M1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13445", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13445", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020939067", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939067", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A7M1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A7M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AD14", "url": "https://www.uniprot.org/uniprotkb/A0A287AD14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AD14-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD14-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVGPRTGPSAGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIARCWERPSAGPTTVSRTLPYSLPCSLPCPQCREPARPGQLRPNRQLAAVATLLRRFSLPAAAPGERGPLEAVSAGCAQHGEPLKLYCQDDGRAICVVCDRAREHRAHAVLPLDEAVQEAKELLESRLKVLKKDLEDYEAFRSTEEKESKELLKQMAAEREKVGAEFQALRAFLVEQEGRLLGRLEELSREVTQKQNENLAQLGEEIAQLSKLSSQIQETTCKPDLDFLQEFKNTLSKCSNVPAPKPTTVSSEMKNKVWNVSLKTFVLKGLLKKFKEDLRGELEKEEKVELTLDPDTANPRLILSLDLKSVRLGQRAQDLPSHPRRFDTNTRVLASCGFSSGRHHWEVEVGSKDGWAFGVARESVRRKGLTPFTPEEGVWALQLNCGQYWAVTSPERTPLSCGHLSRVRVALDLEVGAVSFYAAEDMRHIYTFRVNFQERVFPLFSVCSTGTYLRIWP", "length": 510, "header": "tr|A0A287A7M1-1|A0A287A7M1_PIG Isoform 1 of RING-type E3 ubiquitin transferase OS=Sus scrofa OX=9823 GN=TRIM7 PE=3 SV=1 CANONICAL=A0A287A7M1-1" }, "isoforms": [ { "isoform_ac": "A0A287A7M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1/entry#A0A287A7M1-1", "sequence": { "sequence": "MAAVGPRTGPSAGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIARCWERPSAGPTTVSRTLPYSLPCSLPCPQCREPARPGQLRPNRQLAAVATLLRRFSLPAAAPGERGPLEAVSAGCAQHGEPLKLYCQDDGRAICVVCDRAREHRAHAVLPLDEAVQEAKELLESRLKVLKKDLEDYEAFRSTEEKESKELLKQMAAEREKVGAEFQALRAFLVEQEGRLLGRLEELSREVTQKQNENLAQLGEEIAQLSKLSSQIQETTCKPDLDFLQEFKNTLSKCSNVPAPKPTTVSSEMKNKVWNVSLKTFVLKGLLKKFKEDLRGELEKEEKVELTLDPDTANPRLILSLDLKSVRLGQRAQDLPSHPRRFDTNTRVLASCGFSSGRHHWEVEVGSKDGWAFGVARESVRRKGLTPFTPEEGVWALQLNCGQYWAVTSPERTPLSCGHLSRVRVALDLEVGAVSFYAAEDMRHIYTFRVNFQERVFPLFSVCSTGTYLRIWP", "length": 510, "header": "tr|A0A287A7M1-1|A0A287A7M1_PIG Isoform 1 of RING-type E3 ubiquitin transferase OS=Sus scrofa OX=9823 GN=TRIM7 PE=3 SV=1 CANONICAL=A0A287A7M1-1" }, "locus": { "chromosome": "2", "start_pos": 57321508, "end_pos": 57310900, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041143.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041143.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039943.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039943.1" } ] } }, { "isoform_ac": "A0A287AD14-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1/entry#A0A287AD14-1", "sequence": { "sequence": "MAAVGPRTGPSAGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIARCWERPSAGPTTVSRTLPYSLPCSLPCPQCREPARPGQLRPNRQLAAVATLLRRFSLPAAAPGERGPLEAVSAGCAQHGEPLKLYCQDDGRAICVVCDRAREHRAHAVLPLDEAVQEAKELLESRLKVLKKDLEDYEAFRSTEEKESKELLVSRAPPGWLPSDNKA", "length": 220, "header": "tr|A0A287AD14-1|A0A287A7M1_PIG Computationally mapped isoform of RING-type E3 ubiquitin transferase OS=Sus scrofa OX=9823 GN=TRIM7 PE=3 SV=2 CANONICAL=A0A287A7M1-1" }, "locus": { "chromosome": "2", "start_pos": 57312079, "end_pos": 57310900, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062177.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062177.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041704.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041704.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AD14", "url": "https://www.uniprot.org/uniprotkb/A0A287AD14" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626745", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626745", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XE61-1", "protein_name": "Tripartite motif containing 7.1, MHCB region", "gene_name": "TRIM7.1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSPFGEGLGWETGGGRCWKQDPGSGAGKNSFGTEEESRAGERWVPGIAAMGEGKDCEAERPPLAHALPHCTCGCCDPDSAVLNAKGRAVREDAPILHLCSERKQLLSVCSSMKANGESNSQPVSEVFITSLRKPDTAVGSFLERERPWGRVPSIHALPPAPVKSVLARRREAMAAVFLPGNLQDEATCSVCLEFFKDPVSIECGHNFCRACIVKSWKDLEMDFPCPQCREVFQQKSLRPNRQLANMSEIISQFALRGAKGAEEDGLCVKHREALKLYCKDDRRSICVVCDRSREHRPHAVVPVDEASEEYKEKIQGRLDFLKKERQELLEFKVNDDKKTQELLKTIETERQKLLVEFEGLRQFLHDQEHILLGQLDKMEKSIAKRQNENITDLSKEITLLNKLIAELEEKIQQPVLEFLKDVMSIISRSDEVKCQKPVPVCTDMKMHVCNFSLKTVVLEKVLKRFKEDLTLDPDSANHLLILSADLKSVRMGCRKQELPDNPKRFDTNSRVLATTGFKSGRHYWEVEVGASDGWAFGVAKESVRRKGLTQFSPEEGIWAVQQNGGRYWAVTSPQRTPLCLGQKLSKVRVYLDYEGEEVSFYNAENMQHIFTFNVAFREKVFPLFSVCSTVTYIKLCS", "length": 638 }, "evidence": [ { "id": "A0A287A7M1", "url": "https://omabrowser.org/oma/group/A0A287A7M1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZNJ9-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "Trim7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATVGPRTGPNSGAEALALAAELQGEATCSICLEFFREPVSVECGHSFCRACIMRCWERPGAGTGTVTRTLPCPLPCPQCREPARPSQLRPNRQLAAVASLLRRFSLPPTVPGESGTPAVAAPAAAARCPQHGEQLKLYCQDDGRAICVVCDRAREHRSHAVLPLEEAVQEAKELLDSRMKALKKVLEDYEAFRSTEERESKELLKQMAAEKEKVGAEFQALRAFLVEQEGRLLSRLEVLSREVTQKQNENLAQLEGDITQLSKLSSQIQETAQKPDIEFLQEFKNTLSKCSSVPSSKPTTVSSEMKNKVWNVSLKSFVLKGLLKKFKEDLQGELEKEEKVELSLDPDTANPRLILSLDLKSVRLGQRAQDLPNHPRRFDTNTRVLASCGFSSGRHHWEVEVGSKDGWAFGVARESVRRKGLTPFTPEEGVWAMQLNNGQYWAVTSPERTQLNCGQLSRVRVALDLEVGAVSFYAVEDMRHLYTFRVNFQERVFPLFSVCSTGTYLRIWP", "length": 510 }, "evidence": [ { "id": "A0A287A7M1", "url": "https://omabrowser.org/oma/group/A0A287A7M1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MCG0-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "TRIM7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAVGPRTGPGAGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIARCWERPGTRATAVSHTLSFSLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAGAPGERGPPEAVAAGCAQHGEPLKLYCQDDGRAICVVCDRAREHRAHAVLPLDEAVQEAKELLESRLKVLKKDLEDYEAFRSTEEKESKELLKQMAAEQEKVGAEFQALRAFLVEQEGRLLGRLEELSREVTQKQNENLAQLGDEIAQLSKLSSQIQETTCKPDLDFLQEFKNTLSRCSNVPAPKPTTVSSEMKNKVWNASLKTFVLKGLLKKFKEDLRGELDKEEKVELTLDPDTANPRLILSLDLKSVRLGQQAQDLPSHPRRFDTNTRVLASCGFSSGRHHWEVEVGSKDGWAFGVARESVRRKGLTPFTPEEGVWALQLNNGQYWAVTSPERTPLSCGHLSRVRVALDLEVGAVSFYAAEDMRHIYTFRVNFQERVFPLFSVCSTGTYLRIWP", "length": 506 }, "evidence": [ { "id": "A0A287A7M1", "url": "https://omabrowser.org/oma/group/A0A287A7M1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q923T7-1", "protein_name": "E3 ubiquitin-protein ligase TRIM7", "gene_name": "Trim7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATVGPRTGPNAGAEALALAAELQGEATCSICLEFFREPVSVECGHSFCRACIMRCWERPGAGTGTATRTLPCPLPCPQCREPARPSQLRPNRQLAAVVSLLRRFSLPPTAPGERGTPAVPARAAAARCSQHGEQLKLYCQDDGRAICVVCDRAREHRSHAVLPLEEAVQEAKELLDSRLRALKKVLEDYEAFRSTEERESKELLKQMAAEKEKVGAEFQALRAFLVEQEGRLLSRLEVLSREVTQKQNENLAQLEGEITQLSKLSGQIQETAQKPDLDFLQEFKSTLSKCSSVPSSKPTTVSSEMKNKVWNVSLKSFVLKGLLKKFKEDLQGELEKEEKVELTLDPDTANPRLILSLDLKSVRLGQRAQDLPNHPRRFDTNTRVLASCGFSSGRHHWEVEVGSKDGWAFGVARESVRRKGLTPFTPEEGVWAMQLNNGQYWAVTSPERTQLNCGHLSRVRVALDLEVGAVSFYAVEDMRHLYTFRVNFQERVFPLFSVCSTGTYLRIWP", "length": 510 }, "evidence": [ { "id": "A0A287A7M1", "url": "https://omabrowser.org/oma/group/A0A287A7M1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C029-2", "protein_name": "E3 ubiquitin-protein ligase TRIM7", "gene_name": "TRIM7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFRSTEKKESKELLKQMAAEQEKVGAEFQALRAFLVEQEGRLLGRLEELSREVAQKQNENLAQLGVEITQLSKLSSQIQETAQKPDLDFLQEFKSTLSRCSNVPGPKPTTVSSEMKNKVWNVSLKTFVLKGMLKKFKEDLRGELEKEEKVELTLDPDTANPRLILSLDLKGVRLGERAQDLPNHPCRFDTNTRVLASCGFSSGRHHWEVEVGSKDGWAFGVARESVRRKGLTPFTPEEGVWALQLNGGQYWAVTSPERSPLSCGHLSRVRVALDLEVGAVSFYAVEDMRHLYTFRVNFQERVFPLFSVCSTGTYLRIWP", "length": 511 }, "evidence": [ { "id": "A0A287A7M1", "url": "https://omabrowser.org/oma/group/A0A287A7M1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7M1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7M1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7M1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7M1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7M1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1" } ], "pmid": "" }, { "name": "antiviral innate immune response", "id": "GO:0140374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140374", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7M1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 312, "end_pos": 314, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A7M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 129, "end_pos": 165, "start_aa": "Cys", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287A7M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 323, "end_pos": 510, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287A7M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A7M1" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 85, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 312, "end_pos": 314 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AE26-1", "uniprot_ac": "A0A287AE26", "uniprot_id": "A0A287AE26_PIG", "mass": { "chemical_mass": 76489.0, "monoisotopic_mass": 76489.0 }, "refseq": { "ac": "XP_013852240", "name": "protein-associating with the carboxyl-terminal domain of ezrin isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852240" }, "gene_names": [ { "name": "SCYL3", "type": "recommended", "evidence": [ { "id": "A0A287AE26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26" } ] }, { "name": "SCYL3", "type": "synonym", "evidence": [ { "id": "XP_013852240", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852240" } ] } ], "protein_names": [ { "name": "Protein-associating with the carboxyl-terminal domain of ezrin", "type": "recommended", "evidence": [ { "id": "A0A287AE26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26/entry#names_and_taxonomy" } ] }, { "name": "Ezrin-binding protein PACE-1", "type": "synonym", "evidence": [ { "id": "A0A287AE26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26/entry#names_and_taxonomy" } ] }, { "name": "SCY1-like protein 3", "type": "synonym", "evidence": [ { "id": "A0A287AE26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26/entry#names_and_taxonomy" } ] }, { "name": "protein-associating with the carboxyl-terminal domain of ezrin isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013852240", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852240" } ] } ], "function": [ { "annotation": "May play a role in regulating cell adhesion/migration complexes in migrating cells.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANS0", "url": "https://www.uniprot.org/uniprotkb/A0A287ANS0#function" }, { "database": "UniProtKB", "id": "ARBA00058374", "url": "https://www.uniprot.org/uniprotkb/ARBA00058374#function" }, { "database": "UniProtKB", "id": "A0A287AE26", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AE26", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SCYL3", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26", "locus": { "chromosome": "4", "start_pos": 81175536, "end_pos": 81134352, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006283", "url": "https://www.ensembl.org/id/ENSSSCG00000006283" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006283", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006283", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156397", "url": "https://www.ncbi.nlm.nih.gov/gene/100156397", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021133", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021133", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051177", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051177", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HDPELDW", "url": "https://omabrowser.org/oma/group/HDPELDW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AE26", "url": "https://www.orthodb.org/?gene=A0A287AE26", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12984", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12984", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12984:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12984:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07714", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07714", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013852240", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852240", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AE26", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AE26-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANS0", "url": "https://www.uniprot.org/uniprotkb/A0A287ANS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANS0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSENSALKSYTLKDAPFTLPSGLAVYPAVLQDGKFASVFVYKRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHLTHNNVCLSSVFVSEDGHWKLGGMETVCKVPQATPEFLRSIQSVRDPASIPPEEMSPEFTTLPESHGHARDAYSFGTLVESLLTILSEQVSADVLSSFQQTLHSTLLNPIPTCRPALCTLLSHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKDNARGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSHLEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVVITLHSLAVLVSLLGPEVVVGGERSKIFKRTAPSFTKTMDLSPEGDQFSQPMKFPINGISDVKITLGDSDKFPSSSKKSEEWPDWSEPEETENKTVSIEICPTEPYAAARAPLTNLNAEEERWDDFKPSSLDAEINLEGGITAARPVTSGEQKAIPALLPLTQEAKPSKSSLPPKTSLAQSRDDADQTKTTKVWSQERQLKVPSQLGLGEEFTIQVKKKPVKDPELDWFADMIPEIKPSAAILILPEIRTETVVPNKDNVSSVMHFSSKFAAAEISEEESAGWGEEGDLNWEDNNW", "length": 689, "header": "tr|A0A287AE26-1|A0A287AE26_PIG Isoform 1 of Protein-associating with the carboxyl-terminal domain of ezrin OS=Sus scrofa OX=9823 GN=SCYL3 PE=3 SV=1 CANONICAL=A0A287AE26-1" }, "isoforms": [ { "isoform_ac": "A0A287AE26-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26/entry#A0A287AE26-1", "sequence": { "sequence": "MGSENSALKSYTLKDAPFTLPSGLAVYPAVLQDGKFASVFVYKRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHLTHNNVCLSSVFVSEDGHWKLGGMETVCKVPQATPEFLRSIQSVRDPASIPPEEMSPEFTTLPESHGHARDAYSFGTLVESLLTILSEQVSADVLSSFQQTLHSTLLNPIPTCRPALCTLLSHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKDNARGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSHLEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVVITLHSLAVLVSLLGPEVVVGGERSKIFKRTAPSFTKTMDLSPEGDQFSQPMKFPINGISDVKITLGDSDKFPSSSKKSEEWPDWSEPEETENKTVSIEICPTEPYAAARAPLTNLNAEEERWDDFKPSSLDAEINLEGGITAARPVTSGEQKAIPALLPLTQEAKPSKSSLPPKTSLAQSRDDADQTKTTKVWSQERQLKVPSQLGLGEEFTIQVKKKPVKDPELDWFADMIPEIKPSAAILILPEIRTETVVPNKDNVSSVMHFSSKFAAAEISEEESAGWGEEGDLNWEDNNW", "length": 689, "header": "tr|A0A287AE26-1|A0A287AE26_PIG Isoform 1 of Protein-associating with the carboxyl-terminal domain of ezrin OS=Sus scrofa OX=9823 GN=SCYL3 PE=3 SV=1 CANONICAL=A0A287AE26-1" }, "locus": { "chromosome": "4", "start_pos": 81174888, "end_pos": 81139792, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053636.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053636.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042142.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042142.1" } ] } }, { "isoform_ac": "A0A287ANS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26/entry#A0A287ANS0-1", "sequence": { "sequence": "MGSENSALKSYTLKDAPFTLPSGLAVYPAVLQDGKFASVFVYKRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHLTHNNVCLSSVFVSEDGHWKLGGMETVCKVPQATPEFLRSIQSVRDPASIPPEEMSPEFTTLPESHGHARDAYSFGTLVESLLTILSEQVSADVLSSFQQTLHSTLLNPIPTCRPALCTLLSHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKDNARGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSHLEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVVITLHSLAVLVSLLGPEVVVGGERSKIFKRTAPSFTKTMDLSPEDSPMHVTCSQHSQIAPVLKKPSSGIFPKCLSSGNMPINSKKHTQRGDQFSQPMKFPINGISDVKITLGDSDKFPSSSKKSEEWPDWSEPEETENKTVSIEICPTEPYAAARAPLTNLNAEEERWDDFKPSSLDAEINLEGGITAARPVTSGEQKAIPALLPLTQEAKPSKSSLPPKTSLAQSRDDADQTKTTKVWSQERQLKVPSQLGLGEEFTIQVKKKPVKDPELDWFADMIPEIKPSAAILILPEIRTETVVPNKDNVSSVMHFSSKFAAAEISEEESAGWGEEGDLNWEDNNW", "length": 734, "header": "tr|A0A287ANS0-1|A0A287AE26_PIG Computationally mapped isoform of Protein-associating with the carboxyl-terminal domain of ezrin OS=Sus scrofa OX=9823 GN=SCYL3 PE=3 SV=2 CANONICAL=A0A287AE26-1" }, "locus": { "chromosome": "4", "start_pos": 81174888, "end_pos": 81139792, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038904.2", "url": "https://www.ensembl.org/id/ENSSSCT00000038904.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045547.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045547.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANS0", "url": "https://www.uniprot.org/uniprotkb/A0A287ANS0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LWB9-1", "protein_name": "Protein-associating with the carboxyl-terminal domain of ezrin", "gene_name": "Scyl3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGSENSALKSYTLREPPFTLPSGLAVYPAILQDGKCASVFVYKRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSPAEVCAGIYDVLLALIFLHDRGHLTHNNVCLSSVFVSEDGHWKLGGMETVCKVPQATPEFLRSIQSVRDPASIPPEETSPEFAALPESHGHARDAYSFGTLVDSLLPILKEQVSADVLSSFLQTLHTALLNPTPTCRPALSTLLSHDFFRNDFLEVVNFLRSLTLKSEDEKTEFFKFLLDRVSGLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKENAPGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSHIDAYVKHFTQDQLKKVILPQVLLGLRDTSNSIVAITLRSLAVLVSLLGPEVVVGGERTKIFKRTAPSFTKTSDLSPEGSPMHIVCNQQTQISKGLDNPSSNAFPKWLFSGSMPINSKKHIQEEYYNTLLQTGDQFSHSVKFPMNGISDVKNTSEDKGNFPASSSKPEEWPDWSEPEEPEHQTANLQIRPQAPCDGAESQHTNLNAEEESWDDCESGVGTEVNSVAGASAATPVTSEEQKHTAALLPLTQESKPLKPSPSSKTNHMQRGEVKPPEVSQERPLKVRSELGLGEEFTIQVKKKPVQDPELDWFADMVPEIKPSGTFLILPELRTEVMVPNKDNISPVMQFSSKFAAPEMTEGEAEGWEEELTWEDNNW", "length": 735 }, "evidence": [ { "id": "A0A287AE26", "url": "https://omabrowser.org/oma/group/A0A287AE26/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0YV48-1", "protein_name": "SCY1 like pseudokinase 3", "gene_name": "SCYL3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGSENSALKSYTLEEPPFTLPTGHTIYPAVLQDGRLASVFVYKQENEDMVNKAAKHLKTLRHPCLLRFLSCTVEANGIHLVTERVKPLETVLETLSSAEICAGIYDVLLALTFLHDRGNLTHNNVCLSSVFVSEDGHWKLGGMETVCNFSEATPEFLCHVKSVRDQSCIPCEEMSVDFKILPSSCGHARDAYAFGAMVENLLTALNDQVSADILSSFQQTLHCTLLNPDPKCRPPLSSLLSHEFFRNDFLEVVNFLKTLTLKSEEEKTEFFKFLLDRVAGLSEELIASRLVPLLLNQLVFAEPVAVKSFLPHLLGPKKEQTGESQTNCLLSPALFQTHVIPVLLKLFEVHEEHVRMVLLSHIHAYAELFSREELKNIILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKIFKSSAPSFMKTADFSPEDSPTRTVSNQRHQTSQPLKNNSSVLPISGNAIVKKHSVQQDNPLALNTGEQATQLPLNGVLGSSRSSLTTSEKPAEEWPDWSEPEETENEKTVNIQIQPQKPQGSMGPYFVERDVDEKPWDDFEPSSPHTDLTSGNCLTVTQADAAEMQRTLPGTHQQSKELESLKVSPSTKSSPGNSWNNDKWDHRGQLGKTVLPKQTLEERLKSSLESGLGEEFTIKVKRKPVQDPELDWFADMTPDIKPSSAVLILPEARTEAVVPSHSGAVSSREGASQNALFSSKFAAVDVIEAEAGGWGEEEELNWEDDANW", "length": 746 }, "evidence": [ { "id": "A0A287AE26", "url": "https://omabrowser.org/oma/group/A0A287AE26/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAF6DMC6-1", "protein_name": "Protein-associating with the carboxyl-terminal domain of ezrin", "gene_name": "SCYL3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSENSALKSYALKEPPFTLPSGLAVYPAVLQDGKLASVFVYKRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVVLETLSSAEVCAGIYDILLALIFLHDRGHLTHNNVCVSSVFVSEDGHWKLGGMETVCKVAQATPEFLKSIRSVRDPASIPPEEMSPEFTTLPASHGHARDAYSFGTLVESLLTVLSEQVAADILSSFQHTLRSALLSPSPHCRPALCSLLCHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKDNTHGEAPRLLSPALFQARVIPVLLRLFEVHEEHVRVVLLSHLEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKIFKRTAPSFTKTVDLSPEDSPVHVTCSQRSQSLPILKNAPPGIFPKCFSGNMPINSKKHIPQDYYSTFLQTDDQFSQPIKFPINGISEVKITSGDSENFPSSSKKAEEWPDWSEPEEPENKTVNAEVCPADPHAAAQSPLTNLNAEEEPWDDFEPGSLDTEVNLEGGMMPTRPVTSGEQKATPALPSKSSLPPKTSLAQSRDDPDQTKPPKVLSQERRLKVPSELGLGEEFTIQVKKKPVKDPELDWFADMIPEIKPSAAILILPELRTETVVPSKDNVSSVMHFSSKFAAAEITEGESSGWGEDGDLNWDDNSW", "length": 734 }, "evidence": [ { "id": "A0A287AE26", "url": "https://omabrowser.org/oma/group/A0A287AE26/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZK09-1", "protein_name": "SCY1 like pseudokinase 3", "gene_name": "Scyl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGSENSALKSYTLGEPPYTLPSGLAVYPAVLQDGKCASVFVYKRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSPAEVCAGIYDILLALVFLHERGHLTHNNVCLSSVFVSEDGHWKLGGMETVCKVSQATPEFLRSIQSVRDPASIPPEEMSPDFAALPESHGHARDAYAFGALVDSLLPIFNEQVSADVLSSFLQTLHSALLSPTPTCRPALSTLLSHDFFRNDFLEVVNFLKSLTLKSEDEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKENAPGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLRSLAVLVSLLGPEVVVGGQRSKIFKRTAPSFTKTSDLSPEGSPMHVVCSQQSRISKVLENPSSNVFPKWFSGNMSINSRKHIQEEYYSTLLQTDVKNTSEDNGSFPAGSNKPEEWPDWSEPEEPEHQTTSIHIWPQEPGDVAETQHTSLSAQELSWDDCESSFGPEVNTAARASAPRPVTSGEQMPTAALLPLTEESKPVQSRPSSKTSHRQQEEVKAPQMSQERPPQVRSELGLGEEFTIQVKKKPAQDPELDWFADMVPEIKPSGTFLILPELRTEGMVPDKDTVSPVMQFSSKFAATEMTEGEAEGWEGEELAWEDDNW", "length": 719 }, "evidence": [ { "id": "A0A287AE26", "url": "https://omabrowser.org/oma/group/A0A287AE26/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8IZE3-1", "protein_name": "Protein-associating with the carboxyl-terminal domain of ezrin", "gene_name": "SCYL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSENSALKSYTLREPPFTLPSGLAVYPAVLQDGKFASVFVYKRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHLTHNNVCLSSVFVSEDGHWKLGGMETVCKVSQATPEFLRSIQSIRDPASIPPEEMSPEFTTLPECHGHARDAFSFGTLVESLLTILNEQVSADVLSSFQQTLHSTLLNPIPKCRPALCTLLSHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKIFKRTAPSFTKNTDLSLEDSPMCVVCSHHSQISPILENPFSSIFPKCFFSGSTPINSKKHIQRDYYNTLLQTGDPFSQPIKFPINGLSDVKNTSEDSENFPSSSKKSEEWPDWSEPEEPENQTVNIQIWPREPCDDVKSQCTTLDVEESSWDDCEPSSLDTKVNPGGGITATKPVTSGEQKPIPALLSLTEESMPWKSSLPQKISLVQRGDDADQIEPPKVSSQERPLKVPSELGLGEEFTIQVKKKPVKDPEMDWFADMIPEIKPSAAFLILPELRTEMVPKKDDVSPVMQFSSKFAAAEITEGEAEGWEEEGELNWEDNNW", "length": 742 }, "evidence": [ { "id": "A0A287AE26", "url": "https://omabrowser.org/oma/group/A0A287AE26/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DBQ7-1", "protein_name": "Protein-associating with the carboxyl-terminal domain of ezrin", "gene_name": "Scyl3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSENSALKSYTLRESPFTLPSGLAVYPAILQDGKCASVFVYKRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSPAEVCAGIYDILLALIFLHDRGHLTHNNVCLSSVFVSEDGHWKLGGMETVCQVPQATPEFLRNIQSVRDPASIPPEEMSPEFSGLPESHGHARDAYAFGALVDSLLPIFNEQVSADVLSSFLQILHSALLNPMPECRPALSTLLSHDFFRNDFLEVVNFLKSLTLKSEDEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKENAPGETPCLLSPALFQSRVIPVLLRLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSNSIVAITLRSLAVLVSLLGPEVVVGGERTKIFKRTAPSFTKTSDLSPEGSPMHVVCSQQSRVSKVLEDPSSNVFPKWLSGNVPSSSRKRIQEECYSSLSQTGDQFSHTIKFPMNGLSDVKNTSEDNGSFPAGSNKPEEWPDWSEPEEPEQQPASIHRWPREPCDVAESQHTNLTAEEVTWDDGEASFGTEINSTATASAPVPVTSGGQSTSAALVPLTEESKPLQSSPSSKTSHRQHEEVKPPQVSQERPLKAPSGLGLGEEFTIQVKKKPVQDPELDWFADMIPEIKPSGTFLILPELRTEVMVPDKDNVSSLMQFSSKFAATEMTEGEAEGWEGEELAWEDNNW", "length": 735 }, "evidence": [ { "id": "A0A287AE26", "url": "https://omabrowser.org/oma/group/A0A287AE26/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein kinase activity", "id": "GO:0004672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004672", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE26", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE26", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE26", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE26", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE26", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26" } ], "pmid": "" }, { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE26", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE26", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" }, { "start_pos": 652, "end_pos": 654, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AE26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AE26" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 245, "start_aa": "Met", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 486, "end_pos": 488 }, { "start_pos": 652, "end_pos": 654 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A6V6-1", "uniprot_ac": "A0A287A6V6", "uniprot_id": "A0A287A6V6_PIG", "mass": { "chemical_mass": 17136.0, "monoisotopic_mass": 17136.0 }, "refseq": { "ac": "XP_020934255", "name": "single-stranded DNA-binding protein, mitochondrial isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934255" }, "gene_names": [ { "name": "SSBP1", "type": "recommended", "evidence": [ { "id": "A0A287A6V6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A6V6" } ] }, { "name": "SSBP1", "type": "synonym", "evidence": [ { "id": "XP_020934255", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934255" } ] } ], "protein_names": [ { "name": "Single-stranded DNA-binding protein", "type": "recommended", "evidence": [ { "id": "A0A287A6V6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A6V6/entry#names_and_taxonomy" } ] }, { "name": "single-stranded DNA-binding protein, mitochondrial isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020934255", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934255" } ] } ], "function": [ { "annotation": "Binds preferentially and cooperatively to pyrimidine rich single-stranded DNA (ss-DNA). In vitro, required to maintain the copy number of mitochondrial DNA (mtDNA) and plays a crucial role during mtDNA replication by stimulating the activity of the replisome components POLG and TWNK at the replication fork. Promotes the activity of the gamma complex polymerase POLG, largely by organizing the template DNA and eliminating secondary structures to favor ss-DNA conformations that facilitate POLG activity. In addition it is able to promote the 5'-3' unwinding activity of the mtDNA helicase TWNK. May also function in mtDNA repair.", "evidence": [ { "database": "UniProtKB", "id": "F1SRQ7", "url": "https://www.uniprot.org/uniprotkb/F1SRQ7#function" }, { "database": "UniProtKB", "id": "ARBA00045894", "url": "https://www.uniprot.org/uniprotkb/ARBA00045894#function" }, { "database": "UniProtKB", "id": "A0A287ALS6", "url": "https://www.uniprot.org/uniprotkb/A0A287ALS6#function" }, { "database": "UniProtKB", "id": "A0A287A6V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6V6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A6V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6V6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SSBP1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6V6", "locus": { "chromosome": "18", "start_pos": 8151029, "end_pos": 8167983, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016488", "url": "https://www.ensembl.org/id/ENSSSCG00000016488" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016488", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016488", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04496", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04496", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512994", "url": "https://www.ncbi.nlm.nih.gov/gene/100512994", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000424", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000424", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011344", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011344", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512994", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512994", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IKSRQWQ", "url": "https://omabrowser.org/oma/group/IKSRQWQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10302", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10302", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10302:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10302:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00436", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00436", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9837999", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9913635", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9913635", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020934255", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934255", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A6V6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6V6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALS6", "url": "https://www.uniprot.org/uniprotkb/A0A287ALS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALS6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRQ7", "url": "https://www.uniprot.org/uniprotkb/F1SRQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRQ7-1", "url": "https://www.uniprot.org/uniprotkb/F1SRQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFRRPVFQVLHQFVRHESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGENEAYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRVYVEGKVDYGEYTDKNNVRRQATTIIADNIIFLSDQVKEKA", "length": 148, "header": "tr|A0A287A6V6-1|A0A287A6V6_PIG Isoform 1 of Single-stranded DNA-binding protein OS=Sus scrofa OX=9823 GN=SSBP1 PE=1 SV=1 CANONICAL=A0A287A6V6-1" }, "isoforms": [ { "isoform_ac": "A0A287A6V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6V6/entry#A0A287A6V6-1", "sequence": { "sequence": "MFRRPVFQVLHQFVRHESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGENEAYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRVYVEGKVDYGEYTDKNNVRRQATTIIADNIIFLSDQVKEKA", "length": 148, "header": "tr|A0A287A6V6-1|A0A287A6V6_PIG Isoform 1 of Single-stranded DNA-binding protein OS=Sus scrofa OX=9823 GN=SSBP1 PE=1 SV=1 CANONICAL=A0A287A6V6-1" }, "locus": { 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00147", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00147", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2129379", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2129379", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020923614", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923614", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AB52", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AB52-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZP0", "url": "https://www.uniprot.org/uniprotkb/A0A287AZP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZP0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKALLALPLLLLISADRCAPQVLGIRGDALDKFCPQQPLDCDDIYAQGYQIDGVYLIYPSGPSLPVPVFCDMTTEGGKWTVFQKRFNGSVSFFRGWNDYKLGFGRADGEYWLGLQNLHLLTLKHKYELRVDLEDFENNTAFAKYHDFSISPNAVSAEEDGYTLYVADFEDGGAGDSLTYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRSCHFANLNGFYLGGSHLSYANGINWAQWKGFYYSLRRTEMKIRRA", "length": 255, "header": "tr|A0A287AB52-1|A0A287AB52_PIG Isoform 1 of Microfibril-associated glycoprotein 4 OS=Sus scrofa OX=9823 GN=MFAP4 PE=4 SV=3 CANONICAL=A0A287AB52-1" }, "isoforms": [ { "isoform_ac": "A0A287AB52-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52/entry#A0A287AB52-1", "sequence": { "sequence": "MKALLALPLLLLISADRCAPQVLGIRGDALDKFCPQQPLDCDDIYAQGYQIDGVYLIYPSGPSLPVPVFCDMTTEGGKWTVFQKRFNGSVSFFRGWNDYKLGFGRADGEYWLGLQNLHLLTLKHKYELRVDLEDFENNTAFAKYHDFSISPNAVSAEEDGYTLYVADFEDGGAGDSLTYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRSCHFANLNGFYLGGSHLSYANGINWAQWKGFYYSLRRTEMKIRRA", "length": 255, "header": "tr|A0A287AB52-1|A0A287AB52_PIG Isoform 1 of Microfibril-associated glycoprotein 4 OS=Sus scrofa OX=9823 GN=MFAP4 PE=4 SV=3 CANONICAL=A0A287AB52-1" }, "locus": { "chromosome": "12", "start_pos": 60143316, "end_pos": 60141606, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041663.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041663.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041010.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041010.3" } ] } }, { "isoform_ac": "A0A287AZP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52/entry#A0A287AZP0-1", "sequence": { "sequence": "ADGVLGRGAGVTPFSCRQALLALPLLLLISADRCAPQVLGIRGDALDKFCPQQPLDCDDIYAQGYQIDGVYLIYPSGPSLPVPVFCDMTTEGGKWTVFQKRFNGSVSFFRGWNDYKLGFGRADGEYWLGLQNLHLLTLKHKYELRVDLEDFENNTAFAKYHDFSISPNAVSAEEDGYTLYVADFEDGGAGDSLTYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRSCHFANLNGFYLGGSHLSYANGINWAQWKGFYYSLRRTEMKIRRA", "length": 271, "header": "tr|A0A287AZP0-1|A0A287AB52_PIG Computationally mapped isoform of Microfibril-associated glycoprotein 4 OS=Sus scrofa OX=9823 GN=MFAP4 PE=4 SV=2 CANONICAL=A0A287AB52-1" }, "locus": { "chromosome": "12", "start_pos": 60143316, "end_pos": 60141722, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053482.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053482.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049633.3", "url": "https://www.ensembl.org/id/ENSSSCP00000049633.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZP0", "url": "https://www.uniprot.org/uniprotkb/A0A287AZP0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110256120", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256120", "resource": "KEGG Pathway" }, { "id": "R-SSC-2129379", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2129379", "resource": "Reactome", "description": "Molecules associated with elastic fibres" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XA04-1", "protein_name": "Fibrinogen C-terminal domain-containing protein", "gene_name": "LOC112531347", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWGTSWTAAPVGGSGRRGSLYGVPMGSPWDSIGALWGCMGLYGVSMRVYGALLWLYEALWGTHVARCVPMGFYWGSTGLYGALWGSVGYLWGSMGLYGGPMWLDVYLWGSIGDLWGSMGSLWGSIRSLWGSMGYLWGSMGSLWGCMGLYGVPMGLYGISMGVCGALSGLYGALWVSIGSLWGSMVSLWGSMGVYGALWGSYGGLWGLYGALWGSVGYLWGSVGYTLHVGHFVDGGAGGGLRKKGGSLWGDSLSYHHGQKFSTFDRDQDLYVQNCAALSSGAWWFKSCHFSNLNGFYLGGAHLSYANGLNWAQWKGFNYSLRRSEMKIRRL", "length": 330 }, "evidence": [ { "id": "A0A287AB52", "url": "https://omabrowser.org/oma/group/A0A287AB52/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3V6A9-1", "protein_name": "Microfibril-associated glycoprotein 4", "gene_name": "Mfap4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSLNLEVMGLGRLVALQLRTALPSAGIAGMLCLYPCLCAACAGGPQRPESASDLLGLELEVPGTCQTLSGLPLLLLLLSTPPPCAPQASGIRGDALEKSCLQQPLDCDDIYMQGYQEDGVYLIYPYGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFFRGWNDYKLGFGRADGEYWLGLQNLHLLTLKQKYELRVDLEDFENNTAYAKYVDFSISPNAVSAEEDGYTLYVAGFEDGGAGDSLSYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRSCHFANLNGFYLGGSHLSYANGINWAQWKGFYYSLKRTEMKIRRA", "length": 323 }, "evidence": [ { "id": "A0A287AB52", "url": "https://omabrowser.org/oma/group/A0A287AB52/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P55083-1", "protein_name": "Microfibril-associated glycoprotein 4", "gene_name": "MFAP4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKALLALPLLLLLSTPPCAPQVSGIRGDALERFCLQQPLDCDDIYAQGYQSDGVYLIYPSGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFFRGWNDYKLGFGRADGEYWLGLQNMHLLTLKQKYELRVDLEDFENNTAYAKYADFSISPNAVSAEEDGYTLFVAGFEDGGAGDSLSYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRSCHFANLNGFYLGGSHLSYANGINWAQWKGFYYSLKRTEMKIRRA", "length": 255 }, "evidence": [ { "id": "A0A287AB52", "url": "https://omabrowser.org/oma/group/A0A287AB52/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P55918-1", "protein_name": "Microfibril-associated glycoprotein 4", "gene_name": "MFAP4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEALLVLPLLLLLSAGPCAPQLLGIRGDALEKSCLQLPLDCDDIYAQGYQADGVYLIYPSGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFFRGWNDYKLGFGRADGEYWLGLQNMHLLTLKQKYELRVDLEDFENNTAFAKYADFSISPNAVSAEEDGYTLYVSGFEDGGAGDSLTYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRSCHFANLNGFYLGGSHLSYANGINWAQWKGFYYSLKRTEMKIRRA", "length": 255 }, "evidence": [ { "id": "A0A287AB52", "url": "https://omabrowser.org/oma/group/A0A287AB52/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9D1H9-1", "protein_name": "Microfibril-associated glycoprotein 4", "gene_name": "Mfap4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKALPALPLMLMLLSMPPPCAPQASGIRGDALEKSCLQQPLDCDDIYAQGYQEDGVYLIYPYGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFFRGWSDYKLGFGRADGEYWLGLQNLHLLTLKQKYELRVDLEDFENNTAYAKYIDFSISPNAISAEEDGYTLYVAGFEDGGAGDSLSYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRSCHFANLNGFYLGGSHLSYANGINWAQWKGFYYSLKRTEMKIRRA", "length": 257 }, "evidence": [ { "id": "A0A287AB52", "url": "https://omabrowser.org/oma/group/A0A287AB52/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "R4GEQ7-1", "protein_name": "Microfibril-associated glycoprotein 4 isoform X1", "gene_name": "mfap4.8", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAMTVFVVALLSVFTASVVSGFKPFDCSEIYKSGQTVSGIYSIYPAGDTPVWVYCQMVSDGKVEENEGWTVFQRRMDGSIHFFQLWEKYRIGFGTTEGEYWLGLENLYQLTRHKKFMLRVDLEDFTGRRGFAQYSSFSVGSEVEGYKLELSGFTDGGAGDSLSYHNGMKFSTYDRDQDTNEDNCARMRLGAFWYKGCNYANPNGVYLWGEDKSKNGIAINWYTWKNDNETPMKFITMKIKPVS", "length": 243 }, "evidence": [ { "id": "A0A287AB52", "url": "https://omabrowser.org/oma/group/A0A287AB52/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "cellular response to UV-B", "id": "GO:0071493", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071493", "evidence": [ { "database": "UniProtKB", "id": "A0A287AB52", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52" } ], "pmid": "" }, { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A287AB52", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52" } ], "pmid": "" }, { "name": "elastic fiber assembly", "id": "GO:0048251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048251", "evidence": [ { "database": "UniProtKB", "id": "A0A287AB52", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52" } ], "pmid": "" }, { "name": "UV protection", "id": "GO:0009650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009650", "evidence": [ { "database": "UniProtKB", "id": "A0A287AB52", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52" } ], "pmid": "" }, { "name": "regulation of collagen metabolic process", "id": "GO:0010712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010712", "evidence": [ { "database": "UniProtKB", "id": "A0A287AB52", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A287AB52", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52" } ], "pmid": "" }, { "name": "microfibril", "id": "GO:0001527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001527", "evidence": [ { "database": "UniProtKB", "id": "A0A287AB52", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52" } ], "pmid": "" }, { "name": "elastic fiber", "id": "GO:0071953", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071953", "evidence": [ { "database": "UniProtKB", "id": "A0A287AB52", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A287AB52", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "A0A287AB52", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AB52-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 255, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AB52-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AB52" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AB52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AB52" }, { "id": "PS51406", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51406" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibrinogen C-terminal", "eco_id": "ECO_0000259", "start_pos": 32, "end_pos": 255, "start_aa": "Lys", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AF56-1", "uniprot_ac": "A0A287AF56", "uniprot_id": "A0A287AF56_PIG", "mass": { "chemical_mass": 30032.0, "monoisotopic_mass": 30032.0 }, "refseq": {}, "gene_names": [ { "name": "NUDT13", "type": "recommended", "evidence": [ { "id": "A0A287AF56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56" } ] } ], "protein_names": [ { "name": "Nudix hydrolase 13", "type": "synonym", "evidence": [ { "id": "A0A287AF56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "NAD(P)H pyrophosphatase that hydrolyzes NADH into NMNH and AMP, and NADPH into NMNH and 2',5'-ADP. Has a marked preference for the reduced pyridine nucleotides. Does not show activity toward NAD-capped RNAs; the NAD-cap is an atypical cap present at the 5'-end of some RNAs.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B7K3", "url": "https://www.uniprot.org/uniprotkb/A0A287B7K3#function" }, { "database": "UniProtKB", "id": "ARBA00059095", "url": "https://www.uniprot.org/uniprotkb/ARBA00059095#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AF56", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NUDT13", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56", "locus": { "chromosome": "14", "start_pos": 75958178, "end_pos": 75918171, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025492", "url": "https://www.ensembl.org/id/ENSSSCG00000025492" } ] } } ], "crossref": [ { "id": "A0A287AF56", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AF56", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025492", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025492", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03429", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03429", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "106504089", "url": "https://www.ncbi.nlm.nih.gov/gene/106504089", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000086", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000086", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015375", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015375", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015376", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015376", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020084", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020084", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PGQTEIH", "url": "https://omabrowser.org/oma/group/PGQTEIH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287B7K3", "url": "https://www.orthodb.org/?gene=A0A287B7K3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11383", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11383", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11383:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11383:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00293", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00293", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09296", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09296", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09297", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09297", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-499943", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-499943", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "11800", "url": "https://www.rhea-db.org/rhea/11800", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "48868", "url": "https://www.rhea-db.org/rhea/48868", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "60820", "url": "https://www.rhea-db.org/rhea/60820", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZLC3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLC3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AF56", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AF56-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B7K3", "url": "https://www.uniprot.org/uniprotkb/A0A287B7K3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B7K3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B7K3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RGL6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RGL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLFCGTACRRKSFLCYRLLSTFVTKTRYLFELKEDDDACKKAQQTGAFYLFHSLAPLLQKSEHQYLAPKHSLLELERLLGKLGQDTQRIEDSVLIGCSEQQEAWFALDLGLNSSSSINASLQKSEMEKELKGSFIELRKALFQLNVKDASLLSTAQALLHWHGAHQFCSRSGQPTKKNMAGSKRMCPSNEIIYYPQIQVNLRELEAAAWFSYDEVATALRRNKRYTQQQSEAFAFWLPPKLAIAHQLIKEWVEKPTCSTLPV", "length": 263, "header": "tr|A0A287AF56-1|A0A287AF56_PIG Isoform 1 of Nudix hydrolase 13 OS=Sus scrofa OX=9823 GN=NUDT13 PE=4 SV=2 CANONICAL=A0A287AF56-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56/entry#A0A286ZLC3-1", "sequence": { "sequence": "MSLFCGTACRRKSFLCYRLLSTFVTKTRYLFELKEDDDACKKAQQTGAFYLFHSLAPLLQKSEHQYLAPKHSLLELERLLGKLGQDTQRIEDSVLIGCSEQQEAWFALDLGLNSSSSINASLQKSEMEKELKGSFIELRKALFQLNVKDASLLSTAQALLHWHGAHQFCSRSGQPTKKNMAGSKRMCPSNEIIYYPQMAPVVITLVSDGTRCLLARQSSFPKGMYSALAGFCDIDPGELERIRSSSLVQL", "length": 250, "header": "tr|A0A286ZLC3-1|A0A287AF56_PIG Computationally mapped isoform of Nudix hydrolase 13 OS=Sus scrofa OX=9823 GN=NUDT13 PE=4 SV=1 CANONICAL=A0A287AF56-1" }, "locus": { "chromosome": "14", "start_pos": 75956077, "end_pos": 75945451, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059660.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059660.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032265.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032265.1" } ] } }, { "isoform_ac": "A0A287AF56-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56/entry#A0A287AF56-1", "sequence": { "sequence": "MSLFCGTACRRKSFLCYRLLSTFVTKTRYLFELKEDDDACKKAQQTGAFYLFHSLAPLLQKSEHQYLAPKHSLLELERLLGKLGQDTQRIEDSVLIGCSEQQEAWFALDLGLNSSSSINASLQKSEMEKELKGSFIELRKALFQLNVKDASLLSTAQALLHWHGAHQFCSRSGQPTKKNMAGSKRMCPSNEIIYYPQIQVNLRELEAAAWFSYDEVATALRRNKRYTQQQSEAFAFWLPPKLAIAHQLIKEWVEKPTCSTLPV", "length": 263, "header": "tr|A0A287AF56-1|A0A287AF56_PIG Isoform 1 of Nudix hydrolase 13 OS=Sus scrofa OX=9823 GN=NUDT13 PE=4 SV=2 CANONICAL=A0A287AF56-1" }, "locus": { "chromosome": "14", "start_pos": 75956228, "end_pos": 75945451, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058693.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058693.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042514.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042514.2" } ] } }, { "isoform_ac": "A0A287B7K3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56/entry#A0A287B7K3-1", "sequence": { "sequence": "MSLFCGTACRRKSFLCYRLLSTFVTKTRYLFELKEDDDACKKAQQTGAFYLFHSLAPLLQKSEHQYLAPKHSLLELERLLGKLGQDTQRIEDSVLIGCSEQQEAWFALDLGLNSSSSINASLQKSEMEKELKGSFIELRKALFQLNVKDASLLSTAQALLHWHGAHQFCSRSGQPTKKNMAGSKRMCPSNEIIYYPQMAPVVITLVSDGTRCLLARQSSFPKGMYSALAGFCDIGESVEEAVRREVAEEVGLEVERLKYTASQHWPFPNSSLMIACHATVKPGQTEIQVNLRELEAAAWFSYDEVATALRRNKRYTQQQSEAFAFWLPPKLAIAHQLIKEWVEKPTCSTLPV", "length": 352, "header": "tr|A0A287B7K3-1|A0A287AF56_PIG Computationally mapped isoform of Nudix hydrolase 13 OS=Sus scrofa OX=9823 GN=NUDT13 PE=4 SV=1 CANONICAL=A0A287AF56-1" }, "locus": { "chromosome": "14", "start_pos": 75956228, "end_pos": 75945451, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040066.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040066.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052057.1", "url": "https://www.ensembl.org/id/ENSSSCP00000052057.1" } ] } }, { "isoform_ac": "A0A5G2RGL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56/entry#A0A5G2RGL6-1", "sequence": { "sequence": "MSLFCGTACRRKSFLCYRLLSTFVTKTRYLFELKEDDDACKKAQQTGAFYLFHSLAPLLQKSEHQYLAPKHSLLELERLLGKLGQDTQRIEDSVLIGCSEQQEAWFALDLGLNSSSSINASLQKSEMEKELKGSFIELRKALFQLNVKDASLLSTAQALLHWHGAHQFCSRSGQPTKKNMAGSKRMCPSNEIIYYPQVKVWKRLSGEKLQKRWDWRWKDSTLLPSTGPFLIALS", "length": 234, "header": "tr|A0A5G2RGL6-1|A0A287AF56_PIG Computationally mapped isoform of Nudix hydrolase 13 OS=Sus scrofa OX=9823 GN=NUDT13 PE=4 SV=1 CANONICAL=A0A287AF56-1" }, "locus": { "chromosome": "14", "start_pos": 75954465, "end_pos": 75945451, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079180.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079180.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074158.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074158.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RGL6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGL6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-499943", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-499943", "resource": "Reactome", "description": "Interconversion of nucleotide di- and triphosphates" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MGS1-1", "protein_name": "NAD(P)H pyrophosphatase NUDT13, mitochondrial", "gene_name": "Nudt13", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSLYCGTICRRKSFWCYRLLSTYVTKARYLFELKEDDEACRKALQTGVFYLFHDLAPLLQASGHRYLVPRLSRAELEGLLGKFGQDSQRIEDSVLIGCSNQQEAWFALDLGLNSAASKHVSLPKSEMEAELGGSFIKLRQALFQLNSMDSSLLFTAQALLRWHDGHQFCSKSGQPTKKNMAGSKRVCPSSNIIYYPQMAPVVITLVTDGARCLLARQSSFPKGLYSALAGFCDIGESVEEAVRREVAEEVGLEVESLQYSSSQHWPFPNSSLMIACHATVKAGQTEIQVNQKELEAAAWFSLDEVATALLRKGSFLQQQSDALPLLLPPKLAIAHHMIKKWVERQTCASLAA", "length": 352 }, "evidence": [ { "id": "A0A287AF56", "url": "https://omabrowser.org/oma/group/A0A287AF56/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0ZBU5-1", "protein_name": "NAD(+) diphosphatase", "gene_name": "NUDT13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPAFCRFCRDSFPLVLIMAAIYQAAYRRAALFCRSHSTYVKKMRYLNKLKEDDSLCRQAQTSGTFYLFHNLSPFLRKVEEKYLIPQLSAAEMKRILEKFKETEQWIEKSVLIGCSDEHVPHFALDLGALERSVIEAELKGSFTDLRKALFVVDEDSSSLLASAQALLRWHDSHQYCSKTGQPTQKNVAGSKRVCHASGITYYPQMSPVVIILVSDGSRCLLARQPSFPQGMYTALSGFCDIGEAVEETARREVAEEVGLEVESLWYSASQHWPFPSSCLMIACHALVRGQQLEISMNSLELEEARWFGLEEVMEGLKREPKSAKQDNGNFLPWFPPKQAIAHQLINEWVKQQTS", "length": 354 }, "evidence": [ { "id": "A0A287AF56", "url": "https://omabrowser.org/oma/group/A0A287AF56/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "M0R515-1", "protein_name": "NAD(P)H pyrophosphatase NUDT13, mitochondrial", "gene_name": "Nudt13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLYCGTFFRRKSFGCYRLLSTYVTKARYLFELKEDDEACRKAQQTGLFYLFHDLDPLLQESGHRYLVPRLSRAELEGLLGKFGQDSQRIEDSVLVGCSNEQEAWFALDLGLKSASSVRASLPKSEMEAELGGSFVKLRQALLQLNSVDSSLLFTAQALLRWHDGHQFCSKSGQPTQKNMAGSKRVCPSNNIIYYPQMAPVVITLVSDGARCLLARQSSFPRGLYSALAGFCDIGERVEEAVHREVAEEVGLEVENIQYSASQHWPFPNSSLMIACHATVKPGHTEIQVNLKELEAAAWFSLDEVATALRRKGSFAQQQREASPLMLPPKLAVAHHMIKEWVEKQSRSSLAA", "length": 352 }, "evidence": [ { "id": "A0A287AF56", "url": "https://omabrowser.org/oma/group/A0A287AF56/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86X67-1", "protein_name": "NAD(P)H pyrophosphatase NUDT13, mitochondrial", "gene_name": "NUDT13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLYCGIACRRKFFWCYRLLSTYVTKTRYLFELKEDDDACKKAQQTGAFYLFHSLAPLLQTSAHQYLAPRHSLLELERLLGKFGQDAQRIEDSVLIGCSEQQEAWFALDLGLDSSFSISASLHKPEMETELKGSFIELRKALFQLNARDASLLSTAQALLRWHDAHQFCSRSGQPTKKNVAGSKRVCPSNNIIYYPQMAPVAITLVSDGTRCLLARQSSFPKGMYSALAGFCDIGESVEETIRREVAEEVGLEVESLQYYASQHWPFPSGSLMIACHATVKPGQTEIQVNLRELETAAWFSHDEVATALKRKGPYTQQQNGTFPFWLPPKLAISHQLIKEWVEKQTCSSLPA", "length": 352 }, "evidence": [ { "id": "A0A287AF56", "url": "https://omabrowser.org/oma/group/A0A287AF56/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8JZU0-1", "protein_name": "NAD(P)H pyrophosphatase NUDT13, mitochondrial", "gene_name": "Nudt13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLYCRTFFRRKSFGCYRLLSTYVTKARYLFELKEDEEACRKAQKTGVFYLFHDLDPLLQASGHRYLVPRLSRAELEGLLGKFGQDSQRIEDSVLVGCSEQQEAWFALDLGLKSASSSRASLPKSEMEAELGGSFIKLRQALFQLNSVDSSLLFTAQALLRWHDGHQFCSKSGQPTQKNVAGSKRVCPSSKIIYYPQMAPVVITLVSDGARCLLARQSSFPKGLYSALAGFCDIGESVEETVHREVAEEVGLEVENIQYSASQHWPFPNSSLMIACHATVKPGHTEIQVNLKELEAAAWFSLDEVTTALRRKGSLALQPSEASPLLLPPKLAIAHHLIKKWVETRSCSSLAA", "length": 352 }, "evidence": [ { "id": "A0A287AF56", "url": "https://omabrowser.org/oma/group/A0A287AF56/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF56", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF56", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56" } ], "pmid": "" }, { "name": "pyrophosphatase activity", "id": "GO:0016462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016462", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF56", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF56", "url": "https://www.uniprot.org/uniprotkb/A0A287AF56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "11800", "name": "", "equation": "NAD(+) + H2O = beta-nicotinamide D-ribonucleotide + AMP + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "11800", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/11800" } ] }, { "id": "48868", "name": "", "equation": "NADH + H2O = reduced beta-nicotinamide D-ribonucleotide + AMP + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "48868", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/48868" } ] }, { "id": "60820", "name": "", "equation": "NADPH + H2O = reduced beta-nicotinamide D-ribonucleotide + adenosine 2',5'-bisphosphate + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "60820", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/60820" } ] }, { "id": "R-SSC-6810472", "name": "NUDT13 hydrolyses AP6A to AP4 and ADP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [ "R-ALL-6810468" ], "output_participant_list": [ "R-ALL-6810471" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6810472", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6810472" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-6810468", "participant_name": "AP6A [mitochondrial matrix]", "crossref": [ { "id": "63740", "database": "ChEBI", "url": "" }, { "id": "ZINC000256824195", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-6810471", "participant_name": "AP4 [mitochondrial matrix]", "crossref": [ { "id": "ZINC000008551576", "database": "ZINC", "url": "" }, { "id": "58450", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AF56-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 263, "overlap": "1.0", 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"length": 1004, "header": "tr|A0A480VBY0-1|A0A287ACC2_PIG Computationally mapped isoform of OFD1 centriole and centriolar satellite protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A287ACC2-1" }, "locus": { "chromosome": "X", "start_pos": 10415403, "end_pos": 10366531, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013264.6", "url": "https://www.ensembl.org/id/ENSSSCT00000013264.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012908.6", "url": "https://www.ensembl.org/id/ENSSSCP00000012908.6" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum 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Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BMF9", "url": "https://www.uniprot.org/uniprotkb/A0A287BMF9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512518", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512518", "resource": "KEGG Pathway" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-8854214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "resource": "Reactome", "description": "TBC/RABGAPs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7FTC7-1", "protein_name": "Carabin isoform X1", "gene_name": "Tbc1d10c", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": 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"MAQALGEDLLSELQDDSSSLGSDSELSGPSPYRQADRYGFIGGNSGELRLCQPSADLIRQREMKWVEMTLHWEKTMSRRYKKVKIQCRKGIPSALRARCWPLLCGARMCQKNNPGTYQELAAAPGDPQWMETIGRDLHRQFPLHEMFVSPQGHGQQGLLQVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVQLDAEVFMALLRRQLPRVYKHLQQVGVGPLLYLPEWFLCLFTRSLPFPTVLRIWDAFLSEGAKVLFRVGLTLMRLALGTVEQRTACPGLLETLGALRAIPPTQLQEEVFMSQVHSVTLSERVLQQEIRIQLAQLSKSLPGPAPLPQARLPGAQAIFESQQLAGVRESTKPEIPRIVVQPPEEPKPPRRKPQTRGKTFHGLLIRARGPPIEGPSRSQRGSASFLDTRF", "length": 444 }, "evidence": [ { "id": "A0A287A724", "url": "https://omabrowser.org/oma/group/A0A287A724/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IV04-1", "protein_name": "Carabin", "gene_name": "TBC1D10C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQALGEDLVQPPELQDDSSSLGSDSELSGPGPYRQADRYGFIGGSSAEPGPGHPPADLIRQREMKWVEMTSHWEKTMSRRYKKVKMQCRKGIPSALRARCWPLLCGAHVCQKNSPGTYQELAEAPGDPQWMETIGRDLHRQFPLHEMFVSPQGHGQQGLLQVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVRLDAEVFMALLRRLLPHVHKHLQQVGVGPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGARVLFRVGLTLVRLALGTAEQRGACPGLLETLGALRAIPPAQLQEEAFMSQVHSVVLSERDLQREIKAQLAQLPDSAPGPPPRPQVRLAGAQAIFEAQQLAGVRRGAKPEVPRIVVQPPEEPRPPRRKPQTRGKTFHGLLTRARGPPIEGPPRPQRGSTSFLDTRF", "length": 446 }, "evidence": [ { "id": "A0A287A724", "url": "https://omabrowser.org/oma/group/A0A287A724/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A287A724", "url": "https://www.uniprot.org/uniprotkb/A0A287A724" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287A724", "url": "https://www.uniprot.org/uniprotkb/A0A287A724" } ], "pmid": "" }, { "name": "filopodium membrane", "id": "GO:0031527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031527", "evidence": [ { "database": "UniProtKB", "id": "A0A287A724", "url": "https://www.uniprot.org/uniprotkb/A0A287A724" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrograde transport, endosome to Golgi", "id": "GO:0042147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042147", "evidence": [ { "database": "UniProtKB", "id": "A0A287A724", "url": "https://www.uniprot.org/uniprotkb/A0A287A724" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A724-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 440, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A724-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A724" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A724", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A724" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 280, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ABM3-1", "uniprot_ac": "A0A287ABM3", "uniprot_id": "A0A287ABM3_PIG", "mass": { "chemical_mass": 108207.0, "monoisotopic_mass": 108207.0 }, "refseq": {}, "gene_names": [ { "name": "TMEM67", "type": "recommended", "evidence": [ { "id": "A0A287ABM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ] } ], "protein_names": [ { "name": "Transmembrane protein 67", "type": "synonym", "evidence": [ { "id": "A0A287ABM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM67", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3", "locus": { "chromosome": "4", "start_pos": 42879140, "end_pos": 42931121, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006108", "url": "https://www.ensembl.org/id/ENSSSCG00000006108" } ] } } ], "crossref": [ { "id": "A0A287ABM3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ABM3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006108", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006108", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515024", "url": "https://www.ncbi.nlm.nih.gov/gene/100515024", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019170", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019170", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515024", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515024", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YITENKG", "url": "https://omabrowser.org/oma/group/YITENKG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RY42", "url": "https://www.orthodb.org/?gene=F1RY42", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21274", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21274", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21274:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21274:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09773", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09773", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5620912", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZL30", "url": "https://www.uniprot.org/uniprotkb/A0A286ZL30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZL30-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZL30-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6K8", "url": "https://www.uniprot.org/uniprotkb/A0A287A6K8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6K8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A287BKQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD66", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD66-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD66-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FM38", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FM38-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM38-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RY42", "url": "https://www.uniprot.org/uniprotkb/F1RY42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RY42-1", "url": "https://www.uniprot.org/uniprotkb/F1RY42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVTGSCGPGVAMAARSVRSVATVTVFLLLVVPRVSQTQTFFFPFQQPETCGHNQYFDISALSCVPCGANQMQDAGGTSCVCLPGFQMISNNGGPDIICKKCPESMKGVTEDGWNCISCPDGLTAEGKCHCPTGHILVERDVNGTLLSQATCKLCDDSENSFTVANALGTRCVRCEPTFINTSRSCACSEPNILTGELCFSSTGNFPPHMISTARYGELGKSFTSEWFAKYLQSSAAACWVYANLTSCQALGNMCVMNMNSYHFATFDACQLFQFIFENTAGLHTVHSISFWRQNLPWLFFGDQLGLAPQVLSTIPLPTNFSFKGENQNTKLKFVAASYDVRGNFLKWQTLEGGVLQLCPDTETRLNAAYSFGTTYQQNCEIPISKILTDFPTPTFYDVYIEYTDENQHQYIWAVPVLNLNLQHNKIFVNQDSNSGKWLLTRRIFLVDALSGRENDLGSQPRLIRVATQISLSIHLVPNTKNGNIYPPLITIAYSDIDVSDPNSQSVKVSFSVEYEMDQKEAHIQTDIALGVLGGLAVLSSLLKTAGWKRRIGSPMIDLQAQMSVSVLLPTPAQEKRFVTYVGCAFALKALQFLHKLFSQITIDIFFIDWERPKGKILKAVEGEGGVRSATVPVSIWRTYFVANEWNEIQTVRKINPLFQVLTVLFLLEVVGFKNLALMDSSSSLSRSPPSYIAPYSRILRYAVSTVLWLVIGIIQIMFFAVFYERFIEDKIRQFVDLCCMSNISVFLLSHKCFGYYIHGRSVHGHADTNMEEMNMNLKREAENLCSQRGLVPNTDGQTFQIAISSQMRQHYDRIHETLTRRNGPARLLSSSASTFEQSIKAYHTMNKFLGSFIDHVHKEMDYFIKDKLLLERILGMEFMEPMEKSIFYNDEGYSFSSVLYYGNEATLLIYDLLFFCVVDLACQNFILAAFLTYLQQEIFRFIRNTVGQKNLASKTLVDQRFLI", "length": 963, "header": "tr|A0A287ABM3-1|A0A287ABM3_PIG Isoform 1 of Transmembrane protein 67 OS=Sus scrofa OX=9823 GN=TMEM67 PE=4 SV=2 CANONICAL=A0A287ABM3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZL30-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3/entry#A0A286ZL30-1", "sequence": { "sequence": "MVTGSCGPGVAMAARSVRSVATVTVFLLLVVPRVSQTQTFFFPFQQPETCGHNQYFDISALSCVPCGANQMQDAGGTSCVCLPGFQMISNNGGPDIICKKCPESMKGVTEDGWNCISCPDGLTAEGKCHCPTGHILVERDVNGTLLSQATCKLCDDSENSFTVANALGTRCVRCEPTFINTSRSCACSEPNILTGELCFSSTGNFPPHMISTARYGELGKSFTSEWFAKYLQSSAAACWVYANLTSCQALGNMCVMNMNSYHFATFDACQLFQFIFENTAGLHTVHSISFWRQNLPWLFFGDQLGLAPQVLSTIPLPTNFSFKGENQNTKLKFVAASYDVRGNFLKWQTLEGGVLQLCPDTETRLNAAYSFGTTYQQNCEIPISKILTDFPTPTFYDVYIEYTDENQHQYIWAVPVLNLNLQHNKIFVNQDSNSGKWLLTRRIFLVDALSGRENDLGSQPRLIRVATQISLSIHLVPNTKNGNIYPPLITIAYSDIDVSDPNSQSVKVSFSVEYEMDQKEAHIQTDIALGVLGGLAVLSSLLKTAGWKRRIGSPMIDLQTVMKFLFYYAGDLANVFFTITLGTGLYWLIFFKAQMSVSVLLPTPAQEKRFVTYVGCAFALKALQFLHKLFSQITIDIFFIDWERPKGKILKAVEGEGGVRSATVPVSIWRTYFVANEWNEIQTVRKINPLFQVLTVLFLLEVVGFKNLALMDSSSSLSRSPPSYIAPYSRILRYAVSTVLWLVIGIIQIMFFAVFYERFIEDKIRQFVDLCCMSNENLCSQRGLVPNTDGQTFQIAISSQMRQHYDRIHETLTRRNGPARLLSSSASTFEQSIKAYHTMNKFLGSFIDHVHKEMDYFIKDKLLLERILGMEFMEPMEKSIFYNDEGYSFSSVLYYGNEATLLIYDLLFFCVVDLACQNFILAAFLTYLQQEIFRFIRNTVGQKNLASKTLVDQRFLI", "length": 957, "header": "tr|A0A286ZL30-1|A0A287ABM3_PIG Computationally mapped isoform of Transmembrane protein 67 OS=Sus scrofa OX=9823 GN=TMEM67 PE=4 SV=3 CANONICAL=A0A287ABM3-1" }, "locus": { "chromosome": "4", "start_pos": 42931059, "end_pos": 42879403, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049613.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049613.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032312.3", "url": "https://www.ensembl.org/id/ENSSSCP00000032312.3" } ] } }, { "isoform_ac": "A0A287A6K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3/entry#A0A287A6K8-1", "sequence": { "sequence": "MVTGSCGPGVAMAARSVRSVATVTVFLLLVVPRVSQTQTFFFPFQQPETCGHNQYFDISALSCVPCGANQMQDAGGTSCVCLPGFQMISNNGGPDIICKKCPESMGKSFTSEWFAKYLQSSAAACWVYANLTSCQALGNMCVMNMNSYHFATFDACQLFQFIFENTAGLHTVHSISFWRQNLPWLFFGDQLGLAPQVLSTIPLPTNFSFKGENQNTKLKFVAASYDVRGNFLKWQTLEGGVLQLCPDTETRLNAAYSFGTTYQQNCEIPISKILTDFPTPTFYDVYIEYTDENQHQYIWAVPVLNLNLQHNKIFVNQDSNSGKWLLTRRIFLVDALSGRENDLGSQPRLIRVATQISLSIHLVPNTKNGNIYPPLITIAYSDIDVSDPNSQSVKVSFSVEYEMDQKEAHIQTDIALGVLGGLAVLSSLLKTAGWKRRIGSPMIDLQTVMKFLFYYAGDLANVFFTITLGTGLYWLIFFKAQMSVSVLLPTPAQEKRFVTYVGCAFALKALQFLHKLFSQITIDIFFIDWERPKGKILKAVEGEGGVRSATVPVSIWRTYFVANEWNEIQTVRKINPLFQVLTVLFLLEVVGFKNLALMDSSSSLSRSPPSYIAPYSRILRYAVSTVLWLVIGIIQIMFFAVFYERFIEDKIRQFVDLCCMSNISVFLLSHKCFGYYIHGRSVHGHADTNMEEMNMNLKREAENLCSQRGLVPNTDGQTFQIAISSQMRQHYDRIHETLTRRNGPARLLSSSASTFEQSIKAYHTMNKFLGSFIDHVHKEMDYFIKDKLLLERILGMEFMEPMEKSIFYNDEGYSFSSVLYYGNEATLLIYDLLFFCVVDLACQNFILAAFLTYLQQEIFRFIRNTVGQKNLASKTLVDQRFLI", "length": 883, "header": "tr|A0A287A6K8-1|A0A287A6K8_PIG Computationally mapped isoform of Transmembrane protein 67 OS=Sus scrofa OX=9823 GN=TMEM67 PE=4 SV=3 CANONICAL=A0A287ABM3-1" }, "locus": { "chromosome": "4", "start_pos": 42931059, "end_pos": 42879403, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039970.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039970.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039442.3", "url": "https://www.ensembl.org/id/ENSSSCP00000039442.3" } ] } }, { "isoform_ac": "A0A287ABM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3/entry#A0A287ABM3-1", "sequence": { "sequence": "MVTGSCGPGVAMAARSVRSVATVTVFLLLVVPRVSQTQTFFFPFQQPETCGHNQYFDISALSCVPCGANQMQDAGGTSCVCLPGFQMISNNGGPDIICKKCPESMKGVTEDGWNCISCPDGLTAEGKCHCPTGHILVERDVNGTLLSQATCKLCDDSENSFTVANALGTRCVRCEPTFINTSRSCACSEPNILTGELCFSSTGNFPPHMISTARYGELGKSFTSEWFAKYLQSSAAACWVYANLTSCQALGNMCVMNMNSYHFATFDACQLFQFIFENTAGLHTVHSISFWRQNLPWLFFGDQLGLAPQVLSTIPLPTNFSFKGENQNTKLKFVAASYDVRGNFLKWQTLEGGVLQLCPDTETRLNAAYSFGTTYQQNCEIPISKILTDFPTPTFYDVYIEYTDENQHQYIWAVPVLNLNLQHNKIFVNQDSNSGKWLLTRRIFLVDALSGRENDLGSQPRLIRVATQISLSIHLVPNTKNGNIYPPLITIAYSDIDVSDPNSQSVKVSFSVEYEMDQKEAHIQTDIALGVLGGLAVLSSLLKTAGWKRRIGSPMIDLQAQMSVSVLLPTPAQEKRFVTYVGCAFALKALQFLHKLFSQITIDIFFIDWERPKGKILKAVEGEGGVRSATVPVSIWRTYFVANEWNEIQTVRKINPLFQVLTVLFLLEVVGFKNLALMDSSSSLSRSPPSYIAPYSRILRYAVSTVLWLVIGIIQIMFFAVFYERFIEDKIRQFVDLCCMSNISVFLLSHKCFGYYIHGRSVHGHADTNMEEMNMNLKREAENLCSQRGLVPNTDGQTFQIAISSQMRQHYDRIHETLTRRNGPARLLSSSASTFEQSIKAYHTMNKFLGSFIDHVHKEMDYFIKDKLLLERILGMEFMEPMEKSIFYNDEGYSFSSVLYYGNEATLLIYDLLFFCVVDLACQNFILAAFLTYLQQEIFRFIRNTVGQKNLASKTLVDQRFLI", "length": 963, "header": "tr|A0A287ABM3-1|A0A287ABM3_PIG Isoform 1 of Transmembrane protein 67 OS=Sus scrofa OX=9823 GN=TMEM67 PE=4 SV=2 CANONICAL=A0A287ABM3-1" }, "locus": { "chromosome": "4", "start_pos": 42931059, "end_pos": 42879403, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039168.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039168.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041409.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041409.2" } ] } }, { "isoform_ac": "A0A287BKQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3/entry#A0A287BKQ5-1", "sequence": { "sequence": "MRGPLASHHGDGQLWSWGGNGRQQPETCGHNQYFDISALSCVPCGANQMQDAGGTSCVCLPGFQMISNNGGPDIICKKCPESMKGVTEDGWNCISCPDGLTAEGKCHCPTGHILVERDVNGTLLSQATCKLCDDSENSFTVANALGTRCVRCEPTFINTSRSCACSEPNILTGELCFSSTGNFPPHMISTARYGELGKSFTSEWFAKYLQSSAAACWVYANLTSCQALGNMCVMNMNSYHFATFDACQLFQFIFENTAGLHTVHSISFWRQNLPWLFFGDQLGLAPQVLSTIPLPTNFSFKGENQNTKLKFVAASYDVRGNFLKWQTLEGGVLQLCPDTETRLNAAYSFGTTYQQNCEIPISKILTDFPTPTFYDVYIEYTDENQHQYIWAVPVLNLNLQHNKIFVNQDSNSGKWLLTRRIFLVDALSGRENDLGSQPRLIRVATQISLSIHLVPNTKNGNIYPPLITIAYSDIDVSDPNSQSVKVSFSVEYEMDQKEAHIQTDIALGVLGGLAVLSSLLKTAGWKRRIGSPMIDLQTVMKFLFYYAGDLANVFFTITLGTGLYWLIFFKAQMSVSVLLPTPAQEKRFVTYVGCAFALKALQFLHKLFSQITIDIFFIDWERPKGKILKAVEGEGGVRSATVPVSIWRTYFVANEWNEIQTVRKINPLFQVLTVLFLLEVVGFKNLALMDSSSSLSRSPPSYIAPYSRILRYAVSTVLWLVIGIIQIMFFAVFYERFIEDKIRQFVDLCCMSNISVFLLSHKCFGYYIHGRSVHGHADTNMEEMNMNLKREAENLCSQRGLVPNTDGQTFQIAISSQMRQHYDRIHETLTRRNGPARLLSSSASTFEQSIKAYHTMNKFLGSFIDHVHKEMDYFIKDKLLLERILGMEFMEPMEKSIFYNDEGYSFSSVLYYGNEATLLIYDLLFFCVVDLACQNFILAAFLTYLQQEIFRFIRNTVGQKNLASKTLVDQRFLI", "length": 974, "header": "tr|A0A287BKQ5-1|A0A287BKQ5_PIG Computationally mapped isoform of Transmembrane protein 67 OS=Sus scrofa OX=9823 GN=TMEM67 PE=4 SV=2 CANONICAL=A0A287ABM3-1" }, "locus": { "chromosome": "4", "start_pos": 42931084, "end_pos": 42879403, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050941.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050941.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056749.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056749.3" } ] } }, { "isoform_ac": "A0A8W4FD66-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3/entry#A0A8W4FD66-1", "sequence": { "sequence": "MRGPLASHHGDGQLWSWGGNGRQQPETCGHNQYFDISALSCVPCGANQMQDAGGTSCVCLPGFQMISNNGGPDIICKKCPESMKGVTEDGWNCISCPDGLTAEGKCHCPTGHILVERDVNGTLLSQATCKLCDDSENSFTVANALGTRCVRCEPTFINTSRSCACSEPNILTGELCFSSTGNFPPHMISTARYGELGKSFTSEWFAKYLQSSAAACWVYANLTSCQALGNMCVMNMNSYHFATFDACQLFQFIFENTAGLHTVHSISFWRQNLPWLFFGDQLGLAPQVLSTIPLPTNFSFKGENQNTKLKFVAASYDVRGNFLKWQTLEGGVLQLCPDTETRLNAAYSFGTTYQQNCEIPISKILTDFPTPTFYDVYIEYTDENQHQYIWAVPVLNLNLQHNKIFVNQDSNSGKWLLTRRIFLVDALSGRENDLGSQPRLIRVATQISLSIHLVPNTKNGNIYPPLITIAYSDIDVSDPNSQSVKVSFSVEYEMDQKEAHIQTDIALGVLGGLAVLSSLLKTAGWKRRIGSPMIDLQTVMKFLFYYAGDLANVFFTITLGTGLYWLIFFKAQMSVSVLLPTPAQEKRFVTYVGCAFALKALQFLHKLFSQITIDIFFIDWERPKGKILKAVEGEGGVRSATVPVSIWRTYFVANEWNEIQTVRKINPLFQVLTVLFLLEVVGFKNLALMDSSSSLSRSPPSYIAPYSRILRYAVSTVLWLVIGIIQIMFFAVFYERFIEDKIRQFVDLCCMSNISVFLLSHKCFGYYIHGRSVHGHADTNMEEMNMNLKREAENLCSQRGLVPNTDGQTFQIAISSQMRQHYDRIHETLTRVHKEMDYFIKDKLLLERILGMEFMEPMEKSIFYNDEGYSFSSVLYYGNEATLLIYDLLFFCVVDLACQNFILAAFLTYLQQEIFRFIRNTVGQKNLASKTLVDQRFLI", "length": 939, "header": "tr|A0A8W4FD66-1|A0A287ABM3_PIG Computationally mapped isoform of Transmembrane protein 67 OS=Sus scrofa OX=9823 GN=TMEM67 PE=4 SV=1 CANONICAL=A0A287ABM3-1" }, "locus": { "chromosome": "4", "start_pos": 42931084, "end_pos": 42879403, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096052.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096052.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077210.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077210.1" } ] } }, { "isoform_ac": "A0A8W4FM38-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3/entry#A0A8W4FM38-1", "sequence": { "sequence": "MVTGSCGPGVAMAARSVRSVATVTVFLLLVVPRVSQTQTFFFPFQQPETCGHNQYFDISALSCVPCGANQMQDAGGTSCVCLPGFQMISNNGGPDIICKKCPESMKGVTEDGWNCISCPDGLTAEGKCHCPTGHILDSNSGKWLLTRRIFLVDALSGRENDLGSQPRLIRVATQISLSIHLVPNTKNGNIYPPLITIAYSDIDVSDPNSQSVKVSFSVEYEMDQKEAHIQTDIALGVLGGLAVLSSLLKTAGWKRRIGSPMIDLQTVMKFLFYYAGDLANVFFTITLGTGLYWLIFFKAQMSVSVLLPTPAQEKRFVTYVGCAFALKALQFLHKLFSQITIDIFFIDWERPKGKILKAVEGEGGVRSATVPVSIWRTYFVANEWNEIQTVRKINPLFQVLTVLFLLEVVGFKNLALMDSSSSLSRSPPSYIAPYSRILRYAVSTVLWLVIGIIQIMFFAVFYERFIEDKIRQFVDLCCMSNISVFLLSHKCFGYYIHGRSVHGHADTNMEEMNMNLKREAENLCSQRGLVPNTDGQTFQIAISSQMRQHYDRIHETLTRRNGPARLLSSSASTFEQSIKAYHTMNKFLGSFIDHVHKEMDYFIKDKLLLERILGMEFMEPMEKSIFYNDEGYSFSSVLYYGNEATLLIYDLLFFCVVDLACQNFILAAFLTYLQQEIFRFIRNTVGQKNLASKTLVDQRFLI", "length": 702, "header": "tr|A0A8W4FM38-1|A0A287ABM3_PIG Computationally mapped isoform of Transmembrane protein 67 OS=Sus scrofa OX=9823 GN=TMEM67 PE=4 SV=1 CANONICAL=A0A287ABM3-1" }, "locus": { "chromosome": "4", "start_pos": 42931059, "end_pos": 42879403, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092710.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092710.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079364.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079364.1" } ] } }, { "isoform_ac": "F1RY42-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3/entry#F1RY42-1", "sequence": { "sequence": "MVTGSCGPGVAMAARSVRSVATVTVFLLLVVPRVSQTQTFFFPFQQPETCGHNQYFDISALSCVPCGANQMQDAGGTSCVCLPGFQMISNNGGPDIICKKCPESMKGVTEDGWNCISCPDGLTAEGKCHCPTGHILVERDVNGTLLSQATCKLCDDSENSFTVANALGTRCVRCEPTFINTSRSCACSEPNILTGELCFSSTGNFPPHMISTARYGELGKSFTSEWFAKYLQSSAAACWVYANLTSCQALGNMCVMNMNSYHFATFDACQLFQFIFENTAGLHTVHSISFWRQNLPWLFFGDQLGLAPQVLSTIPLPTNFSFKGENQNTKLKFVAASYDVRGNFLKWQTLEGGVLQLCPDTETRLNAAYSFGTTYQQNCEIPISKILTDFPTPTFYDVYIEYTDENQHQYIWAVPVLNLNLQHNKIFVNQDSNSGKWLLTRRIFLVDALSGRENDLGSQPRLIRVATQISLSIHLVPNTKNGNIYPPLITIAYSDIDVSDPNSQSVKVSFSVEYEMDQKEAHIQTDIALGVLGGLAVLSSLLKTAGWKRRIGSPMIDLQTVMKFLFYYAGDLANVFFTITLGTGLYWLIFFKAQMSVSVLLPTPAQEKRFVTYVGCAFALKALQFLHKLFSQITIDIFFIDWERPKGKILKAVEGEGGVRSATVPVSIWRTYFVANEWNEIQTVRKINPLFQVLTVLFLLEVVGFKNLALMDSSSSLSRSPPSYIAPYSRILRYAVSTVLWLVIGIIQIMFFAVFYERFIEDKIRQFVDLCCMSNISVFLLSHKCFGYYIHGRSVHGHADTNMEEMNMNLKREAENLCSQRGLVPNTDGQTFQIAISSQMRQHYDRIHETLTRRNGPARLLSSSASTFEQSIKAYHTMNKFLGSFIDHVHKEMDYFIKDKLLLERILGMEFMEPMEKSIFYNDEGYSFSSVLYYGNEATLLIYDLLFFCVVDLACQNFILAAFLTYLQQEIFRFIRNTVGQKNLASKTLVDQRFLI", "length": 996, "header": "tr|F1RY42-1|A0A287ABM3_PIG Computationally mapped isoform of Transmembrane protein 67 OS=Sus scrofa OX=9823 GN=TMEM67 PE=4 SV=5 CANONICAL=A0A287ABM3-1" }, "locus": { "chromosome": "4", "start_pos": 42931059, "end_pos": 42879403, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006700.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006700.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006520.5", "url": "https://www.ensembl.org/id/ENSSSCP00000006520.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 570, "start_aa": "Thr", "end_pos": 570, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr570", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FD66", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD66" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515024", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515024", "resource": "KEGG Pathway" }, { "id": "R-SSC-5620912", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "resource": "Reactome", "description": "Anchoring of the basal body to the plasma membrane" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0B4KGJ7-1", "protein_name": "Meckelin", "gene_name": "Dmel\\CG15923", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MRMRMRCFSRAINWCCALFWIALQIPVPICSLTTAATNPSQLPTPHTFRFQNPTQCLKNEFYNLNLFDCVPCNEVAGGDGVQGKLQPDKFTCKCPAGHLSIYERGKTWPTCDEICTPDRSDNCTSVWLPQPRPTNQCSYRYLNSTAAFASQLPVHPLISGIILTHTNPMSRAGDCHSCDMTHNFRYQDFCLASTLLRPYVHYNAFWQATTTPDSSAPSRFGELKFVAFFCLTLRNDTACQQLANLCVLSHFSLEKHSPCSAFLLTQVSDVVMKYAHSGEQVRSLQPFLFYKKGRATKELLSKTLQLPDRKELRLFSTTFGLDGGLKRWGAFHPEMLNMCQQKAPSLRVALPKRESEVSCQLTLERLIDLANQRHNAEFLTVFLNFSSNWQYLLHQLPVLIETLTPENQRPQQEEWQLVKRFQLISASPRDSHLHQTMPRYEDAHKLQQYYSLRYVEDIEIRYTLDKDQPDRVGLPLIRLRYRHIEMGSGNISLSQLYPFTLRISYDQVKRGWDWLILEVALPLLLLLAFAAAVFRLQNLRRRRKADLCQMSSLMEFLLQLAGNVAYALLATTLLLLLLQASNSRLLKILLNTAFVLQFLFLGIHLWRSSQLELFLIDWERPRSSCEGQRLNLDSSSLCSSVRTFVAESSVSAWRVLFTANAWIRLSVTQKYSTLGQVFVVIAGYQFLERFTKGDIFLRCCLIAAAYLLTYLLQIIGHQLFIANPLQKFIDLCSLANISLFSLTEPGFGYYIHGRSPHGFADTDMSSMILQLQRTQTMCGRRGLLMDSDKQAYVILPPRNLHIYLERLLLPFQRSLTGTLSQTMLYQKDIVPSIDGQMERTSIAYASVNRFFCAFIDHAIKDMDYIIKEKSFVEQLLNCEIDNYITENRGTFYIDDSFSFSRVLLLGNHLHIFVLELLLVLSIFLMTSNLLIAAAGACALNILLRQVFRHWVRRNISRKTLIDERFLLXPQNEEQYLREDGFFAI", "length": 984 }, "evidence": [ { "id": "A0A287ABM3", "url": "https://omabrowser.org/oma/group/A0A287ABM3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "A0A8V0YL98-1", "protein_name": "Transmembrane protein 67", "gene_name": "TMEM67", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MATAAALLLLFWISPSARGFSLPLQRPGDCGDERYFDISRLSCGPCGAHQRRSASGSSCVCLPGYRMVSNNGGSSVICEKCPENMSGVTQDGWNCITCPKGMTSEGKCKCLSNEILVERGVDGVLLNEALCIVCNGSPQSFSASDVLGSRCVRCEQTFINVSMSCDCSSPNILSGGLCFSARESLPPKGIATVRFGQVGVTLTSAWFLKNLEASASACWLYSNLTACQALGNMCVMNMNSLSSSSTDACSLFQYIYANTARLGIVHSIAFWRHNLPWLYYGDQPGLASKVLETNHLPTIFSFKGRSEDVKLQFIAASYDAAGNFLKWQSLEGGLLQLCPDTQNKLNAAYVFGTTYEQSCKISIAKILLDFSNPVFYDLFFEYNGDNGQQYLWAVPVLNLNLQYSEMYVNQGSNMNNWLLTRRFFLVDTLSGRENDLGKLPRIIRVASKITISIRLVSHTQKGTIYPPLITVAYTDVLVQNPDTQSVMVSFSVRYEMNQSEAQIQTDITLGVLGGLAVLWSLLRTAGWKRRTGSSVIDLQTVFKFFLFYAGDLANVFFIITVGTGIYWLVFFKAQQFVSVLLPLPSQEKAFVTYVACAFSLKALQFLQLLVSQLTVDIFFIDWERPKGRVLKAVEGEGDVKSAAAPVSIWRTYFIANEWNEMQTVRKINPLFQVLAVLFFLEVVGFSNLALMDSSSSLTRSSESYIAPWSRILRFGVSVALWLAIAFLQIIFFAVFYERFVEDKLSQFVDLCCVSNISVFLLSHSCFGYYIHGRSVHGHADTNMEEMNMNLKREAENLCSQRGLLPNTDGQTFQISISRKMRLQYDRIHETLTRRRGPARFLDSSANTFEQSTRAYNTMNKFLSSFIDHVHKDMDYIVKDKLLLERILGMEFMEPIEKSIFYNDEGHSFSEVLYYGNETTLLIFDILFFSVVDLATQSFVLAAILTYLQQEIFRFIRNKVGRKNLTSKTLVDERFLI", "length": 976 }, "evidence": [ { "id": "A0A287ABM3", "url": "https://omabrowser.org/oma/group/A0A287ABM3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E9QB24-1", "protein_name": "Meckelin isoform X1", "gene_name": "tmem67", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MATGTRSALLYSVSIIILLKISVFSCQQFSISFRQPSDCGVNSYFDISSLSCVKCGSNQVSSKSGLACECQAGSRVLVSNGVSILCQQCPDADQVVTQDGYECIRCPGTVGKDGKCQCPEGSVLVERDGNGNPLIEARCQACSATDPAFSAPDMKGNRCERCGDSFINSSQSCVCGTSNTLAGGMCFPANSLPTSVASSVIFSQLTLPVQSAWFSSFMYSSAAACLLFSNRTACQSLGNMCVMNMHSSSSINNDVCGLYNTIYRTTAAQGSSQDISYWRTNLPWLYYGDQPGMASQALQNEPLPVGFSFKGAQKNTNIELRAAVYSVRGEFLRWESVGRGNLQLCPDTPTRQQSAFKFGTAYKQSCVLSVSELLTGYPEPLFYDVFLVIQNSQDNRLLAVPLLNANQQFNGQFVNQGSDMSKWFLTRRLMLVDTLSGREKSISSSPVVIRVASDIKIGFQLVPNTQKGQVYPPLMSVAYSDIQIKDPSTQTVTVTFSVEYTMNQEEARIKTDIALGVLGGVAVVHSLLKTASWKRRIASPLIDLETIMKFLVFYAGDLANVFFIITVGTGLYWLIFFKAQLFVSVLLPLPAQEERFVVYVGCAFALKTVQFLHKIFVQLSVDVFFIDWERPRGKTTKHVEGSGETKSQASPVSIWRTYFVANEWNEIQTIRKINPTFQVMAVLFFLEVVGFSNLALRDPSSNLNRSAEEYTPPYSLILRYGVATAMWLCIGLIQMIFFTVFHERFVEDKIRQFVDLCSISNISVLLLSHRCFGYYIHGRSVHGHADTNMDEMNTNLKREAENLCGQRGLLPNSDTQTFQISITNRLRAQYDRIIEPISRRRGPSRLVDATANPCEQSTKAYHTMNRFLGSVIDHAHREMDYIVKDKLLFERVIGMEFIEPLDKSIFYNDDSHSFADVLFYGNEGVLLIFDTLFFCVVDLGKQNFILAAVLTYLQQMIFRLIRNGLGRRNLANKTLVDKRFLI", "length": 982 }, "evidence": [ { "id": "A0A287ABM3", "url": "https://omabrowser.org/oma/group/A0A287ABM3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P0C152-1", "protein_name": "Meckelin", "gene_name": "Tmem67", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVMRTRPLAAMAVRSCFSALTGTVYLLLVLCEVSWAQIFSFPFQRPETCDLNQYFDISALSCAPCGANQRRDALGTSCICLPGYHMISNNGGPSIICKKCPENMKGVTKDGWDCISCPNGLTAEGKCHCPSGHILVERNVSGSLLSQATCELCDGNENSFTKPNALGTRCVRCEPTFVNTSRSCSCSEPHISTGGLCFSNTGNFPQRLISTERYGELGMSSNSEWFTKYLQATAAACWTHSNLTSCQALGNMCVMNMNSYDSTTFDACRLFHYVFEGAAGLTGVHSVPFWRQNLPWLFYGDQPGLASQVLSTTPLPTNFSFKGQNQLKFVAASYDIRGNFIRWQTVKGGVLQLCPDTERRLDAAYSFGTTYQQNCEISLSKLLADFPSPVFYDIYLEYTDEVQHHYLWAIPVLNLNLQHNKLFVNQDSSSSKWLLTRRIFLVDAVSGRENDLGNQPRVIRVATQISLSIRLVPNTKNGNIYTPLLTIAYSDIDIKNAYSQSVKISFSVKYEMNQGDAFVQTDIALGVLGGLAVLSSLLKTAGWKRRIGSPMIDLQTVMKFLLYYAGDLANVFFIITVGTGLYWLIFFKAQKSVSVLLPMPVQEERFVTYVGCAFAMKALQFLHKLISQITIDIFFIDWERPKGKVLKAVEGEGGVRSATVPVSIWRTYFVANEWNEIQTVRKINPLFQVLTTLFFLEVVGFKNLALMDPSSSLSRSLSDYAAPYSRILRYAVATTIWLVIGIVQVVFFAAFYERFIEDKIRQFVDLCSMSNVSVFLLSHRCFGYYIHGRSVHGHADTNMEDMNMNLRREAENLCSQRGLVPNTDGQTFQIAVSSQMRQHYDRIHETLTRRNGPARLLSSSGSTLEQSIKAYHAMNKFLGSFIDHVHKEMDYFIKDKLLLEKILGMEFMEPLEKSIFYNDESHSFSSVLYYGNEATLLIFDLLFFCVVDLACQNFVLASFLTYLQQEIFRFIRNTVGQKNLATKTLVDERFLI", "length": 992 }, "evidence": [ { "id": "A0A287ABM3", "url": "https://omabrowser.org/oma/group/A0A287ABM3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5HYA8-1", "protein_name": "Meckelin", "gene_name": "TMEM67", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATRGGAGVAMAVWSLLSARAVTAFLLLFLPRFLQAQTFSFPFQQPEKCDNNQYFDISALSCVPCGANQRQDARGTSCVCLPGFQMISNNGGPAIICKKCPENMKGVTEDGWNCISCPSDLTAEGKCHCPIGHILVERDINGTLLSQATCELCDGNENSFMVVNALGDRCVRCEPTFVNTSRSCACSEPNILTGGLCFSSTGNFPLRRISAARYGEVGMSLTSEWFAKYLQSSAAACWVYANLTSCQALGNMCVMNMNSYDFATFDACGLFQFIFENTAGLSTVHSISFWRQNLPWLFYGDQLGLAPQVLSSTSLPTNFSFKGENQNTKLKFVAASYDIRGNFLKWQTLEGGVLQLCPDTETRLNAAYSFGTTYQQNCEIPISKILIDFPTPIFYDVYLEYTDENQHQYILAVPVLNLNLQHNKIFVNQDSNSGKWLLTRRIFLVDAVSGRENDLGTQPRVIRVATQISLSVHLVPNTINGNIYPPLITIAYSDIDIKDANSQSVKVSFSVTYEMDHGEAHVQTDIALGVLGGLAVLASLLKTAGWKRRIGSPMIDLQTVVKFLVYYAGDLANVFFIITVGTGLYWLIFFKAQKSVSVLLPMPIQEERFVTYVGCAFALKALQFLHKLISQITIDVFFIDWERPKGKVLKAVEGEGGVRSATVPVSIWRTYFVANEWNEIQTVRKINSLFQVLTVLFFLEVVGFKNLALMDSSSSLSRNPPSYIAPYSCILRYAVSAALWLAIGIIQVVFFAVFYERFIEDKIRQFVDLCSMSNISVFLLSHKCFGYYIHGRSVHGHADTNMEEMNMNLKREAENLCSQRGLVPNTDGQTFEIAISNQMRQHYDRIHETLIRKNGPARLLSSSASTFEQSIKAYHMMNKFLGSFIDHVHKEMDYFIKDKLLLERILGMEFMEPMEKSIFYNDEGYSFSSVLYYGNEATLLIFDLLFFCVVDLACQNFILASFLTYLQQEIFRYIRNTVGQKNLASKTLVDQRFLI", "length": 995 }, "evidence": [ { "id": "A0A287ABM3", "url": "https://omabrowser.org/oma/group/A0A287ABM3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ], "pmid": "" }, { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ], "pmid": "" }, { "name": "non-canonical Wnt signaling pathway", "id": "GO:0035567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035567", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ], "pmid": "" }, { "name": "negative regulation of centrosome duplication", "id": "GO:0010826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010826", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "MKS complex", "id": "GO:0036038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036038", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ], "pmid": "" }, { "name": "cytoplasmic vesicle membrane", "id": "GO:0030659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030659", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ], "pmid": "" }, { "name": "ciliary membrane", "id": "GO:0060170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060170", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ], "pmid": "" }, { "name": "ciliary transition zone", "id": "GO:0035869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035869", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "unfolded protein binding", "id": "GO:0051082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051082", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ], "pmid": "" }, { "name": "filamin binding", "id": "GO:0031005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031005", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABM3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABM3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 180, "end_pos": 182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 742, "end_pos": 744, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ABM3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 963, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ABM3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ABM3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 570 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 142, "end_pos": 144 }, { "start_pos": 180, "end_pos": 182 }, { "start_pos": 243, "end_pos": 245 }, { "start_pos": 319, "end_pos": 321 }, { "start_pos": 742, "end_pos": 744 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { 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"count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AA04-1", "uniprot_ac": "A0A287AA04", "uniprot_id": "A0A287AA04_PIG", "mass": { "chemical_mass": 45382.0, "monoisotopic_mass": 45382.0 }, "refseq": {}, "gene_names": [ { "name": "NARF", "type": "recommended", "evidence": [ { "id": "A0A287AA04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04" } ] } ], "protein_names": [ { "name": "Nuclear prelamin A recognition factor", "type": "synonym", "evidence": [ { "id": "A0A287AA04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AA04", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NARF", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04", "locus": { "chromosome": "12", "start_pos": 632363, "end_pos": 651817, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017126", "url": "https://www.ensembl.org/id/ENSSSCG00000017126" } ] } } ], "crossref": [ { "id": "A0A287AA04", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AA04", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017126", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017126", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522949", "url": "https://www.ncbi.nlm.nih.gov/gene/100522949", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009016", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009016", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522949", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522949", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IKFCEHY", "url": "https://omabrowser.org/oma/group/IKFCEHY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S011", "url": "https://www.orthodb.org/?gene=F1S011", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11615", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11615", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02906", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02906", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AA04", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA04-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R396", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R396", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R396-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R396-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S011", "url": "https://www.uniprot.org/uniprotkb/F1S011", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S011-1", "url": "https://www.uniprot.org/uniprotkb/F1S011-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEEKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYAERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQEDVPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDTLFGDVREEVRRHDGASSDGCLAHIFRHAAKELFDEDVGELTYRALRNRDFQEVTLEKSGKVLLRFAAAYGFRNIQNVVLKLKRGRFPYHFVEVLACAGGCLNGRGQAQTEDGRADRALLQRMRGVHAAGPGRTPETSAHVQDLYREWLDGADAPRARGTLHTAHQGPGRPADGRDIKW", "length": 408, "header": "tr|A0A287AA04-1|A0A287AA04_PIG Isoform 1 of Nuclear prelamin A recognition factor OS=Sus scrofa OX=9823 GN=NARF PE=3 SV=2 CANONICAL=A0A287AA04-1" }, "isoforms": [ { "isoform_ac": "A0A287AA04-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04/entry#A0A287AA04-1", "sequence": { "sequence": "MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEEKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYAERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQEDVPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDTLFGDVREEVRRHDGASSDGCLAHIFRHAAKELFDEDVGELTYRALRNRDFQEVTLEKSGKVLLRFAAAYGFRNIQNVVLKLKRGRFPYHFVEVLACAGGCLNGRGQAQTEDGRADRALLQRMRGVHAAGPGRTPETSAHVQDLYREWLDGADAPRARGTLHTAHQGPGRPADGRDIKW", "length": 408, "header": "tr|A0A287AA04-1|A0A287AA04_PIG Isoform 1 of Nuclear prelamin A recognition factor OS=Sus scrofa OX=9823 GN=NARF PE=3 SV=2 CANONICAL=A0A287AA04-1" }, "locus": { "chromosome": "12", "start_pos": 651706, "end_pos": 633650, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045801.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045801.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040651.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040651.2" } ] } }, { "isoform_ac": "A0A5G2R396-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04/entry#A0A5G2R396-1", "sequence": { "sequence": "MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEEKGEFHKLADAKIFLSDCLACDSCVSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYAERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQEDVPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDTLFGDVREEVRRHDGASSDGCLAHIFRHAAKELFDEDVGELTYRALSPLRSCGWTLRQLGGKAFLVSLTDFLSFCWCPDLDRRWCSRQGSRSVVLLPQEQRLSGGDPREEREGSPALCCRLRLPKHPERGPEAEEGQVPVPLCGGPRLRRG", "length": 428, "header": "tr|A0A5G2R396-1|A0A287AA04_PIG Computationally mapped isoform of Nuclear prelamin A recognition factor OS=Sus scrofa OX=9823 GN=NARF PE=3 SV=1 CANONICAL=A0A287AA04-1" }, "locus": { "chromosome": "12", "start_pos": 651706, "end_pos": 635129, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070149.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070149.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070822.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070822.1" } ] } }, { "isoform_ac": "F1S011-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04/entry#F1S011-1", "sequence": { "sequence": "MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEEKGEFHKLADAKIFLSDCLACDSCVSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYAERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQEDVPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDTLFGDVREEVRRHDGASSDGCLAHIFRHAAKELFDEDVGELTYRALRNRDFQEVTLEKSGKVLLRFAAAYGFRNIQNVVLKLKRGRFPYHFVEVLACAGGCLNGRGQAQTEDGRADRALLQRMRGVHAAGPGRTPETSAHVQDLYREWLDGADAPRARGTLHTAHQGPGRPADGRDIKW", "length": 456, "header": "tr|F1S011-1|A0A287AA04_PIG Computationally mapped isoform of Nuclear prelamin A recognition factor OS=Sus scrofa OX=9823 GN=NARF PE=3 SV=4 CANONICAL=A0A287AA04-1" }, "locus": { "chromosome": "12", "start_pos": 651706, "end_pos": 633650, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018644.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018644.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018143.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018143.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R396", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R396" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522949", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522949", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LV62-1", "protein_name": "Nuclear prelamin A recognition factor", "gene_name": "Narf", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKCEHCTRKECSKKSKTDDQENVSIDTSSPAQEKEEKGEFHKLADAKIFLSDCLACDSCVTVEEGVQLSQQSAKDFFHVLNLNKKCDTSKHRVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYHRHSEEQRELPMLTSACPGWVRYAERVLGRPVIPHLCTAKSPQQIMGSLVKDYFARQQNLSPEKIFHVVVAPCYDKKLEALREGLSTTLNGARGTDCVLTSGEIAQIMEQSDLSVKDTAVDTLFGDVKEEVAVWRHDGVSSDGHLAHVFRHAAKELFGEHIEEINYRALRNKDFHEVTLEKNGEVLLRFAAAYGFRNIQNMILKLKKGKFPYHFVEVLACPRGCLNGRGQAQTEDGHTDRALLQQMEGIYSGIPVRPPESSAHVEELYQQWLEGTESPKVQEVLHTTYQSLEPCTDSLDMKW", "length": 457 }, "evidence": [ { "id": "A0A287AA04", "url": "https://omabrowser.org/oma/group/A0A287AA04/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BYV6-1", "protein_name": "Nuclear prelamin A recognition factor", "gene_name": "NARF", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKCENCTKKECSKKQKNDDAQSTSVDVLSSNDDFEEKNEFFTLANAKILLSDCLACDNCMTSEEGARVFQQNQKEFFRILNLNKKCDTSKHKVLAVSICPQSLPYFAAKFSLSVNDAAKRLCGFLKSLGVHYVFDTTIAADFSILESQREFVQRYQRRNQEEHALPMFASACPGWIRYAERVLTNLVTPHICTAKSPQQIMGSLVKGYFARQQNLSPEKIFHVVVAPCYDKKLEALREDFYTALYNSQEVDCVLTSGEIVQIMEQKNVSMKDVTEVAVDSLFGEIKEGDVVRHDGKRSDGYLEHIFKHAAKELFGMDVKEITYKALKNKDFQEVTLEKDGETVLRFAAAYGFRNIQNMVLKLKKGKFLYHFVEVLACPGGCLNGKGQTQTEDGKPDKALLSQMEDVYAAIPVRLPEANVYVQKMYQDWLEGMDSRKVQETLHTKYSAVNQTASNLDIKW", "length": 459 }, "evidence": [ { "id": "A0A287AA04", "url": "https://omabrowser.org/oma/group/A0A287AA04/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q2YDU6-1", "protein_name": "Nuclear prelamin A recognition factor", "gene_name": "Narf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKCEHCTRKECSKKSKTDDQENVSVDVPSPAQENEEKGEFHKLADAKIFLSDCLACDSCVTVEEGVQLSQQSAKDFFHVLNLNKRCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYHQHSEEQRELPMLTSACPGWVRYAERVLGRPIIPYLCTAKSPQQVMGSLVKDYFARQQSLAPEKIFHIVVAPCYDKKLEALREGLSPTLNGARGTDCVLTSGEIAQIMEQSDLSVKDIAVDTLFGDVKEMAVRRHDGVSSDGHLAHVFRHAAKELFGEHVEEITYRALRNKDFHEVTLEKNGEVLLRFAAAYGFRNIQNMIMKLKKGKFPYHFVEVLACPRGCLNGRGQAQTEDGHTDRALLQQMEGIYSGIPVWPPESSTHVQELYQEWLEGTESPKVQEVLHTSYQSLEPCTDSLDIKW", "length": 456 }, "evidence": [ { "id": "A0A287AA04", "url": "https://omabrowser.org/oma/group/A0A287AA04/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6DHP6-1", "protein_name": "Nuclear prelamin A recognition factor", "gene_name": "narf", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSEVKIGRKKEKCENCTKQCNKKQSDESINSLQEKGVASGEVRESTSVQQVLLSACLSCDGCISEDEGKRISQQNLDEINHVLALNKKCDTSKHKILVVSVCPQSVPFFAVKFQLDVSAAAQKLCGFLKSVGVHYVFDTTIAASFSILESQREFVQRYRRKHHDANAMPMFTSSCPGWIRYAERVLGSVVTPHICTARSPQQIMGSLVKNFFARQQKLTPEQVFHVVVAPCFDKKLEAVRDEFYNSILESRDVDCVLTSGEILHLMEQSKVTVEEVDSAPLDHVIGEISDSGLTRHDGRGSEGFLEHIFKHAAKEIFGLDVQDIVYKTLRNRDFQEVALERDGETLLQFAAVYGFRNIQTLVHRMRKGKVPYQLIEVLSCPGGCLSGRGQAEGEGGRPDRTLVQQMEEHYSSLPVRLPETNPEVQRLYQDWLDGHDSPHAQQSLHTQYKDHTHLPAHITNPDIQW", "length": 465 }, "evidence": [ { "id": "A0A287AA04", "url": "https://omabrowser.org/oma/group/A0A287AA04/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9CYQ7-1", "protein_name": "Nuclear prelamin A recognition factor", "gene_name": "Narf", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCEHCTRKECSKKSKTDDQENVSSDGAQPSDGASPAKESEEKGEFHKLADAKIFLSDCLACDSCVTVEEGVQLSQQSAKDFLHVLNLNKRCDTSKHRVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYHQHSEEQRELPMLTSACPGWVRYAERVLGRPIIPYLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVVVAPCYDKKLEALREGLSTTLNGARGTDCVLTSGEIAQIMEQSDLSVKDIAVDTLFGDMKEVAVQRHDGVSSDGHLAHVFRHAAKELFGEHVEEITYRALRNKDFHEVTLEKNGEVLLRFAAAYGFRNIQNMIQKLKKGKLPYHFVEVLACPRGCLNGRGQAQTEDGHTDRALLQQMEGIYSGIPVRPPESSTHVQELYQEWLEGTESPKVQEVLHTSYQSLEPCTDGLDIKW", "length": 462 }, "evidence": [ { "id": "A0A287AA04", "url": "https://omabrowser.org/oma/group/A0A287AA04/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UHQ1-1", "protein_name": "Nuclear prelamin A recognition factor", "gene_name": "NARF", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCMTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW", "length": 456 }, "evidence": [ { "id": "A0A287AA04", "url": "https://omabrowser.org/oma/group/A0A287AA04/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AA04", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A287AA04", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04" } ], "pmid": "" }, { "name": "lamin filament", "id": "GO:0005638", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005638", "evidence": [ { "database": "UniProtKB", "id": "A0A287AA04", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "lamin binding", "id": "GO:0005521", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005521", "evidence": [ { "database": "UniProtKB", "id": "A0A287AA04", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AA04-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 408, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AA04-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AA04" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AA04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AA04" }, { "id": "SM00902", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00902" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Iron hydrogenase small subunit", "eco_id": "ECO_0000259", "start_pos": 342, "end_pos": 398, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 22, "end_pos": 24 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AE79-1", "uniprot_ac": "A0A287AE79", "uniprot_id": "A0A287AE79_PIG", "mass": { "chemical_mass": 487955.0, "monoisotopic_mass": 487955.0 }, "refseq": {}, "gene_names": [ { "name": "VPS13D", "type": "recommended", "evidence": [ { "id": "A0A287AE79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AE79" } ] } ], "protein_names": [ { "name": "Vacuolar protein sorting 13 homolog D", "type": "synonym", "evidence": [ { "id": "A0A287AE79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AE79/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AE79", "url": "https://www.uniprot.org/uniprotkb/A0A287AE79" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VPS13D", "url": "https://www.uniprot.org/uniprotkb/A0A287AE79", "locus": { "chromosome": "6", "start_pos": 72510058, "end_pos": 72256828, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003438", "url": "https://www.ensembl.org/id/ENSSSCG00000003438" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003438", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003438", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14306", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14306", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd23453", "url": 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Classification" ] }, { "id": "IPR056747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16166:SF141", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16166:SF141", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12624", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12624", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25033", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25033", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AE79", "url": "https://www.uniprot.org/uniprotkb/A0A287AE79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AE79-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AE79-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RF72", "url": "https://www.uniprot.org/uniprotkb/F1RF72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RF72-1", "url": "https://www.uniprot.org/uniprotkb/F1RF72-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLEGLVAWVLNTYLGKYVNNLNTDQLSVALLKGAVELENLPLKKDALKELELPFEVKAGLIGKVTLQIPFYRPHVDPWVISISSLHLIGAPEKIQDFNDEKEKLLERERKKALLQALEEKWKNERQQKGESYWYSVTASVVTRIVENIELKIQDVHLRFEDGLTNPAHPFAFGICIKNVSMQNAVNEPVQKLMRKKQLDVAEFSIYWDVDCTLLGDLPQVELQEAMDRSLDRRDHHYILAPVCASALLKRNCSKEPLRSRHAPRIECDIHLETIPLKLSQLQYRQIMEFLKELERKERQAKFRKWKPRVAVSENCREWWYFALNANLHEIREQRTRCTWDFLLHRARDAVSYTDKYFTKLKGGLLSADDTEEMCRIEEEQSFEELKILRELVHERFHKQEELAESLREPQFESPGDSPGDPESGGGGGMLQYLQSWFPGWGGWYGQHSPEGRPGEGLTAERQAPWTPEEILGSEEFFDPTADASCMNTYTKRDHVFAKLNLQLQRGTVTLLHQEQGAPQTNQSAFMQLEFSGVKLLAESLPRRNSSLLLVRLGGLFLRDLATAGTIFPLLVFPNPQKEVGRVSQSFGLQTTSADRSDHCPAADPDDPVFEMLYERNPVHSQFERRLHVSTRPLNIVYNPQAIRKVADFFYKGKVHTSGFGYQSELELRVAEAARRQYNRLKMQTKAEIRQTLDRLLVGDFIEESKRWTVRLDISAPQVIFPDDFKFKNPVLVVVDLGRMLLTNTQDDIKGKSGDGSASEENQFSDDEYKTPLATPPNTPPPETSGSSGEKTPPFSGVEFSEEQLQAQLMSTKMYERYSLSFLDLQIMVGRVKDNWKHVQDIDVGPTHVVEKFNVHLQLERRLIYTSDPKYPGAVLSGNLPDLKIHINEDKIAALKNCFALLTTPEMKTLDTQFKEKIFPQGGQRGSLQDSVMNLTQSIVTLEQHTREVLVESQLLLAEFQVNCMQLGVESNGRYISVLKVFGTNAHFVKRPYDAEVSLTVHGLLLVDTMQTYGADFDLLMASHKNLSFDIPTGSLRDSRAQSPVSGSNAAHFTNAATLNDQSATGISLDRILTKEQESLIKLEYQFVSSECPSMNLDSTLQVISLQVNNLDIILNPETIVELIGFLQKSFPKEKDDLSPQPLMTDFERSFREQGAYQSTYEQNTEVAVEIHRLNLLLLRTVGMAHGEKYGRKIATASIGGTKVNVSMGSTFDVNGSLGCLQLMDLTQDNVKNQYVVSIGNSIGYENIISDIGYFESVFVRMEEAALTEALSFTLVEKSKQECFLSLKMASLHYNHSAKFLKELTLSMDELEENFRSMLKSAATKVTTVLATKTAEYSEMVSLFETPRKAREPFVLEENDIYGFGLEASHSDTVKLILNINIESPVVSVPRKPGSPELLVGHLGQIFIQNFVAGDDESRSDRLQVEIKDIKLYSLNCTQLAGREGPGPEVTRAFCPPAGSASANSQEEAHFTRHDFFESLHRGQAFHILNNTTIQFKLEKIPIERESELTFSLSPDDLGTSSIMKIEGKFVNPVQVVLAKHVYEQVLQTLDNLVYSEDLNKFPVSVASSPCPNSPLPSLSSCGEPSIERKENGLFSHASLSTSSQKSLSVREVRSFTQIQANFCISELQVQLSGDLTLGSQGLVSLKFQDFEVEFSKDHPQTLSIQIALRSLLMEDLLEKNPDSKYKNLMMSRGAPKPSSLAQKEYLSQSCPSVSNVEYPDMPRSLPSHMEEAPNVFQLYQRPTSASRKKQKEVQDKDCPLTPPPSPTVDEPKIFAGKSKFDDSLVHINVFLVDKKHPEFSSSYNRINRSIDVDFNCLDVLITLQTWVVILDFFGIGSTADNHAMKGPPEDVLQNVKSETSTLTESELQDPVNTKLDLKVHSLSLVLNKTTSELAKANVSKLVAHLEMIEGDLALQGSIGSLSLSDLTSHGEFYRERFTTSGEEALIFQTFKYGRPDPLLRREHDVRVRLQMASVQYVHTQRFQAEVVAFIQHFTQLQDVLGRQRAAVEGQAVRDQAQRGSRVLLDIEAGAPVLLIPESSRSNNLIVANLGKLKVRNKFLFAGFPGTFTLQDKESVPSASPTGTPKHSVRKMTSTEDPKGTHSEGLFMMPPAGMSLGSLKSEFGPSTSTRQQGQQATPSVSQVSSSPEDHVCLLDCIVVDLQDMDIFAAERRPREYSKSSEASSGDLLFPSYFVRQTGGSLLTEPCRLKLQVERNLDKEISHTVPDISIHGNLSSVHCSLDLYKYKLIRGLLENNLGEPIEEFMRPYDLQDPRIHTVLSGEVYTCMCFLIDMVNVSLELKDPKGREGAGSLARFDFKKCKLLYESFSNQTKSINLVSHSMMAFDTRYAGQKTSPGTTNVFTCIFQPSKNSSTTQGSIQIELHFRSTKESSCFTVVLNNLRVFLIFDWLLLVHGFLHTPSDIKKQSKVTPSRHRNSSSESAVIPKTVKSGVVTKRSSLPMSTERHLEVKVNVTGTEFVVVEDVSCFDTNAIILKGTTVLTYKPQFVDRPFSGSLFGIEVFSCRLGNEQDTALSIVDPVQIQVELVGNSSYQNSSGLMDAFNSEDFPPVLEIHLQALDIRLSYNDVQLFLAIAKSIPEQASVAVPDAAALESPSLSGHLPSASRGGEEIREGTKHTLDPVLELQLARLQELGFSMDDCRKALLVCQGQLKKAASWLFKNAEPLKSLSLASNSRESQGAAPARLLSGVEMKAESVCICFIDDCMDCDVPLAELTFSRLNFLQHVRTSPEGYAHFTLSGDYYNRALSGWEPFIEPWPCSVSWQQQAASRLHPPRLKLEAKAKHRLDINITSVLMDQYVSTKESWMADYCKQDKEIDSTTSEDWMGSSVDPPCFGQTEMKAPKRRQPFVPFALRNHTGCTLWFATLTTTPTRAALSHSGSPGMVPEGDGTLLDDAHNVSEWREVLTGEEIPFEFEARGKLRHRHTHDLRIHQLQVRVNGWEQVSPVSVDKVGTFFRYAAPDKNSSSSTIGSPGSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVKNRLETPMELRLDSPSAPDKPVVLPAIMPGDSFAVPLHLTSWRLQARPKGLGVFFCKAPIHWTNVVKTAEVSSSKRECHSMDTEKSRFFRFCVAIKKENYPDYMPSNIFSDSAKQIFRQPGHTIYLLPTVVICNLLPCELDFYVKGMPINGTLKPGKEVALHTADTSQNIELGVSLENFPLCKELLIPPGTQNYMVRMRLYDVNRRQLNLTIRIVCRAEGSLKIFISAPYWLINKTGLPLIFRQDNAKTDAAGQFEEHELARSLSPLLFCYADKEQPNLCTMRIGRGIHPEGMPGWCQGFSLDGGSGVRALRVIQQGNRPGLIYNIGIDVKKGRGRYIDTCMVIFAPRYLLDNKSSHKLAFAQREFARGQGTANPEGYISTLPGSSVVFHWPRNDYDQLLCVRLMDVPNCIWSGGFEVNKNNSFHINMRDTLGKCFFLRVEITLRGATYRISFSDTDQLPPPFRIDNFSKVPVVFTQHGVAEPRLRTEVKPMTSLDYAWDEPTLPPFITLTVKGAGSSELICNMNDFQDNRQLYYENFIYIAATYTFSGLQEGTGRPVSSNKAITCAELVLDVSPKTQRVILKKKEPGKRSQLWRMTGTGMLAHEGSSVPHNPSKPSAARSTEGSAILDIAGLAAVTDNRYEPLMLRKPDRRRSTTQTWSFREGRLTCGLHGLVVQAKGGLSGLFDGAEVVLGPDTSVELLGPVPPEQQFVHQKMRPGSGMLSIRVIPDGPTRALQITDFSQRKSDRSSYEVDELPVTEQELQKLKNPDTEQELEVLVKLEGGIGLSLINKVPEELVFASLTGISVHYTQLATSHMLELSIQDVQVDNQLIGTTQPFMLYVTPLSNENEVIETGPAVQVNAVKFPSKSALTNIYKHLLVTAQRFTVQIEEKLLLKLLSFFGYDQAESEVEKYDENLHEKTVEQGGTPIRYYFENLKISIPQIKLSVFTSNKLPLDLKALKSTLGFPLIRFEDAVINLDPFTRVHPYETKEFIINDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSEGVTGLIKYGNVGGLIRNVTHGVSNSAAKFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENVDSYCVLISSKAVYFLRSGDYVDREAVFLEVKYDDLYHCLVSKDHGKVYVQVTKKAVNSSSGVAIPGPSHQKPMVHVKSEVLAVKLSQEINYAKSLYYEQQLMLRLSENQEQLELDSE", "length": 4365, "header": "tr|A0A287AE79-1|A0A287AE79_PIG Isoform 1 of Vacuolar protein sorting 13 homolog D OS=Sus scrofa OX=9823 GN=VPS13D PE=3 SV=2 CANONICAL=A0A287AE79-1" }, "isoforms": [ { "isoform_ac": "A0A287AE79-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AE79/entry#A0A287AE79-1", "sequence": { "sequence": "MLEGLVAWVLNTYLGKYVNNLNTDQLSVALLKGAVELENLPLKKDALKELELPFEVKAGLIGKVTLQIPFYRPHVDPWVISISSLHLIGAPEKIQDFNDEKEKLLERERKKALLQALEEKWKNERQQKGESYWYSVTASVVTRIVENIELKIQDVHLRFEDGLTNPAHPFAFGICIKNVSMQNAVNEPVQKLMRKKQLDVAEFSIYWDVDCTLLGDLPQVELQEAMDRSLDRRDHHYILAPVCASALLKRNCSKEPLRSRHAPRIECDIHLETIPLKLSQLQYRQIMEFLKELERKERQAKFRKWKPRVAVSENCREWWYFALNANLHEIREQRTRCTWDFLLHRARDAVSYTDKYFTKLKGGLLSADDTEEMCRIEEEQSFEELKILRELVHERFHKQEELAESLREPQFESPGDSPGDPESGGGGGMLQYLQSWFPGWGGWYGQHSPEGRPGEGLTAERQAPWTPEEILGSEEFFDPTADASCMNTYTKRDHVFAKLNLQLQRGTVTLLHQEQGAPQTNQSAFMQLEFSGVKLLAESLPRRNSSLLLVRLGGLFLRDLATAGTIFPLLVFPNPQKEVGRVSQSFGLQTTSADRSDHCPAADPDDPVFEMLYERNPVHSQFERRLHVSTRPLNIVYNPQAIRKVADFFYKGKVHTSGFGYQSELELRVAEAARRQYNRLKMQTKAEIRQTLDRLLVGDFIEESKRWTVRLDISAPQVIFPDDFKFKNPVLVVVDLGRMLLTNTQDDIKGKSGDGSASEENQFSDDEYKTPLATPPNTPPPETSGSSGEKTPPFSGVEFSEEQLQAQLMSTKMYERYSLSFLDLQIMVGRVKDNWKHVQDIDVGPTHVVEKFNVHLQLERRLIYTSDPKYPGAVLSGNLPDLKIHINEDKIAALKNCFALLTTPEMKTLDTQFKEKIFPQGGQRGSLQDSVMNLTQSIVTLEQHTREVLVESQLLLAEFQVNCMQLGVESNGRYISVLKVFGTNAHFVKRPYDAEVSLTVHGLLLVDTMQTYGADFDLLMASHKNLSFDIPTGSLRDSRAQSPVSGSNAAHFTNAATLNDQSATGISLDRILTKEQESLIKLEYQFVSSECPSMNLDSTLQVISLQVNNLDIILNPETIVELIGFLQKSFPKEKDDLSPQPLMTDFERSFREQGAYQSTYEQNTEVAVEIHRLNLLLLRTVGMAHGEKYGRKIATASIGGTKVNVSMGSTFDVNGSLGCLQLMDLTQDNVKNQYVVSIGNSIGYENIISDIGYFESVFVRMEEAALTEALSFTLVEKSKQECFLSLKMASLHYNHSAKFLKELTLSMDELEENFRSMLKSAATKVTTVLATKTAEYSEMVSLFETPRKAREPFVLEENDIYGFGLEASHSDTVKLILNINIESPVVSVPRKPGSPELLVGHLGQIFIQNFVAGDDESRSDRLQVEIKDIKLYSLNCTQLAGREGPGPEVTRAFCPPAGSASANSQEEAHFTRHDFFESLHRGQAFHILNNTTIQFKLEKIPIERESELTFSLSPDDLGTSSIMKIEGKFVNPVQVVLAKHVYEQVLQTLDNLVYSEDLNKFPVSVASSPCPNSPLPSLSSCGEPSIERKENGLFSHASLSTSSQKSLSVREVRSFTQIQANFCISELQVQLSGDLTLGSQGLVSLKFQDFEVEFSKDHPQTLSIQIALRSLLMEDLLEKNPDSKYKNLMMSRGAPKPSSLAQKEYLSQSCPSVSNVEYPDMPRSLPSHMEEAPNVFQLYQRPTSASRKKQKEVQDKDCPLTPPPSPTVDEPKIFAGKSKFDDSLVHINVFLVDKKHPEFSSSYNRINRSIDVDFNCLDVLITLQTWVVILDFFGIGSTADNHAMKGPPEDVLQNVKSETSTLTESELQDPVNTKLDLKVHSLSLVLNKTTSELAKANVSKLVAHLEMIEGDLALQGSIGSLSLSDLTSHGEFYRERFTTSGEEALIFQTFKYGRPDPLLRREHDVRVRLQMASVQYVHTQRFQAEVVAFIQHFTQLQDVLGRQRAAVEGQAVRDQAQRGSRVLLDIEAGAPVLLIPESSRSNNLIVANLGKLKVRNKFLFAGFPGTFTLQDKESVPSASPTGTPKHSVRKMTSTEDPKGTHSEGLFMMPPAGMSLGSLKSEFGPSTSTRQQGQQATPSVSQVSSSPEDHVCLLDCIVVDLQDMDIFAAERRPREYSKSSEASSGDLLFPSYFVRQTGGSLLTEPCRLKLQVERNLDKEISHTVPDISIHGNLSSVHCSLDLYKYKLIRGLLENNLGEPIEEFMRPYDLQDPRIHTVLSGEVYTCMCFLIDMVNVSLELKDPKGREGAGSLARFDFKKCKLLYESFSNQTKSINLVSHSMMAFDTRYAGQKTSPGTTNVFTCIFQPSKNSSTTQGSIQIELHFRSTKESSCFTVVLNNLRVFLIFDWLLLVHGFLHTPSDIKKQSKVTPSRHRNSSSESAVIPKTVKSGVVTKRSSLPMSTERHLEVKVNVTGTEFVVVEDVSCFDTNAIILKGTTVLTYKPQFVDRPFSGSLFGIEVFSCRLGNEQDTALSIVDPVQIQVELVGNSSYQNSSGLMDAFNSEDFPPVLEIHLQALDIRLSYNDVQLFLAIAKSIPEQASVAVPDAAALESPSLSGHLPSASRGGEEIREGTKHTLDPVLELQLARLQELGFSMDDCRKALLVCQGQLKKAASWLFKNAEPLKSLSLASNSRESQGAAPARLLSGVEMKAESVCICFIDDCMDCDVPLAELTFSRLNFLQHVRTSPEGYAHFTLSGDYYNRALSGWEPFIEPWPCSVSWQQQAASRLHPPRLKLEAKAKHRLDINITSVLMDQYVSTKESWMADYCKQDKEIDSTTSEDWMGSSVDPPCFGQTEMKAPKRRQPFVPFALRNHTGCTLWFATLTTTPTRAALSHSGSPGMVPEGDGTLLDDAHNVSEWREVLTGEEIPFEFEARGKLRHRHTHDLRIHQLQVRVNGWEQVSPVSVDKVGTFFRYAAPDKNSSSSTIGSPGSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVKNRLETPMELRLDSPSAPDKPVVLPAIMPGDSFAVPLHLTSWRLQARPKGLGVFFCKAPIHWTNVVKTAEVSSSKRECHSMDTEKSRFFRFCVAIKKENYPDYMPSNIFSDSAKQIFRQPGHTIYLLPTVVICNLLPCELDFYVKGMPINGTLKPGKEVALHTADTSQNIELGVSLENFPLCKELLIPPGTQNYMVRMRLYDVNRRQLNLTIRIVCRAEGSLKIFISAPYWLINKTGLPLIFRQDNAKTDAAGQFEEHELARSLSPLLFCYADKEQPNLCTMRIGRGIHPEGMPGWCQGFSLDGGSGVRALRVIQQGNRPGLIYNIGIDVKKGRGRYIDTCMVIFAPRYLLDNKSSHKLAFAQREFARGQGTANPEGYISTLPGSSVVFHWPRNDYDQLLCVRLMDVPNCIWSGGFEVNKNNSFHINMRDTLGKCFFLRVEITLRGATYRISFSDTDQLPPPFRIDNFSKVPVVFTQHGVAEPRLRTEVKPMTSLDYAWDEPTLPPFITLTVKGAGSSELICNMNDFQDNRQLYYENFIYIAATYTFSGLQEGTGRPVSSNKAITCAELVLDVSPKTQRVILKKKEPGKRSQLWRMTGTGMLAHEGSSVPHNPSKPSAARSTEGSAILDIAGLAAVTDNRYEPLMLRKPDRRRSTTQTWSFREGRLTCGLHGLVVQAKGGLSGLFDGAEVVLGPDTSVELLGPVPPEQQFVHQKMRPGSGMLSIRVIPDGPTRALQITDFSQRKSDRSSYEVDELPVTEQELQKLKNPDTEQELEVLVKLEGGIGLSLINKVPEELVFASLTGISVHYTQLATSHMLELSIQDVQVDNQLIGTTQPFMLYVTPLSNENEVIETGPAVQVNAVKFPSKSALTNIYKHLLVTAQRFTVQIEEKLLLKLLSFFGYDQAESEVEKYDENLHEKTVEQGGTPIRYYFENLKISIPQIKLSVFTSNKLPLDLKALKSTLGFPLIRFEDAVINLDPFTRVHPYETKEFIINDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSEGVTGLIKYGNVGGLIRNVTHGVSNSAAKFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENVDSYCVLISSKAVYFLRSGDYVDREAVFLEVKYDDLYHCLVSKDHGKVYVQVTKKAVNSSSGVAIPGPSHQKPMVHVKSEVLAVKLSQEINYAKSLYYEQQLMLRLSENQEQLELDSE", "length": 4365, "header": "tr|A0A287AE79-1|A0A287AE79_PIG Isoform 1 of Vacuolar protein sorting 13 homolog D OS=Sus scrofa OX=9823 GN=VPS13D PE=3 SV=2 CANONICAL=A0A287AE79-1" }, "locus": { "chromosome": "6", "start_pos": 72510052, "end_pos": 72261049, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039196.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039196.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042149.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042149.2" } ] } }, { "isoform_ac": "F1RF72-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AE79/entry#F1RF72-1", "sequence": { "sequence": "MLEGLVAWVLNTYLGKYVNNLNTDQLSVALLKGAVELENLPLKKDALKELELPFEVKAGLIGKVTLQIPFYRPHVDPWVISISSLHLIGAPEKIQDFNDEKEKLLERERKKALLQALEEKWKNERQQKGESYWYSVTASVVTRIVENIELKIQDVHLRFEDGLTNPAHPFAFGICIKNVSMQNAVNEPVQKLMRKKQLDVAEFSIYWDVDCTLLGDLPQVELQEAMDRSLDRRDHHYILAPVCASALLKRNCSKEPLRSRHAPRIECDIHLETIPLKLSQLQYRQIMEFLKELERKERQAKFRKWKPRVAVSENCREWWYFALNANLHEIREQRTRCTWDFLLHRARDAVSYTDKYFTKLKGGLLSADDTEEMCRIEEEQSFEELKILRELVHERFHKQEELAESLREPQFESPGDSPGDPESGGGGGMLQYLQSWFPGWGGWYGQHSPEGRPGEGLTAERQAPWTPEEILGSEEFFDPTADASCMNTYTKRDHVFAKLNLQLQRGTVTLLHQEQGAPQTNQSAFMQLEFSGVKLLAESLPRRNSSLLLVRLGGLFLRDLATAGTIFPLLVFPNPQKEVGRVSQSFGLQTTSADRSDHCPAADPDDPVFEMLYERNPVHSQFERRLHVSTRPLNIVYNPQAIRKVADFFYKGKVHTSGFGYQSELELRVAEAARRQYNRLKMQTKAEIRQTLDRLLVGDFIEESKRWTVRLDISAPQVIFPDDFKFKNPVLVVVDLGRMLLTNTQDDIKGKSGDGSASEENQFSDDEYKTPLATPPNTPPPETSGSSGEKTPPFSGVEFSEEQLQAQLMSTKMYERYSLSFLDLQIMVGRVKDNWKHVQDIDVGPTHVVEKFNVHLQLERRLIYTSDPKYPGAVLSGNLPDLKIHINEDKIAALKNCFALLTTPEMKTLDTQFKEKIFPQGGQRGSLQDSVMNLTQSIVTLEQHTREVLVESQLLLAEFQVNCMQLGVESNGRYISVLKVFGTNAHFVKRPYDAEVSLTVHGLLLVDTMQTYGADFDLLMASHKNLSFDIPTGSLRDSRAQSPVSGSNAAHFTNAATLNDQSATGISLDRILTKEQESLIKLEYQFVSSECPSMNLDSTLQVISLQVNNLDIILNPETIVELIGFLQKSFPKEKDDLSPQPLMTDFERSFREQGAYQSTYEQNTEVAVEIHRLNLLLLRTVGMAHGEKYGRKIATASIGGTKVNVSMGSTFDVNGSLGCLQLMDLTQDNVKNQYVVSIGNSIGYENIISDIGYFESVFVRMEEAALTEALSFTLVEKSKQECFLSLKMASLHYNHSAKFLKELTLSMDELEENFRSMLKSAATKVTTVLATKTAEYSEMVSLFETPRKAREPFVLEENDIYGFGLEASHSDTVKLILNINIESPVVSVPRKPGSPELLVGHLGQIFIQNFVAGDDESRSDRLQVEIKDIKLYSLNCTQLAGREGPGPEVTRAFCPPAGSASANSQEEAHFTRHDFFESLHRGQAFHILNNTTIQFKLEKIPIERESELTFSLSPDDLGTSSIMKIEGKFVNPVQVVLAKHVYEQVLQTLDNLVYSEDLNKFPVSVASSPCPNSPLPSLSSCGEPSIERKENGLFSHASLSTSSQKSLSVREVRSFTQIQANFCISELQVQLSGDLTLGSQGLVSLKFQDFEVEFSKDHPQTLSIQIALRSLLMEDLLEKNPDSKYKNLMMSRGAPKPSSLAQKEYLSQSCPSVSNVEYPDMPRSLPSHMEEAPNVFQLYQRPTSASRKKQKEVQDKDCPLTPPPSPTVDEPKIFAGKSKFDDSLVHINVFLVDKKHPEFSSSYNRINRSIDVDFNCLDVLITLQTWVVILDFFGIGSTADNHAMKGPPEDVLQNVKSETSTLTESELQDPVNTKLDLKVHSLSLVLNKTTSELAKANVSKLVAHLEMIEGDLALQGSIGSLSLSDLTSHGEFYRERFTTSGEEALIFQTFKYGRPDPLLRREHDVRVRLQMASVQYVHTQRFQAEVVAFIQHFTQLQDVLGRQRAAVEGQAVRDQAQRGSRVLLDIEAGAPVLLIPESSRSNNLIVANLGKLKVRNKFLFAGFPGTFTLQDKESVPSASPTGTPKHSVRKMTSTEDPKGTHSEGLFMMPPAGMSLGSLKSEFGPSTSTRQQGQQATPSVSQVSSSPEDHVCLLDCIVVDLQDMDIFAAERRPREYSKSSEASSGDLLFPSYFVRQTGGSLLTEPCRLKLQVERNLDKEISHTVPDISIHGNLSSVHCSLDLYKYKLIRGLLENNLGEPIEEFMRPYDLQDPRIHTVLSGEVYTCMCFLIDMVNVSLELKDPKGREGAGSLARFDFKKCKLLYESFSNQTKSINLVSHSMMAFDTRYAGQKTSPGTTNVFTCIFQPSKNSSTTQGSIQIELHFRSTKESSCFTVVLNNLRVFLIFDWLLLVHGFLHTPSDIKKQSKVTPSRHRNSSSESAVIPKTVKSGVVTKRSSLPMSTERHLEVKVNVTGTEFVVVEDVSCFDTNAIILKGTTVLTYKPQFVDRPFSGSLFGIEVFSCRLGNEQDTALSIVDPVQIQVELVGNSSYQNSSGLMDAFNSEDFPPVLEIHLQALDIRLSYNDVQLFLAIAKSIPEQASVAVPDAAALESPSLSGHLPSASRGGEEIREGTKHTLDPVLELQLARLQELGFSMDDCRKALLVCQGQLKKAASWLFKNAEPLKSLSLASNSRESQGAAPARLLSGVEMKAESVCICFIDDCMDCDVPLAELTFSRLNFLQHVRTSPEGYAHFTLSGDYYNRALSGWEPFIEPWPCSVSWQQQAASRLHPPRLKLEAKAKHRLDINITSVLMDQYVSTKESWMADYCKQDKEIDSTTSEDWMGSSVDPPCFGQSLPLVYLRTRSTASLTNLEHQIYARAEMKAPKRRQPFVPFALRNHTGCTLWFATLTTTPTRAALSHSGSPGMVPEGDGTLLDDAHNVSEWREVLTGEEIPFEFEARGKLRHRHTHDLRIHQLQVRVNGWEQVSPVSVDKVGTFFRYAAPDKNSSSSTIGSPGSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVKNRLETPMELRLDSPSAPDKPVVLPAIMPGDSFAVPLHLTSWRLQARPKGLGVFFCKAPIHWTNVVKTAEVSSSKRECHSMDTEKSRFFRFCVAIKKENYPDYMPSNIFSDSAKQIFRQPGHTIYLLPTVVICNLLPCELDFYVKGMPINGTLKPGKEVALHTADTSQNIELGVSLENFPLCKELLIPPGTQNYMVRMRLYDVNRRQLNLTIRIVCRAEGSLKIFISAPYWLINKTGLPLIFRQDNAKTDAAGQFEEHELARSLSPLLFCYADKEQPNLCTMRIGRGIHPEGMPGWCQGFSLDGGSGVRALRVIQQGNRPGLIYNIGIDVKKGRGRYIDTCMVIFAPRYLLDNKSSHKLAFAQREFARGQGTANPEGYISTLPGSSVVFHWPRNDYDQLLCVRLMDVPNCIWSGGFEVNKNNSFHINMRDTLGKCFFLRVEITLRGATYRISFSDTDQLPPPFRIDNFSKVPVVFTQHGVAEPRLRTEVKPMTSLDYAWDEPTLPPFITLTVKGAGSSELICNMNDFQDNRQLYYENFIYIAATYTFSGLQEGTGRPVSSNKAITCAELVLDVSPKTQRVILKKKEPGKRSQLWRMTGTGMLAHEGSSVPHNPSKPSAARSTEGSAILDIAGLAAVTDNRYEPLMLRKPDRRRSTTQTWSFREGRLTCGLHGLVVQAKGGLSGLFDGAEVVLGPDTSVELLGPVPPEQQFVHQKMRPGSGMLSIRVIPDGPTRALQITDFSQRKSDRSSYEVDELPVTEQELQKLKNPDTEQELEVLVKLEGGIGLSLINKVPEELVFASLTGISVHYTQLATSHMLELSIQDVQVDNQLIGTTQPFMLYVTPLSNENEVIETGPAVQVNAVKFPSKSALTNIYKHLLVTAQRFTVQIEEKLLLKLLSFFGYDQAESEVEKYDENLHEKTVEQGGTPIRYYFENLKISIPQIKLSVFTSNKLPLDLKALKSTLGFPLIRFEDAVINLDPFTRVHPYETKEFIINDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSEGVTGLIKYGNVGGLIRNVTHGVSNSAAKFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENVDSYCVLISSKAVYFLRSGDYVDREAVFLEVKYDDLYHCLVSKDHGKVYVQVTKKAVNSSSGVAIPGPSHQKPMVHVKSEVLAVKLSQEINYAKSLYYEQQLMLRLSENQEQLELDSE", "length": 4390, "header": "tr|F1RF72-1|A0A287AE79_PIG Computationally mapped isoform of Vacuolar protein sorting 13 homolog D OS=Sus scrofa OX=9823 GN=VPS13D PE=3 SV=4 CANONICAL=A0A287AE79-1" }, "locus": { "chromosome": "6", "start_pos": 72510052, "end_pos": 72261049, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003816.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003816.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003729.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003729.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1767, "start_aa": "Thr", "end_pos": 1767, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1767", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2136, "start_aa": "Thr", "end_pos": 2136, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2136", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3761, "start_aa": "Thr", "end_pos": 3761, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3761", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RF72", "url": "https://www.uniprot.org/uniprotkb/F1RF72" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of mitophagy", "id": "GO:1901526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901526", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE79", "url": "https://www.uniprot.org/uniprotkb/A0A287AE79" } ], "pmid": "" }, { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE79", "url": "https://www.uniprot.org/uniprotkb/A0A287AE79" } ], "pmid": "" }, { "name": "mitochondrion organization", "id": "GO:0007005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007005", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE79", "url": "https://www.uniprot.org/uniprotkb/A0A287AE79" } ], "pmid": "" }, { "name": "protein retention in Golgi apparatus", "id": "GO:0045053", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045053", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE79", "url": "https://www.uniprot.org/uniprotkb/A0A287AE79" } ], "pmid": "" }, { "name": "protein targeting to vacuole", "id": "GO:0006623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006623", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE79", "url": "https://www.uniprot.org/uniprotkb/A0A287AE79" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1025, "end_pos": 1027, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1204, "end_pos": 1206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1214, "end_pos": 1216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1294, "end_pos": 1296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1435, "end_pos": 1437, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1489, "end_pos": 1491, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1490, "end_pos": 1492, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1807, "end_pos": 1809, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1887, "end_pos": 1889, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1897, "end_pos": 1899, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2231, "end_pos": 2233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2293, "end_pos": 2295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2327, "end_pos": 2329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2368, "end_pos": 2370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2433, "end_pos": 2435, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2469, "end_pos": 2471, "annotation": "n_glycosylation_sequon" }, { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2545, "end_pos": 2547, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2550, "end_pos": 2552, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2803, "end_pos": 2805, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2869, "end_pos": 2871, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2911, "end_pos": 2913, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2977, "end_pos": 2979, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3179, "end_pos": 3181, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3238, "end_pos": 3240, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3263, "end_pos": 3265, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3382, "end_pos": 3384, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3450, "end_pos": 3452, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3496, "end_pos": 3498, "annotation": 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"MDLKFNNSRKYVSITVPSKTQAMSPHIKSIDDIVVLGINLSRFNKLTQFFICVAGVFVFYLIYGYLQELIFSMEGFKPYGWYLTLVQFAFYSIFGLIELQLIQDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKRYNVADVSAALCMSLGLIWFTLADSTVAPNFNLTGVILISLALCADAVIGNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLTCTSGLGPAVTFCSKNPVRTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVVLGIFLNVYSKNMDKIKLPSLYDLISKTMEARKSRTLAQTV", "length": 369, "header": "tr|A0A287A9F6-1|A0A287A9F6_PIG Isoform 1 of Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Sus scrofa OX=9823 GN=SLC35B3 PE=3 SV=1 CANONICAL=A0A287A9F6-1" }, "isoforms": [ { "isoform_ac": "A0A287A9F6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9F6/entry#A0A287A9F6-1", "sequence": { "sequence": 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"https://www.uniprot.org/uniprotkb/A0A287A9F6/entry#F1RV99-1", "sequence": { "sequence": "DLAQQTKEKLNKGEETNKHPAGNTECGRIRTMDLKFNNSRKYVSITVPSKTQAMSPHIKSIDDIVVLGINLSRFNKLTQFFICVAGVFVFYLIYGYLQELIFSMEGFKPYGWYLTLVQFAFYSIFGLIELQLIQDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKRYNVADVSAALCMSLGLIWFTLADSTVAPNFNLTGVILISLALCADAVIGNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLTCTSGLGPAVTFCSKNPVRTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVVLGIFLNVYSKNMDKIKLPSLYDLISKTMEARKSRTLAQTV", "length": 400, "header": "tr|F1RV99-1|A0A287A9F6_PIG Computationally mapped isoform of Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Sus scrofa OX=9823 GN=SLC35B3 PE=3 SV=4 CANONICAL=A0A287A9F6-1" }, "locus": { "chromosome": "7", "start_pos": 5601292, "end_pos": 5583000, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001126.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001126.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001104.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001104.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RV99", "url": "https://www.uniprot.org/uniprotkb/F1RV99" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157111", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157111", "resource": "KEGG Pathway" }, { "id": "R-SSC-174362", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174362", "resource": "Reactome", "description": "Transport and metabolism of PAPS" }, { "id": "R-SSC-727802", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-727802", "resource": "Reactome", "description": "Transport of nucleotide sugars" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MBW9-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 2", "gene_name": "Slc35b3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLKFNNSRKYVSITVPSKTQTMSPHIKSVDDIVVLGINLSKFNKLTQFFICVAGVFVFYLIYGYLQELIFSMEGFKPYGWYLTLVQFAFYSIFGLIELQLIQDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKRYNLADVSAAVCMSLGLIWFTLADSTIAPNFNLTGVMLISLALCADAVIGNVQEKAMKLHSASNSEMVLYSYSIGFVYILLGLSCTSGLGPAVAFCSKNPVRTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVVLGIFLNVYSKNMDKIRLPSVYNLINKAMDVKKARTLAQTV", "length": 369 }, "evidence": [ { "id": "A0A287A9F6", "url": "https://omabrowser.org/oma/group/A0A287A9F6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I6ACP7-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 2", "gene_name": "Slc35b3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLKFNNSRKYVSITVPSKTQTMSPHIKSVEDVVVLGVNLSRFKKLTQFLICVAGVFVFYLIYGYLQELIFSMEGFKPYGWYLTLVQFAFYSVFGLIELQLTQDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKRYNLADVSAAVCMSLGLIWFTLADSTIAPNFNLTGVMLISLALCADAVIGNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLSCTSGLGPALAFCSKNPVRTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFLFFAKPFTFQYIWSGLLVVLGIFLNVYSKNMDKIRLPSVYSVIKKAMDMKKSRTLAQTV", "length": 369 }, "evidence": [ { "id": "A0A287A9F6", "url": "https://omabrowser.org/oma/group/A0A287A9F6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AAA9SAA4-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 2", "gene_name": "SLC35B3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRAPGEEAAAAAAAEAEVASAGVGEEETQEDLAQQAEGGLNKGEETNKDNFGSTECGKTRTMDLKFNSSRKYISITVPSKTQAMSPHIKSIDDIVVLGINLSRFNKLTQFFICVAGVFVFYLIYGYLQELIFSVEGFKPYGWYLTLVQFAFYSIFGLIELQLIQDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKRYNVADVSAALCMSLGLIWFTLADSTVAPNFNLTGVVLISLALCADAVIGNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLTCTSGLGPAVTFCSKDPIRTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGFLVVLGIFLNVYSKNMDKMRLPSAYDLINRVMDLRKSRTLAQTV", "length": 430 }, "evidence": [ { "id": "A0A287A9F6", "url": "https://omabrowser.org/oma/group/A0A287A9F6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1P4W7-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 2", "gene_name": "SLC35B3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDLKFTSARKYVSISVPSKSQTMSPHIKSVDDVIVLGINLSKFNKPAQFFICVSGVFMFYLIYGYLQELIFSVEGFKPFGWYLTLVQFGFYSVFGLIELQLIQDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMVGGVFIQGKRYNIADVSAALCMSLGLIWFTLADSTVAPNFNLTGVVLISLALCADAVIGNVQEKAMKLHNGSNSEMVLYSYSIGFLYILLGLTCTSGLSPAVAFCSQHPIQTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTIVLSFLFFAKPFTFQYVWSGLLVVLGIFLNVYSKNMDKIKLPSLHGIWKKNVEERKTRTLSQTV", "length": 369 }, "evidence": [ { "id": "A0A287A9F6", "url": "https://omabrowser.org/oma/group/A0A287A9F6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q922Q5-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 2", "gene_name": "Slc35b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLKFNNSRKYVSISVPSKTQAMSPHIKSVEDVVVLGVNLSKFSKLTQFLICVAGVFVFYLIYGYLQELIFSVEGFKPYGWYLTLVQFAFYSVFGLIELQLTQDRRRRIPGKTYMLIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKRYNLADVSAAVCMSLGLIWFTLADSTIAPNFNLTGVMLISLALCADAVIGNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLSCTSGLGPAVAFCSKNPVGTYGYAFLFSLTGYFGISFVLALIKIFGALLAVTVTTGRKAMTVVLSFLFFAKPFTFQYIWSGLLVVLGIFLNVYSKNMDKIRLPSVYNMIKKAMDMKKSRTLAQTV", "length": 369 }, "evidence": [ { "id": "A0A287A9F6", "url": "https://omabrowser.org/oma/group/A0A287A9F6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H1N7-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 2", "gene_name": "SLC35B3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDLTQQAKDIQNITVQETNKNNSESIECSKITMDLKFNNSRKYISITVPSKTQTMSPHIKSVDDVVVLGMNLSKFNKLTQFFICVAGVFVFYLIYGYLQELIFSVEGFKSCGWYLTLVQFAFYSIFGLIELQLIQDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKRYNVADVSAAICMSLGLIWFTLADSTTAPNFNLTGVVLISLALCADAVIGNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLTCTSGLGPAVTFCAKNPVRTYGYAFLFSLTGYFGISFVLALIKIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVVLGIFLNVYSKNMDKIRLPSLYDLINKSVEARKSRTLAQTV", "length": 401 }, "evidence": [ { "id": "A0A287A9F6", "url": "https://omabrowser.org/oma/group/A0A287A9F6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VVD9-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 2", "gene_name": "Papst2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MYIDTSASSRMTDNKGSVITINGGESAGNSPPSQRKSSTSESPPELRILCFDLTYYNRTTQFLLSCAGVFFLYILYGYLQELIFTVEGFKPYGWFLTLVQFGYYIGFGLVERRLEGYRISGGSFWNIEPEPRCIPMRTYLILAALTLGTMGLSNSSLGYLNYPTQVIFKCCKLIPVLVGSILIQGKRYGLLDFAAATCMCIGLAWFTLADSQMTPNFNLLGVAMISGALLCDAAIGNVQEKAMREFKAPSSEVVFYSYGLGFVYLFVIMLVTGNFFSGFAFCLEHPVETFGYGFLFSLSGYLGIQFVLALVRSSGAPIAATVTTARKAVTIAFSFVLFSKPFTLQYLWSGLIVVLGIYLNVYSKRNKLTLADVRQRIKQFGAKVARSPSRKFLIEV", "length": 396 }, "evidence": [ { "id": "A0A287A9F6", "url": "https://omabrowser.org/oma/group/A0A287A9F6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9F6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9F6" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9F6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9F6" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9F6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9F6" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9F6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9F6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9F6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9F6" } ], "pmid": "" }, { "name": "3'-phosphoadenosine 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"Protein" ] }, { "id": "A0A287A650-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A650-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RC20", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RC20-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC20-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RX94", "url": "https://www.uniprot.org/uniprotkb/F1RX94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RX94-1", "url": "https://www.uniprot.org/uniprotkb/F1RX94-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELGLSPSHLSSSPEDLYPAPGTPPGTPPSPDVPLSGEVKRSQPLPIPTSRKLREEEPRSTSLPAIPNPFPELCSPPSQTPILGGPSSARGLLPRDASRPHVIKVYSEDGACRSVEVAAGATARYVCEMLVQRSHALSDENWGLVECHPHLALERGLEDHESVVEVQAAWPIGGDSRFVFRKNFAKYELFKNAPHSLFPEKMVSSCLDAHTGLSHEDLIQNFLNAGSFPEIQGFLQLRGSGRKLWKRFFCFLRRSGLYYSTKGTSKDPRHLQYVADVNESNVYVVTQGRKLYGMPTDFGFCIKPNKLRNGHKGLRIFCSEDEQSRTCWLAAFRLFKYGVQLYKNYQQAQSRHLRPSCAGSPPLRSVSDNTLVAMDFSGHAGRVIENPREALSAALEEAQAWRKKTNHRLSLPTPSSGTSLSAAIHRTQPWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHVQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL", "length": 531, "header": "tr|A0A287A650-1|A0A287A650_PIG Isoform 1 of Growth factor receptor bound protein 7 OS=Sus scrofa OX=9823 GN=GRB7 PE=3 SV=1 CANONICAL=A0A287A650-1" }, "isoforms": [ { "isoform_ac": "A0A287A650-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A650/entry#A0A287A650-1", "sequence": { "sequence": 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"ENSSSCP00000039343.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039343.1" } ] } }, { "isoform_ac": "A0A5G2RC20-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A650/entry#A0A5G2RC20-1", "sequence": { "sequence": "MELGLSPSHLSSSPEDLYPAPGTPPGTPPSPDVPLSGEVKRSQPLPIPTSRKLREEEPRSTSLPAIPNPFPELCSPPSQTPILGGPSSARGLLPRDASRPHVIKVYSEDGACRSVEVAAGATARYVCEMLVQRSHALSDENWGLVECHPHLALERGLEDHESVVEVQAAWPIGGDSRFVFRKNFAKYELFKNAPHSLFPEKMVSSCLDAHTGLSHEDLIQNFLNAGSFPEIQGFLQLRGSGRKLWKRFFCFLRRSGLYYSTKGTSKDPRHLQYVADVNESNVYVVTQGRKLYGMPTDFGFCIKPNKLRNGHKGLRIFCSEDEQSRTCWLAAFRLFKYGVQLYKNYQQAQSRHLRPSCAGSPPLRSVSDNTLVAMDFSGHAGRVIENPREALSAALEEAQAWRKKTNHRLSLPTPSSGTSLSAACSWSERVSGTHRALSSLCATCRKS", "length": 447, "header": "tr|A0A5G2RC20-1|A0A287A650_PIG Computationally mapped isoform of Growth factor receptor bound protein 7 OS=Sus scrofa OX=9823 GN=GRB7 PE=3 SV=1 CANONICAL=A0A287A650-1" }, "locus": { "chromosome": "12", "start_pos": 22579186, "end_pos": 22575383, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081788.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081788.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071747.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071747.1" } ] } }, { "isoform_ac": "F1RX94-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A650/entry#F1RX94-1", "sequence": { "sequence": "MGRWGWGQGHRSRCVSPFSPSDVMELGLSPSHLSSSPEDLYPAPGTPPGTPPSPDVPLSGEVKRSQPLPIPTSRKLREEEPRSTSLPAIPNPFPELCSPPSQTPILGGPSSARGLLPRDASRPHVIKVYSEDGACRSVEVAAGATARYVCEMLVQRSHALSDENWGLVECHPHLALERGLEDHESVVEVQAAWPIGGDSRFVFRKNFAKYELFKNAPHSLFPEKMVSSCLDAHTGLSHEDLIQNFLNAGSFPEIQGFLQLRGSGRKLWKRFFCFLRRSGLYYSTKGTSKDPRHLQYVADVNESNVYVVTQGRKLYGMPTDFGFCIKPNKLRNGHKGLRIFCSEDEQSRTCWLAAFRLFKYGVQLYKNYQQAQSRHLRPSCAGSPPLRSVSDNTLVAMDFSGHAGRVIENPREALSAALEEAQAWRKKTNHRLSLPTPSSGTSLSAAIHRTQPWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHVQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPCLLRHCCTRVAL", "length": 554, "header": "tr|F1RX94-1|A0A287A650_PIG Computationally mapped isoform of Growth factor receptor bound protein 7 OS=Sus scrofa OX=9823 GN=GRB7 PE=3 SV=4 CANONICAL=A0A287A650-1" }, "locus": { "chromosome": "12", "start_pos": 22582345, "end_pos": 22574975, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019048.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019048.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018543.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018543.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 23, "start_aa": "Thr", "end_pos": 23, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr23", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 413, "start_aa": "Thr", "end_pos": 413, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr413", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RC20", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC20" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1306955", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1306955", "resource": "Reactome", "description": "GRB7 events in ERBB2 signaling" }, { "id": "R-SSC-1433557", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1433557", "resource": "Reactome", "description": "Signaling by SCF-KIT" }, { "id": "R-SSC-186763", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-186763", "resource": "Reactome", 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"url": "https://www.ncbi.nlm.nih.gov/gene/100152780", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026708", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026708", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058191", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058191", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZT63", "url": "https://www.orthodb.org/?gene=A0A286ZT63", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A287ABU9", "url": "https://www.orthodb.org/?gene=A0A287ABU9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21616:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21616:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24578", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24578", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013852149", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852149", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZT63", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZT63-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT63-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABU9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQV1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQV1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH15-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH15-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADNLDEFIEERKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPNSQQTRGSLGIDYGLSLPLGEDYERKKHKLKEELRQDYRRYLTQGITQAKRKKNFLSTSETDPSTLGVSLPIGERLSAKERLKLERNKEYNQFLRDKEESIENFRQIEKSTENKNQGNKKPTSQIKPDLPSQIQSSCENAEGPRKDAPTPSETYEELLNQRRLEEDRYRQLDDEIELRNRRITKKTNEEVGISSKKYPRFVSKTDIPDRRFRRFNEDRVFDKQYFSPDQDPEVSEEMDERFRYESDFDRRLLRVYTNDRMYGNRRGNVPSMEYGGDATEQSDVRISSAGNQSTRDNEPSKPTNREICSPFAGMLFGGEDRELIQRRKEKYRQELLEQMAEQQKNKRREKDLDLRVAASGARDPEKSPDRLKQFSVAPRHFEEMIPPERPRVAFQTPLPPLSAPPVPPAPSVYSIPSQKEDLHDGLSSTLGEMVPPRIAPLPPPPLLPPLATNYRTPYDDAYYFYGARNTLDPSLAYYGSGMMGVQPAAYVSAPVTHQPAPPIASTVGQNELKITSDRAVNSGLFFEDKPKPSKQSLQSYQEALQQQIREREERRRKEREEKEEYEAKLEAEMRSYNPWGKGGGGAPLRDTKGNLITDLNRMHRQNIDAYHNPDARTYEDKRAVVSLDQNLATSNAENLEDSANKNSGHMQTQSSPFARGNIFGEPPTELQIKQQELYKNFLRFQIEEKKQREEAERERMRIAEEKEEKRLAEQRARIQQEYEEEQEKKREKEEEQRLKNEELIRLAEERRKEAERKKKEEEEKHNLQLQHYYERENIIGEETKRLRQPSPVVPALQNKIASKLQRPPSVDSILTSFIQESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRRQLRSEERRLQGRLLHMDSDDEVHIRKRERNPMDVFDMARHRLQAPVRRQSPKGLDAATFQNIHDFNELKDRDSETRVDLKFMYPEPPRDHHTLEIQQRALLREQQKRLNRMKMQEGVEVDLDAVSSTKVRDYRMPREDKDDFLKNSLLESDSAFIGAYGETYPAIEDDALPPPSQPPSARERRRNKLKGLDLDKSHPNVPPDGLSLKSVSSISIDQLRMRNEERMRRLNELQTKPINTDDESSLVDPDDIMKHMGDDESNSVATEPWLRPGTSETLKRFMAEQLRQEQLQVPGKPGTLTWQGLSTAHG", "length": 1220, "header": "tr|A0A287ABU9-1|A0A287ABU9_PIG Isoform 1 of Centrosome and spindle pole associated protein 1 OS=Sus scrofa OX=9823 GN=CSPP1 PE=4 SV=1 CANONICAL=A0A287ABU9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZT63-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU9/entry#A0A286ZT63-1", "sequence": { "sequence": "MADNLDEFIEERKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPNSQQTRGSLGIDYGLSLPLGEDYERKKHKLKEELRQDYRRYLTQGITQAKRKKNFLSTSETDPSTLGVSLPIGERLSAKERLKLERNKEYNQFLRDKEESIENFRQIEKSTENKNQGNKKPTSQIKPDLPSQIQSSCENAEGPRKDAPTPSETYEELLNQRRLEEDRYRQLDDEIELRNRRITKKTNEEVGISSKKYPRFVSKTDIPDRRFRRFNEDRVFDKQYFSPDQDPEVSEEMDERFRYESDFDRRLLRVYTNDRMYGNRRGNVPSMEYGGDATEQSDVRISSAGNQSTRDNEPSKPTNREICSPFAGMLFGGEDRELIQRRKEKYRQELLEQMAEQQKNKRREKDLDLRVAASGARDPEKSPDRLKQFSVAPRHFEEMIPPERPRVAFQTPLPPLSAPPVPPAPSVYSIPSQKEDLHDGLSSTLGEMVPPRIAPLPPPPLLPPLATNYRTPYDDAYYFYGARNTLDPSLAYYGSGMMGVQPAAYVSAPVTHQPAPPIASTVGQNELKITSDRAVNSGLFFEDKPKPSKQSLQSYQEALQQQIREREERRRKEREEKEEYEAKLEAEMRSYNPWGKGGGGAPLRDTKGNLISHMQTQSSPFARGNIFGEPPTELQIKQQELYKNFLRFQIEEKKQREEAERERMRIAEEKEEKRLAEQRARIQQEYEEEQEKKREKEEEQRLKNEELIRLAEERRKEAERKKKEEEEKHNLQLQHYYERENIIGEETKRLRQPSPVVPALQNKIASKLQRPPSVDSILTSFIQESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRRQLRSEERRLQGRLLHMDSDDEVHIRKRERNPMDVFDMARHRLQAPVRRQSPKGLDAATFQNIHDFNELKDRDSETRVDLKFMYPEPPRDHHTLEIQQRALLREQQKRLNRMKMQEGVEVDLDAVSSTKVRDYRMPREDKDDFLKNSLLESDSAFIGAYGETYPAIEDDALPPPSQPPSARERRRNKLKGLDLDKSHPNVPPDGLSLKSVSSISIDQLRMRNEERMRRLNELQTKPINTDDESSLVDPDDIMKHMGDDESNSVATEPWLRPGTSETLKRFMAEQLRQEQLQVPGKPGTLTWQGLSTAHG", "length": 1169, "header": "tr|A0A286ZT63-1|A0A287ABU9_PIG Computationally mapped isoform of Centrosome and spindle pole associated protein 1 OS=Sus scrofa OX=9823 GN=CSPP1 PE=4 SV=3 CANONICAL=A0A287ABU9-1" }, "locus": { "chromosome": "4", "start_pos": 67724871, "end_pos": 67614709, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045141.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045141.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034833.3", "url": "https://www.ensembl.org/id/ENSSSCP00000034833.3" } ] } }, { "isoform_ac": "A0A287ABU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU9/entry#A0A287ABU9-1", "sequence": { "sequence": "MADNLDEFIEERKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPNSQQTRGSLGIDYGLSLPLGEDYERKKHKLKEELRQDYRRYLTQGITQAKRKKNFLSTSETDPSTLGVSLPIGERLSAKERLKLERNKEYNQFLRDKEESIENFRQIEKSTENKNQGNKKPTSQIKPDLPSQIQSSCENAEGPRKDAPTPSETYEELLNQRRLEEDRYRQLDDEIELRNRRITKKTNEEVGISSKKYPRFVSKTDIPDRRFRRFNEDRVFDKQYFSPDQDPEVSEEMDERFRYESDFDRRLLRVYTNDRMYGNRRGNVPSMEYGGDATEQSDVRISSAGNQSTRDNEPSKPTNREICSPFAGMLFGGEDRELIQRRKEKYRQELLEQMAEQQKNKRREKDLDLRVAASGARDPEKSPDRLKQFSVAPRHFEEMIPPERPRVAFQTPLPPLSAPPVPPAPSVYSIPSQKEDLHDGLSSTLGEMVPPRIAPLPPPPLLPPLATNYRTPYDDAYYFYGARNTLDPSLAYYGSGMMGVQPAAYVSAPVTHQPAPPIASTVGQNELKITSDRAVNSGLFFEDKPKPSKQSLQSYQEALQQQIREREERRRKEREEKEEYEAKLEAEMRSYNPWGKGGGGAPLRDTKGNLITDLNRMHRQNIDAYHNPDARTYEDKRAVVSLDQNLATSNAENLEDSANKNSGHMQTQSSPFARGNIFGEPPTELQIKQQELYKNFLRFQIEEKKQREEAERERMRIAEEKEEKRLAEQRARIQQEYEEEQEKKREKEEEQRLKNEELIRLAEERRKEAERKKKEEEEKHNLQLQHYYERENIIGEETKRLRQPSPVVPALQNKIASKLQRPPSVDSILTSFIQESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRRQLRSEERRLQGRLLHMDSDDEVHIRKRERNPMDVFDMARHRLQAPVRRQSPKGLDAATFQNIHDFNELKDRDSETRVDLKFMYPEPPRDHHTLEIQQRALLREQQKRLNRMKMQEGVEVDLDAVSSTKVRDYRMPREDKDDFLKNSLLESDSAFIGAYGETYPAIEDDALPPPSQPPSARERRRNKLKGLDLDKSHPNVPPDGLSLKSVSSISIDQLRMRNEERMRRLNELQTKPINTDDESSLVDPDDIMKHMGDDESNSVATEPWLRPGTSETLKRFMAEQLRQEQLQVPGKPGTLTWQGLSTAHG", "length": 1220, "header": "tr|A0A287ABU9-1|A0A287ABU9_PIG Isoform 1 of Centrosome and spindle pole associated protein 1 OS=Sus scrofa OX=9823 GN=CSPP1 PE=4 SV=1 CANONICAL=A0A287ABU9-1" }, "locus": { "chromosome": "4", "start_pos": 67724871, "end_pos": 67614709, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063543.2", "url": "https://www.ensembl.org/id/ENSSSCT00000063543.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041494.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041494.1" } ] } }, { "isoform_ac": "A0A287BQV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU9/entry#A0A287BQV1-1", "sequence": { "sequence": "MADNLDEFIEERKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPNSQQTRGSLGIDYGLSLPLGEDYERKKHKLKEELRQDYRRYLTQERLKLERNKEYNQFLRDKEESIENFRQIEKSTENKNQGNKKPTSQIKPDLPSQIQSSCENAEGPRKDAPTPSETYEELLNQRRLEEDRYRQLDDEIELRNRRITKKTNEEVGISSKKYPRFVSKTDIPDRRFRRFNEDRVFDKQYFSPDQDPEVSEEMDERFRYESDFDRRLLRVYTNDRMYGNRRGNVPSMEYGGDATEQSDVRISSAGNQSTRDNEPSKPTNREICSPFAGMLFGGEDRELIQRRKEKYRQELLEQMAEQQKNKRREKDLDLRVAASGARDPEKSPDRLKQFSVAPRHFEEMIPPERPRVAFQTPLPPLSAPPVPPAPSVYSIPSQKEDLHDGLSSTLGEMVPPRIAPLPPPPLLPPLATNYRTPYDDAYYFYGARNTLDPSLAYYGSGMMGVQPAAYVSAPVTHQPAPPIASTVGQNELKITSDRAVNSGLFFEDKPKPSKQSLQSYQEALQQQIREREERRRKEREEKEEYEAKLEAEMRSYNPWGKGGGGAPLRDTKGNLISHMQTQSSPFARGNIFGEPPTELQIKQQELYKNFLRFQIEEKKQREEAERERMRIAEEKEEKRLAEQRARIQQEYEEEQEKKREKEEEQRLKNEELIRLAEERRKEAERKKKEEEEKHNLQLQHYYERENIIGEETKRLRQPSPVVPALQNKIASKLQRPPSVDSILTSFIQESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRRQLRSEERRLQGRLLHMDSDDEVHIRKRERNPMDVFDMARHRLQAPVRRQSPKGLDAATFQNIHDFNELKDRDSETRVDLKFMYPEPPRDHHTLEIQQRALLREQQKRLNRMKMQEGVEGAYGETYPAIEDDALPPPSQPPSARERRRNKLKGLDLDKSHPNVPPDGLSLKSVSSISIDQLRMRNEERMRRLNELQTKPINTDDESSLVDPDDIMKHMGDDESNSVATEPWLRPGTSETLKRFMAEQLRQEQLQVPGKPGTLTWQGLSTAHG", "length": 1097, "header": "tr|A0A287BQV1-1|A0A287BQV1_PIG Computationally mapped isoform of Centrosome and spindle pole associated protein 1 OS=Sus scrofa OX=9823 GN=CSPP1 PE=4 SV=2 CANONICAL=A0A287ABU9-1" }, "locus": { "chromosome": "4", "start_pos": 67724871, "end_pos": 67614709, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046810.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046810.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058544.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058544.2" } ] } }, { "isoform_ac": "A0A5G2QH15-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU9/entry#A0A5G2QH15-1", "sequence": { "sequence": "MADNLDEFIEERKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPNSQQTRGSLGIDYGLSLPLGEDYERKKHKLKEELRQDYRRYLTQKNFLSTSETDPSTLGVSLPIGERLSAKERLKLERNKEYNQFLRDKEESIENFRQIEKSTENKNQGNKKPTSQIKPDLPSQIQSSCENAEGPRKDAPTPSETYEELLNQRRLEEDRYRQLDDEIELRNRRITKKTNEEVGISSKKYPRFVSKTDIPDRRFRRFNEDRVFDKQYFSPDQDPEVSEEMDERFRYESDFDRRLLRVYTNDRIAPLPPPPLLPPLATNYRTPYDDAYYFYGARNTLDPSLAYYGSGMMGVQPAAYVSAPVTHQPAPPIASTVGQNELKITSDRAVNSGLFFEDKPKPSKQSLQSYQEALQQQIREREERRRKEREEKEEYEAKLEAEMRSYNPWGKGGGGAPLRDTKGNLITDLNRMHRQNIDAYHNPDARTYEDKRAVVSLDQNLATSNAENLEDSANKNSGHMQTQSSPFARGNIFGEPPTELQIKQQELYKNFLRFQIEEKKQREEAERERMRIAEEKEEKRLAEQRARIQQEYEEEQEKKREKEEEQRLKNEELIRLAEERRKEAERKKKEEEEKHNLQLQHYYERENIIGEETKRLRQPSPVVPALQNKIASKLQRPPSVDSILTSFIQESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRRQLRSEERRLQGRLLHMDSDDEVHIRKRERNPMDVFDMARHRLQAPVRRQSPKGLDAATFQNIHDFNELKDRDSETRVDLKFMYPEPPRDHHTLEIQQRALLREQQKRLNRMKMQEGVEVDLDAVSSTKVRDYRMPREDKDDFLKNSLLESDSAFIGAYGETYPAIEDDALPPPSQPPSARERRRNKLKGLDLDKSHPNVPPDGLSLKSVSSISIDQLRMRNEERMRRLNELQTKPINTDDESSLVDPDDIMKHMGDDESNSVATEPWLRPGTSETLKRFMAEQLRQEQLQVPGKPGTLTWQGLSTAHG", "length": 1035, "header": "tr|A0A5G2QH15-1|A0A287ABU9_PIG Computationally mapped isoform of Centrosome and spindle pole associated protein 1 OS=Sus scrofa OX=9823 GN=CSPP1 PE=4 SV=2 CANONICAL=A0A287ABU9-1" }, "locus": { "chromosome": "4", "start_pos": 67724871, "end_pos": 67614709, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086373.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086373.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064073.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064073.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 206, "start_aa": "Thr", "end_pos": 206, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr206", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH15" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABU9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU9" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABU9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU9" } ], "pmid": "" }, { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABU9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPT6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWH5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARVLRAGGAASGGGFLWRAAPCSLLPGLRKLASSNNRLREESWLKSLFVRKVDPRKDAHSNLLAKKETSSLYKLQFHNVKPECLEAYNKICQEVLPKIHEDKHYPCTLVGTWNTWYGEQDQAVHLWRYEGGYPALTEVMNKLKENQEFSRFRKERSNMLLSRKNQLLLEFSFWNEPVPRSGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQDGNEAVGGFFSQIGELYMVHHLWAYKDLQTREDIRNAAWHKHGWEELVYYTVPLIQEMESRIMIPQKTSPLQ", "length": 286, "header": "tr|A0A287ABB8-1|A0A287ABB8_PIG Isoform 1 of Nipsnap homolog 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"https://www.ensembl.org/id/ENSSSCP00000041612.1" } ] } }, { "isoform_ac": "A0A287BEE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABB8/entry#A0A287BEE0-1", "sequence": { "sequence": "MAARVLRAGGAASGGGFLWRAAPCSLLPGLRKLASSNNRLREESWLKSLFVRKVDPRKDAHSNLLAKKETSSLYKLQFKRCCQRFMKINITLVLWWGLGTRGMASRIKLEFSRFRKERSNMLLSRKNQLLLEFSFWNEPVPRSGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQDGNEAVGGFFSQIGELYMVHHLWAYKDLQTREDIRNAAWHKHGWEELVYYTVPLIQEMESRIMIPQKTSPLQ", "length": 247, "header": "tr|A0A287BEE0-1|A0A287BEE0_PIG Computationally mapped isoform of Nipsnap homolog 2 OS=Sus scrofa OX=9823 GN=NIPSNAP2 PE=1 SV=1 CANONICAL=A0A287ABB8-1" }, "locus": { "chromosome": "3", "start_pos": 16941657, "end_pos": 16911684, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040553.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040553.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054462.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054462.2" } ] } }, { "isoform_ac": "A0A5G2QPT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABB8/entry#A0A5G2QPT6-1", "sequence": { "sequence": "MAARVLRAGGAASGGGFLWRAAPCSLLPGLRKLASSNNRLREESWLKSLFVRKVDPRKDAHSNLLAKKETSSLYKLQFHNVKPECLEAYNKICQEVLPKIHEDKHYPCTLVGTWNTWYGEQDQAVHLWRYEGGYPALTEVMNKLKENQEFSRFRKERSNMLLSRKNQLLLEFSFWNEPVPRSGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQDGNEAVGGFFSQIGELYMVHHLWAYKDLQTREDIRNAAWHKHGWEELPGNLHMPRVWP", "length": 272, "header": "tr|A0A5G2QPT6-1|A0A287ABB8_PIG Computationally mapped isoform of Nipsnap homolog 2 OS=Sus scrofa OX=9823 GN=NIPSNAP2 PE=1 SV=1 CANONICAL=A0A287ABB8-1" }, "locus": { "chromosome": "3", "start_pos": 16941657, "end_pos": 16912495, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070847.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070847.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060302.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060302.1" } ] } }, { "isoform_ac": "A0A5G2QWH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABB8/entry#A0A5G2QWH5-1", "sequence": { "sequence": "MAARVLRAGGAASGGGFLWRAAPCSLLPGLRKLASSNNRLREESWLKSLFVRKVDPRKDAHSNLLAKKETSSLYKLQFHNVKPECLEAYNKICQEVLPKIHEDKHYPCTLVGTWNTWYGEQDQAVHLWRYEGGYPALTEVMNKLKENQEFSRFRKERSNMLLSRKNQLLLEFSFWNEPVPRSGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQDGNEAVGGFFSQIGELYMVHHLWAYKDLQTREDIRNAAWHKHGWEELVYYTGSQARGRIRAVATSL", "length": 280, "header": "tr|A0A5G2QWH5-1|A0A287ABB8_PIG Computationally mapped isoform of Nipsnap homolog 2 OS=Sus scrofa OX=9823 GN=NIPSNAP2 PE=1 SV=1 CANONICAL=A0A287ABB8-1" }, "locus": { "chromosome": "3", "start_pos": 16941657, "end_pos": 16913071, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088006.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088006.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068500.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068500.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520953", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520953", "resource": "KEGG Pathway" }, { "id": "R-SSC-9013407", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013407", "resource": "Reactome", "description": "RHOH GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AN48-1", "protein_name": "Nipsnap homolog 2", "gene_name": "NIPSNAP2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAARVLLRWSPAGAGAVPRLPPGGSLAVRGMVSSASRPREDSWLKSLFVRKVDPRKDAHSNLLAKRETSSLYKLQIHNVKPECLEAYNKLCQEVLPKIHEEKHYPCALVGTWNTWYGEQDQAVHLWRYEGGYPALNEVMSKLRQNKEFTEFRKERGNMLLSRKNQLLLEFSFWNEPVPREGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQDSNEAVGGFFSQIGQLYMVHHLWAYKDLQTREDIRNAAWHKPGWDELVYYTVPLIQEMESRIMIPLKISPLQ", "length": 284 }, "evidence": [ { "id": "A0A287ABB8", "url": "https://omabrowser.org/oma/group/A0A287ABB8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O55126-1", "protein_name": "Protein NipSnap homolog 2", "gene_name": "Nipsnap2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAARVLLARGGLLRPAAQSAFLPGLRTVTSSSHRAREDSWLKSLFVRKVDPRKDAHSNLLAKKETSSLYKLQFHNVKPECLDAYNKICQEVLPKIHEGKQYPCTLVGTWNTWYGEQDQAVHLWRYEGGYPALTEVMNKLKENQEFVNFRKARSDMLLSRKNQLLLEFSFWNEPVPRPGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQDSNEAIGGFFSQIGQLYMVDHLWAYRDLQTREDIRNAAWHKHGWEELVYYTVPLIQEMESRIMIPLKTSPLQ", "length": 281 }, "evidence": [ { "id": "A0A287ABB8", "url": "https://omabrowser.org/oma/group/A0A287ABB8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O75323-1", "protein_name": "Protein NipSnap homolog 2", "gene_name": "NIPSNAP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAARVLRARGAAWAGGLLQRAAPCSLLPRLRTWTSSSNRSREDSWLKSLFVRKVDPRKDAHSNLLAKKETSNLYKLQFHNVKPECLEAYNKICQEVLPKIHEDKHYPCTLVGTWNTWYGEQDQAVHLWRYEGGYPALTEVMNKLRENKEFLEFRKARSDMLLSRKNQLLLEFSFWNEPVPRSGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQDGNEAVGGFFSQIGQLYMVHHLWAYRDLQTREDIRNAAWHKHGWEELVYYTVPLIQEMESRIMIPLKTSPLQ", "length": 286 }, "evidence": [ { "id": "A0A287ABB8", "url": "https://omabrowser.org/oma/group/A0A287ABB8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54I58-1", "protein_name": "Protein NipSnap homolog", "gene_name": "nipsnap", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFRNLINQSIRNYSTTTNVATKTKVYELKTYNILANNIPSFFELLGENKGSNSLGTWVTEMGSSNQVISLVEHESLDDRQMNEWNTKFQSKAAKLIEKQESLILREFPWAPFQKISNEKSNENKVWELRTYQSKPGKLGQWAIDFTTGFAERKKISEPVGVFYSEFGPLNTIVHLWPYKSFEDRFRIRDLALKNPVWVETVAKTTANLDSMESKTIIPVKL", "length": 223 }, "evidence": [ { "id": "A0A287ABB8", "url": "https://omabrowser.org/oma/group/A0A287ABB8/", 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Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZX38", "url": "https://www.uniprot.org/uniprotkb/A0A286ZX38" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABP0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABP0" } ], "pmid": "" }, { "name": "ligase activity", "id": "GO:0016874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016874", "evidence": [ { "database": 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"MEQSIDSLRVDHNDSEETKTDSQVFERLTCMDSRDPSFEQNGSPKVLPVTTPEAENSLISQNIPQPLTQTQTLSAEQFHLVDQNGQPIQYELQALGDSNAQMMIVASPSENGQVLRVIPSTQSGMTQVIIPQEQLVDVNSPRDVSEEKPSDRNLPTLRVDALGDNNRSYILHPQASLTLPKKTVTKIGDSYRGYCVSETELESVLTFHKQQTQSVWGTRQSPSPAKPATRLMWKSQYVPYDGIPFVNAGSRAVVMECQYGPRRKGFQLKKISEQESRSCQLYKATCPARIYIKKVQKFPEYRVPTDPKIDRKIIRMEQEKAFNMLKKNLVDAGGVLRWYVQLPTQQAHQYHELETSCLPLSPSPFPMSSLEEEDTAIRDENCALPSRLHPQVAHKIQELVSQGVEQVYAVRKQLRKFVERELFKPDEVPERHNLSFFPTVNDIKNHIHEVQKSLRNGDNVYNSEIIPATLQWTTDSGNILRETVTVTFAEGNSPGESISTKLGTNQTRGSLSPEPAHLLSSLSSFQPKIFTQLQGLQLQPRFMSPDGTPALISVNNHPTSSPSRLLDSVGSAIMSNNSLLLGQSHSLQTDTCLTQNNTVASTMGSLPEPDQNLVAMDQLVEVADVEDTENLEGNVHQILLGNVQAIPIQIVDSHPALIEENPEGTVSLNQVKQEPKEPALSVEAKKNLDCKKLSAT", "length": 696, "header": "tr|A0A287AEL0-1|A0A287AEL0_PIG Isoform 1 of Calcium responsive transcription factor OS=Sus scrofa OX=9823 GN=CARF PE=4 SV=3 CANONICAL=A0A287AEL0-1" }, "locus": { "chromosome": "15", "start_pos": 106462942, "end_pos": 106420152, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038096.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038096.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042414.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042414.3" } ] } }, { "isoform_ac": "A0A287BBM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEL0/entry#A0A287BBM9-1", "sequence": { "sequence": "MEQSIDSLRVDHNDSEETKTDSQRLTCMDSRDPSFEQNGSPKVLPVTTPEAENSLISQNIPQPLTQTQTLSAEQFHLVDQNGQPIQYELQALGDSNAQMMIVASPSENGQVLRVIPSTQSGMTQVIIPQEQLVDVNSPRDVSEEKPSDRNLPTLRVDALGDNNRSYILHPQASLTLPKKTVTRSLEEPLLAPLQPLSSNTPIWACRLRSCEKIGDSYRGYCVSETELESVLTFHKQQTQSVWGTRQSPSPAKPATRLMWKSQYVPYDGIPFVNAGSRAVVMECQYGPRRKGFQLKKISEQESRSCQLYKATCPARWYVQLPTQQAHQYHELETSCLPLSPSPFPMSSLEEEDTAIRDENCALPSRLHPQVAHKIQELVSQGVEQVYAVRKQLRKFVERELFKPDEVPERHNLSFFPTVNDIKNHIHEVQKSLRNGDNVYNSEIIPATLQWTTDSGNILRETVTVTFAEGNSPGESISTKLGTNQTRGSLSPEPAHLLSSLSSFQPKIFTQLQGLQLQPRFMSPDGTPALISVNNHPTSSPSRLLDSVGSAIMSNNSLLLGQSHSLQTDTCLTQNNTVASTMGSLPEPDQNLVAMDQLVEVADVEDTENLEGNVHQILLGNVQAIPIQIVDSHPALIEENPEGTVSLNQVKQEPKEPALSV", "length": 660, "header": "tr|A0A287BBM9-1|A0A287BBM9_PIG Computationally mapped isoform of Calcium responsive transcription factor OS=Sus scrofa OX=9823 GN=CARF PE=4 SV=3 CANONICAL=A0A287AEL0-1" }, "locus": { "chromosome": "15", "start_pos": 106462900, "end_pos": 106420152, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050182.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050182.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053940.3", "url": "https://www.ensembl.org/id/ENSSSCP00000053940.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 548, "start_aa": "Thr", "end_pos": 548, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr548", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZY06", "url": "https://www.uniprot.org/uniprotkb/A0A286ZY06" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": 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"glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKRD28", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9", "locus": { "chromosome": "13", "start_pos": 2922853, "end_pos": 3135709, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011194", "url": "https://www.ensembl.org/id/ENSSSCG00000011194" } ] } } ], "crossref": [ { "id": "A0A287ADP9", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ADP9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011194", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011194", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152333", "url": "https://www.ncbi.nlm.nih.gov/gene/100152333", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051165", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051165", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A287BAC0", "url": "https://www.orthodb.org/?gene=A0A287BAC0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R4Q4", "url": "https://www.orthodb.org/?gene=A0A5G2R4Q4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24123", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24123", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24123:SF75", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24123:SF75", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24178", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24178", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198:SF192", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198:SF192", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-171319", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171319", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020923866", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923866", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZYC9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZYC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYC9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADP9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BAC0", "url": "https://www.uniprot.org/uniprotkb/A0A287BAC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BAC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BAC0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4Q4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4Q4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4Q4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4Q4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RS81", "url": "https://www.uniprot.org/uniprotkb/F1RS81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RS81-1", "url": "https://www.uniprot.org/uniprotkb/F1RS81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFLKLRDQPSLVQAIFNGDPDEVRALIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDSKWLTPLHRAVASCSEEAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVAHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTHGALCLELLVSNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQCLFALVGSGASVNDLDERGCTPLHYAATSDTDGKCLEYLLRNDANPGIRDKQGYNAVHYSAAYGHRLCLQLIASETPLDVLMETSGTDMLSDSDNRATISPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYILKRTPIHAAATNGHSECLRLLIGNAEPQNAVDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCLFRDSKGRTPIHLSAACGHIGVLGALLQSAASVDANPALVDNHGYTALHWACYNGHETCVELLLEQEVFQKMEGNAFSPLHCAVINDNEGAAEMLIDTLGASIVNATDSKGRTPLHAAAFTDHVECLQLLLSHNAHVNSVDSSGKTPLMMAAENGQTNTVEMLVSSASADLTLQDNSKNTALHLACSKGHETSALLILEKITDRNLINATNAALQTPLHVAARNGLTMVVQELLGKGASVLAVDENGYTPALACAPNKDVADCLALILATMMPVSSSSPLSSLTFSAINRYTNTSKTVSFEALPIMRNEPSSYCSFNNIGGEQEYLYTEVDELNDSDSETY", "length": 1053, "header": "tr|A0A287ADP9-1|A0A287ADP9_PIG Isoform 1 of Ankyrin repeat domain 28 OS=Sus scrofa OX=9823 GN=ANKRD28 PE=1 SV=3 CANONICAL=A0A287ADP9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZYC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9/entry#A0A286ZYC9-1", "sequence": { "sequence": "MMVFLHLKTMKRELHCMLLPILEMQKSLNCLFYLEAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVAHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTHGALCLELLVSNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQCLFALVGSGASVNDLDERGCTPLHYAATSDTDGKCLEYLLRNDANPGIRDKQGYNAVHYSAAYGHRLCLQLIASETPLDVLMETSGTDMLSDSDNRATISPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYILKRTPIHAAATNGHSEFLIFFKLFLVSLTPLMLSVLNGHTDCVYSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCLFRDSKGRTPIHLSAACGHIGVLGALLQSAASVDANPALVDNHGYTALHWACYNGHETCVELLLEQEVFQKMEGNAFSPLHCAVINDNEGAAEMLIDTLGASIVNATDSKGRTPLHAAAFTDHVECLQLLLSHNAHVNSVDSSGKTPLMMAAENGQTNTVEMLVSSASADLTLQDNSKNTALHLACSKGHETSALLILEKITDRNLINATNAALQTPLHVAARNGLTMVVQELLGKGASVLAVDENGYTPALACAPNKDVADCLALILATMMPVSSSSPLSSLTFSAINRYTNTSKTVSFEALPIMRNEPSSYCSFNNIGGEQEYLYTEVDELNDSDSETY", "length": 989, "header": "tr|A0A286ZYC9-1|A0A287ADP9_PIG Computationally mapped isoform of Ankyrin repeat domain 28 OS=Sus scrofa OX=9823 GN=ANKRD28 PE=1 SV=1 CANONICAL=A0A287ADP9-1" }, "locus": { "chromosome": "13", "start_pos": 3008934, "end_pos": 2925877, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043002.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043002.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036463.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036463.2" } ] } }, { "isoform_ac": "A0A287ADP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9/entry#A0A287ADP9-1", "sequence": { "sequence": "MAFLKLRDQPSLVQAIFNGDPDEVRALIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDSKWLTPLHRAVASCSEEAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVAHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTHGALCLELLVSNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQCLFALVGSGASVNDLDERGCTPLHYAATSDTDGKCLEYLLRNDANPGIRDKQGYNAVHYSAAYGHRLCLQLIASETPLDVLMETSGTDMLSDSDNRATISPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYILKRTPIHAAATNGHSECLRLLIGNAEPQNAVDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCLFRDSKGRTPIHLSAACGHIGVLGALLQSAASVDANPALVDNHGYTALHWACYNGHETCVELLLEQEVFQKMEGNAFSPLHCAVINDNEGAAEMLIDTLGASIVNATDSKGRTPLHAAAFTDHVECLQLLLSHNAHVNSVDSSGKTPLMMAAENGQTNTVEMLVSSASADLTLQDNSKNTALHLACSKGHETSALLILEKITDRNLINATNAALQTPLHVAARNGLTMVVQELLGKGASVLAVDENGYTPALACAPNKDVADCLALILATMMPVSSSSPLSSLTFSAINRYTNTSKTVSFEALPIMRNEPSSYCSFNNIGGEQEYLYTEVDELNDSDSETY", "length": 1053, "header": "tr|A0A287ADP9-1|A0A287ADP9_PIG Isoform 1 of Ankyrin repeat domain 28 OS=Sus scrofa OX=9823 GN=ANKRD28 PE=1 SV=3 CANONICAL=A0A287ADP9-1" }, "locus": { "chromosome": "13", "start_pos": 3135447, "end_pos": 2925877, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040406.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040406.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041931.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041931.3" } ] } }, { "isoform_ac": "A0A287BAC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9/entry#A0A287BAC0-1", "sequence": { "sequence": "MSRVCIVVLEEVEDEPPAFISKLPQENKSLHSSPSGNVLPSLVQAIFNGDPDEVRALIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDSKWLTPLHRAVASCSEEAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVAHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTHGALCLELLVSNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQCLFALVGSGASVNDLDERGCTPLHYAATSDTDGKCLEYLLRNDANPGIRDKQGYNAVHYSAAYGHRLCLQLIASETPLDVLMETSGTDMLSDSDNRATISPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYILKRTPIHAAATNGHSECLRLLIGNAEPQNAVDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCLFRDSKGRTPIHLSAACGHIGVLGALLQSAASVDANPALVDNHGYTALHWACYNGHETCVELLLEQEVFQKMEGNAFSPLHCAVINDNEGAAEMLIDTLGASIVNATDSKGRTPLHAAAFTDHVECLQLLLSHNAHVNSVDSSGKTPLMMAAENGQTNTVEMLVSSASADLTLQDNSKNTALHLACSKGHETSALLILEKITDRNLINATNAALQTPLHVAARNGLTMVVQELLGKGASVLAVDENGYTPALACAPNKDVADCLALILATMMPVSSSSPLSSLTFSAINRYTNTSKTVSFEALPIMRNEPSSYCSFNNIGGEQEYLYTEVDELNDSDSETY", "length": 1083, "header": "tr|A0A287BAC0-1|A0A287BAC0_PIG Computationally mapped isoform of Ankyrin repeat domain 28 OS=Sus scrofa OX=9823 GN=ANKRD28 PE=1 SV=1 CANONICAL=A0A287ADP9-1" }, "locus": { "chromosome": "13", "start_pos": 3057492, "end_pos": 2925877, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062689.2", "url": "https://www.ensembl.org/id/ENSSSCT00000062689.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053033.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053033.1" } ] } }, { "isoform_ac": "A0A5G2QFT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9/entry#A0A5G2QFT5-1", "sequence": { "sequence": "MSRVCIVVLEEVEDEPPAFISKLPQENKSLHSSPSGNVLPSLVQAIFNGDPDEVRALIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDSKWLTPLHRAVASCSEEAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVAHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTHGALCLELLVSNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQCLFALVGSGASVNDLDERGCTPLHYAATSDTDGKCLEYLLRNDANPGIRDKQGYNAVHYSAAYGHRLCLQLIASETPLDVLMETSGTDMLSDSDNRATISPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYILKRTPIHAAVLIFFKLFLVSLTPLMLSVLNGHTDCVYSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCLFRDSKGRTPIHLSAACGHIGVLGALLQSAASVDANPALVDNHGYTALHWACYNGHETCVELLLEQEVFQKMEGNAFSPLHCAVINDNEGAAEMLIDTLGASIVNATDSKGRTPLHAAAFTDHVECLQLLLSHNAHVNSVDSSGKTPLMMAAENGQTNTVEMLVSSASADLTLQDNSKNTALHLACSKGHETSALLILEKITDRNLINATNAALQTPLHVAARNGLTMVVQELLGKGASVLAVDENGYTPALACAPNKDVADCLALILATMMPVSSSSPLSSLTFSAINRYTNTSKTVSFEALPIMRNEPSSYCSFNNIGGEQEYLYTEVDELNDSDSETY", "length": 1065, "header": "tr|A0A5G2QFT5-1|A0A287ADP9_PIG Computationally mapped isoform of Ankyrin repeat domain 28 OS=Sus scrofa OX=9823 GN=ANKRD28 PE=1 SV=2 CANONICAL=A0A287ADP9-1" }, "locus": { "chromosome": "13", "start_pos": 3057492, "end_pos": 2925877, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083470.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083470.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063597.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063597.2" } ] } }, { "isoform_ac": "A0A5G2R4Q4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9/entry#A0A5G2R4Q4-1", "sequence": { "sequence": "MSRVCIVVLEEVEDEPPAFISKLPQENKSLHSSPSGNVLPSLVQAIFNGDPDEVRALIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSANFGALCGTEVWSPSRRSHEMSSGTWISGARVNAKDSKWLTPLHRAVASCSEEAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVAHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTHGALCLELLVSNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQCLFALVGSGASVNDLDERGCTPLHYAATSDTDGKCLEYLLRNDANPGIRDKQGYNAVHYSAAYGHRLCLQLIASETPLDVLMETSGTDMLSDSDNRATISPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYILKRTPIHAAATNGHSECLRLLIGNAEPQNAVDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCLFRDSKGRTPIHLSAACGHIGVLGALLQSAASVDANPALVDNHGYTALHWACYNGHETCVELLLEQEVFQKMEGNAFSPLHCAVINDNEGAAEMLIDTLGASIVNATDSKGRTPLHAAAFTDHVECLQLLLSHNAHVNSVDSSGKTPLMMAAENGQTNTVEMLVSSASADLTLQDNSKNTALHLACSKGHETSALLILEKITDRNLINATNAALQTPLHVAARNGLTMVVQELLGKGASVLAVDENGYTPALACAPNKDVADCLALILATMMPVSSSSPLSSLTFSAINRYTNTSKTVSFEALPIMRNEPSSYCSFNNIGGEQEYLYTEVDELNDSDSETY", "length": 1111, "header": "tr|A0A5G2R4Q4-1|A0A287ADP9_PIG Computationally mapped isoform of Ankyrin repeat domain 28 OS=Sus scrofa OX=9823 GN=ANKRD28 PE=1 SV=1 CANONICAL=A0A287ADP9-1" }, "locus": { "chromosome": "13", "start_pos": 3057492, "end_pos": 2925877, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085216.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085216.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072193.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072193.1" } ] } }, { "isoform_ac": "F1RS81-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9/entry#F1RS81-1", "sequence": { "sequence": "MSRVCIVVLEEVEDEPPAFISKLPQENKSLHSSPSGNVLPSLVQAIFNGDPDEVRALIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSANFGALCGTEVWSPSRRSHEMSSGTWISGARVNAKDSKWLTPLHRAVASCSEEAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVAHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTHGALCLELLVSNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQCLFALVGSGASVNDLDERGCTPLHYAATSDTDGKCLEYLLRNDANPGIRDKQGYNAVHYSAAYGHRLCLQLIASETPLDVLMETSGTDMLSDSDNRATISPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYILKRTPIHAAATNGHSEFLIFFKLFLVSLTPLMLSVLNGHTDCVYSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCLFRDSKGRTPIHLSAACGHIGVLGALLQSAASVDANPALVDNHGYTALHWACYNGHETCVELLLEQEVFQKMEGNAFSPLHCAVINDNEGAAEMLIDTLGASIVNATDSKGRTPLHAAAFTDHVECLQLLLSHNAHVNSVDSSGKTPLMMAAENGQTNTVEMLVSSASADLTLQDNSKNTALHLACSKGHETSALLILEKITDRNLINATNAALQTPLHVAARNGLTMVVQELLGKGASVLAVDENGYTPALACAPNKDVADCLALILATMMPVSSSSPLSSLTFSAINRYTNTSKTVSFEALPIMRNEPSSYCSFNNIGGEQEYLYTEVDELNDSDSETY", "length": 1100, "header": "tr|F1RS81-1|A0A287ADP9_PIG Computationally mapped isoform of Ankyrin repeat domain 28 OS=Sus scrofa OX=9823 GN=ANKRD28 PE=1 SV=4 CANONICAL=A0A287ADP9-1" }, "locus": { "chromosome": "13", "start_pos": 3057492, "end_pos": 2925877, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012259.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012259.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011944.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011944.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-171319", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171319", "resource": "Reactome", "description": "Telomere Extension By Telomerase" }, { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADP9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADP9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9" } ], "pmid": "" }, { "name": "protein serine/threonine phosphatase complex", "id": "GO:0008287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008287", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADP9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADP9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of focal adhesion assembly", "id": "GO:0051894", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051894", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADP9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1005, "end_pos": 1007, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1046, "end_pos": 1048, "annotation": "n_glycosylation_sequon" }, { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 580, "end_pos": 582, "annotation": "n_glycosylation_sequon" }, { "start_pos": 817, "end_pos": 819, "annotation": "n_glycosylation_sequon" }, { "start_pos": 920, "end_pos": 922, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"Protein Classification" ] }, { "id": "IPR006018", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006018", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TRIDDKM", "url": "https://omabrowser.org/oma/group/TRIDDKM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR18949", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18949", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18949:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18949:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02029", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02029", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A0K0", "url": "https://www.uniprot.org/uniprotkb/A0A287A0K0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A0K0-1", "url": 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"MAEAPSHPDSEEQQELLVEEGSGLAAQWSLEDEEEAARERRRRERDRQLQGQDEDEGGPGPEQQEQEKLLKPPDAPELDEDEGFGDWSQKPEQRRQPWGPGETSDSGDPLQGESPEGEQEEDSWPPDSRGHCSSSVDPPAPDRPPCPPHLPGHASPPPRLNGPSVCLLLARTPAHLGWPGQHVCGSPARVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETEEGDVQPQRCQQPRTPSPSVLEGTAPGSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQSAAKPPSCKDIVAGDMSKKSLWEQKGGPKTSSTVKSTPSGKRYKFVAAGHGKYEKVLVDEGSVP", "length": 408, "header": "tr|A0A287AFG3-1|A0A287AFG3_PIG Isoform 1 of Lymphocyte specific protein 1 OS=Sus scrofa OX=9823 GN=LSP1 PE=4 SV=3 CANONICAL=A0A287AFG3-1" }, "isoforms": [ { "isoform_ac": "A0A287A0K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFG3/entry#A0A287A0K0-1", "sequence": { "sequence": "MAEAPSHPDSEEQQELLVEEGSGLAAQWSLEDEEEAARERRRRERDRQLQGQDEDEGGPGPEQQEQEKLLKPPDAPELDEDEGFGDWSQKPEQRRQPWGPGETSDSGDPLQGESPEGEQEEDRPGQHVCGSPARVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETEEGDVQPQRCQQPRTPSPSVLEGTAPGSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQSAAKPPSCKDIVAGDMSKKSLWEQKGGPKTSSTVKSTPSGKRYKFVAAGHGKYEKVLVDEGSVP", "length": 353, "header": "tr|A0A287A0K0-1|A0A287AFG3_PIG Computationally mapped isoform of Lymphocyte specific protein 1 OS=Sus scrofa OX=9823 GN=LSP1 PE=4 SV=3 CANONICAL=A0A287AFG3-1" }, "locus": { "chromosome": "2", "start_pos": 1291444, "end_pos": 1262114, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059336.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059336.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037459.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037459.3" } ] } }, { "isoform_ac": "A0A287AFG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFG3/entry#A0A287AFG3-1", "sequence": { "sequence": "MAEAPSHPDSEEQQELLVEEGSGLAAQWSLEDEEEAARERRRRERDRQLQGQDEDEGGPGPEQQEQEKLLKPPDAPELDEDEGFGDWSQKPEQRRQPWGPGETSDSGDPLQGESPEGEQEEDSWPPDSRGHCSSSVDPPAPDRPPCPPHLPGHASPPPRLNGPSVCLLLARTPAHLGWPGQHVCGSPARVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETEEGDVQPQRCQQPRTPSPSVLEGTAPGSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQSAAKPPSCKDIVAGDMSKKSLWEQKGGPKTSSTVKSTPSGKRYKFVAAGHGKYEKVLVDEGSVP", "length": 408, "header": "tr|A0A287AFG3-1|A0A287AFG3_PIG Isoform 1 of Lymphocyte specific protein 1 OS=Sus scrofa OX=9823 GN=LSP1 PE=4 SV=3 CANONICAL=A0A287AFG3-1" }, "locus": { "chromosome": "2", "start_pos": 1291444, "end_pos": 1262114, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066164.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066164.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042722.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042722.3" } ] } }, { "isoform_ac": "A0A287BI62-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFG3/entry#A0A287BI62-1", "sequence": { "sequence": "MMSSPALLRRNSSKQGLESLLRLAAQWSLEDEEEAARERRRRERDRQLQGQDEDEGGPGPEQQEQEKLLKPPDAPELDEDEGFGDWSQKPEQRRQPWGPGETSDSGDPLQGESPEGEQEEDRPGQHVCGSPARVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETEEGDVQPQRCQQPRTPSPSVLEGTAPGSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQSAAKPPSCKDIVAGDMSKKSLWEQKGGPKTSSTVKSTPSGKRYKFVAAGHGKYEKVLVDEGSVP", "length": 352, "header": "tr|A0A287BI62-1|A0A287BI62_PIG Computationally mapped isoform of Lymphocyte specific protein 1 OS=Sus scrofa OX=9823 GN=LSP1 PE=4 SV=1 CANONICAL=A0A287AFG3-1" }, "locus": { "chromosome": "2", "start_pos": 1291444, "end_pos": 1272965, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052917.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052917.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056290.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056290.1" } ] } }, { "isoform_ac": "A0A5G2QJZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFG3/entry#A0A5G2QJZ4-1", "sequence": { "sequence": "MAEAPSHPDSEEQQELLVEEGSGLAAQWSLEDEEEAARERRRRERDRQLQGQDEDEGGPGPEQQEQEKLLKPPDAPELDEDEGFGDWSQKPEQRRQPWGPGETSDSGDPLQGESPEGEQEEDRPGQHVCGSPARVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETEEGDVQPQRCQQPRTPSPSVLEGTAPGSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQSAAKPPSCKDIVAGDMSKKSLWEQKGGPKTSSTVKLSGDRWYHGQAGGTTSLRIHAPRSGAGQTPPALLCCFSQPAQSTHATHRQPPPRPPLAPGLPASPSRSAGKEGTLTAGR", "length": 403, "header": "tr|A0A5G2QJZ4-1|A0A287AFG3_PIG Computationally mapped isoform of Lymphocyte specific protein 1 OS=Sus scrofa OX=9823 GN=LSP1 PE=4 SV=1 CANONICAL=A0A287AFG3-1" }, "locus": { "chromosome": "2", "start_pos": 1295519, "end_pos": 1262114, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078485.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078485.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065121.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065121.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJZ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LKQ8-1", "protein_name": "Lymphocyte-specific protein 1", "gene_name": "Lsp1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNGPALLRRNASKRGLEKLLRLTTQWREEDKEEAAREQRQRERERQLQDQDQDKVEDEGDHSLEQPEQQALLSLKSSELDEDEGFGDWSQKMEQRQQCWENEGTAEGTEPSQNESPEETQAEDRSQQVKVHLEELNLSQEEPSPEDTVGSCEEAEENLASHQARTPSPLALEETVEPSSPPLSPTTTLADRTESLNRSIKKSNSVKKSQPTLPISTIDERLQQYTQATESAGRTPKLSRQPSIELPSMAVASTKTRWETGEVQTQSASKTPSCQDIVAGDMSKKSLWEQKGSSKISSTIKSTPSGKRYKFVATGHGKYEKVLVDEGSAP", "length": 329 }, "evidence": [ { "id": "A0A287AFG3", "url": "https://omabrowser.org/oma/group/A0A287AFG3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I5ZYW3-1", "protein_name": "Lymphocyte-specific protein 1", "gene_name": "Lsp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "WRPRSRGWGSPTLAGRVAGGRHPHGPGGLSARACPAWSLAELAAGGTGTKWPSPLGRVSGPEPRGLRFRFQSQPVRQSWVDQTASSNQGAKAPRDSPTLCFCRSQEGTPRDSWDPWDSCRGTVPRDTATGPEHLAREQCQDGAPRSVEDRLTTQWREEDEEEAAREQRQRERERQLQDQDKDEEDEGGHFLEQPGQQALVSLKSSELDEDEGFGDWSQKQEPPRQQSWENEGTAEGSEPSPSESAEEKQTEDSSHQAKVHLEESNLSHSDPNIEDDVGGSGETEEHLISHQARTPSPLALEDTAELSSPPLSPTVKLADRTESLNRSIQKSNSVKKSQPTLPISTIDERLQQYTQATESAGRTPKLSRQPSIELPSMAVASTKTLWETGEVQTQSASKTPSCQDIVAGDMSKKSLWEQKGGSKISSTIKSTPSGKRYKFVATGHGKYEKVLVDEGSAP", "length": 458 }, "evidence": [ { "id": "A0A287AFG3", "url": "https://omabrowser.org/oma/group/A0A287AFG3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P19973-1", "protein_name": "Lymphocyte-specific protein 1", "gene_name": "Lsp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEAAIDPRCEEQEELHAEDSEGLTTQWREEDEEEAAREQRQRERERQLQDQDKDKEDDGGHSLEQPGQQTLISLKSSELDEDEGFGDWSQKPEPRQQFWGNEGTAEGTEPSQSERPEEKQTEESSHQAKVHLEESNLSYREPDPEDAVGGSGEAEEHLIRHQVRTPSPLALEDTVELSSPPLSPTTKLADRTESLNRSIKKSNSVKKSQPTLPISTIDERLQQYTQATESSGRTPKLSRQPSIELPSMAVASTKTLWETGEVQSQSASKTPSCQDIVAGDMSKKSLWEQKGGSKISSTIKSTPSGKRYKFVATGHGKYEKVLVDEGSAP", "length": 330 }, "evidence": [ { "id": "A0A287AFG3", "url": "https://omabrowser.org/oma/group/A0A287AFG3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P33241-1", "protein_name": "Lymphocyte-specific protein 1", "gene_name": "LSP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEASSDPGAEEREELLGPTAQWSVEDEEEAVHEQCQHERDRQLQAQDEEGGGHVPERPKQEMLLSLKPSEAPELDEDEGFGDWSQRPEQRQQHEGAQGALDSGEPPQCRSPEGEQEDRPGLHAYEKEDSDEVHLEELSLSKEGPGPEDTVQDNLGAAGAEEEQEEHQKCQQPRTPSPLVLEGTIEQSSPPLSPTTKLIDRTESLNRSIEKSNSVKKSQPDLPISKIDQWLEQYTQAIETAGRTPKLARQASIELPSMAVASTKSRWETGEVQAQSAAKTPSCKDIVAGDMSKKSLWEQKGGSKTSSTIKSTPSGKRYKFVATGHGKYEKVLVEGGPAP", "length": 339 }, "evidence": [ { "id": "A0A287AFG3", "url": "https://omabrowser.org/oma/group/A0A287AFG3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFG3", "url": "https://www.uniprot.org/uniprotkb/A0A287AFG3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFG3", "url": "https://www.uniprot.org/uniprotkb/A0A287AFG3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AFG3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 408, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AFG3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AFG3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ADE2-1", "uniprot_ac": "A0A287ADE2", "uniprot_id": "A0A287ADE2_PIG", "mass": { "chemical_mass": 69762.0, "monoisotopic_mass": 69762.0 }, "refseq": {}, "gene_names": [ { "name": "DMWD", "type": "recommended", "evidence": [ { "id": "A0A287ADE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE2" } ] } ], "protein_names": [ { "name": "DM1 locus, WD repeat containing", "type": "synonym", "evidence": [ { "id": "A0A287ADE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ADE2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DMWD", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE2", "locus": { "chromosome": "6", "start_pos": 52110734, "end_pos": 52117740, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038738", "url": "https://www.ensembl.org/id/ENSSSCG00000038738" } ] } } ], "crossref": [ { "id": "A0A287ADE2", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ADE2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038738", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038738", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14107", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14107", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14107:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14107:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A353", "url": "https://www.uniprot.org/uniprotkb/A0A287A353", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A353-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A353-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADE2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASGTEGSSGPGAVMGDCAEIKSQFRTREGFYKLLPGDGAARRSGPASVQTPAPPQPPQPPPGPASGSGPGATGSAPSPPPSGPGPGPALPAVRLSLVRLGEPDVGEPPATPAGLGAGGDRVCFNLGRELYFYPGCCRRGSQRSIDLNKPIDKRIYKGTQPTCHDFNQFTAATETISLLVGFSAGQVQYLDLIKKDTSKLFNEERLIDKTKVTYLKWLPESESLFLASHASGHLYLYNVSHPCASAPPQYSLLKQGEGFAVYAAKSKAPRNPLAKWAVGEGPLNEFAFSPDGRHLACVSQDGCLRVFHFDSMLLRGLMKSYFGGLLCVCWSPDGRYVVTGGEDDLVTVWSFTEGRVVARGHGHKSWVNAVAFDPYTTRAEEATAAGGDGERSGEEEEEPEAAGPGGGAPLSPLPKAGSITYRFGSAGQDTQFCLWDLTEDVLYPHPPLARTRTLPGTPGTTPPAASGSRAGEPGPGPLPRSLSRSNSLPHPAGSGKAGGPGTAAEPGTPFSIGRFATLTLQERRDRGAEKEHKRYHSLGNISRGGGGGGGGDKPSGPAPRSRLDPAKVLGTALCPRIHEVPLLEPLVCKKIAQERLTVLLFLEDCIITACQEGLICTWARPGKAFTDEETEAQTGEGSWPRSPSKSVVEGISSQPGNSPSGTVV", "length": 665, "header": "tr|A0A287ADE2-1|A0A287ADE2_PIG Isoform 1 of DM1 locus, WD repeat containing OS=Sus scrofa OX=9823 GN=DMWD PE=4 SV=1 CANONICAL=A0A287ADE2-1" }, "isoforms": [ { "isoform_ac": "A0A287A353-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE2/entry#A0A287A353-1", "sequence": { "sequence": "MAASGTEGSSGPGAVMGDCAEIKSQFRTREGFYKLLPGDGAARRSGPASVQTPAPPQPPQPPPGPASGSGPGATGSAPSPPPSGPGPGPALPAVRLSLVRLGEPDVGEPPATPAGLGAGGDRVCFNLGRELYFYPGCCRRGSQRSIDLNKPIDKRIYKGTQPTCHDFNQFTAATETISLLVGFSAGQVQYLDLIKKDTSKLFNEERLIDKTKVTYLKWLPESESLFLASHASGHLYLYNVSHPCASAPPQYSLLKQGEGFAVYAAKSKAPRNPLAKWAVGEGPLNEFAFSPDGRHLACVSQDGCLRVFHFDSMLLRGLMKSYFGGLLCVCWSPDGRYVVTGGEDDLVTVWSFTEGRVVARGHGHKSWVNAVAFDPYTTRAEEATAAGGDGERSGEEEEEPEAAGPGGGAPLSPLPKAGSITYRFGSAGQDTQFCLWDLTEDVLYPHPPLARTRTLPGTPGTTPPAASGSRAGEPGPGPLPRSLSRSNSLPHPAGSGKAGGPGTAAEPGTPFSIGRFATLTLQERRDRGAEKEHKRYHSLGNISRGGGGGGGGDKPSGPAPRSRLDPAKVLGTALCPRIHEVPLLEPLVCKKIAQERLTVLLFLEDCIITACQEGLICTWARPGKAGISSQPGNSPSGTVV", "length": 640, "header": "tr|A0A287A353-1|A0A287ADE2_PIG Computationally mapped isoform of DM1 locus, WD repeat containing OS=Sus scrofa OX=9823 GN=DMWD PE=4 SV=2 CANONICAL=A0A287ADE2-1" }, "locus": { "chromosome": "6", "start_pos": 52117740, "end_pos": 52111738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054473.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054473.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038388.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038388.2" } ] } }, { "isoform_ac": "A0A287ADE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE2/entry#A0A287ADE2-1", "sequence": { "sequence": "MAASGTEGSSGPGAVMGDCAEIKSQFRTREGFYKLLPGDGAARRSGPASVQTPAPPQPPQPPPGPASGSGPGATGSAPSPPPSGPGPGPALPAVRLSLVRLGEPDVGEPPATPAGLGAGGDRVCFNLGRELYFYPGCCRRGSQRSIDLNKPIDKRIYKGTQPTCHDFNQFTAATETISLLVGFSAGQVQYLDLIKKDTSKLFNEERLIDKTKVTYLKWLPESESLFLASHASGHLYLYNVSHPCASAPPQYSLLKQGEGFAVYAAKSKAPRNPLAKWAVGEGPLNEFAFSPDGRHLACVSQDGCLRVFHFDSMLLRGLMKSYFGGLLCVCWSPDGRYVVTGGEDDLVTVWSFTEGRVVARGHGHKSWVNAVAFDPYTTRAEEATAAGGDGERSGEEEEEPEAAGPGGGAPLSPLPKAGSITYRFGSAGQDTQFCLWDLTEDVLYPHPPLARTRTLPGTPGTTPPAASGSRAGEPGPGPLPRSLSRSNSLPHPAGSGKAGGPGTAAEPGTPFSIGRFATLTLQERRDRGAEKEHKRYHSLGNISRGGGGGGGGDKPSGPAPRSRLDPAKVLGTALCPRIHEVPLLEPLVCKKIAQERLTVLLFLEDCIITACQEGLICTWARPGKAFTDEETEAQTGEGSWPRSPSKSVVEGISSQPGNSPSGTVV", "length": 665, "header": "tr|A0A287ADE2-1|A0A287ADE2_PIG Isoform 1 of DM1 locus, WD repeat containing OS=Sus scrofa OX=9823 GN=DMWD PE=4 SV=1 CANONICAL=A0A287ADE2-1" }, "locus": { "chromosome": "6", "start_pos": 52117740, "end_pos": 52111738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045206.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045206.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041993.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041993.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 112, "start_aa": "Thr", "end_pos": 112, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr112", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A353", "url": "https://www.uniprot.org/uniprotkb/A0A287A353" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": 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"MASEDNNVPSPPPTGDDEGGGGKEETPAEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETIFNLLVGGQFDLEMNFIIQEGESIICMVDLLEKCDVTCQAEVWSMFTAILKKSIRNLQICTEVGLVEKVLGQIEKADSMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGQWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIITSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMAAVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLFAQLDYKQYLSDEVDLTICSTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKAHVSRAVLELCLAFSKYLSNLHNGMPLLKQLCDHILLNPAIWIHTPAKVQMTLYTYLSTEFIGTVNIYNAIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEMLSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMAEHPNSMIPAFDERNGLRVMYKLMASTSEGIRVQALKAMGYFLKHLAPKRKAEIMLGHGLFSLLAERLMLQTNLITMTTYNVLFEILIEQICTQVIHKQHPDPDSSVKIQNPQILKVIATLLRNSPQCPESIEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKNSDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLASVFREHQGKVDEEIGPCSSSPDQAVSGISGDVNVGSQQSDTKDSPVPSHITRNSDEKSSLEKTSSVESASSAELQTCGTSNEERKTGQNNQEFLDEVPLEETLTNETINAGSLEVSSDMTEAMAISSNSFKTTDKDVMTVSEVTASINSPSEEDSSEVPEVLDKSMVEEEDDDDYVELKVESSPSEEASPSTELQDNSLSTAASEASERLDMFNNEHKLVFQEEEPASKKQTDAETHDPKDSGILTMTASGSSATSPGTPASQATGPSDIGQVLKEGEETTSFAGETKVISDSHGDIFESPTTSEQRIARLDVSSVATDTERLELKASTNMEAPQPHQPVLEMSRQQEQPGRGTAPDAVNGQRRDSRSMFRIPEFRWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDSMIMACGGILPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKNMSSGGILRQCLRLVCAVAVRNCLECQQHSQLKNKGDTGKGQKTTHSLISMGKSGAKSPVDIITGGISPVRDFDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERPGQSFKERGSESENLSVPDVESSSAALSPLTPPSVEESESTSSARRRDSGIGEETATGSGSNVDITPPVASPSVSAGPDAISEVLCTLSLEVNKSQESKNDGGHESDNKAAASVSVSKNVNVKDILRSLVNIPADGVTVDPALLPPTCLGVLGDLSVEQPVQFRSFDRSVIIATKKSTVLPSTLTTSIPTNAVSVVSSVDSAQASDAGRESPGGRSSSAKLPAVPAVGSVPQDQVSNMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREDEKMCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSTVSRPREFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHAADEDILAKGKQSIKSHALGNQNLENEILLEGDDDTLSSVEEKDLENLTGPVSLSTPAQLVAPSAVVKGTLSVTSSELYFEVDEEDPNFRKMDPKILAYTEGLHGKWLFTEIRSVFSRRYLLQNTALEIFMANRVAVMFNFPDSATVKKVVNYLPRVGIGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAIPAVITVTANRLFAVNKWHNLPASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILICGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLTRSESYIGGNCYILSGSRDATLLLWYWNGKSSGIGDNPGSETTTPRAILTGHDYEVTCAAVCAELGLVLSGSKEGPCLIHSMNGDLLRTLEGPENCLRPKLIQASREGHCVIFYENGFFCTFSVNGKLQATMETDDNIRAIQLSRDGQYLLTGGDNGVVMVWQVSDLKQLFAYPGCDAGIRAMALSHDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY", "length": 2834, "header": "tr|A0A287AAK0-1|A0A287AAK0_PIG Isoform 1 of Neurobeachin OS=Sus scrofa OX=9823 GN=LRBA PE=1 SV=1 CANONICAL=A0A287AAK0-1" }, "isoforms": [ { "isoform_ac": "A0A287A3N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0/entry#A0A287A3N7-1", "sequence": { "sequence": "MASEDNNVPSPPPTGDDEGGGGKEETPAEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETIFNLLVGGQFDLEMNFIIQEGESIICMVDLLEKCDVTCQAEVWSMFTAILKKSIRNLQICTEVGLVEKVLGQIEKADSMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGQWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIITSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMAAVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLFAQLDYKQYLSDEVDLTICSTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKAHVSRAVLELCLAFSKYLSNLHNGMPLLKQLCDHILLNPAIWIHTPAKVQMTLYTYLSTEFIGTVNIYNAIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEMLSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMAEHPNSMIPAFDERNGLRVMYKLMASTSEGIRVQALKAMGYFLKHLAPKRKAEIMLGHGLFSLLAERLMLQTNLITMTTYNVLFEILIEQICTQVIHKQHPDPDSSVKIQNPQILKVIATLLRNSPQCPESIEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKNSDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLASVFREHQGKVDEEIGPCSSSPDQAVSGISGDVNVGSQQSDTKDSPVPSHITRNSDEKSSLEKTSSVESASSAELQTCGTSNEERKTGQNNQEFLDEVPLEETLTNETINAGSLEVSSDMTEAMAISSNSFKTTDKDVMTVSEVTASINSPSEEDSSEVPEVLDKSMVEEEDDDDYVELKVESSPSEEASPSTELQDNSLSTAASEASERLDMFNNEHKLVFQEEEPASKKQTDAETHDPKDSGILTMTASGSSATSPGTPASQATGPSDIGQVLKEGEETTSFAGETKVISDSHGDIFESPTTSEQRIARLDVSSVATDTERLELKASTNMEAPQPHQPVLEMSRQQEQPGRGTAPDAVNGQRRDSRSMFRIPEFRWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDSMIMACGGILPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKNMSSGGILRQCLRLVCAVAVRNCLECQQHSQLKNKGDTGKGQKTTHSLISMGKSGAKSPVDIITGGISPVRDFDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERPGQSFKERGSESENLSVPDVESSSAALSPLTPPSVEESESTSSARRRDSGIGEETATGSGSNVDITPPVASPSVSAGPDAISEVLCTLSLEVNKSQESKNDGGHESDNKAAASVSVSKNVNVKDILRSLVNIPADGVTVDPALLPPTCLGVLGDLSVEQPVQFRSFDRSVIIATKKSTVLPSTLTTSIPTNAVSVVSSVDSAQASDAGRESPGGRSSSAKLPAVPAVGSVPQDQVSNMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREDEKMCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSTVSRPREFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHAADEDILAKGKQSIKSHALGNQNLENEILLEGDDDTLSSVEEKDLENLTGPVSLSTPAQLVAPSAVVKGTLSVTSSELYFEVDEEDPNFRKMDPKILAYTEGLHGKWLFTEIRSVFSRRYLLQNTALEIFMANRVAVMFNFPDSATVKKVVNYLPRVGIGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGTVVSDVELPPWARTSEEFVRINRLAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAIPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILICGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLTRSESYIGGNCYILSGSRDATLLLWYWNGKSSGIGDNPGSETTTPRAILTGHDYEVTCAAVCAELGLVLSGSKEGPCLIHSMNGDLLRTLEGPENCLRPKLIQASREGHCVIFYENGFFCTFSVNGKLQATMETDDNIRAIQLSRDGQYLLTGGDNGVVMVWQVSDLKQLFAYPGCDAGIRAMALSHDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY", "length": 2799, "header": "tr|A0A287A3N7-1|A0A287AAK0_PIG Computationally mapped isoform of Neurobeachin OS=Sus scrofa OX=9823 GN=LRBA PE=1 SV=1 CANONICAL=A0A287AAK0-1" }, "locus": { "chromosome": "8", "start_pos": 78679930, "end_pos": 77971152, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046874.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046874.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038505.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038505.1" } ] } }, { "isoform_ac": "A0A287AAK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0/entry#A0A287AAK0-1", "sequence": { "sequence": "MASEDNNVPSPPPTGDDEGGGGKEETPAEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETIFNLLVGGQFDLEMNFIIQEGESIICMVDLLEKCDVTCQAEVWSMFTAILKKSIRNLQICTEVGLVEKVLGQIEKADSMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGQWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIITSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMAAVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLFAQLDYKQYLSDEVDLTICSTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKAHVSRAVLELCLAFSKYLSNLHNGMPLLKQLCDHILLNPAIWIHTPAKVQMTLYTYLSTEFIGTVNIYNAIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEMLSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMAEHPNSMIPAFDERNGLRVMYKLMASTSEGIRVQALKAMGYFLKHLAPKRKAEIMLGHGLFSLLAERLMLQTNLITMTTYNVLFEILIEQICTQVIHKQHPDPDSSVKIQNPQILKVIATLLRNSPQCPESIEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKNSDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLASVFREHQGKVDEEIGPCSSSPDQAVSGISGDVNVGSQQSDTKDSPVPSHITRNSDEKSSLEKTSSVESASSAELQTCGTSNEERKTGQNNQEFLDEVPLEETLTNETINAGSLEVSSDMTEAMAISSNSFKTTDKDVMTVSEVTASINSPSEEDSSEVPEVLDKSMVEEEDDDDYVELKVESSPSEEASPSTELQDNSLSTAASEASERLDMFNNEHKLVFQEEEPASKKQTDAETHDPKDSGILTMTASGSSATSPGTPASQATGPSDIGQVLKEGEETTSFAGETKVISDSHGDIFESPTTSEQRIARLDVSSVATDTERLELKASTNMEAPQPHQPVLEMSRQQEQPGRGTAPDAVNGQRRDSRSMFRIPEFRWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDSMIMACGGILPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKNMSSGGILRQCLRLVCAVAVRNCLECQQHSQLKNKGDTGKGQKTTHSLISMGKSGAKSPVDIITGGISPVRDFDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERPGQSFKERGSESENLSVPDVESSSAALSPLTPPSVEESESTSSARRRDSGIGEETATGSGSNVDITPPVASPSVSAGPDAISEVLCTLSLEVNKSQESKNDGGHESDNKAAASVSVSKNVNVKDILRSLVNIPADGVTVDPALLPPTCLGVLGDLSVEQPVQFRSFDRSVIIATKKSTVLPSTLTTSIPTNAVSVVSSVDSAQASDAGRESPGGRSSSAKLPAVPAVGSVPQDQVSNMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREDEKMCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSTVSRPREFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHAADEDILAKGKQSIKSHALGNQNLENEILLEGDDDTLSSVEEKDLENLTGPVSLSTPAQLVAPSAVVKGTLSVTSSELYFEVDEEDPNFRKMDPKILAYTEGLHGKWLFTEIRSVFSRRYLLQNTALEIFMANRVAVMFNFPDSATVKKVVNYLPRVGIGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAIPAVITVTANRLFAVNKWHNLPASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILICGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLTRSESYIGGNCYILSGSRDATLLLWYWNGKSSGIGDNPGSETTTPRAILTGHDYEVTCAAVCAELGLVLSGSKEGPCLIHSMNGDLLRTLEGPENCLRPKLIQASREGHCVIFYENGFFCTFSVNGKLQATMETDDNIRAIQLSRDGQYLLTGGDNGVVMVWQVSDLKQLFAYPGCDAGIRAMALSHDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY", "length": 2834, "header": "tr|A0A287AAK0-1|A0A287AAK0_PIG Isoform 1 of Neurobeachin OS=Sus scrofa OX=9823 GN=LRBA PE=1 SV=1 CANONICAL=A0A287AAK0-1" }, "locus": { "chromosome": "8", "start_pos": 78679930, "end_pos": 77971152, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038989.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038989.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041038.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041038.1" } ] } }, { "isoform_ac": "A0A287AFA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0/entry#A0A287AFA2-1", "sequence": { "sequence": "MASEDNNVPSPPPTGDDEGGGGKEETPAEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETIFNLLVGGQFDLEMNFIIQEGESIICMVDLLEKCDVTCQAEVWSMFTAILKKSIRNLQICTEVGLVEKVLGQIEKADSMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGQWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIITSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMAAVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLFAQLDYKQYLSDEVDLTICSTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKAHVSRAVLELCLAFSKYLSNLHNGMPLLKQLCDHILLNPAIWIHTPAKVQMTLYTYLSTEFIGTVNIYNAIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEMLSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMAEHPNSMIPAFDERNGLRRKAEIMLGHGLFSLLAERLMLQTNLITMTTYNVLFEILIEQICTQVIHKQHPDPDSSVKIQNPQILKVIATLLRNSPQCPESIEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKNSDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLASVFREHQGKVDEEIGPCSSSPDQAVSGISGDVNVGSQQSDTKDSPVPSHITRNSDEKSSLEKTSSVESASSAELQTCGTSNEERKTGQNNQEFLDEVPLEETLTNETINAGSLEVSSDMTEAMAISSNSFKTTDKDVMTVSEVTASINSPSEEDSSEVPEVLDKSMVEEEDDDDYVELKVESSPSEEASPSTELQDNSLSTAASEASERLDMFNNEHKLVFQEEEPASKKQTDAETHDPKDSGILTMTASGSSATSPGTPASQATGPSDIGQVLKEGEETTSFAGETKVISDSHGDIFESPTTSEQRIARLDVSSVATDTERLELKASTNMEAPQPHQPVLEMSRQQEQPGRGTAPDAVNGQRRDSRSMFRIPEFRWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDSMIMACGGILPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKNMSSGGILRQCLRLVCAVAVRNCLECQQHSQLKNKGDTGKGQKTTHSLISMGKSGAKSPVDIITGGISPVRDFDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERPGQSFKERGSESENLSVPDVESSSAALSPLTPPSVEESESTSSARRRDSGIGEETATGSGSNVDITPPVASPSVSAGPDAISEVLCTLSLEVNKSQESKNDGGHESDNKAAASVSVSKNVNVKDILRSLVNIPADGVTVDPALLPPTCLGVLGDLSVEQPVQFRSFDRSVIIATKKSTVLPSTLTTSIPTNAVSVVSSVDSAQASDAGRESPGGRSSSAKLPAVPAVGSVPQDQVSNMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREDEKMCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSTVSRPREFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHAADEDILAKGKQSIKSHALGNQNLENEILLEGDDDTLSSVEEKDLENLTGPVSLSTPAQLVAPSAVVKGTLSVTSSELYFEVDEEDPNFRKMDPKILAYTEGLHGKWLFTEIRSVFSRRYLLQNTALEIFMANRVAVMFNFPDSATVKKVVNYLPRVGIGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAIPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILICGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLTRSESYIGGNCYILSGSRDATLLLWYWNGKSSGIGDNPGSETTTPRAILTGHDYEVTCAAVCAELGLVLSGSKEGPCLIHSMNGDLLRTLEGPENCLRPKLIQASREGHCVIFYENGFFCTFSVNGKLQATMETDDNIRAIQLSRDGQYLLTGGDNGVVMVWQVSDLKQLFAYPGCDAGIRAMALSHDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY", "length": 2824, "header": "tr|A0A287AFA2-1|A0A287AFA2_PIG Computationally mapped isoform of LPS responsive beige-like anchor protein OS=Sus scrofa OX=9823 GN=LRBA PE=1 SV=1 CANONICAL=A0A287AAK0-1" }, "locus": { "chromosome": "8", "start_pos": 78679930, "end_pos": 77971152, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056658.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056658.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042566.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042566.1" } ] } }, { "isoform_ac": "A0A287B945-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0/entry#A0A287B945-1", "sequence": { "sequence": "MASEDNNVPSPPPTGDDEGGGGKEETPAEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETIFNLLVGGQFDLEMNFIIQEGESIICMVDLLEKCDVTCQAEVWSMFTAILKKSIRNLQICTEVGLVEKVLGQIEKADSMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGQWAIALPPIAKWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIITSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMAAVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLFAQLDYKQYLSDEVDLTICSTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKAHVSRAVLELCLAFSKYLSNLHNGMPLLKQLCDHILLNPAIWIHTPAKVQMTLYTYLSTEFIGTVNIYNAIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEMLSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMAEHPNSMIPAFDERNGLRVMYKLMASTSEGIRVQALKAMGYFLKHLAPKRKAEIMLGHGLFSLLAERLMLQTNLITMTTYNVLFEILIEQICTQVIHKQHPDPDSSVKIQNPQILKVIATLLRNSPQCPESIEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKNSDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLASVFREHQGKVDEEIGPCSSSPDQAVSGISGDVNVGSQQSDTKDSPVPSHITRNSDEKSSLEKTSSVESASSAELQTCGTSNEERKTGQNNQEFLDEVPLEETLTNETINAGSLEVSSDMTEAMAISSNSFKTTDKDVMTVSEVTASINSPSEEDSSEVPEVLDKSMVEEEDDDDYVELKVESSPSEEASPSTELQDNSLSTAASEASERLDMFNNEHKLVFQEEEPASKKQTDAETHDPKDSGILTMTASGSSATSPGTPASQATGPSDIGQVLKEGEETTSFAGETKVISDSHGDIFESPTTSEQRIARLDVSSVATDTERLELKASTNMEAPQPHQPVLEMSRQQEQPGRGTAPDAVNGQRRDSRSMFRIPEFRWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDSMIMACGGILPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKNMSSGGILRQCLRLVCAVAVRNCLECQQHSQLKNKGDTGKGQKTTHSLISMGKSGAKSPVDIITGGISPVRDFDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERPGQSFKERGSESENLSVPDVESSSAALSPLTPPSVEESESTSSARRRDSGIGEETATGSGSNVDITPPVASPSVSAGPDAISEVLCTLSLEVNKSQESKNDGGHESDNKAAASVSVSKNVNVKDILRSLVNIPADGVTVDPALLPPTCLGVLGDLSVEQPVQFRSFDRSVIIATKKSTVLPSTLTTSIPTNAVSVVSSVDSAQASDAGRESPGGRSSSAKLPAVPAVGSVPQDQVSNMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREDEKMCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSTVSRPREFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHAADEDILAKGKQSIKSHALGNQNLENEILLEGDDDTLSSVEEKDLENLTGPVSLSTPAQLVAPSAVVKGTLSVTSSELYFEVDEEDPNFRKMDPKILAYTEGLHGKWLFTEIRSVFSRRYLLQNTALEIFMANRVAVMFNFPDSATVKKVVNYLPRVGIGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAIPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILICGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLTRSESYIGGNCYILSGSRDATLLLWYWNGKSSGIGDNPGSETTTPRAILTGHDYEVTCAAVCAELGLVLSGSKEGPCLIHSMNGDLLRTLEGPENCLRPKLIQASREGHCVIFYENGFFCTFSVNGKLQATMETDDNIRAIQLSRDGQYLLTGGDNGVVMVWQVSDLKQLFAYPGCDAGIRAMALSHDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY", "length": 2823, "header": "tr|A0A287B945-1|A0A287B945_PIG Computationally mapped isoform of Lipopolysaccharide-responsive and beige-like anchor protein OS=Sus scrofa OX=9823 GN=LRBA PE=1 SV=1 CANONICAL=A0A287AAK0-1" }, "locus": { "chromosome": "8", "start_pos": 78679930, "end_pos": 77971152, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037220.2", "url": "https://www.ensembl.org/id/ENSSSCT00000037220.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053041.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053041.1" } ] } }, { "isoform_ac": "A0A287BIY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0/entry#A0A287BIY7-1", "sequence": { "sequence": "MASEDNNVPSPPPTGDDEGGGGKEETPAEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETIFNLLVGGQFDLEMNFIIQEGESIICMVDLLEKCDVTCQAEVWSMFTAILKKSIRNLQICTEVGLVEKVLGQIEKADSMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGQWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIITSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMAAVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLFAQLDYKQYLSDEVDLTICSTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKAHVSRAVLELCLAFSKYLSNLHNGMPLLKQLCDHILLNPAIWIHTPAKVQMTLYTYLSTEFIGTVNIYNAIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEMLSLRAFLLMFIKQLVMKDDNLMDVLQLLVALMAEHPNSMIPAFDERNGLRVMYKLMASTSEGIRVQALKAMGYFLKHLAPKRKAEIMLGHGLFSLLAERLMLQTNLITMTTYNVLFEILIEQICTQVIHKQHPDPDSSVKIQNPQILKVIATLLRNSPQCPESIEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKNSDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLASVFREHQGKVDEEIGPCSSSPDQAVSGISGDVNVGSQQSDTKDSPVPSHITRNSDEKSSLEKTSSVESASSAELQTCGTSNEERKTGQNNQEFLDEVPLEETLTNETINAGSLEVSSDMTEAMAISSNSFKTTDKDVMTVSEVTASINSPSEEDSSEVPEVLDKSMVEEEDDDDYVELKVESSPSEEASPSTELQDNSLSTAASEASERLDMFNNEHKLVFQEEEPASKKQTDAETHDPKDSGILTMTASGSSATSPGTPASQATGPSDIGQVLKEGEETTSFAGETKVISDSHGDIFESPTTSEQRIARLDVSSVATDTERLELKASTNMEAPQPHQPVLEMSRQQEQPGRGTAPDAVNGQRRDSRSMFRIPEFRWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDSMIMACGGILPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKNMSSGGILRQCLRLVCAVAVRNCLECQQHSQLKNKGDTGKGQKTTHSLISMGKSGAKSPVDIITGGISPVRDFDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERPGQSFKERGSESENLSVPDVESSSAALSPLTPPSVEESESTSSARRRDSGIGEETATGSGSNVDITPPVASPSVSAGPDAISEVLCTLSLEVNKSQESKNDGGHESDNKAAASVSVSKNVNVKDILRSLVNIPADGVTVDPALLPPTCLGVLGDLSVEQPVQFRSFDRSVIIATKKSTVLPSTLTTSIPTNAVSVVSSVDSAQASDAGRESPGGRSSSAKLPAVPAVGSVPQDQVSNMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREDEKMCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSTVSRPREFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHAADEDILAKGKQSIKSHALGNQNLENEILLEGDDDTLSSVEEKDLENLTGPVSLSTPAQLVAPSAVVKGTLSVTSSELYFEVDEEDPNFRKMDPKILAYTEGLHGKWLFTEIRSVFSRRYLLQNTALEIFMANRVAVMFNFPDSATVKKVVNYLPRVGIGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGTVVSDVELPPWARTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSISDPILREAVESQIRSFGQTPSQLLIEPHPPRGSAMQASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAIPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILICGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLTRSESYIGGNCYILSGSRDATLLLWYWNGKSSGIGDNPGSETTTPRAILTGHDYEVTCAAVCAELGLVLSGSKEGPCLIHSMNGDLLRTLEGPENCLRPKLIQASREGHCVIFYENGFFCTFSVNGKLQATMETDDNIRAIQLSRDGQYLLTGGDNGVVMVWQVSDLKQLFAYPGCDAGIRAMALSHDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY", "length": 2834, "header": "tr|A0A287BIY7-1|A0A287BIY7_PIG Computationally mapped isoform of LPS responsive beige-like anchor protein OS=Sus scrofa OX=9823 GN=LRBA PE=1 SV=2 CANONICAL=A0A287AAK0-1" }, "locus": { "chromosome": "8", "start_pos": 78679930, "end_pos": 77971152, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051059.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051059.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056028.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056028.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1192, "start_aa": "Thr", "end_pos": 1192, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1192", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1394, "start_aa": "Thr", "end_pos": 1394, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1394", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1625, "start_aa": "Thr", "end_pos": 1625, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1625", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A3N7", "url": "https://www.uniprot.org/uniprotkb/A0A287A3N7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JYR4-1", "protein_name": "Lipopolysaccharide-responsive and beige-like anchor protein", "gene_name": "Lrba", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASEDNRAPSRPPTGDDGGGEGKEETPTEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETVFNLLVGGQFDLEMNFIIQEAESITCMVELLEKCDITCQAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDSMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGQWPPHAGKLLSVLKHMPQKYAPDAFFNFPGKSAAAIALPPIARWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIITSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMTAVYLFSDALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFTYNARATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSVGGVQVLFPLFAQLDYRQYLSDEVDLTICTTLLAFIMELLKNSVAMQEQMLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQNGMPLLKQLCDHVLLNPAVWIHTPAKVQLMLYTYLSTEFIGTVNIYNTVRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEILSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMAEHPNSMTPAFDQRNGLRVIYKLLASKSEGIRVQALKALGYFLKHLAPKRKAEVMLGHGLFSLLAERLMLQTNLITMTMYNVLFEILIEQICTQVIHKQHPDPDSTVKIQNPQILKVIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKSSDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLANIFREEQGKGDEEIGPCSASLSPEGTGVTRDVDVSEGPQHSDRKESLISPHFTTNSDENSSIGKASSIDSASNIELQTPGYEKKVEQGNQELLDQAAMEEATTNEAKHACDLEASSDAVEPVTLTSTSSEPGKDTVTISGVRASVSSPSEQDAAEMPELLENSGVEEEDGDDDYVELKVEGIEGSPAEEARLPAERQAEEARLPAEHQAEEACQPAERQGESVSVAASEGREEVEVCGNGCELQEEAPITKSHNDPETGDSKESGFPTVATAGSLATSSEVPVPQTTLQPDSDEMLGGGVKTDIAGETESVSDCADDVSEAPATSEQKIAKLDVSSVASDTERFELKASTSTEAPQPQRHGLEISRQQEHPRQETAPDTGDQQRRDSRPTMFRIPEFKWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDNMVMACGGILPLLSAATSATHELENVEPAQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKNMSSGGILRQCLRLVCAVAVRNCLECQQHSQLKARGEAAKSLKAVHSLVPVGRSAAKSPVDIVTGGISPVRDLDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQDERHSQSLKEAGSDNGTVSLPDAENTTAEFSSLTLSSVEESLEGTSSTRRRDSGLGEETASGLGSSMSVASPAAPLGVSTGPDAISEVLCTLSLEVNKSQETKNDGGNELDGKVTPSVPVSKNVNVKDILRSLVNMPADGVTVDPALLPPACLGALGDLSVDPPVQFRSFDRSVIIATKKSSVLPSTLTASAPSNAVSVVSSVDSTQVPDAGGESPGSRSPNAKLPSVPAVGSVPQDPVTHMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREEEKMCDHLIRAAKYRDHVTATQLIQKVINLLRDKHGAWGSCAVSRPREFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHAADEDILAKGKQSIKSQALGNQNSENEALLEGDDDTLSSVDEKDLENLAGPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDSATVKKVVNYLPRVGVGTSFGLPQTRRISLATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVSLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQAYLLLQSPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAVPAVITVTANRLFAVNKWHSLPAHQGAVQDQPYQLPVEIDPLIACGTGTHRRQVTDLLDQSIQVHSQCFVITSDNRHILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWNGKSSGIGDNPGSETTTPRAILTGHDYEITCAVVCAELGLVLSGSQEGPCLIHSMNGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGCFCTFSVNGKLQATVETDDHIRAIQLSRDGQYLLTGGDNGVVIVRQVSDLKQLFAYPGCDAGIRAMALSFDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY", "length": 2883 }, "evidence": [ { "id": "A0A287AAK0", "url": "https://omabrowser.org/oma/group/A0A287AAK0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M3AI36-1", "protein_name": "Neurobeachin", "gene_name": "lrba", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASAGDSAVQIPIRGIRMKFAVLAGLLEAGEVSNRDTVETIFNLLVGGQFDLEMNFIIQETESIICMVELLDKCDSTCQAEVWNMFTAVLKKSLRNLQACTDIGLIQLVLQRIDRAETMIADLMVDMLGVLASYSITVKELKLYFSKLKGEQGQWPPHAVKLLSVLKSMAQRNGPDSFFSFPGKSAAAIALPPIAKWPYQNGFTFHTWLRLDPINNINVDKDKPYLYCFRTNKGLGYSAHFVGGCLIVTSLKSKAKGFQHCVKYDFKPQKWYMVTIVHIYNRWKNSEISCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMGAVYLFSEALSAAQILAIYQLGPGYKGTFKHKAESDLLFAEHHKMLLYDGKLSACIAFTYNPRATDAQLCLESSPKDNASIFVHSPHALMLQDVKAVVTHSVQSAIHSIGGVQVLFPLFAQLDFLQHSGDELDTSVCCTLLSFVMELLKGSVAMQEQVLACKGFLVIGYSLEKSSKVHVTRPVLDIVLAFARYLSNLPTGVMLLKQLCDHILFNPTIWIHAPAKVQLVLYTYLATEFISTVTIYNAIRRVGTVLQVMHTLKYFYWVVNPLDRSGITPKGLDGPRPNQKEIHSLRAFLLLFVKQLIMKDHGIKEDELQSILNYLLTMHEDDNLMDVLQLLVALMSEHPGSMVQAFDQRNGIRVIFKLLASTSEGIRVQALKVLGYFLKYLSPKRKSEVMLAHGLFSLLTERLMLHSNQFTVTTYNVLFEILTEQICTQVIHKQHPDPDSTVKIQNPQILKVIAALLKNAPPEAESMEVRRIFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCFINPKNSEEQKITEMVYAIFRILLYHAIKYEWGGWRVWVDTLSITHSKVTFEQHKENLARMFLEYQRIGSEGGSESRIRTISGVSQDSQFLASANGELHTEEKAPSTVIELRVEEQDNDQTADNEEMQTQIPVTVSNILVRDEEERLTDTVPTSVEMQDRDKDEQYAVKEPEKDNEIKHMDDNHKTGDEDREQMENVKTEGRVEEESSNLSIKDDTDSPQTETDKNAKDATEAVKMSDEGKTSNAENEQNVQVEDEKKDLGDSTLEAVKEDSTQKSSEVLVHEETSTTGASVVNEDSTDVSSASNFVKVSDDSTEDSSFVSATTGETDDHGVEREDGGKEKENKSETDKDEKLMENEKTVGIQDSPAPMVEVDLNQSSSPEETKPQTEGHGDVEAEQTTTEQKSKAEVSSSAESISQDAANNQDSPKVAGTDNSANKTKEIKIARLDVSSVASDTERLELKDTSATNPSANQAAPTSPTGQSNEGSSSARSTMFRIPEFKWSHMHQRLLTDLLFSIETDVQMWRSHSTKTVMDFVNSSENVVFVHNTVHLISQVVDNLIMACGGILPLLSAATSSSHELENIEPSQGLAVEASLMFLQRLINLVDVLIFASSLNFTEIEAEKNMSSGGILRQCLRLVCAMAVRNCLECQQHTLSKSGAESSRGQQSLLGAAKSIPAQSPVDIVTGGMSPIRDLDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPHNDRRNTQRSQSVRSTESVQSDLENGLSPLHRDSGIEDEKASDIQSNVKAQTGPDAVSEALSTLSDEVRRGQEDRDSKGKNVNVKDILRSLVSAPSDDIMVDPSLIPPGFLGAVSEASRDQSIQFHSFDRSVVVAPKKAGGAPSPGMSTVSASASVPSATAASSGGTPVNSVSVVSAGETVQSTESTPGGTSTSSNLPSVPALSPMTQTSTPNMSISERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSHTMKDHLVRVANEAEFILSRQRAEDIQKHAEFESHCAQYSAEKRDEEKMCDHLIRAAKYRDHVTSTQLIQKIVNILTDKHGAWGSSAFSRPREFWRLDYWEDDLRRRRRFIRNPFGSTHSEATLKAAAEHAPEEDVLKGKQSIRSSVLGNQNSESELLLEDDDTLSSLEEKELENLTGPVNLSTSAQLVAPAVVVKGTLSITALELYFEVDEEDPSFKNIDPKILAYTEGLHGKWLFTEIRAVFSRRYLLQNTALEVFMANRTAVMFNFPDAATVKKVVHCLPRVGVGTNVGLPQTRRISLASPKQLYKASNMTQRWQRREISNFEYLMFLNTISGRTFNDLNQYPVFPWVITNYDSEELDLTLPSNYRDLSKPIGALNPKRAAFFSERFESWEDEQVPKFHYGTHYSTSSFTQMWLLRIEPFTTFFLNFQGGKFDHADRTFSSVSRAWRNCQRDTSDVKELIPEFYYLPEMFVNSNNYNLGVMDDGTVVSDVELPPWAKSPEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAIRALNVFYYLTYEGAVNLSSISDPMLREAVESQIRSFGQTPCQLLIEPHPPRSSAMQVYLLLQTPLMFTEQMQQDVIMVLKFPSNSPVTHVAANTQSGLTNAAVITVTANRLFAVNKWHGLTGHQTSSVQDQQYQLPVEIDPLIASNVGAHRRQISDLLDQSIQVNAQCFVITADNRFILLCGFWDKSFRVYSTDTGKLTQIVFGHLDVVTCLARSESYIGGDCYVLSGSRDATLLLWYWNGKHSSIGESAGTEFVTPRAILTGHDCEVTCASVCAELGLVISGCREGPCLVHSMNGDLLRTLEGPDGCMRPRLVLSSTEGHCVIYYDKGHFCVFSINGKLLGHMEVEDNIKAMLLSKDGQYLLCGGDAGVLNVWQIHDLKQLFTYPGCDAGIRSMAIAHDQRCIITGMASGSIVLFYNDFNRWHHEYQTRY", "length": 2866 }, "evidence": [ { "id": "A0A287AAK0", "url": "https://omabrowser.org/oma/group/A0A287AAK0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A9J7F2H9-1", "protein_name": "Lipopolysaccharide-responsive and beige-like anchor protein", "gene_name": "Lrba", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASEDNRAPSRPPTGDDGGGGGTEETPAEGGALSLKPGLPIRGIRMKFAVLSGLVEVGEVSNRDIVETVFNLLVGGQFDLEMNFIIQEGESIICMVELLEKCDITCQAEVWSMFTAILKKSIRNLQVCTEVGLVEKILGKIEKVDSMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGQWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIARWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIITSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTNDTFDKCFLGSSETADANRVFCGQMTAVYLFSDALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLFAQLDYRQYLSDEVDLTICATLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQNGMPLLKQLCDHILLNPAIWIHTPAKVQLMLYTYLSTEFIGTVNIYNTIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEILSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMAEHPNSMVPAFDQRNGLRVIYKLLASKSEGIRVQALKALGYFLKHLAPKRKAEVMLGHGLFSLLAERLMLQTNLISMTTYNVLFEILIEQISTQVNHKQHPDPDSTVKIQNPQILKVIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKNSDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLANIFREQQGKGDEGLGPCSSSLVPEVTGVTRDVDISVRPQHSDLKDSPNSPHFSRDSDENSSIGKNSSSVDSASNIELQTPDMSNDEKKMEKENQELLDQATLVEAATNEIKVASDLEASSDAVESVTLVSNSSEISGKDTMIINEVSASISSPSEQDAAEMPELLEKSGVEEEEDDDYVELKVEGSPTEETSLPTELQGNSLSVTASEVREGQDMCGNDCEVQEEAPITKIQNDTETGDSKNSTFPTMATPGSLATSPEAPVSQTTVQSDIDEMPDEGIKTTNLAGETQSVSDFADNISEAPATSEQKIAKLDVSSVASDTERFELKASTSMEAPQPQQHGLEISRQQEQPGQETAPCAADQQRRDSRSTMFRIPEFKWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNIIFVHNTIHLISQVMDNMVMACGGILPLLSAATSATHELENIEPTQGLSIETSVTFLQRLISLVDVLIFASSLGFTEIEAEKNMSSGGILRQCLRLVCAVAVRNCLECQQHSQLKARGDTASLKTVHGLIPMGKSATKSPVDIVTGGISPVRDLDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQDERHSQSLKETGSENGNASLPDAENTPAEFSHLTLSSVEESVEGTSSTRRKDSGLGEETASGLGSNLSAASPAAPLGVSAGPDAISEVLCTLSLEVNKSQETKIDGGNELDRKVTASVPVSKNVNVKDILRSLVNMPADGVTVDPALLPPACLGALGDLSVDPPVQFRSFDRSVIIATKKSTVLPSTLPTTATTNAVSVVSSVDSTQVSDVGGESPGSRSPNAKLPSVPAVGSVPQDPVAHMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREEEKMCDHLIRAAKYRDHVTATQLIQKIINLLTDKHGAWGSSAVSRPREFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHASDEDILAKGKQSIKSQALGNQNSENEALLEADDDTLSSVDEKDLENLAGPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDTATVKKVVNYLPRVGVGTSFGLPQTRRISLATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVSLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQAYLLLQSPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIACGTGTHRRQVTDLLDQSIQVHSQCFVITSDNRYILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLTRSESYIGGNCYILSGSRDATLLLWYWNGKGNGIGDNPGSETTTPRAILTGHDYEITCAAICAELGLVLSGSQEGPCLIHSMNGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGCFCTFSVNGKLQATMETDDHIRAIQLSRDGQYLLTGGDNGVVIVRQVSDLKQLFAYPGCDAGIRAMALSFDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY", "length": 2862 }, "evidence": [ { "id": "A0A287AAK0", "url": "https://omabrowser.org/oma/group/A0A287AAK0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P50851-1", "protein_name": "Lipopolysaccharide-responsive and beige-like anchor protein", "gene_name": "LRBA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASEDNRVPSPPPTGDDGGGGGREETPTEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETVFNLLVGGQFDLEMNFIIQEGESINCMVDLLEKCDITCQAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDNMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGRWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIVTSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMTAVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLFAQLDYRQYLSDEIDLTICSTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQNGMPLLKQLCDHVLLNPAIWIHTPAKVQLMLYTYLSTEFIGTVNIYNTIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEMLSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMSEHPNSMIPAFDQRNGLRVIYKLLASKSEGIRVQALKAMGYFLKHLAPKRKAEVMLGHGLFSLLAERLMLQTNLITMTTYNVLFEILIEQIGTQVIHKQHPDPDSSVKIQNPQILKVIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKNSDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLANIFREQQGKVDEEIGLCSSTSVQAASGIRRDINVSVGSQQPDTKDSPVCPHFTTNGNENSSIEKTSSLESASNIELQTTNTSYEEMKAEQENQELPDEGTLEETLTNETRNADDLEVSSDIIEAVAISSNSFITTGKDSMTVSEVTASISSPSEEDASEMPEFLDKSIVEEEEDDDYVELKVEGSPTEEANLPTELQDNSLSPAASEAGEKLDMFGNDDKLIFQEGKPVTEKQTDTETQDSKDSGIQTMTASGSSAMSPETTVSQIAVESDLGQMLEEGKKATNLTRETKLINDCHGSVSEASSEQKIAKLDVSNVATDTERLELKASPNVEAPQPHRHVLEISRQHEQPGQGIAPDAVNGQRRDSRSTVFRIPEFNWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDNMVMACGGILPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKSMSSGGILRQCLRLVCAVAVRNCLECQQHSQLKTRGDKALKPMHSLIPLGKSAAKSPVDIVTGGISPVRDLDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERHSQSCTETGSENENVSLSEITPAAFSTLTTASVEESESTSSARRRDSGIGEETATGLGSHVEVTPHTAPPGVSAGPDAISEVLSTLSLEVNKSPETKNDRGNDLDTKATPSVSVSKNVNVKDILRSLVNIPADGVTVDPALLPPACLGALGDLSVEQPVQFRSFDRSVIVAAKKSAVSPSTFNTSIPTNAVSVVSSVDSAQASDMGGESPGSRSSNAKLPSVPTVDSVSQDPVSNMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREDEKMCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSAVSRPLEFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHVCIFKLRENSKATDEDILAKGKQSIRSQALGNQNSENEILLEGDDDTLSSVDEKDLENLAGPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQVSPLMFTDKAQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILVCGFWDKSFRVYSTDTGRLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWNGKCSGIGDNPGSETAAPRAILTGHDYEVTCAAVCAELGLVLSGSQEGPCLIHSMNGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGLFCTFSVNGKLQATMETDDNIRAIQLSRDGQYLLTGGDRGVVVVRQVSDLKQLFAYPGCDAGIRAMALSYDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY", "length": 2863 }, "evidence": [ { "id": "A0A287AAK0", "url": "https://omabrowser.org/oma/group/A0A287AAK0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9ESE1-1", "protein_name": "Lipopolysaccharide-responsive and beige-like anchor protein", "gene_name": "Lrba", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASEDNRAPSRPPTGDDGGGGGKEETPTEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETVFNLLVGGQFDLEMNFIIQEGESIMCMVELLEKCDVTCQAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDSMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGQWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIARWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIITSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMTAVYLFSDALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFMYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLFAQLDYKQYLSDEVDLTICTTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQNGMPLLKQLCDHILLNPAVWIHTPAKVQLMLYTYLSTEFIGTVNIYNTIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEILSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMAEHPNSMIPAFDQRNGLRVIYKLLASKSEGIRVQALKALGYFLKHLAPKRKAEVMLGHGLFSLLAERLMLQTNLITMTMYNVLFEILIEQICTQVIHKQHPDPDSTVKIQNPQILKVIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKNSDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLANIFREEQRKGDEETGPCSSSLVPEGTGATRGVDVSVGSQHEDRKDSPISPHFTRNSDENSSIGRASSIDSASNTELQTHDMSSDEKKVERENQELLDQATVEETATNGAKDDLETSSDAAEPVTINSNSLEPGKDTVTISEVSASISSPSEEDAAEMPELLEKSGVEEKEDDDYVELKVEGSPTEEAGLPTELQGEGLSVAASGGREEPDMCGHGCEVQVEAPITKIHNDPETTDSEDSRFPTVATAGSLATSSEVPVPQATVQSDSHEMLDGGMKATNLAGETESVSDCADNVSEAPATSEQKITKLDVSSVASDTERFELKASTSTEAPQPQRHGLEISRQQEQTAQGTAPDAVDQQRRDSRSTMFRIPEFKWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDNMVMACGGILPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKNMSSGGILRQCLRLVCAVAVRNCLECQQHSQLKARGDTAKSSKTIHSLIPMGKSAAKSPVDIVTGGISSVRDLDRLPARTWTLIGLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQDERHSQSLKETSSDNGNASLPDAENTPAEFSSLTLSSVEESLEGTSCTRRRDSGLGEETASGLGSGLSVASPAAPLGVSAGPDAISEVLCTLSLEVNKSQETRIDGGNELDRKVTPSVPVSKNVNVKDILRSLVNMPADGVTVDPALLPPACLGALGDLSVDPPMQFRSFDRSVIIATKKSSVLPSALTTSAPSSAVSVVSSVDPTHASDTGGESPGSRSPKCKTALSCKQLAPSHKTPAAHMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREEEKMCDHLIRAAKYRDHVTATQLIQKIINLLTDKHGAWGSSAVSRPREFWRLDYWEDDLRRRRRFVRNPLGSTHPEATLKTAVEHAADEDILAKGKQSIKSQALGNQNSENEALLEGDDDTLSSVDEKDLENLAGPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSFGLPQTRRISLATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAMPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIACGTGTHRRQVTDLLDQSIQVHSQCFVITSDNRYILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWNGKSSGIGDNPGGETATPRAILTGHDYEITCAAVCAELGLVLSGSQEGPCLIHSMNGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGCFCTFSVNGKLQATVETDDHIRAIQLSRDGQYLLTGGDNGVVIVRQVSDLKQLFAYPGCDAGIRAMALSFDQRCIISGMASGSIVLFYNDFNRWHHEYQTRY", "length": 2856 }, "evidence": [ { "id": "A0A287AAK0", "url": "https://omabrowser.org/oma/group/A0A287AAK0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0" } ], "pmid": "" }, { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein localization to phagophore assembly site", "id": "GO:0034497", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034497", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0" } ], "pmid": "" }, { "name": "mitophagy", "id": "GO:0000423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000423", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1038, "end_pos": 1040, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1345, "end_pos": 1347, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1432, "end_pos": 1434, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1573, "end_pos": 1575, "annotation": "n_glycosylation_sequon" }, { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1652, "end_pos": 1654, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1796, "end_pos": 1798, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1973, "end_pos": 1975, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2065, "end_pos": 2067, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2202, "end_pos": 2204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 335, "end_pos": 337, "annotation": 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} ], "function": [ { "annotation": "May play a role in growth regulation and in negative regulation of cell cycle progression.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A578", "url": "https://www.uniprot.org/uniprotkb/A0A287A578#function" }, { "database": "UniProtKB", "id": "ARBA00058130", "url": "https://www.uniprot.org/uniprotkb/ARBA00058130#function" }, { "database": "UniProtKB", "id": "F1RYS3", "url": "https://www.uniprot.org/uniprotkb/F1RYS3#function" } ] }, { "annotation": "May play a role in growth regulation. Is associated with G2/M phase arrest in response to DNA damage. May be an intermediate by which p53 mediates its role as an inhibitor of cellular proliferation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A578", "url": "https://www.uniprot.org/uniprotkb/A0A287A578#function" }, { "database": "UniProtKB", "id": "ARBA00025528", "url": "https://www.uniprot.org/uniprotkb/ARBA00025528#function" }, { "database": "UniProtKB", "id": "F1RYS3", "url": "https://www.uniprot.org/uniprotkb/F1RYS3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A578", "url": "https://www.uniprot.org/uniprotkb/A0A287A578" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCNG2", "url": "https://www.uniprot.org/uniprotkb/A0A287A578", "locus": { "chromosome": "8", "start_pos": 72800551, "end_pos": 72791703, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008988", "url": "https://www.ensembl.org/id/ENSSSCG00000008988" } ] } } ], "crossref": [ { "id": "A0A287A578", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A578", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008988", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008988", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20584", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20584", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523979", "url": "https://www.ncbi.nlm.nih.gov/gene/100523979", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039361", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039361", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523979", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523979", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QEWKYQP", "url": "https://omabrowser.org/oma/group/QEWKYQP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A578", "url": "https://www.orthodb.org/?gene=A0A287A578", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10177", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10177", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00134", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00134", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129147", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129147", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A578", "url": "https://www.uniprot.org/uniprotkb/A0A287A578", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A578-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A578-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYS3", "url": "https://www.uniprot.org/uniprotkb/F1RYS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYS3-1", "url": "https://www.uniprot.org/uniprotkb/F1RYS3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKDLGAEYLAGREGVQLLGLLNLYLEQEQRFQPREKGLSLIEATPENDNSLCSRLRNAKVEDLRSLTNFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCCFLLAARIVEEECNIPSTHDVIRISQCKCTASDINRMEKIISEKLHYELEATTALNFLHLYHTIVLCHTSERKEILSLDKLEAQLKACNCRLIFSKAKPSILALCLLNLEVETLKSIELLEILLLVKKHSKINDSEFIYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCFDESESEDSCEDMSCGEESLSGCPHSNPECAFFFSFKVAQTLCVPS", "length": 344, "header": "tr|A0A287A578-1|A0A287A578_PIG Isoform 1 of Cyclin-G1 OS=Sus scrofa OX=9823 GN=CCNG2 PE=3 SV=1 CANONICAL=A0A287A578-1" }, "isoforms": [ { "isoform_ac": "A0A287A578-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A578/entry#A0A287A578-1", "sequence": { "sequence": "MKDLGAEYLAGREGVQLLGLLNLYLEQEQRFQPREKGLSLIEATPENDNSLCSRLRNAKVEDLRSLTNFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCCFLLAARIVEEECNIPSTHDVIRISQCKCTASDINRMEKIISEKLHYELEATTALNFLHLYHTIVLCHTSERKEILSLDKLEAQLKACNCRLIFSKAKPSILALCLLNLEVETLKSIELLEILLLVKKHSKINDSEFIYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCFDESESEDSCEDMSCGEESLSGCPHSNPECAFFFSFKVAQTLCVPS", "length": 344, "header": "tr|A0A287A578-1|A0A287A578_PIG Isoform 1 of Cyclin-G1 OS=Sus scrofa OX=9823 GN=CCNG2 PE=3 SV=1 CANONICAL=A0A287A578-1" }, "locus": { "chromosome": "8", "start_pos": 72799217, "end_pos": 72791704, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053104.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053104.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039098.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039098.1" } ] } }, { "isoform_ac": "F1RYS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A578/entry#F1RYS3-1", "sequence": { "sequence": "MKDLGAEYLAGREGVQLLGLLNLYLEQEQRFQPREKGLSLIEATPENDNSLCSRLRNAKVEDLRSLTNFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCCFLLAARIVEEECNIPSTHDVIRISQCKCTASDINRMEKIISEKLHYELEATTALNFLHLYHTIVLCHTSERKEILSLDKLEAQLKACNCRLIFSKAKPSILALCLLNLEVETLKSIELLEILLLVKKHSKINDSEFIYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCFDESER", "length": 304, "header": "tr|F1RYS3-1|A0A287A578_PIG Computationally mapped isoform of Cyclin-G1 OS=Sus scrofa OX=9823 GN=CCNG2 PE=3 SV=2 CANONICAL=A0A287A578-1" }, "locus": { "chromosome": "8", "start_pos": 72797929, "end_pos": 72791704, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009845.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009845.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009592.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009592.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RYS3", "url": "https://www.uniprot.org/uniprotkb/F1RYS3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523979", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523979", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7INE3-1", "protein_name": "Cyclin-G2", "gene_name": "Ccng2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKDLGAEHLAGGEGVQLLGLLNFYLEQEQRFQPREKGLSLMEDTPENDNTLCSRLRNAKVEDLRSLTNFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCCFLLAARMVEEECNVPPTHDVIRISQCKCTASDIERMEKIISEKLHYELEATTALNFLHLYHAIVFCHTSERKEILSLDKLEAQLKACSCRLVFSKAKPSVLALCLLNLEIETIKSVELLEILLLVKKHLKISDTEFFYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCFDGSESEDSCEDMSCGEDSLSSSPPSDQECTFFFDFKVAQTLCFPS", "length": 344 }, "evidence": [ { "id": "A0A287A578", "url": "https://omabrowser.org/oma/group/A0A287A578/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0Y1D7-1", "protein_name": "Cyclin-G2", "gene_name": "CCNG2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGSEALRLFRQLNLHLELEGRFQPRERGLSLIECAAENENALCPRQRNAKVEDLWSLTNFFGFATETFVLAVNILDRFLALMKVKPKHLSCIGVCCFQLAAQVVEEECNIPSAHEIIRISQCKCTVSDLKRMEKIISEKLHFEFKATTALTFLHLYHTIVLCHTSERKEVLNLDKLEAQLKACNCRLVFSKAKPSVLALCLLTLEVQSLKSVELFEILLRVQKHSKISDCDLLYWRELVSKCLADYSSPECCKPDHKKLVWIVSRRTAQNLQNSYYSVPELPTIPEGGCFNESERWKCSTSDLQLPEPRWSQSLQIARPVTILLAQRPLGTDLQKHKEAPRNRAAETRRGQDSCCVCPFTATDGI", "length": 365 }, "evidence": [ { "id": "A0A287A578", "url": "https://omabrowser.org/oma/group/A0A287A578/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BIN6-1", "protein_name": "Cyclin-G1", "gene_name": "CCNG2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKDLGAEYLAGREGVQLFGLLNLYLEQEQRFQPREKGLSLIEATPETDNTLCPRLRNAKVEDLRSLTNFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCCFLLAARIVEEECNIPSTHDVIRISQCKCTASDIKRMEKIISEKLHYEFEATTALNFLHLYHTIVLCHTSERKEILSLDKLEAQLKACCCRLTFSKAKPSILALCLLNLEVETLKSIELLEILLLVKKHSKVNDSEFVYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCFDESESEDSCEDMSCGEESLSSSPHRDQECTFFFSFKVAQTLCFPS", "length": 344 }, "evidence": [ { "id": "A0A287A578", "url": "https://omabrowser.org/oma/group/A0A287A578/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O08918-1", "protein_name": "Cyclin-G2", "gene_name": "Ccng2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"A0A287A578", "url": "https://www.uniprot.org/uniprotkb/A0A287A578" } ], "pmid": "" }, { "name": "cyclin-dependent protein kinase holoenzyme complex", "id": "GO:0000307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000307", "evidence": [ { "database": "UniProtKB", "id": "A0A287A578", "url": "https://www.uniprot.org/uniprotkb/A0A287A578" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "A0A287A578", "url": "https://www.uniprot.org/uniprotkb/A0A287A578" } ], "pmid": "" }, { "name": "G1/S transition of mitotic cell cycle", "id": "GO:0000082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000082", "evidence": [ { "database": "UniProtKB", "id": "A0A287A578", "url": "https://www.uniprot.org/uniprotkb/A0A287A578" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cyclin-dependent protein serine/threonine kinase regulator activity", "id": "GO:0016538", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016538", "evidence": [ { "database": "UniProtKB", "id": "A0A287A578", "url": "https://www.uniprot.org/uniprotkb/A0A287A578" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A578-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 344, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A578-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A578" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A578", "database": "UniProtKB", "url": 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"count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A5B2-1", "uniprot_ac": "A0A287A5B2", "uniprot_id": "A0A287A5B2_PIG", "mass": { "chemical_mass": 38796.0, "monoisotopic_mass": 38796.0 }, "refseq": { "ac": "XP_005657215", "name": "immunoglobulin superfamily member 5 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657215" }, "gene_names": [ { "name": "IGSF5", "type": "recommended", "evidence": [ { "id": "A0A287A5B2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B2" } ] }, { "name": "IGSF5", "type": "synonym", "evidence": [ { "id": "XP_005657215", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657215" } ] } ], "protein_names": [ { "name": "Immunoglobulin superfamily member 5", "type": "recommended", "evidence": [ { "id": "A0A287A5B2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B2/entry#names_and_taxonomy" } ] }, { "name": "Junctional adhesion molecule 4", "type": "synonym", "evidence": [ { "id": "A0A287A5B2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B2/entry#names_and_taxonomy" } ] }, { "name": "immunoglobulin superfamily member 5 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005657215", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657215" } ] } ], "function": [ { "annotation": "Provides, together with MAGI1, an adhesion machinery at tight junctions, which may regulate the permeability of kidney glomerulus and small intestinal epithelial cells. Mediates calcium-independent homophilic cell adhesion. In testis, it may function as a cell adhesion molecule rather than a tight-junction protein. It may participate in the adhesion between spermatogonia-spermatogonia, spermatogonia-Sertoli cells, and Sertoli cells-Sertoli cells.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5B2", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B2#function" }, { "database": "UniProtKB", "id": "ARBA00059983", "url": "https://www.uniprot.org/uniprotkb/ARBA00059983#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A5B2", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IGSF5", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B2", "locus": {} } ], "crossref": [ { "id": "A0A287A5B2", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A5B2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012071", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012071", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517006", "url": "https://www.ncbi.nlm.nih.gov/gene/100517006", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517006", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517006", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HSSYYFV", "url": "https://omabrowser.org/oma/group/HSSYYFV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A5B2", "url": "https://www.orthodb.org/?gene=A0A287A5B2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44991", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44991", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44991:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44991:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005657215", "url": 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"https://www.uniprot.org/uniprotkb/A0A287A5B2/entry#A0A287A5B2-1", "sequence": { "sequence": "MEGSCRGVLAALVVLAGLAACGSGNEILEGPRNVTVVKGSEARFNCTISQGWKLIMWALKGTVVLSVTPTEPIITNDRFTSASYEEGGNFISEMIIHDVQLSDAGQVKCSLQNSDRDGSAFLSVQVMGALLIPGGSLVVLAEEPCNVTCRAWGWTPLPDISWEIGAPVSHSSYDSAPEPDDLQSAVSVLALTPLGSGSVTCVADMKGLPLQESVTVNLTVVQPPLGSVDKPGTSLPTWAIALLAVSLSLLSILIIVLIIIFCCCCASRREKEESSYQSQIRKSASVKTNTETFQTKSGKENYGYSSDEPRTTTSLPPKGSESSVPEQRGSRPPHQGLDHRQPGPASRPQVSFNVASPKKVRNATLV", "length": 366, "header": "tr|A0A287A5B2-1|A0A287A5B2_PIG Isoform 1 of Immunoglobulin superfamily member 5 OS=Sus scrofa OX=9823 GN=IGSF5 PE=3 SV=2 CANONICAL=A0A287A5B2-1" }, "locus": { "chromosome": "13", "start_pos": 203371365, "end_pos": 203330114, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043723.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043723.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038956.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038956.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5B2", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517006", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517006", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YEJ1-1", "protein_name": "Immunoglobulin superfamily member 5", "gene_name": "IGSF5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MERFQKFILLPFILAASLTGLGFCYSILNGPTNATVLAGSEARFNCTVANGWAILIWLLNTNPVLTVINSHGPIETSDRFTSQSYNNSQSFTSELIIHNTQLNDSGRIECSIQKIDGSSFAFLSVQVNGTLLIKNSTLIVKENTTVEIVCEALGWAPAPDITWMTNDSLIDKSRYVTQQSQGSNSLYNALSVLTLTPMDTEILTCLADIETLPSPQNATIAVIVGNSTLENNYSEDSTSTWVIVLAVVFSIVGFILLIILIWVVVRCCCLKKGSTYENEVRKISVKKKTDDRLGSRQRSGSENQGYVPEEPPYTGQIPTVVSLPPMSTKFTVPRPDLHTSSAPKGRPQRHTDYPINPKKIRNVTHV", "length": 366 }, "evidence": [ { "id": "A0A287A5B2", "url": "https://omabrowser.org/oma/group/A0A287A5B2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BPQ9-1", "protein_name": "Immunoglobulin superfamily member 5", "gene_name": "IGSF5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEGAAERGVLAVLVVLAVLAACGSSSEIIEGPKNVTALKGSEARFNCTISQGWKLVMWALRGTVVLSMTPNETIITSDRFTSASYQEGGNFISEMIIHDVQLSDAGQVKCSLQNSNRDGAAFLSVQVMGQLLIPGGSLVVIEDKPCNVTCRALNWTLLPDLSWEIGVPVSHSSYYSIPEPEDLQSAVSVLALTPQGNGTVTCVAEMKGLDVRESVTVNLTVVQPPLDSIDKPGTSLPTWAIVLLAVSLSLLLILIIVLIIIFCCCVSRTEKEESSYQSQIRKSATVKTSKDTAGTKLKSANENYGYHSDESRTTQPASLHAKSSEAGVPEQCSSRQPHQESDHRQLGPANHPQVSFYVASPKKVRNVTLV", "length": 370 }, "evidence": [ { "id": "A0A287A5B2", "url": "https://omabrowser.org/oma/group/A0A287A5B2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5VJ70-1", "protein_name": "Immunoglobulin superfamily member 5", "gene_name": "Igsf5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"A0A287A5B9", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515815", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515815", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AKF1-1", "protein_name": "Transmembrane protein 203", "gene_name": "TMEM203", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLFSLRELVQWLGFATFEIFLHGLALLVFSVLLVLKVDSEVSPLSWWVVFVPFFVADGLSTYFTAIVSVRLFQDGEKRLAVLRLFWILTILSLKFVFEMLLCQKLVERTRELWYGLIMSPVFILLQLLMIRACRVN", "length": 136 }, "evidence": [ { "id": "A0A287A5B9", "url": "https://omabrowser.org/oma/group/A0A287A5B9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8R235-1", "protein_name": "Transmembrane protein 203", "gene_name": "Tmem203", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFSLRELVQWLGFATFEIFVHLLALLVFSVLLALRVDGLTPGLSWWNVFVPFFAADGLSTYFTTIVSVRLFQDGEKRLAVLRLFWVLTVLSLKFVFEMLLCQKLVEQTRELWFGLITSPVFILLQLLMIRACRVN", "length": 136 }, "evidence": [ { "id": "A0A287A5B9", "url": "https://omabrowser.org/oma/group/A0A287A5B9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q969S6-1", "protein_name": "Transmembrane protein 203", "gene_name": "TMEM203", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLFSLRELVQWLGFATFEIFVHLLALLVFSVLLALRVDGLVPGLSWWNVFVPFFAADGLSTYFTTIVSVRLFQDGEKRLAVLRLFWVLTVLSLKFVFEMLLCQKLAEQTRELWFGLITSPLFILLQLLMIRACRVN", "length": 136 }, "evidence": [ { "id": "A0A287A5B9", "url": "https://omabrowser.org/oma/group/A0A287A5B9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5B9", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5B9", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B9" } ], "pmid": "" }, { "name": "intracellular calcium ion homeostasis", "id": "GO:0006874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006874", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5B9", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A5B9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 136, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A5B9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A5B9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A5D4-1", "uniprot_ac": "A0A287A5D4", "uniprot_id": "A0A287A5D4_PIG", "mass": { "chemical_mass": 156940.0, "monoisotopic_mass": 156940.0 }, "refseq": {}, "gene_names": [ { "name": "DIP2A", "type": "recommended", "evidence": [ { "id": "A0A287A5D4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A5D4" } ] } ], "protein_names": [ { "name": "Disco interacting A", "type": "synonym", "evidence": [ { "id": "A0A287A5D4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A5D4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A5D4", "url": "https://www.uniprot.org/uniprotkb/A0A287A5D4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DIP2A", "url": "https://www.uniprot.org/uniprotkb/A0A287A5D4", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000035657", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035657", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05905", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05905", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100621280", "url": "https://www.ncbi.nlm.nih.gov/gene/100621280", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000873", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000873", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010506", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010506", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042099", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042099", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045851", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045851", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22754", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22754", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22754:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22754:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00501", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00501", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06464", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06464", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23024", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23024", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A5D4", "url": "https://www.uniprot.org/uniprotkb/A0A287A5D4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5D4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BAX7", "url": "https://www.uniprot.org/uniprotkb/A0A287BAX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BAX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BAX7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIE8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIE8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPMPSKRRSALAPASAEAYTPPDTSSASEDEGSLRRPVRLASTPLQSHPSVQPWLGQAGQGSSTSSSASSTSSHPGGSPAAALAGPAALAHIDLHADPPDVTTGLGQPRHAYRERPQPASGRGAPRAGSGSVLETAGGVPVNSRVSSKIQQLLNTLKRPKRPPLKEFFVDDFEELLEVQQPDPNQPKPEGSQMAVLKGEPLAASTAWPPSLLAALRQWGTTQPRAPCLTALDTAGKATCTLTYGKLWSRSLKLAYTLLNKLTSKNERLLKPGDRVALVFPNSDPVMFTVAFYGCLLAELVPVPIEVPLTRKDAGSQQIGFLLGSCGVALALTTDACQKGLPKAQTGEVATFKGWPPLTWLVIDGKHLTKPPKDWHPSAQDVGAGTAYIEYKTSKEGSTVGVAVSHASLLAQCQALTQACGYAEAETLTNVLDFKRDAGLWHGVLTSVMNRMHVVSVPYALMKVNPLSWIQKVCAYKARAALVKSRDMHWSLLAQRGQRDVSLSSLRMLIVADGANPWSISSCDAFLNVFQSRGLRPEVVCPCATSPEALTVAIRRPPDLGGPPPRRAVLSMGGLSHGVIRVDAEEKLSVLTVQDVGQVMPGASVCVVKVEGTPYLCKTDEVGEICVNSSTAAAAYYGLLGITKSVFETVPVTVAGAPVSDRPFTRTGLLGFIGPDDLVFVVGKLDGLMVVGARRHNADDIVATALAVEPMKFVYRGRIAVFSVTVLHDDRIVLVAEQRPDASEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKAPLGGIHISETKQRFLEGVLHPCNVLMCPHTCVTNLPKPRQKQPEVGPASMIVGNLVAGKRIAQASGRELTHLEDSDQARKFLFLPDVLQWRAHTTPEHPLFLLLNAKGTVTSTATCVQLHKRAERVAAALTEKARLSAGAHVALVYPPGLELIAAFYGCLYCGCVPVTVRPPHPQNLATTLPTVKMIVEVSTSACVLTTQAIMRLLKSKEAAATVDVRTWPTILDTDDIPKKKLGSIFRPPSPDVLAYLDFSVSTTGILAGVKMSHAATSALCRSIKLQCELYPSRQIAICLDPYCGLGFALWCLCSVYSGHQSVLVPPPELESNVSLWLWAVSQYKARVTFCSYSVMEMCARGLGAQTAVLRTKGVNLSCVRTCMVVAEERPRIALTQSFSKLFRDLGLPARAVSTTFGCRVNVAICLQPNRLGKLAEQGTAGPDPTTVYVDTRALRHDRVRLVERGSPHSLPLTESGKILPGVKVIIAHTETKGPLGDSHLGEIWVSSPHNATGYYTVYGEEGLQADHFSARLSFGDTQTVWARTGFLGFLRRTELTDASGERHDALYVVGSLDETLELRGMRYHPIDIEASVIRAHRSVAECAVFTWTNLLVVVVELDGLEQDALDLVALVTNVVLEEHHLVVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM", "length": 1457, "header": "tr|A0A287A5D4-1|A0A287A5D4_PIG Isoform 1 of Disco interacting A OS=Sus scrofa OX=9823 GN=DIP2A PE=3 SV=3 CANONICAL=A0A287A5D4-1" }, "isoforms": [ { "isoform_ac": "A0A287A5D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5D4/entry#A0A287A5D4-1", "sequence": { "sequence": "MPMPSKRRSALAPASAEAYTPPDTSSASEDEGSLRRPVRLASTPLQSHPSVQPWLGQAGQGSSTSSSASSTSSHPGGSPAAALAGPAALAHIDLHADPPDVTTGLGQPRHAYRERPQPASGRGAPRAGSGSVLETAGGVPVNSRVSSKIQQLLNTLKRPKRPPLKEFFVDDFEELLEVQQPDPNQPKPEGSQMAVLKGEPLAASTAWPPSLLAALRQWGTTQPRAPCLTALDTAGKATCTLTYGKLWSRSLKLAYTLLNKLTSKNERLLKPGDRVALVFPNSDPVMFTVAFYGCLLAELVPVPIEVPLTRKDAGSQQIGFLLGSCGVALALTTDACQKGLPKAQTGEVATFKGWPPLTWLVIDGKHLTKPPKDWHPSAQDVGAGTAYIEYKTSKEGSTVGVAVSHASLLAQCQALTQACGYAEAETLTNVLDFKRDAGLWHGVLTSVMNRMHVVSVPYALMKVNPLSWIQKVCAYKARAALVKSRDMHWSLLAQRGQRDVSLSSLRMLIVADGANPWSISSCDAFLNVFQSRGLRPEVVCPCATSPEALTVAIRRPPDLGGPPPRRAVLSMGGLSHGVIRVDAEEKLSVLTVQDVGQVMPGASVCVVKVEGTPYLCKTDEVGEICVNSSTAAAAYYGLLGITKSVFETVPVTVAGAPVSDRPFTRTGLLGFIGPDDLVFVVGKLDGLMVVGARRHNADDIVATALAVEPMKFVYRGRIAVFSVTVLHDDRIVLVAEQRPDASEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKAPLGGIHISETKQRFLEGVLHPCNVLMCPHTCVTNLPKPRQKQPEVGPASMIVGNLVAGKRIAQASGRELTHLEDSDQARKFLFLPDVLQWRAHTTPEHPLFLLLNAKGTVTSTATCVQLHKRAERVAAALTEKARLSAGAHVALVYPPGLELIAAFYGCLYCGCVPVTVRPPHPQNLATTLPTVKMIVEVSTSACVLTTQAIMRLLKSKEAAATVDVRTWPTILDTDDIPKKKLGSIFRPPSPDVLAYLDFSVSTTGILAGVKMSHAATSALCRSIKLQCELYPSRQIAICLDPYCGLGFALWCLCSVYSGHQSVLVPPPELESNVSLWLWAVSQYKARVTFCSYSVMEMCARGLGAQTAVLRTKGVNLSCVRTCMVVAEERPRIALTQSFSKLFRDLGLPARAVSTTFGCRVNVAICLQPNRLGKLAEQGTAGPDPTTVYVDTRALRHDRVRLVERGSPHSLPLTESGKILPGVKVIIAHTETKGPLGDSHLGEIWVSSPHNATGYYTVYGEEGLQADHFSARLSFGDTQTVWARTGFLGFLRRTELTDASGERHDALYVVGSLDETLELRGMRYHPIDIEASVIRAHRSVAECAVFTWTNLLVVVVELDGLEQDALDLVALVTNVVLEEHHLVVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM", "length": 1457, "header": "tr|A0A287A5D4-1|A0A287A5D4_PIG Isoform 1 of Disco interacting A OS=Sus scrofa OX=9823 GN=DIP2A PE=3 SV=3 CANONICAL=A0A287A5D4-1" }, "locus": { "chromosome": "AEMK02000328.1", "start_pos": 275626, "end_pos": 210010, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051554.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051554.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039012.3", "url": "https://www.ensembl.org/id/ENSSSCP00000039012.3" } ] } }, { "isoform_ac": "A0A287BAX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5D4/entry#A0A287BAX7-1", "sequence": { "sequence": "MAERGCPLEAVPLPAEVRESLAELELELSEGDITQKGYEKKRAKLLARYAPLIQGADPSLQAESRLPGPAPSTAPALRPQKPRPSNTRDERFRSDVHTEAVQAALAKYRERKMPMPSKRRSALAPASAEAYTPPDTSSASEDEGSLRRPVRLASTPLQSHPSVQPWLGQAGQGSSTSSSASSTSSHPGGSPAAALAGPAALAHIDLHADPPDVTTGLGQPRHAYRERPQPASGRGAPRAGSGSVLETAGGVPVNSRVSSKIQQLLNTLKRPKRPPLKEFFVDDFEELLEVQQPDPNQPKPEGSQMAVLKGEPLAASTAWPPSLLAALRQWGTTQPRAPCLTALDTAGKATCTLTYGKLWSRSLKLAYTLLNKLTSKNERLLKPGDRVALVFPNSDPVMFTVAFYGCLLAELVPVPIEVPLTRKDAGSQQIGFLLGSCGVALALTTDACQKGLPKAQTGEVATFKGWPPLTWLVIDGKHLTKPPKDWHPSAQDVGAGTAYIEYKTSKEGSTVGVAVSHASLLAQCQALTQACGYAEAETLTNVLDFKRDAGLWHGVLTSVMNRMHVVSVPYALMKVNPLSWIQKVCAYKARAALVKSRDMHWSLLAQRGQRDVSLSSLRMLIVADGANPWSISSCDAFLNVFQSRGLRPEVVCPCATSPEALTVAIRRPPDLGGPPPRRAVLSMGGLSHGVIRVDAEEKLSVLTVQDVGQVMPGASVCVVKVEGTPYLCKTDEVGEICVNSSTAAAAYYGLLGITKSVFETVPVTVAGAPVSDRPFTRTGLLGFIGPDDLVFVVGKLDGLMVVGARRHNADDIVATALAVEPMKFVYRGRIAVFSVTVLHDDRIVLVAEQRPDASEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKAPLGGIHISETKQRFLEGVLHPCNVLMCPHTCVTNLPKPRQKQPEVGPASMIVGNLVAGKRIAQASGRELTHLEDSDQARKFLFLPDVLQWRAHTTPEHPLFLLLNAKGTVTSTATCVQLHKRAERVAAALTEKARLSAGAHVALVYPPGLELIAAFYGCLYCGCVPVTVRPPHPQNLATTLPTVKMIVEVSTSACVLTTQAIMRLLKSKEAAATVDVRTWPTILDTDDIPKKKLGSIFRPPSPDVLAYLDFSVSTTGILAGVKMSHAATSALCRSIKLQCELYPSRQIAICLDPYCGLGFALWCLCSVYSGHQSVLVPPPELESNVSLWLWAVSQYKARVTFCSYSVMEMCARGLGAQTAVLRTKGVNLSCVRTCMVVAEERPRIALTQSFSKLFRDLGLPARAVSTTFGCRVNVAICLQPNRLGKLAEQGTAGPDPTTVYVDTRALRHDRVRLVERGSPHSLPLTESGKILPGVKVIIAHTETKGPLGDSHLGEIWVSSPHNATGYYTVYGEEGLQADHFSARLSFGDTQTVWARTGFLGFLRRTELTDASGERHDALYVVGSLDETLELRGMRYHPIDIEASVIRAHRSVAECAVFTWTNLLVVVVELDGLEQDALDLVALVTNVVLEEHHLVVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM", 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"categories": [ "Protein Classification", "Other" ] }, { "id": "PF26054", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26054", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A5M6", "url": "https://www.uniprot.org/uniprotkb/A0A287A5M6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5M6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5M6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIT9", "url": "https://www.uniprot.org/uniprotkb/A0A287BIT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIT9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKINLGAHRTSLMSSGIWQRGKEEEGVYGFLIEDIKKEVTRASKLKCCICKKTGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNFASFCWNHRPVQMITSNNYGDSLPCTICLEFIDPIPTYSILRSPCCKNAWFHRDCLQVQAINAGVYFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAFQELLQHYEHCDVRRCRCKEGRDYNVPDSKWEIKRCQCCGSSGTHLACSSLQSWEQNWECLECRGILYNSGDFQKAKKHALPNTNVGITDCLLEESSPKLSRQSPGAQRKDLLRQGSKFRRDISTLIIELGFQIKKKPKRLFINKANIWNSALDGFRNQSFNPSYTIEVVYINENDRFGREQPGSKQEFLSLLMQQLENSPLFEGSLSKNLSLNSQALKENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPENTQPILDDVSDFDVAQIIIRINTATSVADLNSLINDCYNYLELIGCLRLITSISDKYMLAKDILVYHVIKRVQAPFESFKQGLKTLGVLEKIQTYPEAFCNIFCHKPESLSAKILSDLFTVHTLSDVQALGFWNSYLQAIEDGKSTVTMEDILIFATGCNSIPPAGFKPTPSIECLHMDFPVGNKCNNCLALPITSTYKEFQENMDFAIKNTLRLEKEENSHFSGH", "length": 671, "header": "tr|A0A287A5M6-1|A0A287A5M6_PIG Isoform 1 of G2/M-phase specific E3 ubiquitin protein ligase OS=Sus scrofa OX=9823 GN=G2E3 PE=4 SV=2 CANONICAL=A0A287A5M6-1" }, "isoforms": [ { "isoform_ac": "A0A287A5M6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5M6/entry#A0A287A5M6-1", "sequence": { "sequence": "MKINLGAHRTSLMSSGIWQRGKEEEGVYGFLIEDIKKEVTRASKLKCCICKKTGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNFASFCWNHRPVQMITSNNYGDSLPCTICLEFIDPIPTYSILRSPCCKNAWFHRDCLQVQAINAGVYFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAFQELLQHYEHCDVRRCRCKEGRDYNVPDSKWEIKRCQCCGSSGTHLACSSLQSWEQNWECLECRGILYNSGDFQKAKKHALPNTNVGITDCLLEESSPKLSRQSPGAQRKDLLRQGSKFRRDISTLIIELGFQIKKKPKRLFINKANIWNSALDGFRNQSFNPSYTIEVVYINENDRFGREQPGSKQEFLSLLMQQLENSPLFEGSLSKNLSLNSQALKENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPENTQPILDDVSDFDVAQIIIRINTATSVADLNSLINDCYNYLELIGCLRLITSISDKYMLAKDILVYHVIKRVQAPFESFKQGLKTLGVLEKIQTYPEAFCNIFCHKPESLSAKILSDLFTVHTLSDVQALGFWNSYLQAIEDGKSTVTMEDILIFATGCNSIPPAGFKPTPSIECLHMDFPVGNKCNNCLALPITSTYKEFQENMDFAIKNTLRLEKEENSHFSGH", "length": 671, "header": "tr|A0A287A5M6-1|A0A287A5M6_PIG Isoform 1 of G2/M-phase specific E3 ubiquitin protein ligase OS=Sus scrofa OX=9823 GN=G2E3 PE=4 SV=2 CANONICAL=A0A287A5M6-1" }, "locus": { "chromosome": "7", "start_pos": 68903743, "end_pos": 68856697, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058731.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058731.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039066.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039066.2" } ] } }, { "isoform_ac": "A0A287BIT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5M6/entry#A0A287BIT9-1", "sequence": { "sequence": "MSSGIWQRGKEEEGVYGFLIEDIKKEVTRASKLKCCICKKTGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNFASFCWNHRPVQMITSNNYGDSLPCTICLEFIDPIPTYSILRSPCCKNAWFHRDCLQVQAINAGVYFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAFQELLQHYEHCDVRRCRCKEGRDYNVPDSKWEIKRCQCCGSSGTHLACSSLQSWEQNWECLECRGILYNSGDFQKAKKHALPNTNVGITDCLLEESSPKLSRQSPGAQRKDLLRQGSKFRRDISTLIIELGFQIKKKPKRLFINKANIWNSALDGFRNQSFNPSYTIEVVYINENDRFGREQPGSKQEFLSLLMQQLENSPLFEGSLSKNLSLNSQALKENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPENTQPILDDVSDFDVAQIIIRINTATSVADLNSLINDCYNYLELIGCLRLITSISDKYMLAKDILVYHVIKRVQAPFESFKQGLKTLGVLEKIQTYPEAFCNIFCHKPESLSAKILSDLFTVHTLSDVQALGFWNSYLQAIEDGKSTVTMEDILIFATGCNSIPPAGFKPTPSIECLHMDFPVGNKCNNCLALPITSTYKEFQENMDFAIKNTLRLEKEENSHFSGH", "length": 659, "header": "tr|A0A287BIT9-1|A0A287BIT9_PIG Computationally mapped isoform of G2/M-phase specific E3 ubiquitin protein ligase OS=Sus scrofa OX=9823 GN=G2E3 PE=4 SV=1 CANONICAL=A0A287A5M6-1" }, "locus": { "chromosome": "7", "start_pos": 68895409, "end_pos": 68856697, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037099.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037099.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056059.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056059.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 615, "start_aa": "Thr", "end_pos": 615, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr615", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5M6", "url": "https://www.uniprot.org/uniprotkb/A0A287A5M6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A061HYC8-1", "protein_name": "G2/M phase-specific E3 ubiquitin-protein ligase isoform X1", "gene_name": "G2e3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNENKQDNSKNLACIFCRKNDDCPNKYGEKKTYEKWNFSVHYYCLLMSSGIWQRGKEEEGVYGFLVEDIRKEVNRASKLKCTVCKKNGASIGCVVPQCKRSYHLPCGLQKECIFQFTGNFASFCWKHRPVQVITSNKYRDTFQCTICLEYIEPIPTYNILLSPCCKNAWFHRDCLQVQAINAGVYFFRCTLCNNTDIFQKEMLRMGIHIPEKDASWELEENAYQELLQSHDRCDVRRCHCKKGRDYNEPNSKWEVKRCQCCGSSGTHLACSTLQSLEQNWECLDCRRITYNSDFRKAPKHPLANSTNVTVTDCLLEESSPKLPRQSAGAQHKELLRLKQEVQLSSTPCPSIKESCLTQRQGSKFRRDISTILLELGFQIKKKAKRLHINKANVWRSTLEQFQSQKFNPSYTIEVMYVSENDNLGREHPGSKQEFLSHLMQYLETSSLFEGSLSKNLTLNSQALKENLYYEAGKMVAISLVHGGTSPGFFSETLFNCLAYGPENTLPSLADVLDFDVAQIIIKINTAATINSLKSVVNECSSYLEFIGCLRLITSLNDKYTLVKDILFYHVIQRVQIPLESFKQGLKTLGVLEKIQTYPEVFYNILCRKPETLSAKSLSDLFTVHGLPDVQTLRFWKSYLQAVEDGTSATTMEDILVFTTGCRSVPPAGFKPPPSIECLHMDFPVGNKCSNSLALPIINTYKKFQENMDLTIKDTLRLEKEEGSPSLPWTLNVSSNEEMLL", "length": 740 }, "evidence": [ { "id": "A0A287A5M6", "url": "https://omabrowser.org/oma/group/A0A287A5M6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0XLZ1-1", "protein_name": "G2/M-phase specific E3 ubiquitin protein ligase", "gene_name": "G2E3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDGGRCEGRVPDFRNAGGCWGLNCPSVRAGGFSAGSPLDLVVGRAALGLEEFTRMSENNFDIQSPPCVLCGWTDNCPEKYGEKRTYVEYNLTLHNYCLLMSSGIWQRGEENEGVDGFLIEDIRKEVNRAARLMCNICRKKGASIGCVAPKCKRSYHFPCGLQKECVFQFMEDFRSYCWEHKPVQIFSDKESREPSQCTICLDLVEHLPLYSVLRSPCCKNTWFHRECLQYQALSAGIFFFRCAVCNNKDKFQKEMLRMGIHIPEKDASWELEDNAYQDLLQCYQHCDIRRCLCKNGRDYNKPDSKWEIKRCQSCGSRGTHLACSSIKSWEQNWECVECRSIFAKGKYSKRKKHSLAPSEKMDGTTCLLEEPSPKLPRQSPGSQRNCLLQSPKIICQNNLSPCSLLELPTSNRVAMSLSPLMSNRNCSLRKKHLRMQRKEASNILKELKQQINTKTTRLNINTENIWKSALKGFRQRNFRPTNTIEVKFTNCKNRVKTDSFTGSKHLFFHLLMLHIQNSSLFEGSSAKNLSVDPQALKENLYFEAGKMIAVSLVHGGPSPGFFSKILFDCLVYGPENVKPNLDDVADAGVAQTIKKIKYSESLSSLQSTVHDCYDFLAAAGCLRPITSLRDKDMLVNDLLIHHVIKRIISPLESFRQGLKTLGLLEKMEMHPDAFSSLFCHKPENLSAEALCDLFTIHSSTDVNKVGAADFWMGYLQDVESGESVVTLQDILFFVTGCSSIPPIGFDPEPTIKFLPVHYPIGNRLLNCLELPITRTYENFKNKMEFTIRNTLRGEKE", "length": 796 }, "evidence": [ { "id": "A0A287A5M6", "url": "https://omabrowser.org/oma/group/A0A287A5M6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZC11-1", "protein_name": "G2/M-phase specific E3 ubiquitin protein ligase", "gene_name": "G2e3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNENKPGNSQSLACVFCRKNDDCPNKYGEKKTCEKWNFSVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIRKEVNRASKLKCTVCKKNGASIGCVVPQCKRSYHLPCGLQKECIFQFTDNFASFCWKHRPVQAITSNKYRDSLPCTICLEFVEPIPTYNILQSPCCKNAWFHRDCLQVQAINAGVFFFRCTLCNNTDIFQKEMLRMGIHIPEKDASWELEENAYQELLQSHDRCDVRRCHCKEGREYNEPNSKWEIKRCQCCGSSGTHLACSSLQSWEKNWECLDCRRIAYTSDFQKAPKHPLANSTNVTVTDCLLEESSPKLPRQSTVAQQKELLSLKQEVQLSSTTCPSRKASCLTQRQGSKFRRDISTILIELGFQIKKKAKTLYINKANVWRSAVEQFQSQKFNPSYSIEVVYVNDNDEVGSKHPGSKQEFLSHLMHHLENSSVFEGSLAKNLSLNSQAVKENLYYEAGKMLAISLVHGGPSPGFFSETLFKCLAYGPENALPTLDDVSDLDVAQIIIKIDTAADLNILKSVINEYYNYLEFSGCLRLMTTLSDKYMLVKDILFYQVIKRVKAPFESFKQGLKTLGVLEKIQAYPEAFYNILCHKPESLSAKNLSDLFTIHKLPDVKTSRFWNSYLQAVEDGKSATTLEDILHFATGCSSVPPTGFKPAPSIECLHGDFPVANKCNNCLALPVTNTYEEFQENMDFAIRDSIRLEKEERSHLLPRTLNVSSNEEMLF", "length": 740 }, "evidence": [ { "id": "A0A287A5M6", "url": "https://omabrowser.org/oma/group/A0A287A5M6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5RJY2-1", "protein_name": "G2/M phase-specific E3 ubiquitin-protein ligase", "gene_name": "G2e3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNENKPDNSQSLACVFCRKNDDCPNKYGEKKTYEKWNFSVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIRKEVQRASKLKCTVCKKNGASIGCVVPTCKRSYHLPCGLQKECIFQFTDNFASFCWKHRPVQAITSNKYSSSLPCTICLEFVEPIPTYNILQSPCCKNAWFHRDCLQVQAINAGVFFFRCTLCNNTDIFQKEMLRMGIHIPEKDASWELEENAYQELLQSHDRCDIRRCHCKKGRDYNEPNSKWEVKRCQSCGSSGTHLACSSLQSWEQNWECLDCRRITYTSDFQKAPKHPLANSTNVTVTDCLLEESSSKLPRQSTVAQHKELLRQGSKFRRDISTILIELGFQIKKKTKTLYINKANVWRSALEQFQSQKFNPSCSIDVVYVNGNEVGSQHLGSKQEFLSHLMHHLENSSVFEGSLAKNLSLNSQAVKENLYYEVGKMLAISLVHGGPSPGFFSETLFNCLAYGPENTLPTLDDVSDIDVAQIIIKIDSATDLNILNSVISQHYNYLEVSGCLRLTTSLSDKFMLVKDILFYHVINRVKAPFESFKQGLKTLGVLEKIQTYPEAFYKILCHKPENLSAKNLSDLFTIHSVADVQTLRFWNSYLKAIEDGKSATTMEDILIFATGCSSVPPTGFKPSLSVECLHVDFPVADKYRNHLVLPATNTYEEFQENMDFTIRDTLRLEKEERSHILPRTLNVSSNEEMLI", "length": 716 }, "evidence": [ { "id": "A0A287A5M6", "url": "https://omabrowser.org/oma/group/A0A287A5M6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7L622-1", "protein_name": "G2/M phase-specific E3 ubiquitin-protein ligase", "gene_name": "G2E3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNFASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYERCDVRRCRCKEGRDYNAPDSKWEIKRCQCCGSSGTHLACSSLRSWEQNWECLECRGIIYNSGEFQKAKKHVLPNSNNVGITDCLLEESSPKLPRQSPGSQSKDLLRQGSKFRRNVSTLLIELGFQIKKKTKRLYINKANIWNSALDAFRNRNFNPSYAIEVAYVIENDNFGSEHPGSKQEFLSLLMQHLENSSLFEGSLSKNLSLNSQALKENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPENTQPILDDVSDFDVAQIIIRINTATTVADLKSIINECYNYLELIGCLRLITTLSDKYMLVKDILGYHVIQRVHTPFESFKQGLKTLGVLEKIQAYPEAFCSILCHKPESLSAKILSELFTVHTLPDVKALGFWNSYLQAVEDGKSTTTMEDILIFATGCSSIPPAGFKPTPSIECLHVDFPVGNKCNNCLAIPITNTYKEFQENMDFTIRNTLRLEKEESSHYIGH", "length": 706 }, "evidence": [ { "id": "A0A287A5M6", "url": "https://omabrowser.org/oma/group/A0A287A5M6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8AW58-1", "protein_name": "2.3.2.26", "gene_name": "g2e3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKALNEKSAEIKLQDRDLICCLCKRSENNKEKYGEKVHLEQHNLAVHFFCLLMSSGICQRGEEDEDVYGFLVGDIKKEIRRSSRLRCFHCKKAGASVGCSIKSCRQMVHMPCGLEQEFVFQFTGLFPSFCKKHAPTQSCDSSHSLPHSCSICLDPIEPILSYHVLKCPACHGSWFHRKCVQNYAHSAAMFFFKCTLCNNKEQFQQEMLRMGIYIPERDASWELEENAFVELLQVYHRCDAVKCLCHKGREHSSQSGYFEIVLCKLCGSRGTHRKCSNIRVYEADWMCADCKTAAEGKTSLPLPNHVESPLAIRQERKRLFKSISDIHSSIVAKRQCVPATSPEVLMDLACQISQQQFTEVLVGDDDGGVMEAALQVLRQSDFNPCCTLSVKFSKDKLNNNIRNQRRFLRRLVSKLQVSDIFEGSDGAKNLALNSKALRDDLYFDVGSLLALSLVHGGPPLGFFSPALYHSLFNYPKNYRPTLEDLGDTAFGHKIRQIAEAKSMKELRHAMKSASQYLEAAGCWRKISKLSEKDMLVEDVLNFYLIIRLQLPLQRFREGLRTLGMFEQVQMCSETFFPVFCGPVERLTAESVMELFTTRLSEEKEKQVLEKTTISFWKQYLHECEEGQCAASLEDLLTFATGTDLVPAIGFKPTPSISFLSSPDNLCAFPQSNCDANHLILPTLPSYQLFKKHLDYTVCQFSVMQDI", "length": 706 }, "evidence": [ { "id": "A0A287A5M6", "url": "https://omabrowser.org/oma/group/A0A287A5M6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "pericentric heterochromatin formation", "id": "GO:0031508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031508", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5M6", "url": "https://www.uniprot.org/uniprotkb/A0A287A5M6" } ], "pmid": "" }, { "name": "protein localization to condensed nuclear chromosome", "id": "GO:1903084", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903084", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5M6", "url": "https://www.uniprot.org/uniprotkb/A0A287A5M6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5M6", "url": "https://www.uniprot.org/uniprotkb/A0A287A5M6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5M6", "url": "https://www.uniprot.org/uniprotkb/A0A287A5M6" } ], "pmid": "" }, { "name": "pericentric heterochromatin", "id": "GO:0005721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005721", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5M6", "url": "https://www.uniprot.org/uniprotkb/A0A287A5M6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5M6", "url": "https://www.uniprot.org/uniprotkb/A0A287A5M6" } ], "pmid": "" }, { "name": "histone H3K14 ubiquitin ligase activity", "id": "GO:0140851", "url": 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"url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102165847", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102165847", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XII5-1", "protein_name": "C2H2-type domain-containing protein", "gene_name": "LOC426821", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEEQPASPASDSPFSLQRVCISEDEPEDEEQEETPEEDTTQVQMEEGSLKQDRIGSPRCSVRCWQGCDSLIPQGTESPGQRVGEEPEELQPCRKHQLNLKSKTSLVPTSPGEGERAEEPGPSRGKRLHLIWGQSSDFRWKKNLGENRLEEAPMLPQSSEEEEEEGKASRSCSPEPPPHGDARPKPDFVQLIDEHGIYSTAKLVLGSAAGELEEAAVVLPPHLKRGTSGAAEFEIREVIVDEKPFQCGVCEKAFKRAWELFSHEVVHNEERPFRCDLCEASFKRHSDFKSHRLVHTEERPFRCELCGKRFKRSSNLQEHRRIHTGERPFHCACCDKSFKTPYELQRHTLTHCTEKPFKCADCGKDFPTSNALLLHQRQHCDDKPHVCGVCGKKFTYGHSLKVHERVHTGDRPFVCPLCGKGFKQSNALSSHERVHTGERPFVCKTCGKAFKQSSYLVIHERAHTGERPYKCEACGKAFARPSLLLQHHRVHSQERPYKCSFCHKFFKDLAYLAVHEKVHTGETPYKCSVCDKGFAHPSNLLQHQRVHRDG", "length": 549 }, "evidence": [ { "id": "A0A287A5Z1", "url": "https://omabrowser.org/oma/group/A0A287A5Z1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5Z1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5Z1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5Z1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5Z1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5Z1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5Z1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A5Z1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z1" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 97, "end_pos": 124, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A5Z3-1", "uniprot_ac": "A0A287A5Z3", "uniprot_id": "A0A287A5Z3_PIG", "mass": { "chemical_mass": 71662.0, "monoisotopic_mass": 71662.0 }, "refseq": { "ac": "XP_020941255", "name": "endoplasmic reticulum membrane-associated RNA degradation protein isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941255" }, "gene_names": [ { "name": "ERMARD", "type": "recommended", "evidence": [ { "id": "A0A287A5Z3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z3" } ] }, { "name": "ERMARD", "type": "synonym", "evidence": [ { "id": "XP_020941255", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941255" } ] } ], "protein_names": [ { "name": "ER membrane associated RNA degradation", "type": "synonym", "evidence": [ { "id": "A0A287A5Z3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z3/entry#names_and_taxonomy" } ] }, { "name": "endoplasmic reticulum membrane-associated RNA degradation protein isoform X5", "type": "synonym", "evidence": [ { "id": "XP_020941255", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941255" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A5Z3", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ERMARD", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z3", "locus": { "chromosome": "1", "start_pos": 512678, "end_pos": 540896, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004010", "url": "https://www.ensembl.org/id/ENSSSCG00000004010" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004010", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004010", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512199", "url": "https://www.ncbi.nlm.nih.gov/gene/100512199", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025209", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025209", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039635", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039635", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31701", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31701", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31701:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31701:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13910", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13910", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020941255", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941255", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A5Z3", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5Z3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AH30", "url": "https://www.uniprot.org/uniprotkb/A0A287AH30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AH30-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH30-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC01", "url": "https://www.uniprot.org/uniprotkb/F1SC01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC01-1", "url": "https://www.uniprot.org/uniprotkb/F1SC01-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVTFVGRQLQTVWFTQNQGLDYGGSVRLLGPVCEAVHLHLSSLTKEQFEIRYAPWLQWTGAPELFPEVFAALGSLQPPAVSLSLMKLTSCLERALGDVHLLTGKECPFLLRDLLASDELAQVFGPSVMDVLRVFLGSPRGLNLRNVLWHGFAAPHEIPPKYCSTVLLLAAGLGQLLKGYLQQTHLTLAHRPFTALANLEDLVVFPDVTCEVLSALEEVMKKSTFILKIMLPYWEVALIKFKSHRFADCAMLLLMQLETGLRNVFASVNKCPKRLLTAESTALYTTFDEILAKHLNDGQINQLPLLLGEPAMEFLWDFLNYPEGPRVRDRLSHGEIHLPEFPKAATNQLLAFSFVLLLRFIDEDLLSVFKEKAAVEALISLADGYAARCHPVSQLKRQVLSCEESIRLWPLLPLPEGAGREAPRPEGDSETTACSSLMTDIMTELCGHVPETHRSARGPDGLAPEQWPQLLRDLCHVRVRTLFCPRAALEVLALLRRISASCHLVSGQVATSAELWHRQWEDRALRSRQRQTYLRLTRSIKLLSPMLYLILLLIALELVNIHLVHGKNTLEYQQYLRFLKSVLRYTENLATYTSQEKNKWGESVDLTHAALLKIWTFSEKKQMLMHLAKKSTSKVV", "length": 635, "header": "tr|A0A287A5Z3-1|A0A287A5Z3_PIG Isoform 1 of ER membrane associated RNA degradation OS=Sus scrofa OX=9823 GN=ERMARD PE=4 SV=2 CANONICAL=A0A287A5Z3-1" }, "isoforms": [ { "isoform_ac": "A0A287A5Z3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z3/entry#A0A287A5Z3-1", "sequence": { "sequence": "MVTFVGRQLQTVWFTQNQGLDYGGSVRLLGPVCEAVHLHLSSLTKEQFEIRYAPWLQWTGAPELFPEVFAALGSLQPPAVSLSLMKLTSCLERALGDVHLLTGKECPFLLRDLLASDELAQVFGPSVMDVLRVFLGSPRGLNLRNVLWHGFAAPHEIPPKYCSTVLLLAAGLGQLLKGYLQQTHLTLAHRPFTALANLEDLVVFPDVTCEVLSALEEVMKKSTFILKIMLPYWEVALIKFKSHRFADCAMLLLMQLETGLRNVFASVNKCPKRLLTAESTALYTTFDEILAKHLNDGQINQLPLLLGEPAMEFLWDFLNYPEGPRVRDRLSHGEIHLPEFPKAATNQLLAFSFVLLLRFIDEDLLSVFKEKAAVEALISLADGYAARCHPVSQLKRQVLSCEESIRLWPLLPLPEGAGREAPRPEGDSETTACSSLMTDIMTELCGHVPETHRSARGPDGLAPEQWPQLLRDLCHVRVRTLFCPRAALEVLALLRRISASCHLVSGQVATSAELWHRQWEDRALRSRQRQTYLRLTRSIKLLSPMLYLILLLIALELVNIHLVHGKNTLEYQQYLRFLKSVLRYTENLATYTSQEKNKWGESVDLTHAALLKIWTFSEKKQMLMHLAKKSTSKVV", "length": 635, "header": "tr|A0A287A5Z3-1|A0A287A5Z3_PIG Isoform 1 of ER membrane associated RNA degradation OS=Sus scrofa OX=9823 GN=ERMARD PE=4 SV=2 CANONICAL=A0A287A5Z3-1" }, "locus": { "chromosome": "1", "start_pos": 537899, "end_pos": 513496, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037459.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037459.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039361.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039361.2" } ] } }, { "isoform_ac": "A0A287AH30-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z3/entry#A0A287AH30-1", "sequence": { "sequence": "MVTFVGRQLQTVWFTQNQGLDYGGSVRLLGPVCEAVHLHLSSLTKEQFEIRYAPWLQWTGAPELFPEVFAALGSLQPPAVSLSLMKLTSCLERALGDVHLLTGKECPFLLRDLLASDELAQVFGPSVMDVLRVFLGSPRGLNLRNVLWHGFAAPHEIPPKYCSTVLLLAAGLGQLLKGYLQQTHLTLAHRPFTALANLEDLVVFPDVTCEVLSALEEVMKKSTFILKIMLPYWEVALIKFKSHRFADCAMLLLMQLETGLRNVFASVNKCPKRLLTAEILAKHLNDGQINQLPLLLGEPAMEFLWDFLNYPEGPRVRDRLSHGEIHLPEFPKAATNQLLAFSFVLLLRFIDEDLLSVFKEKAAVEALISLADGYAARCHPVSQLKRQVLSCEESIRLWPLLPLPEGAGREAPRPEGDSETTACSSLMTDIMTELCGHVPETHRSARGPDGLAPEQWPQLLRDLCHVRVRTLFCPRAALEVLALLRRISASCHLVSGQVATSAELWHRQWEDRALRSRQRQTYLRLTRSIKLLSPMLYLILLLIALELVNIHLVHGKNTLEYQQYLRFLKSVLRYTENLATYTSQEKNKWGESVDLTHAALLKIWTFSEKKQMLMHLAKKSTSKVV", "length": 625, "header": "tr|A0A287AH30-1|A0A287AH30_PIG Computationally mapped isoform of ER membrane associated RNA degradation OS=Sus scrofa OX=9823 GN=ERMARD PE=4 SV=1 CANONICAL=A0A287A5Z3-1" }, "locus": { "chromosome": "1", "start_pos": 537899, "end_pos": 513496, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040859.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040859.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043287.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043287.1" } ] } }, { "isoform_ac": "F1SC01-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z3/entry#F1SC01-1", "sequence": { "sequence": "MICKLGFEVRDSCDICSIVTQNGDICWKTITDCVVYTESAQGLDYGGSVRLLGPVCEAVHLHLSSLTKEQFEIRYAPWLQWTGAPELFPEVFAALGSLQPPAVSLSLMKLTSCLERALGDMDVLRVFLGSPRGLNLRNVLWHGFAAPHEIPPKYCSTVLLLAAGLGQLLKGYLQQTHLTLAHRPFTALANLEDLVVFPDVTCEVLSALEEVMKKSTFILKIMLPYWEVALIKFKSHRFADCAMLLLMQLETGLRNVFASVNKCPKRLLTAESTALYTTFDEILAKHLNDGQINQLPLLLGEPAMEFLWDFLNYPEGPRVRDRLSHGEIHLPEFPKAATNQLLAFSFVLLLRFIDEDLLSVFKEKAAVEALISLADGYAARCHPVSQLKRQVLSCEESIRLWPLLPLPEGAGREAPRPEGDSETTACSSLMTDIMTELCGHVPETHRSARGPDGLAPEQWPQLLRDLCHVRVRTLFCPRAALEVLALLRRISASCHLVSGQVATSAELWHRQWEDRALRSRQRQTYLRLTRSIKLLSPMLYLILLLIALELVNIHLVHGKNTLEYQQYLRFLKSVLRYTENLATYTSQEKNKWGESVDLTHAALLKIWTFSEKKQMLMHLAKKSTSKVV", "length": 628, "header": "tr|F1SC01-1|A0A287A5Z3_PIG 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"https://www.ensembl.org/id/ENSSSCG00000032488" } ] } } ], "crossref": [ { "id": "ENSSSCG00000032488", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032488", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08250", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08250", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR011032", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011032", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VDMSYSR", "url": "https://omabrowser.org/oma/group/VDMSYSR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A6F5", "url": "https://www.orthodb.org/?gene=A0A287A6F5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43677", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43677", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43677:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43677:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "11912", "url": "https://www.rhea-db.org/rhea/11912", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "50584", "url": "https://www.rhea-db.org/rhea/50584", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "50588", "url": "https://www.rhea-db.org/rhea/50588", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "50592", "url": "https://www.rhea-db.org/rhea/50592", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A6F5", "url": "https://www.uniprot.org/uniprotkb/A0A287A6F5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6F5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6F5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMRLALAGARAIVDMSYARHFLDFQGSAIPRAMQKLVVTRLSPNFREAVTLRRDCPVPLPGDGDLLVRNRFVGINASDINYSAGRYDPSVKIPFDVGFEGVGEVVALGLSASAKYSVGQAVAYMAPGSFAEYTVVPARMAIPVPSVKPEYLTLLVSGTTAYISLKELGGLSEGRKVLVTAAAGGTGQFAVQLAKKAKCHVIGTCSSDEKAAFLKSLGCDRPINYNAEQVGAILQQEYPRGVDVVYESVGGAMFDVAVKALAIKGRLIVIGFLSGYQTPTGLLPVKAETLPATLLKKSASIQGFFLNHYLPEYQAAMDHLLKMYSGGELVCEVDLGHLSAEGRFIGLESVFRAVDYMYTRKNTGKIVVELPHSVNSKL", "length": 377, "header": "tr|A0A287A6F5-1|A0A287A6F5_PIG Isoform 1 of 15-oxoprostaglandin 13-reductase OS=Sus scrofa OX=9823 GN=PTGR3 PE=1 SV=1 CANONICAL=A0A287A6F5-1" }, "isoforms": [ { "isoform_ac": "A0A287A6F5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6F5/entry#A0A287A6F5-1", "sequence": { "sequence": "MMRLALAGARAIVDMSYARHFLDFQGSAIPRAMQKLVVTRLSPNFREAVTLRRDCPVPLPGDGDLLVRNRFVGINASDINYSAGRYDPSVKIPFDVGFEGVGEVVALGLSASAKYSVGQAVAYMAPGSFAEYTVVPARMAIPVPSVKPEYLTLLVSGTTAYISLKELGGLSEGRKVLVTAAAGGTGQFAVQLAKKAKCHVIGTCSSDEKAAFLKSLGCDRPINYNAEQVGAILQQEYPRGVDVVYESVGGAMFDVAVKALAIKGRLIVIGFLSGYQTPTGLLPVKAETLPATLLKKSASIQGFFLNHYLPEYQAAMDHLLKMYSGGELVCEVDLGHLSAEGRFIGLESVFRAVDYMYTRKNTGKIVVELPHSVNSKL", "length": 377, "header": "tr|A0A287A6F5-1|A0A287A6F5_PIG Isoform 1 of 15-oxoprostaglandin 13-reductase OS=Sus scrofa OX=9823 GN=PTGR3 PE=1 SV=1 CANONICAL=A0A287A6F5-1" }, "locus": { "chromosome": "1", "start_pos": 148995067, "end_pos": 148987603, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061684.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061684.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039344.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039344.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6F5", "url": "https://www.uniprot.org/uniprotkb/A0A287A6F5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X9H6-1", "protein_name": "15-oxoprostaglandin 13-reductase", "gene_name": "ZADH2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSWRRAPRCCWRRAAPGPACSAAGGRRPILDMSYSRHFLDFQGSSIPTAMKKLVVTALSPNFRQAVTLRRDAPVPLPGDGELLVRNRFVGINASDINYSAGRYDTSVKPPFDVGFEGIGDVVALGLSASAHYSVGQAVAYVKAGSFAEYTVVPAKEAVPLPSVKPEFLTLMVSGATAYISLKNLGGLSEGKKVLVTAAAGGTGQFAVQLAKKAKCHVIGTCSSDEKSGFLKSIGCDHVINYKTENVESVLRKDYPEGVDVVYESVGGKMFDLAVNSLATKGRLIVIGFIAGYQNPTGTQPIKAEFLPAKLLKKSASVQGFFLNHYFSEYKMALQHLLKMYEKGELVCEVDLGDLSPEGKFIGLESVFRAVDYMYMGKNIGKIVVELPHSVNSKL", "length": 394 }, "evidence": [ { "id": "A0A287A6F5", "url": "https://omabrowser.org/oma/group/A0A287A6F5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A264-1", "protein_name": "15-oxoprostaglandin 13-reductase", "gene_name": "Ptgr3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A287A6M4-1" }, "locus": { "chromosome": "9", "start_pos": 3732915, "end_pos": 3731978, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065567.1", "url": "https://www.ensembl.org/id/ENSSSCT00000065567.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039416.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039416.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6M4", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6M4", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6M4", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6M4", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A6M4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 285, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A6M4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A6M4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A6M4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M4" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 266, "start_aa": "Met", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 }, { "start_pos": 44, "end_pos": 46 }, { "start_pos": 6, "end_pos": 8 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A6M7-1", "uniprot_ac": "A0A287A6M7", "uniprot_id": "A0A287A6M7_PIG", "mass": { "chemical_mass": 52695.0, "monoisotopic_mass": 52695.0 }, "refseq": { "ac": "XP_020924639", "name": "zinc finger and BTB domain-containing protein 43", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924639" }, "gene_names": [ { "name": "ZBTB43", "type": "recommended", "evidence": [ { "id": "A0A287A6M7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M7" } ] }, { "name": "ZBTB43", "type": "synonym", "evidence": [ { "id": "XP_020924639", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924639" } ] } ], "protein_names": [ { "name": "Zinc finger and BTB domain-containing protein 43", "type": "recommended", 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[ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627923", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627923", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IEMVAGI", "url": "https://omabrowser.org/oma/group/IEMVAGI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A6M7", "url": "https://www.orthodb.org/?gene=A0A287A6M7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46105", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46105:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020924639", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924639", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A6M7", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6M7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1GZ00", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GZ00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1GZ00-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GZ00-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPGTNSFRVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHIFRAHKAVLAASSPYFCDQVLLKNSRRIVLPDVMNPRVFENILLSSYTGRLVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPTVLCQKLNHGSDHQSPSSSSYNGLVESFELGSGGHTDFPKAQELRDGENEEESTKDELSSQLTEHEYLPSNSSTEHDRLSTEMASQDGEEGASDSAEFHYTRPMYSKPSIMAHKRWIHVKPERFEQACEGMDVHAPYDEHQVTESINTMQTEHSVQPSGVEEDFHIGEKKVEAEFDEQADESNYDEQVDFYGSSMEEFSGERSDGNLIGHRQEAALASGYTENIEMVTGIKEEASHLGFSASDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEAN", "length": 467, "header": "tr|A0A287A6M7-1|A0A287A6M7_PIG Isoform 1 of Zinc finger and BTB domain-containing protein 43 OS=Sus scrofa OX=9823 GN=ZBTB43 PE=3 SV=1 CANONICAL=A0A287A6M7-1" }, "isoforms": [ { "isoform_ac": "A0A287A6M7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M7/entry#A0A287A6M7-1", "sequence": { "sequence": "MEPGTNSFRVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHIFRAHKAVLAASSPYFCDQVLLKNSRRIVLPDVMNPRVFENILLSSYTGRLVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPTVLCQKLNHGSDHQSPSSSSYNGLVESFELGSGGHTDFPKAQELRDGENEEESTKDELSSQLTEHEYLPSNSSTEHDRLSTEMASQDGEEGASDSAEFHYTRPMYSKPSIMAHKRWIHVKPERFEQACEGMDVHAPYDEHQVTESINTMQTEHSVQPSGVEEDFHIGEKKVEAEFDEQADESNYDEQVDFYGSSMEEFSGERSDGNLIGHRQEAALASGYTENIEMVTGIKEEASHLGFSASDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEAN", "length": 467, "header": "tr|A0A287A6M7-1|A0A287A6M7_PIG Isoform 1 of Zinc finger and BTB domain-containing protein 43 OS=Sus scrofa OX=9823 GN=ZBTB43 PE=3 SV=1 CANONICAL=A0A287A6M7-1" }, "locus": { "chromosome": "1", "start_pos": 267409642, "end_pos": 267408242, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053979.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053979.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056122.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056122.2" } ] } }, { "isoform_ac": "A0A8D1GZ00-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M7/entry#A0A8D1GZ00-1", "sequence": { "sequence": "MEPGTNSFRVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHIFRAHKAVLAASSPYFCDQVLLKNSRRIVLPDVMNPRVFENILLSSYTGRLVMPAPEIVLEGNPTVLCQKLNHGSDHQSPSSSSYNGLVESFELGSGGHTDFPKAQELRDGENEEESTKDELSSQLTEHEYLPSNSSTEHDRLSTEMASQDGEEGASDSAEFHYTRPMYSKPSIMAHKRWIHVKPERFEQACEGMDVHAPYDEHQVTESINTMQTEHSVQPSGVEEDFHIGEKKVEAEFDEQADESNYDEQVDFYGSSMEEFSGERSDGNLIGHRQEAALASGYTENIEMVTGIKEEASHLGFSASDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEAN", "length": 446, "header": "tr|A0A8D1GZ00-1|A0A287A6M7_PIG Computationally mapped isoform of Zinc finger and BTB domain-containing protein 43 OS=Sus scrofa OX=9823 GN=ZBTB43 PE=3 SV=1 CANONICAL=A0A287A6M7-1" }, "locus": { "chromosome": "1", "start_pos": 267409642, "end_pos": 267408242, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078886.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078886.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067796.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067796.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1GZ00", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GZ00" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627923", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627923", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AFN4-1", "protein_name": "Zinc finger and BTB domain containing 43", "gene_name": "Zbtb43", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPGTNSFQVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHIFQAHKAVLAASSPYFCDQVLLKNSRRIVLPDVMNPRVFENILLFSYTGRLVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPTVLCQKLNHGSDHQSPSSSNYNGLAESFELGSGGHTDFPKAQELRDGENEEESTKDELSSQVTEHEYLPSNSSTEHDRLSTEMASQDGEEGTNDSTEFHYTRPLYSKPSIMPHRRWIHVKPERLEQPWDGMDVHAAYDEHQVSESVNTMQTDHSAQPSGAEEEFQIVEKKVEVEFDEHAEGSNYDEQVDFYGSSMEEFSGEKLGGGLIGHKQETALAAGYSENIEMVMGIKEEASHLGFSATDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCSVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAGQNTTEAN", "length": 467 }, "evidence": [ { "id": "A0A287A6M7", "url": "https://omabrowser.org/oma/group/A0A287A6M7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1C5C9-1", "protein_name": "Zinc finger and BTB domain-containing protein 43", "gene_name": "ZBTB43", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MESGSSSFRVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHLFRAHKAVLAASSPYFCDQVLLKNSRRIVLPDVMNPRVFENILLSTYTGRLVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPTVLCQKMNHGSDHQSPSSSSYNGLAETFELGSGGQTEFHKVQELRDGENEEESSKDELSCQLTEHEYLPSNSSTEHDRLSTGMTSQDGEEGTSDSAEYQYTRPIYSKPSIMSHKRWIHVKPERFEQDCEGVDNPYDEHQVSESMNAIQADHSIQSSGVEDFHIADKKMEAEFDEQADESNYDEQVDFYGSSMEEFSGERADGNLSAHRQDLMIATGYGEGIEMAAGIKEETSLTGFSHADKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICGKRFMWRDSFHRHVTSCTKSYQASKAEQSTTEMN", "length": 464 }, "evidence": [ { "id": "A0A287A6M7", "url": "https://omabrowser.org/oma/group/A0A287A6M7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O43298-1", "protein_name": "Zinc finger and BTB domain-containing protein 43", "gene_name": "ZBTB43", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPGTNSFRVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHIFRAHKAVLAASSPYFCDQVLLKNSRRIVLPDVMNPRVFENILLSSYTGRLVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPTVLCQKLNHGSDHQSPSSSSYNGLVESFELGSGGHTDFPKAQELRDGENEEESTKDELSSQLTEHEYLPSNSSTEHDRLSTEMASQDGEEGASDSAEFHYTRPMYSKPSIMAHKRWIHVKPERLEQACEGMDVHATYDEHQVTESINTVQTEHTVQPSGVEEDFHIGEKKVEAEFDEQADESNYDEQVDFYGSSMEEFSGERSDGNLIGHRQEAALAAGYSENIEMVTGIKEEASHLGFSATDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEAN", "length": 467 }, "evidence": [ { "id": "A0A287A6M7", "url": "https://omabrowser.org/oma/group/A0A287A6M7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DAI4-1", "protein_name": "Zinc finger and BTB domain-containing protein 43", "gene_name": "Zbtb43", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPGTNSFQVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHIFQAHKAVLAASSPYFCDQVLLKNSRRIVLPDVMNPRVFENILLFSYTGRLVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPTVLCQKLNHGSDHQSPSSSNYNGLVESFELGSGGHTDFPKAQELRDGENEEESTKDELSSQVTEHEYLPSNSSTEHDRLSTEMASQDGEEGTNDSTEFHYTRPLYSKPSIMAHRRWIHVKPERLEQAWDGMDVHAAYDEHQVTESVNTMQTDHSAQPSGAEEEFQIVEKKVEVEFDEQAEGSSYDEQVDFYGSSMEEFSGEKLGGNLIGHKQEAALAAGYSENIEMAMGIKEEASHLGFSATDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCSVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEAN", "length": 467 }, "evidence": [ { "id": "A0A287A6M7", "url": "https://omabrowser.org/oma/group/A0A287A6M7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6M7", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6M7", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M7" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6M7", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6M7", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A6S5-1", "uniprot_ac": "A0A287A6S5", "uniprot_id": "A0A287A6S5_PIG", "mass": { "chemical_mass": 18924.0, "monoisotopic_mass": 18924.0 }, "refseq": { "ac": "XP_020936001", "name": "zinc finger CCHC domain-containing protein 13", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936001" }, "gene_names": [ { "name": "ZCCHC13", "type": "recommended", "evidence": [ { "id": "A0A287A6S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S5" } ] }, { "name": "ZCCHC13", "type": "synonym", "evidence": [ { "id": "XP_020936001", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936001" } ] } ], "protein_names": [ { "name": "Zinc finger CCHC-type containing 13", "type": "synonym", "evidence": [ { "id": "A0A287A6S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S5/entry#names_and_taxonomy" } ] }, { "name": "zinc finger CCHC domain-containing protein 13", "type": "synonym", "evidence": [ { "id": "XP_020936001", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936001" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S5", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZCCHC13", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S5", "locus": { "chromosome": "X", "start_pos": 59614511, "end_pos": 59613996, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035737", "url": "https://www.ensembl.org/id/ENSSSCG00000035737" } ] } } ], "crossref": [ { "id": "A0A287A6S5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A6S5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035737", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035737", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154211", "url": "https://www.ncbi.nlm.nih.gov/gene/100154211", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154211", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154211", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DCTQVKC", "url": "https://omabrowser.org/oma/group/DCTQVKC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A6S5", "url": "https://www.orthodb.org/?gene=A0A287A6S5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47103:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47103:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020936001", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936001", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A6S5", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNKECFKCGRSGHWARGCPKGGGARGRGSRGRGRGPHCSSTTLPIICYRCGEPGHHAKNCDLQEDICYNCGKSGHIAKDCMEPKRERDQCCYTCGRPGHLARDCDRQEEQKCYSCGERGHIQKDCTQVRCYRCGETGHVAINCSKPSEVNCYRCGESGHLARECPIETTT", "length": 171, "header": "tr|A0A287A6S5-1|A0A287A6S5_PIG Isoform 1 of Zinc finger CCHC-type containing 13 OS=Sus scrofa OX=9823 GN=ZCCHC13 PE=4 SV=1 CANONICAL=A0A287A6S5-1" }, "isoforms": [ { "isoform_ac": "A0A287A6S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S5/entry#A0A287A6S5-1", "sequence": { "sequence": "MSNKECFKCGRSGHWARGCPKGGGARGRGSRGRGRGPHCSSTTLPIICYRCGEPGHHAKNCDLQEDICYNCGKSGHIAKDCMEPKRERDQCCYTCGRPGHLARDCDRQEEQKCYSCGERGHIQKDCTQVRCYRCGETGHVAINCSKPSEVNCYRCGESGHLARECPIETTT", "length": 171, "header": "tr|A0A287A6S5-1|A0A287A6S5_PIG Isoform 1 of Zinc finger CCHC-type containing 13 OS=Sus scrofa OX=9823 GN=ZCCHC13 PE=4 SV=1 CANONICAL=A0A287A6S5-1" }, "locus": { "chromosome": "X", "start_pos": 59614508, "end_pos": 59613996, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037898.1", "url": "https://www.ensembl.org/id/ENSSSCT00000037898.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039513.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039513.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6S5", "url": "https://www.uniprot.org/uniprotkb/A0A287A6S5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154211", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154211", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7H380-1", "protein_name": "Zinc finger CCHC domain-containing protein 13", "gene_name": "Zcchc13", "tax_id": 10029, 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"database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43245", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43245", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43245:SF51", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43245:SF51", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01073", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01073", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013846797", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013846797", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A6U6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6U6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6U6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6U6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSPRSPKETVLITGGGGYFGFRLGCALNQKGLRVILFDVSSPAHTIPEGVKFIRGDIRLLADVERAFEDADVTCVFHIASYGMSGREQLNRSRIEDVNVGGTDNVLQACRSRGVPRLVYTSTFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSVAEKKVLEANGTALARRAGVLRTCALRPAGIYGPGEQRHLPRIVSYLEKGLFRFVYGDPKSLVEFVHVDNLVQAHILASEALKADKGHVASGQPYFISDGRPVNNFEFFRPLVEGLGYKFPSVRLPLPLIYFFAFLTEMAYFLLGRLYNFQPFLTRTEVYKTAVTHYFSLEKAKKELGYEAQPFDLQEVVEWFKAHGHGRSPGRQDSEFSLVWYGLLVSLLIIAVLTWLPPSVILSL", "length": 394, "header": "tr|A0A287A6U6-1|A0A287A6U6_PIG Isoform 1 of Short chain dehydrogenase/reductase family 42E, member 1 OS=Sus scrofa OX=9823 GN=SDR42E1 PE=3 SV=1 CANONICAL=A0A287A6U6-1" }, "isoforms": [ { "isoform_ac": "A0A287A6U6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6U6/entry#A0A287A6U6-1", "sequence": { "sequence": "MDSPRSPKETVLITGGGGYFGFRLGCALNQKGLRVILFDVSSPAHTIPEGVKFIRGDIRLLADVERAFEDADVTCVFHIASYGMSGREQLNRSRIEDVNVGGTDNVLQACRSRGVPRLVYTSTFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSVAEKKVLEANGTALARRAGVLRTCALRPAGIYGPGEQRHLPRIVSYLEKGLFRFVYGDPKSLVEFVHVDNLVQAHILASEALKADKGHVASGQPYFISDGRPVNNFEFFRPLVEGLGYKFPSVRLPLPLIYFFAFLTEMAYFLLGRLYNFQPFLTRTEVYKTAVTHYFSLEKAKKELGYEAQPFDLQEVVEWFKAHGHGRSPGRQDSEFSLVWYGLLVSLLIIAVLTWLPPSVILSL", "length": 394, "header": "tr|A0A287A6U6-1|A0A287A6U6_PIG Isoform 1 of Short chain dehydrogenase/reductase family 42E, member 1 OS=Sus scrofa OX=9823 GN=SDR42E1 PE=3 SV=1 CANONICAL=A0A287A6U6-1" }, "locus": { "chromosome": "6", "start_pos": 6397871, "end_pos": 6395729, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053715.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053715.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039696.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039696.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6U6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6U6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625092", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625092", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JT58-1", "protein_name": "Short chain dehydrogenase/reductase family 42E, member 1", "gene_name": "Sdr42e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSPRFPEETVLITGGGGYFGFRLGCALNQKGVRVILFDIIEPAQNLPEGITFVRGDIRCLSDVEAAFQDADIACVFHIASYGMSGREQLNKTRIEEVNVGGTENILQACLGRGVPSLVYTSTFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLEANGLAFKQGDGVLRTCAIRPAGIYGAGEQRHLPRVVSYIERGLFRFVYGDPQSLVEFVHVDNLAKAHILASEALKADKGHIASGQPYFISDGRPVNNFEFFRPLVEGLGYTFPTTRLPLTLIYYFAFLIEMTHLIVGRLYNFQPFLTCTEVYKTGVTHYFSLEKAKSELGYAPQPFDLQEVVEWFKAHGHGRRPRGQDSEFILWDGILVLLLAFSVLTWIPPSTILSL", "length": 393 }, "evidence": [ { "id": "A0A287A6U6", "url": "https://omabrowser.org/oma/group/A0A287A6U6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A3L7HUK5-1", "protein_name": "Short-chain dehydrogenase/reductase family 42E member 1", "gene_name": "Sdr42e1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDSPRFSEETVLITGGGGYFGFRLGCALNQKGVRVILFDISQPAQNLPEGIRFIRGDICCLSDVEMAFRDTDIACVFHVASYGMSGREQLNKTLIEEVNVGGTNNILQTCLERGVPRLVYTSTVNVVFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLEADGSAFKQGNGVLRTCALRPAGIYGVGEQRHLPRIVSYIERGLFRFIFGDPNSLVEFVHVDNLVKAHILASEALKADKGHVASGQPYFISDGRPVNNFEFFRPLVEGLGYTFPSIRLPFTLIYCFAFLVEMTHFILSRLYNFQPFLTRTEVYKTGVTHYFSLEKAKKELGYEPQPFDLQEVVEWFKVQGHGRRSGGQDSEFILWDGILVLLLALSLLTWFPPSTVLNL", "length": 393 }, "evidence": [ { "id": "A0A287A6U6", "url": "https://omabrowser.org/oma/group/A0A287A6U6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0Y0K1-1", "protein_name": "Short chain dehydrogenase/reductase family 42E, member 1", "gene_name": "SDR42E1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAGSSAKETVLITGGGGYFGFRLGCTIYKKGVDVILFDVTKPLQPVPEGIKFMQGNVCCLAEVEEALKDVICVFHIASYGMSGREQLNRKLIEDVNVKGTENVIQACKSTGVSSLVYTSTYNVIFGGQIIENGDESLPYLPLHLHPDHYSRTKSLAEMKVLKANGTELGNGKGVLRTCALRPAGIYGPGEQRHLPRIVSYIERGLFKFVYGDPLSLVEFVHVDNLVQAHILAFEALKANKKHIAAGQAYFISDGRPVNNFEFFRPLVEGLGYKFPTCRLPLSLVYFFAFLTEVVHLLVGHVYNFQPLLTRTEVYKTGVTHYFSMEKARKELGYEPQKYSLNEVVEWFRSQGCGPKPRKYTITHLLRDGGLLLLFIAVLVSWFPPAVIFSP", "length": 391 }, "evidence": [ { "id": "A0A287A6U6", "url": "https://omabrowser.org/oma/group/A0A287A6U6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A8DZE7-1", "protein_name": "Short-chain dehydrogenase/reductase family 42E member 1", "gene_name": "sdr42e1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEVNRKDNSFLITGGGGYFGFRLACALLKTSSKVVLFDVSPPIQDLPEGLIFMRADIRDYAQVEKAVRGSHCVFHIASYGMSGREQLNRKLIEEVNVKGTENILRACVAHSVPRLIYTSTFNVVFGGQEIKNGDESLPYLPLHLHPDHYSRTKSIAEMQVLKANNLALSNSTGVLRTCALRPAGIYGPGEQRHLPRIVSYIENGIFRFVYGDPDSLVEFVHVDNLVSAHLLAADALTEKQQCRAAGQAYFISDGRPVNNFEFFRPLVEGLGYSFPTLRLPISMIYFFAFLTEMVHFVVGRIYNFQPLLTRTEVYKTGVTHYFSMRKAREELGYEPKLYDLEDVVQWFQARGHGKKRSRSSIRKLILDVFVVVAFVAVLLSCLPVVGQ", "length": 387 }, "evidence": [ { "id": "A0A287A6U6", "url": "https://omabrowser.org/oma/group/A0A287A6U6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q32L94-1", "protein_name": "Short-chain dehydrogenase/reductase family 42E member 1", "gene_name": "SDR42E1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDSHKSPKETVLITGGGGYFGFRLGCALNLLGVHVILFDISHPAQTIPEGIRFILGDIRCLSDIENAFQGVDVACVFHIASYGMSGREQLNRSLIEEINVGGTDNILQACRRRGVPRLVYTSTFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLSANGTALERGGGVLSTCALRPAGIYGPGEQRHLPRIVSYIEKGLFRFVYGDPKSLVEFVHVDNLVQAHILASEALKANKGHIAAGQPYFISDGRPVNNFEFFRPLVEGLGYKFPSTRLPLTLIYCFAFLTEMTHFILGRLYNFQPFLTRTEVYKTGVTHYFSLEKARKELGYEAQPFDLQEAVEWFKAHGHGRRPGSCDSKCLVWDGLVILLVVTVVLVWLLPSVILSM", "length": 393 }, "evidence": [ { "id": "A0A287A6U6", "url": "https://omabrowser.org/oma/group/A0A287A6U6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8WUS8-1", "protein_name": "Short-chain dehydrogenase/reductase family 42E member 1", "gene_name": "SDR42E1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPKRSQKESVLITGGSGYFGFRLGCALNQNGVHVILFDISSPAQTIPEGIKFIQGDIRHLSDVEKAFQDADVTCVFHIASYGMSGREQLNRNLIKEVNVRGTDNILQVCQRRRVPRLVYTSTFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEQKVLEANATPLDRGDGVLRTCALRPAGIYGPGEQRHLPRIVSYIEKGLFKFVYGDPRSLVEFVHVDNLVQAHILASEALRADKGHIASGQPYFISDGRPVNNFEFFRPLVEGLGYTFPSTRLPLTLVYCFAFLTEMVHFILGRLYNFQPFLTRTEVYKTGVTHYFSLEKAKKELGYKAQPFDLQEAVEWFKAHGHGRSSGSRDSECFVWDGLLVFLLIIAVLMWLPSSVILSL", "length": 393 }, "evidence": [ { "id": "A0A287A6U6", "url": "https://omabrowser.org/oma/group/A0A287A6U6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D665-1", "protein_name": "Short-chain dehydrogenase/reductase family 42E member 1", "gene_name": "Sdr42e1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSPRFPEETVLITGGGGYFGFRLGCALNQKGARVILFDITQPAQNLPEGIKFVCGDIRCLADVETAFQDAEKVACVFHVASYGMSGREQLNKTQIEEVNVGGTENILRACLERGVPRLVYTSTFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEKKVLEANGLAFKQGDGILRTCAIRPAGIYGAGEQRHLPRIVSYIERGLFRFVYGDPQSLVEFVHVDNLAKAHILASEALKADKGHVASGQPYFISDGRPVNNFEFFRPLVEGLGYTFPSTRLPLTLIYCLAFLVEMTHFIVGRLYNFQPFLTRTEVYKTGVTHYFSLEKAKKELGFEPQPFDLQEVVEWFKAHGHGRGAAGQDSEFMLWDGILILLLALSVLTWILPSTTLSI", "length": 394 }, "evidence": [ { "id": "A0A287A6U6", "url": "https://omabrowser.org/oma/group/A0A287A6U6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "steroid biosynthetic process", "id": "GO:0006694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006694", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6U6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6U6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor", "id": "GO:0016616", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016616", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6U6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6U6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A6U6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A6U6" }, { "id": "PF01073", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01073" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "3-beta hydroxysteroid dehydrogenase/isomerase", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 284, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 167, "end_pos": 169 }, { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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"MAAPALALVSFEDVAITFTGEEWRHLDLAQRTLYQEVMLETCGLLVSLGHPVPKPELIHLLEHGQELWTVKRGHSKSTCAGDKAKPKTTELTASQPALTEEAPFEERVTHGPSRHSRLGQARDQGKLPEIQEGNLRPGTDPYKNSCSRKLSRKHDDLQTDDSLCLRILQERVTTRDAPHECDSQEPGKDPVIETKNNLYKCKECGKGFSKNWALVRHQQIHAGVKPYKCSECGKACRYMADFIRHMRFHTGEKPYKCIECGKAFKRRSHLTEHQRVHTGDKPYECKECGKAFTHRSSFIQHNMTHTREKPFLCKECGKAFYYSSSFTQHMRIHTGKKLYECSECGKAFTHRSTFIQHNMTHTGEKPFLCKECGKAFCLNSSFTQHMRIHTGEKPYECSECGKAFTHRSTFIRHKRTHTGEKPFKCKECGKAFSDSSSLIQHMRIHTGERPYECRECGKAFTHHSVFIRHNRTHSGEKPLECKECAKAFYYSSSFTRHMRIHTGEKPFVCRECGKAFTQPANFVRHNRIHTGEKPYECKECEKAFCDNFALTQHMRTHTGEKPFECGECGKAFSHSSSFTHHHKIHTRV", "length": 588, "header": "tr|A0A287A777-1|A0A287A777_PIG Isoform 1 of Zinc finger protein 599 OS=Sus scrofa OX=9823 GN=ZNF599 PE=3 SV=1 CANONICAL=A0A287A777-1" }, "isoforms": [ { "isoform_ac": "A0A287A777-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A777/entry#A0A287A777-1", "sequence": { "sequence": 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"Ensembl Peptide", "id": "ENSSSCP00000039669.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039669.1" } ] } }, { "isoform_ac": "A0A5G2QJ02-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A777/entry#A0A5G2QJ02-1", "sequence": { "sequence": "MAAPALALVSFEDVAITFTGEEWRHLDLAQRTLYQEVMLETCGLLVSLGHPVPKPELIHLLEHGQELWTVKRGHSKSTCAAFSSPLWKSSHPSHG", "length": 95, "header": "tr|A0A5G2QJ02-1|A0A287A777_PIG Computationally mapped isoform of Zinc finger protein 599 OS=Sus scrofa OX=9823 GN=ZNF599 PE=3 SV=1 CANONICAL=A0A287A777-1" }, "locus": { "chromosome": "6", "start_pos": 44388344, "end_pos": 44381504, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089905.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089905.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064776.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064776.1" } ] } }, { "isoform_ac": "A0A5G2R771-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A777/entry#A0A5G2R771-1", 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"Protein Classification" ] }, { "id": "IPR037158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517488", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517488", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A821", "url": "https://www.orthodb.org/?gene=A0A287A821", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43515", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43515", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43515:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43515:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01202", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01202", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14821", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14821", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24857", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24857", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020920567", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920567", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A821", "url": "https://www.uniprot.org/uniprotkb/A0A287A821", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A821-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A821-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BG09", "url": "https://www.uniprot.org/uniprotkb/A0A287BG09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BG09-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BG09-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVJ6", "url": "https://www.uniprot.org/uniprotkb/F1RVJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVJ6-1", "url": "https://www.uniprot.org/uniprotkb/F1RVJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLHLNRCQHLKQITQRCFPSMHVKMDKHAQLFLSRPFALAELRKSWRSISSLMGDKNIVLMGPPGAGKTTVGRIIGQKLGCCVIDVDDDILEKTWNMSVSEKLQDVGNEQFLEEEGRAVLNLSASGSVISLTGSNPMHDGSMWHLKKNGIIVYLDVPLIDIVGRLKLMKIDRIVGQNSGTSMKDLLKFRRQYYKKWYDTRVFCESGASPEEVADKVLNAVKRYQDVDSETFISTRHIWPKDCEQKVPTKFFSDAVIEGLASDGGLFVPEKEFPKLNWREWKSLVGATYIERAQILLEKCIHPADIPPAKLGEMIETAYGENFACSKIAPVRHLSGNQFILELFHGPTGSFKDLSLQLMPHIFAHCIPPSCNYMILVATSGDTGSAVLNGFSRLNNNDKQRIAVATFFPENGVSEFQKAQIIGNQQENGWAVGVKSDFDFCQTSIKRIFKDSDFTGFLTVEYGTVLSSANSINWGRLLPQVVYHASAYLDLVSQGFISFGSPVDVCIPTGNFGNILAAVYAKMMGIPIRKFICASNQNHVLTDFIKTGHYDLRERKLAQTFSPAIDILKSSNLERHLHLMANKDGQLMTRLFNQLEEQHHFQIEKILVEKLQQDFAADWCSEGECLAAIHSTYNTSGYILDPHTAVAKVVADRMQDKTCPVIVSSTAHYSKFAPTIMQALKIKEINQTSSSQVYLLSSYNALPPPHAALLERTKQPEKMEYQVCAADVSVLKSHVEKLVQNQFM", "length": 743, "header": "tr|A0A287A821-1|A0A287A821_PIG Isoform 1 of Threonine synthase like 1 OS=Sus scrofa OX=9823 GN=THNSL1 PE=1 SV=2 CANONICAL=A0A287A821-1" }, "isoforms": [ { "isoform_ac": "A0A287A821-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A821/entry#A0A287A821-1", "sequence": { "sequence": "MLHLNRCQHLKQITQRCFPSMHVKMDKHAQLFLSRPFALAELRKSWRSISSLMGDKNIVLMGPPGAGKTTVGRIIGQKLGCCVIDVDDDILEKTWNMSVSEKLQDVGNEQFLEEEGRAVLNLSASGSVISLTGSNPMHDGSMWHLKKNGIIVYLDVPLIDIVGRLKLMKIDRIVGQNSGTSMKDLLKFRRQYYKKWYDTRVFCESGASPEEVADKVLNAVKRYQDVDSETFISTRHIWPKDCEQKVPTKFFSDAVIEGLASDGGLFVPEKEFPKLNWREWKSLVGATYIERAQILLEKCIHPADIPPAKLGEMIETAYGENFACSKIAPVRHLSGNQFILELFHGPTGSFKDLSLQLMPHIFAHCIPPSCNYMILVATSGDTGSAVLNGFSRLNNNDKQRIAVATFFPENGVSEFQKAQIIGNQQENGWAVGVKSDFDFCQTSIKRIFKDSDFTGFLTVEYGTVLSSANSINWGRLLPQVVYHASAYLDLVSQGFISFGSPVDVCIPTGNFGNILAAVYAKMMGIPIRKFICASNQNHVLTDFIKTGHYDLRERKLAQTFSPAIDILKSSNLERHLHLMANKDGQLMTRLFNQLEEQHHFQIEKILVEKLQQDFAADWCSEGECLAAIHSTYNTSGYILDPHTAVAKVVADRMQDKTCPVIVSSTAHYSKFAPTIMQALKIKEINQTSSSQVYLLSSYNALPPPHAALLERTKQPEKMEYQVCAADVSVLKSHVEKLVQNQFM", "length": 743, "header": "tr|A0A287A821-1|A0A287A821_PIG Isoform 1 of Threonine synthase like 1 OS=Sus scrofa OX=9823 GN=THNSL1 PE=1 SV=2 CANONICAL=A0A287A821-1" }, "locus": { "chromosome": "10", "start_pos": 50303948, "end_pos": 50301720, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093893.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093893.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081061.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081061.1" } ] } }, { "isoform_ac": "A0A287BG09-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A821/entry#A0A287BG09-1", "sequence": { "sequence": "MLHLNRCQHLKQITQRCFPSMHVKMDKHAQLFLSRPFALAELRKSWRSISSLMGDKNIVLMGPPGAGKTTVGRIIGQKLGCCVIDVDDDILEKTWNMSVSEKLQDVGNEQFLEEEGRAVLNLSASGSVISLTGSNPMHDGSMWHLKKNGIIVYLDVPLIDIVGRLKLMKIDRIVGQNSGTSMKDLLKFRRQYYKKWYDTRVFCESGASPEEVADKVLNAVKRYQDVDSETFISTRHIWPKDCEQKVPTKFFSDAVIEGLASDGGLFVPEKEFPKLNWREWKSLVGATYIERAQILLEKCIHPADIPPAKLGEMIETAYGENFACSKIAPVRHLSGNQFILELFHGPTGSFKDLSLQLMPHIFAHCIPPSCNYMILVATSGDTGSAVLNGFSRLNNNDKQRIAVATFFPENGVSEFQKAQIIGNQQENGWAVGVKSDFDFCQTSIKRIFKDSDFTGFLTVEYGTVLSSANSINWGRLLPQVVYHASAYLDLVSQGFISFGSPVDVCIPTGNFGNILAAVYAKMMGIPIRKFICASNQNHVLTDFIKTGHYDLRERKLAQTFSPAIDILKSSNLERHLHLMANKDGQLMTRLFNQLEEQHHFQIEKILVEKLQQDFAADWCSEGECLAAIHSTYNTSGYILDPHTAVAKVVADRMQDKTCPVIVSSTAHYSKFAPTIMQALKIKEINQTSSSQVYLLSSYNALPPPHAALLERTKQPEKMEYQVCAADVSVLKSHVEKLVQNQFIILASLAPSVVSSAVSSTSPL", "length": 763, "header": "tr|A0A287BG09-1|A0A287BG09_PIG Computationally mapped isoform of Threonine synthase like 1 OS=Sus scrofa OX=9823 GN=THNSL1 PE=1 SV=1 CANONICAL=A0A287A821-1" }, "locus": { "chromosome": "10", "start_pos": 50303948, "end_pos": 50299721, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047407.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047407.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055277.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055277.1" } ] } }, { "isoform_ac": "F1RVJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A821/entry#F1RVJ6-1", "sequence": { "sequence": "MLHLNRCQHLKQITQRCFPSMHVKMDKHAQLFLSRPFALAELRKSWRSISSLMGDKNIVLMGPPGAGKTTVGRIIGQKLGCCVIDVDDDILEKTWNMSVSEKLQDVGNEQFLEEEGRAVLNLSASGSVISLTGSNPMHDGSMWHLKKNGIIVYLDVPLIDIVGRLKLMKIDRIVGQNSGTSMKDLLKFRRQYYKKWYDTRVFCESGASPEEVADKVLNAVKRYQDVDSETFISTRHIWPKDCEQKVPTKFFSDAVIEGLASDGGLFVPEKEFPKLNWREWKSLVGATYIERAQILLEKCIHPADIPPAKLGEMIETAYGENFACSKIAPVRHLSGNQFILELFHGPTGSFKDLSLQLMPHIFAHCIPPSCNYMILVATSGDTGSAVLNGFSRLNNNDKQRIAVATFFPENGVSEFQKAQIIGNQQENGWAVGVKSDFDFCQTSIKRIFKDSDFTGFLTVEYGTVLSSANSINWGRLLPQVVYHASAYLDLVSQGFISFGSPVDVCIPTGNFGNILAAVYAKMMGIPIRKFICASNQNHVLTDFIKTGHYDLRERKLAQTFSPAIDILKSSNLERHLHLMANKDGQLMTRLFNQLEEQHHFQIEKILVEKLQQDFAADWCSEGECLAAIHSTYNTSGYILDPHTAVAKVVADRMQDKTCPVIVSSTAHYSKFAPTIMQALKIKEINQTSSSQVYLLSSYNALPPPHAALLERTKQPEKMEYQVCAADVSVLKSHVEKLVQNQFMCNACSSWKHWQDNKGCQPSFLSQKF", "length": 768, "header": "tr|F1RVJ6-1|A0A287A821_PIG Computationally mapped isoform of Threonine synthase like 1 OS=Sus scrofa OX=9823 GN=THNSL1 PE=1 SV=3 CANONICAL=A0A287A821-1" }, "locus": { "chromosome": "10", "start_pos": 50303948, "end_pos": 50286827, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012115.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012115.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011807.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011807.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RVJ6", "url": "https://www.uniprot.org/uniprotkb/F1RVJ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517488", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517488", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287A821", "url": "https://www.uniprot.org/uniprotkb/A0A287A821" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 633, "end_pos": 635, "annotation": "n_glycosylation_sequon" }, { "start_pos": 685, "end_pos": 687, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A821", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A821" }, { "id": "PF14821", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14821" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Threonine synthase N-terminal", "eco_id": "ECO_0000259", "start_pos": 246, "end_pos": 318, "start_aa": "Val", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 }, { "start_pos": 633, "end_pos": 635 }, { "start_pos": 685, "end_pos": 687 }, { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A837-1", "uniprot_ac": "A0A287A837", "uniprot_id": "A0A287A837_PIG", "mass": { "chemical_mass": 21351.0, "monoisotopic_mass": 21351.0 }, "refseq": {}, "gene_names": [ { "name": "LZIC", "type": "recommended", "evidence": [ { "id": "A0A287A837", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A837" } ] } ], "protein_names": [ { "name": "Protein LZIC", "type": "recommended", "evidence": [ { "id": "A0A287A837", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A837/entry#names_and_taxonomy" } ] }, { "name": "Leucine zipper and CTNNBIP1 domain-containing protein", "type": "synonym", "evidence": [ { "id": "A0A287A837", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A837/entry#names_and_taxonomy" } ] }, { "name": "Leucine zipper and ICAT homologous domain-containing protein", "type": "synonym", "evidence": [ { "id": "A0A287A837", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A837/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A837", "url": "https://www.uniprot.org/uniprotkb/A0A287A837" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LZIC", "url": "https://www.uniprot.org/uniprotkb/A0A287A837", "locus": { "chromosome": "6", "start_pos": 70259151, "end_pos": 70271955, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": 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"isoform_ac": "A0A287B2M0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A893/entry#A0A287B2M0-1", "sequence": { "sequence": "MATASPAAEGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPAASLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIAFFVRG", "length": 316, "header": "tr|A0A287B2M0-1|A0A287B2M0_PIG Computationally mapped isoform of ERI1 exoribonuclease 3 OS=Sus scrofa OX=9823 GN=ERI3 PE=1 SV=2 CANONICAL=A0A287A893-1" }, "locus": { "chromosome": "6", "start_pos": 167073239, "end_pos": 166957547, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066160.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066160.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050656.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050656.2" } ] } }, { "isoform_ac": "A0A287BQQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A893/entry#A0A287BQQ4-1", "sequence": { "sequence": "MCVYPQHWGFPALTEPSASPAASLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF", "length": 298, "header": "tr|A0A287BQQ4-1|A0A287BQQ4_PIG Computationally mapped isoform of ERI1 exoribonuclease 3 OS=Sus scrofa OX=9823 GN=ERI3 PE=1 SV=1 CANONICAL=A0A287A893-1" }, "locus": { "chromosome": "6", "start_pos": 167082185, "end_pos": 166960132, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041323.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041323.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058447.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058447.1" } ] } }, { "isoform_ac": "A0A5G2RCH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A893/entry#A0A5G2RCH9-1", "sequence": { "sequence": "MATASPAAEGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHPGVGDAERPPRLGPGHACGVRVAARILDASGCSMLAPLQTGAARFSSYLLSRARKVLGSHLFSPCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKVLLEPTSL", "length": 283, "header": "tr|A0A5G2RCH9-1|A0A287A893_PIG Computationally mapped isoform of ERI1 exoribonuclease family member 3 OS=Sus scrofa OX=9823 GN=ERI3 PE=1 SV=1 CANONICAL=A0A287A893-1" }, "locus": { "chromosome": "6", "start_pos": 167024991, "end_pos": 166957547, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090823.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090823.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068349.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068349.1" } ] } }, { "isoform_ac": "F1S331-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A893/entry#F1S331-1", "sequence": { "sequence": "VFGVPPVCWLQIEARLLMGFWGQCFEVLGLAGQYGKEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF", "length": 210, "header": "tr|F1S331-1|A0A287A893_PIG Computationally mapped isoform of ERI1 exoribonuclease family member 3 OS=Sus scrofa OX=9823 GN=ERI3 PE=1 SV=4 CANONICAL=A0A287A893-1" }, "locus": { "chromosome": "6", "start_pos": 167082185, "end_pos": 166986420, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004352.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004352.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004252.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004252.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RCH9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCH9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287A893", "url": "https://www.uniprot.org/uniprotkb/A0A287A893" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A287A893", "url": "https://www.uniprot.org/uniprotkb/A0A287A893" } ], "pmid": "" }, { "name": "3'-5'-RNA exonuclease activity", "id": "GO:0000175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000175", "evidence": [ { "database": "UniProtKB", "id": "A0A287A893", "url": "https://www.uniprot.org/uniprotkb/A0A287A893" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287A893", "url": "https://www.uniprot.org/uniprotkb/A0A287A893" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000467", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000467", "evidence": [ { "database": "UniProtKB", "id": "A0A287A893", "url": "https://www.uniprot.org/uniprotkb/A0A287A893" } ], "pmid": "" }, { "name": "negative regulation of regulatory ncRNA-mediated heterochromatin formation", "id": "GO:0060906", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060906", "evidence": [ { "database": "UniProtKB", "id": "A0A287A893", "url": "https://www.uniprot.org/uniprotkb/A0A287A893" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A893-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 317, 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"https://www.ensembl.org/id/ENSSSCP00000072978.1" } ] } }, { "isoform_ac": "F1SUC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8F2/entry#F1SUC9-1", "sequence": { "sequence": "MLRKMGEAVARVARKVNETVESGSDTLELHLEGNFLHRLPNEVSTLQHLKAIDLSRNHFHDFPEQLTTLPALETINLEENEIVDVPVEKLAAMPALRSINLRFNPLNAEVRVIAPPLIKFDMLMSPEGARAPPP", "length": 134, "header": "tr|F1SUC9-1|A0A287A8F2_PIG Computationally mapped isoform of Leucine rich repeat containing 20 OS=Sus scrofa OX=9823 GN=LRRC20 PE=1 SV=4 CANONICAL=A0A287A8F2-1" }, "locus": { "chromosome": "14", "start_pos": 73290048, "end_pos": 73216751, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011237.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011237.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010945.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010945.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUC9", "url": "https://www.uniprot.org/uniprotkb/F1SUC9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100151944", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151944", "resource": "KEGG Pathway" } ], "orthologs": 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057038", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057038", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517089", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517089", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CGTTPNC", "url": "https://omabrowser.org/oma/group/CGTTPNC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A8K9", "url": "https://www.orthodb.org/?gene=A0A287A8K9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15739", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15739", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15739:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15739:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23165", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23165", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020943034", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943034", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A8K9", "url": "https://www.uniprot.org/uniprotkb/A0A287A8K9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8K9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8K9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLF7", "url": "https://www.uniprot.org/uniprotkb/F1SLF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLF7-1", "url": "https://www.uniprot.org/uniprotkb/F1SLF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASLDLPYRCPRCGEHKRFRSLSSLRAHLEYSHTYETLYILSKTNSICDSAAAAAAAAAASGFQLAPEPAALLAVPGARREVFESTSFQGKEQATGPSPAAPHLLHHHHHHAPLAHFPGDLVPASLPCEELAEPGLVPAAAARYALREIEIPLGELFARKSVASSACSTPPPGPGPGSCSGPASASPASPSPADVAYEEGLARLKIRALEKLEVDRRLERLSEEVEQKIAGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDVSVELLASLKQDLVHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAERQLQVISSSCGSTPSASLGRGAGGSGAGPGTRGPGRSREHHAGPAVPSTYAVSRHGSSPSTGASSRIPAASQSSGCYDSDSLELPRPEEGTPEDSGPGGLGTRVQAANGGSDRAQPPRSSGLRRQAIQNWQRRPRRHSTEGEEGDVSDVGSRTTESEAEGPSDAPRPGPAVAGPLSSCRLSARPEGGSGRGRRAERGSPSRSNEVISPEILKMRAALFCIFTYLDTRTLLHAAEVCRDWRFVARHPAVWTRVLLENARVCSKFLAMLAQWCTQAHSLTLQNLKPRQRGKKESKEEYARSTRGCLEAGLESLLKAAGGNLLILRISHCPNILTDRSLWLASCYCRALQAVTYRSATDPVGHEVIWALGAGCREIVSLQVAPLHPCQQPTRFSNRCLQMIGRCWPHLRALGVGGAGCGVQGLASLARNCMRLQVLELDHVSEITQEVAAEVCREGLKGLEMLVLTATPVTPKALLHFNSICRNLKSIVVQIGIADYFKEPSSPEAQKLFEDMVTKLQALRRRPGFSKILHVKVEGGC", "length": 874, "header": "tr|A0A287A8K9-1|A0A287A8K9_PIG Isoform 1 of F-box only protein 41 OS=Sus scrofa OX=9823 GN=FBXO41 PE=1 SV=1 CANONICAL=A0A287A8K9-1" }, "isoforms": [ { "isoform_ac": "A0A287A8K9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8K9/entry#A0A287A8K9-1", "sequence": { "sequence": "MASLDLPYRCPRCGEHKRFRSLSSLRAHLEYSHTYETLYILSKTNSICDSAAAAAAAAAASGFQLAPEPAALLAVPGARREVFESTSFQGKEQATGPSPAAPHLLHHHHHHAPLAHFPGDLVPASLPCEELAEPGLVPAAAARYALREIEIPLGELFARKSVASSACSTPPPGPGPGSCSGPASASPASPSPADVAYEEGLARLKIRALEKLEVDRRLERLSEEVEQKIAGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDVSVELLASLKQDLVHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAERQLQVISSSCGSTPSASLGRGAGGSGAGPGTRGPGRSREHHAGPAVPSTYAVSRHGSSPSTGASSRIPAASQSSGCYDSDSLELPRPEEGTPEDSGPGGLGTRVQAANGGSDRAQPPRSSGLRRQAIQNWQRRPRRHSTEGEEGDVSDVGSRTTESEAEGPSDAPRPGPAVAGPLSSCRLSARPEGGSGRGRRAERGSPSRSNEVISPEILKMRAALFCIFTYLDTRTLLHAAEVCRDWRFVARHPAVWTRVLLENARVCSKFLAMLAQWCTQAHSLTLQNLKPRQRGKKESKEEYARSTRGCLEAGLESLLKAAGGNLLILRISHCPNILTDRSLWLASCYCRALQAVTYRSATDPVGHEVIWALGAGCREIVSLQVAPLHPCQQPTRFSNRCLQMIGRCWPHLRALGVGGAGCGVQGLASLARNCMRLQVLELDHVSEITQEVAAEVCREGLKGLEMLVLTATPVTPKALLHFNSICRNLKSIVVQIGIADYFKEPSSPEAQKLFEDMVTKLQALRRRPGFSKILHVKVEGGC", "length": 874, "header": "tr|A0A287A8K9-1|A0A287A8K9_PIG Isoform 1 of F-box only protein 41 OS=Sus scrofa OX=9823 GN=FBXO41 PE=1 SV=1 CANONICAL=A0A287A8K9-1" }, "locus": { "chromosome": "3", "start_pos": 69521816, "end_pos": 69511905, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065842.2", "url": "https://www.ensembl.org/id/ENSSSCT00000065842.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040153.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040153.1" } ] } }, { "isoform_ac": "F1SLF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8K9/entry#F1SLF7-1", "sequence": { "sequence": "MASLDLPYRCPRCGEHKRFRSLSSLRAHLEYSHTYETLYILSKTNSICDSAAAAAAAAAASGFQLAPEPAALLAVPGARREVFESTSFQGKEQATGPSPAAPHLLHHHHHHAPLAHFPGDLVPASLPCEELAEPGLVPAAAARYALREIEIPLGELFARKSVASSACSTPPPGPGPGSCSGPASASPASPSPADVAYEEGLARLKIRALEKLEVDRRLERLSEEVEQKIAGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDVSVELLASLKQDLVHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAERQLQVISSSCGSTPSASLGRGAGGSGAGPGTRGPGRSREHHAGPAVPSTYAVSRHGSSPSTGASSRIPAASQSSGCYDSDSLELPRPEEGTPEDSGPGGLGTRVQAANGGSDRAQPPRSSGLRRQAIQNWQRRPRRHSTEGEEGDVSDVGSRTTESEAEGPSDAPRPGPAVAGPLSSCRLSARPEGGSGRGRRAERGSPSRSNEVISPEILKMRAALFCIFTYLDTRTLLHAAEVCRDWRFVARHPAVWTRVLLENARVCSKFLAMLAQWCTQAHSLTLQNLKPRQRGKKESKEEYARSTRGCLEAGLESLLKAAGGNLLILRISHCPNILTDRSLWLASCYCRALQAVTYRSATDPVGHEVIWALGAGCREIVSLQVAPLHPCQQPTRFSNRCLQMIGRCWPHLRALGVGGRVAAVAPNCMRLQVLELDHVSEITQEVAAEVCREGLKGLEMLVLTATPVTPKALLHFNSICRNLKSIVVQIGIADYFKEPSSPEAQKLFEDMVTKLQALRRRPGFSKILHVKVEGGC", "length": 868, "header": "tr|F1SLF7-1|A0A287A8K9_PIG Computationally mapped isoform of F-box only protein 41 OS=Sus scrofa OX=9823 GN=FBXO41 PE=1 SV=3 CANONICAL=A0A287A8K9-1" }, "locus": { "chromosome": "3", "start_pos": 69521816, "end_pos": 69511905, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009093.3", "url": "https://www.ensembl.org/id/ENSSSCT00000009093.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008864.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008864.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 352, "start_aa": "Thr", "end_pos": 352, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr352", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLF7", "url": "https://www.uniprot.org/uniprotkb/F1SLF7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517089", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517089", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z656-1", "protein_name": "F-box only protein 41", "gene_name": "FBXO41", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASLDLPYRCPRCGEHKRFRSLSSLRAHLEYNHTYETLYVLSKTNSICDAAVFPLAADGALLTPAARRDYFESTSFQGKEQRFSCDLVPAEELEPAPSSSPSPRYVHEIEIPLTEIFTRGKAVAPAPTPPAAMDAAYEEGLARLKIRAFEKLEVDKRLEKLTEEVEQKIASQVGRLQVELDRKSSELEKAKQESLRLSREKQELEDRASELSRQVDVSVEMLASLKQDLVQKEQELTRKQQEVLQIDQFLKETAAREANAKVRLQHFIEELLDRADRAEKQLQIISSSCGTTPNGSLGRCGTPGAKAAGRPVPTRAQRERHPGLGAAVHGPYAIPNQRSSSSTGASSRAKAVSQSSGCYDSDSAEPCPTDDTADGHPYTARDGGRGSGLRRQAIQNWHRRPYRNSTEGEEGDVSDVGSRTTESEAEGWEPEVPGIAASRPGGSCRLTARSEGAMSKGGRLERGSPGHSSEVISPEILKMRAALFCIFTYLDTKTLLRAAEVCKDWKFVARHPAVWTRVLLENARVSSKFLAMLSQWCTQMHSLTLQNLKPRQRGKKESKEDYMKSTRGCLEAGLESLLKATGSNLLILRISHCPNVLTDRSLWLASCYCRALQAVTYRSSTDPVGHEVIWALGAGCRDIISLQVAPLHPCQQPTRFSNRCLQMIGRCWPHLRALGIGGAGCGVQGLASLARNCMRLQVLELDHVAEINQEVAAEMCREGLKGLEMLVLTSTPVTPKALLHFNSVCRNLKSIVVQVGIVDYFKEPHSPEAKKMFEEMVNKLQALRKRPGFSKILHIKVEGGC", "length": 801 }, "evidence": [ { "id": "A0A287A8K9", "url": "https://omabrowser.org/oma/group/A0A287A8K9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0M8C7-1", "protein_name": "F-box only protein 41", "gene_name": "Fbxo41", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASLDLPYRCPRCGEHKRFRSLSSLRAHLEYSHTYETLYILSKTNSICDGAAAAAAAAAAASGFPLAPEPAALLAVPGARREVFESTSFQGKEQAAGPAPAGPHLLHHHHHHAPLAHFPGDLVPASLPCEELAEPGLVPAARYALREIEIPLGELFARKSVASSACSTPPPGPGPGPCSGPTSASPASPSPADVAYEEGLARLKIRALEKLEVDRRLERLSEEVEQKIAGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDVSVELLASLKQDLVHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAERQLQVISSSCGSTPSASLGRGGGGSASGPGLRGPGRMREHHAGPAVPSTYAVSRHGSSPSTGASSRVPAASQSSGCYDSDSLELPRQEEGPSEDSGPGGLGSRAQATNGGSERSQPPRSSGLRRQAIQNWQRRPRRHSTEGEEGDVSDVGSRTTESEAEGPSDVPRPGPAVAGPLNSCRLSARPEGGSGRGRRMERGSPSRSNEVISPEILKMRAALFCIFTYLDTRTLLHAAEVCRDWRFVARHPAVWTRVLLENARVCSKFLAMLAQWCTQAHSLTLQNLKPRQRGKKESKEEYARSTRGCLEAGLESLLKAAGGNLLILRISHCPNILTDRSLWLASCYCRALQAVTYRSATDPVGHEVIWALGAGCRDIVSLQVAPLHPCQQPTRFSNRCLQMIGRCWPHLRALGVGGAGCGVQGLASLARNCMRLQVLELDHVSEITQEVAAEVCREGLKGLEMLVLTATPVTPKALLHFNSICRNLKSIVVQIGIADYFKEPSSPEAQKLFEDMVTKLQALRRRPGFSKILHIKVEGGC", "length": 873 }, "evidence": [ { "id": "A0A287A8K9", "url": "https://omabrowser.org/oma/group/A0A287A8K9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BK68-1", "protein_name": "F-box only protein 41", "gene_name": "FBXO41", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASLDLPYRCPRCGEHKRFRSLSSLRAHLEYSHTYETLYILSKTNSICDGAAAAFPLAPEPAALLAVPGARREVFESTSFQGKEQAVGQSSAAPHLLHHHHHHAPLAHFPGDLVPAGLPCEELAEPGLVPAARYALREIEIPLGELFARKSVASSACSTPPPGPGPGPCPGPASASPASPSPADVAYEEGLARLKIRALEKLEVDRRLERLSEEVEQKIAGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDVSVELLASLKQDLVHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAERQLQVISSSCGSTPSASLGRGGGGAGAGPSTRAPGRMREHHAGPAMPSTYAVSRHGSSPSTGASSRIPAASQSSGCYDSDSLELPRPEEGAPEDSGPGGLGTRVQAANGGSERAQPPRSSGLRRQAIQNWQRRPRRHSTEGEEGDVSDVGSRTTESEAEGPSEVPRPGPAMAGPVSSCRLSARPEGGSGRGRRAERGSPSRSNEVISPEILKMRAALFCIFTYLDTRTLLHAAEVCRDWRFVARHPAVWTRVLLENARVCSKFLAMLAQWCTQAHSLTLQNLKPRQRGKKESKEEYARSTRGCLEAGLESLLKAAGGNLLILRISHCPNILTDRSLWLASCYCRALQAVTYRSATDPVGHEVIWALGAGCREIVSLQVAPLHPCQQPMRFSNRCLQMIGRCWPHLRALGVGGAGCGVQGLASLARNCMRLQVLELDHVSEITQEVAAEVCREGLKGLEMLVLTATPVTPKALLHFNSICRNLKSIVVQIGIADYFKEPSSPEAQKLFEDMVTKLQALRRRPGFSKILHIKVEGC", "length": 863 }, "evidence": [ { "id": "A0A287A8K9", "url": "https://omabrowser.org/oma/group/A0A287A8K9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F6NUQ2-1", "protein_name": "F-box only protein 41", "gene_name": "fbxo41", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASLDLPYRCPRCGEHKRFRSLSSLRAHLEYNHTYETLYVLSKSNSVCDAAALLPLVADGALTAESRFPYRELPCSGEELGLAPSSTACYLPNVEFPLGEILVKTAMSSSDALSSAGNNAVAVAANVAASAVEAAYEEGLARLKARAFERLELDERLEKLSEEVEQKISARVSRLQAELERKSSELEKAKLESERLSQEKQDLEDKATELSRQVDVSVEMLASLKQDLVNKEQELSHKQQEVSQIDQFLQETAAREANAKLRLQQFIEELLDRADRAEKQLQIISNCGTTPNGSLGHCSLGSKSNGRQRNSSLSGVSRGMYQVSDRRSSPSTAASVRGKSVSQGSGGYDSDSVDLHALEDCPDAQYYHVQCRLGEGGGAGYERAAASRSWGLRKQAIQNWQRRPYRNSMEGEEGDVSDVGSRTTESEAEMWEQDRRADSSQHAGHRGGYRLPTGRSEGGYKACRHEKSPSKGSEVISPEVLKMRAALFCIFTYLDTKTLLRAAEVCRDWRSVARHPAVWTRVLLENARICSKFLCTLSQWCTQTHSLILQNLKPRQRGKKETKEEYLKSTRGCLEEGLEALLKGTGSNLLILKVSHCPNLLTDRSLWLASCYCRALQAVTYRSATDPVGQEVIWALGAGCRDIISLQVAPLHPCQQPARFSNRCLQTIGRCWPHLRALGVGGAGCGIQGLASLARNCMRLQVLELDHVSEINQEVAAEMCREGLKGLEMLVLTSTPVTPKALLHFNSVCRNLKSIVVQIGIEDYFEDPNSPEARKLFDEMVNKLQALKKRPGFSKILHVKADGLC", "length": 805 }, "evidence": [ { "id": "A0A287A8K9", "url": "https://omabrowser.org/oma/group/A0A287A8K9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NS60-1", "protein_name": "F-box only protein 41", "gene_name": "Fbxo41", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASLDLPYRCPRCGEHKRFRSLSSLRAHLEYSHTYETLYILSKTNSICDGAAAAAAAAAAASGFPLAPEPAALLAVPGARREVFESTSFQGKEQATGPSPAGPHLLHHHHHHAPLAHFPADLVPASLPCEELAEPGLVPAARYALREIEIPLGELFARKSVASSACSTPPPGPGPGPCSGPSSASPASPSPADVAYEEGLARLKIRALEKLEVDRRLERLSEEVEQKIAGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDVSVELLASLKQDLVHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAERQLQVISSSCGSTPSASLGRGGGGSASGPGVRGPGRMREHHAGSAVPSTYAVSRHGSSPSTGASSRVPAASQSSGCYDSDSLELPRPEEGPSEDSGPGGLGSRAQATNGGSERSQAPRSSGLRRQAIQNWQRRPRRHSTEGEEGDVSDVGSRTTESEAEGPSDVPRPGPAVAGPLNSCRLSARPEGGSGRGRRVERGSPSRSNEVISPEILKMRAALFCIFTYLDTRTLLHAAEVCRDWRFVARHPAVWTRVLLENARVCSKFLAMLAQWCTQAHSLTLQNLKPRQRGKKESKEEYARSTRGCLEAGLESLLKAAGGNLLILRISHCPNILTDRSLWLASCYCRALQAVTYRSATDPVGHEVIWALGAGCRDIVSLQVAPLHPCQQPTRFSNRCLQMIGRCWPHLRALGVGGAGCGVQGLASLARNCMRLQVLELDHVSEITQEVAAEVCREGLKGLEMLVLTATPVTPKALLHFNSICRNLKSIVVQIGIADYFKEPSSPEAQKLFEDMVTKLQALRRRPGFSKILHIKVEGGC", "length": 873 }, "evidence": [ { "id": "A0A287A8K9", "url": "https://omabrowser.org/oma/group/A0A287A8K9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TF61-1", "protein_name": "F-box only protein 41", "gene_name": "FBXO41", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASLDLPYRCPRCGEHKRFRSLSSLRAHLEYSHTYETLYILSKTNSICDGAAAAAAAAAAASGFPLAPEPAALLAVPGARREVFESTSFQGKEQAAGPSPAAPHLLHHHHHHAPLAHFPGDLVPASLPCEELAEPGLVPAAAARYALREIEIPLGELFARKSVASSACSTPPPGPGPGPCPGPASASPASPSPADVAYEEGLARLKIRALEKLEVDRRLERLSEEVEQKIAGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDVSVELLASLKQDLVHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAERQLQVISSSCGSTPSASLGRGGGGGGAGPNARGPGRMREHHVGPAVPNTYAVSRHGSSPSTGASSRVPAASQSSGCYDSDSLELPRPEEGAPEDSGPGGLGTRAQAANGGSERSQPPRSSGLRRQAIQNWQRRPRRHSTEGEEGDVSDVGSRTTESEAEGPLDAPRPGPAMAGPLSSCRLSARPEGGSGRGRRAERVSPSRSNEVISPEILKMRAALFCIFTYLDTRTLLHAAEVCRDWRFVARHPAVWTRVLLENARVCSKFLAMLAQWCTQAHSLTLQNLKPRQRGKKESKEEYARSTRGCLEAGLESLLKAAGGNLLILRISHCPNILTDRSLWLASCYCRALQAVTYRSATDPVGHEVIWALGAGCREIVSLQVAPLHPCQQPTRFSNRCLQMIGRCWPHLRALGVGGAGCGVQGLASLARNCMRLQVLELDHVSEITQEVAAEVCREGLKGLEMLVLTATPVTPKALLHFNSICRNLKSIVVQIGIADYFKEPSSPEAQKLFEDMVTKLQALRRRPGFSKILHIKVEGGC", "length": 875 }, "evidence": [ { "id": "A0A287A8K9", "url": "https://omabrowser.org/oma/group/A0A287A8K9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A8K9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 874, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A8K9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A8K9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A8K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A8K9" }, { "id": "PF12937", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 556, "end_pos": 593, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287A8K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A8K9" }, { "id": "PF23165", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23165" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FBX41/ZN365 C2H2-type zinc finger", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 35, "start_aa": "Leu", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 352 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A8M3-1", "uniprot_ac": "A0A287A8M3", "uniprot_id": "A0A287A8M3_PIG", "mass": { "chemical_mass": 78170.0, "monoisotopic_mass": 78170.0 }, "refseq": {}, "gene_names": [ { "name": "NOA1", "type": "recommended", "evidence": [ { "id": "A0A287A8M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3" } ] } ], "protein_names": [ { "name": "Nitric oxide associated 1", "type": "synonym", "evidence": [ { "id": "A0A287A8M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A8M3", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NOA1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3", "locus": { "chromosome": "8", "start_pos": 56221663, "end_pos": 56231920, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025792", "url": "https://www.ensembl.org/id/ENSSSCG00000025792" } ] } } ], "crossref": [ { "id": "ENSSSCG00000025792", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025792", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01855", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01855", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR006073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052807", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052807", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100621115", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621115", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LGCTNVG", "url": "https://omabrowser.org/oma/group/LGCTNVG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A8M3", "url": "https://www.orthodb.org/?gene=A0A287A8M3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46406", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46406", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46406:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46406:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A8M3", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8M3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LQI1", "url": "https://www.uniprot.org/uniprotkb/I3LQI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LQI1-1", "url": "https://www.uniprot.org/uniprotkb/I3LQI1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPTRLAPRLLCGFLQGASPTAARLGLQDALLERRCAASLSSQRPWALGRGRSRYRTATGGSEGRADLEESFLFPEYIPEPEPAPTLQDQLREVQQRQEENERQMQQRREERRQQKLRAARRVQRAQPVVGHPDPTVAPSGLNCSGCGAELHCQDPGVPGYLPSEKFLRAAAQADGGLARTVCQRCWLLVHHRRALRLQVSPEKYLELVSAALRRPEPALVLYMVDLLDLPDALLRHLPALVGPKQLIVLGNKVDLLPQDAPGYRQRIRERLWDDCARVGLLPPPGSRRSQHPGRKQPRDQAEKANHSAKSRAVLRDVRLISAKTGYGVEELISALQRSWRYRGDVYLVGATNAGKSTLFNTLLESDYCIAKGAEAIDRATISAWPGTTLNLLKFPICNPTPYRMFQRQKRLKRDAVEAEEDLSQQEQNQLNLLKKHGYVVGRVGRTFSCSEQKEEAAFEFDANSLAFDMGDDPVMVADKPTRRIELTPQDVKDARWFYDTPGITKDNCILNLLTEKEVNIVLPTQAIVPRTFVLQPGMVLFLGAIGRIDFLQGNQSAWFTVVASNFLPVHITSLDKADTVYKKHAGHTLLKVPVGGKERMAGFPPLVAEDITLDEGLGESEAVADIKFSSAGWVAVTPQFKDRLHLRGHMPQGTFLTVRPPLLPHIVNIKGPRIQRSVAYQTKKPPPLVYNVQKKKKR", "length": 699, "header": "tr|A0A287A8M3-1|A0A287A8M3_PIG Isoform 1 of Nitric oxide associated 1 OS=Sus scrofa OX=9823 GN=NOA1 PE=4 SV=1 CANONICAL=A0A287A8M3-1" }, "isoforms": [ { "isoform_ac": "A0A287A8M3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3/entry#A0A287A8M3-1", "sequence": { "sequence": "MLPTRLAPRLLCGFLQGASPTAARLGLQDALLERRCAASLSSQRPWALGRGRSRYRTATGGSEGRADLEESFLFPEYIPEPEPAPTLQDQLREVQQRQEENERQMQQRREERRQQKLRAARRVQRAQPVVGHPDPTVAPSGLNCSGCGAELHCQDPGVPGYLPSEKFLRAAAQADGGLARTVCQRCWLLVHHRRALRLQVSPEKYLELVSAALRRPEPALVLYMVDLLDLPDALLRHLPALVGPKQLIVLGNKVDLLPQDAPGYRQRIRERLWDDCARVGLLPPPGSRRSQHPGRKQPRDQAEKANHSAKSRAVLRDVRLISAKTGYGVEELISALQRSWRYRGDVYLVGATNAGKSTLFNTLLESDYCIAKGAEAIDRATISAWPGTTLNLLKFPICNPTPYRMFQRQKRLKRDAVEAEEDLSQQEQNQLNLLKKHGYVVGRVGRTFSCSEQKEEAAFEFDANSLAFDMGDDPVMVADKPTRRIELTPQDVKDARWFYDTPGITKDNCILNLLTEKEVNIVLPTQAIVPRTFVLQPGMVLFLGAIGRIDFLQGNQSAWFTVVASNFLPVHITSLDKADTVYKKHAGHTLLKVPVGGKERMAGFPPLVAEDITLDEGLGESEAVADIKFSSAGWVAVTPQFKDRLHLRGHMPQGTFLTVRPPLLPHIVNIKGPRIQRSVAYQTKKPPPLVYNVQKKKKR", "length": 699, "header": "tr|A0A287A8M3-1|A0A287A8M3_PIG Isoform 1 of Nitric oxide associated 1 OS=Sus scrofa OX=9823 GN=NOA1 PE=4 SV=1 CANONICAL=A0A287A8M3-1" }, "locus": { "chromosome": "8", "start_pos": 56231705, "end_pos": 56225292, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055983.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055983.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040286.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040286.1" } ] } }, { "isoform_ac": "I3LQI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3/entry#I3LQI1-1", "sequence": { "sequence": "MPPARLAPRLLCGLLRGSLSHGRAPWSPGRAPGEEMCGQPFIPAPTVAPSGLNCSGCGAELHCQDPGVPGYLPSEKFLRAAAQADGGLARTVCQRCWLLVHHRRALRLQVSPEKYLELVSAALRRPEPALVLYMVDLLDLPDALLRHLPALVGPKQLIVLGNKVDLLPQDAPGYRQRIRERLWDDCARVGLLPPPGSRRSQHPGRKQPRDQAEKANHSAKSRAVLRDVRLISAKTGYGVEELISALQRSWRYRGDVYLVGATNAGKSTLFNTLLESDYCIAKGAEAIDRATISAWPGTTLNLLKFPICNPTPYRMFQRQKRLKRDAVEAEEDLSQQEQNQLNLLKKHGYVVGRVGRTFSCSEQKEEAAFEFDANSLAFDMGDDPVMVADKPTRRIELTPQDVKDARWFYDTPGITKDNCILNLLTEKEVNIVLPTQAIVPRTFVLQPGMVLFLGAIGRIDFLQGNQSAWFTVVASNFLPVHITSLDKADTVYKKHAGHTLLKVPVGGKERMAGFPPLVAEDITLDEGLGESEAVADIKFSSAGWVAVTPQFKDRLHLRGHMPQGTFLTVRPPLLPHIVNIKGPRIQRSVAYQTKKPPPLVYNVQKKKKR", "length": 609, "header": "tr|I3LQI1-1|A0A287A8M3_PIG Computationally mapped isoform of Nitric oxide associated 1 OS=Sus scrofa OX=9823 GN=NOA1 PE=4 SV=3 CANONICAL=A0A287A8M3-1" }, "locus": { "chromosome": "8", "start_pos": 56231841, "end_pos": 56225292, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027317.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027317.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026361.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026361.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 136, "start_aa": "Thr", "end_pos": 136, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr136", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 21, "start_aa": "Thr", "end_pos": 21, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr21", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 638, "start_aa": "Thr", "end_pos": 638, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr638", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LQI1", "url": "https://www.uniprot.org/uniprotkb/I3LQI1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621115", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621115", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K602-1", "protein_name": "Nitric oxide associated 1", "gene_name": "Noa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPARLGCRLLCGLLRGPAPAAACRGPARWLLEGKCEATICQRGSSLGRRAPPSSTATEDCEEGTDTEERFLFPEYVPERTPEEQLRELRELRELQQLQQEKERQRLQRREERLQQKLRAGLRALPVPELPDASVPPSGIYCSGCGAELHCQHPGLPGYLPGEKFRDAAQAEGGLARTVCQRCWLLVHHRRALRLQVSRDQYLELVSTALQRPGPALVLYMVDLLDLPDALLPDLPKLVGPKQLFVLGNKVDLLPQDAPGYLQRLRKRLWNDCIRAGLVVAPGHRGPQYPTGNEPLDEIKNQNPSSRSRTVVKDVRLISAKTGYGVEELISALQRSWRYRGDVYLVGTTNAGKSTLFNTLLESDYCTAKGSEAIDRATISPWPGTTLNLLKFPICNPTPYRMFKRQKRLQEDASKTEEDLSEQEQSQLNQLKKHGYIVGRVGRTFLHSRQQKEEVPFEFDADSLAFDMGNEPVVSVRKSTKQTELTPEDVKDAHWFYDTPGITKENCILNLLTEKEIDIVLPTHSIIPRTFVLKPGMVLFLGGIARVDFLQGNQSAWFTVVASNFLPVHISSLDKADALYEKHAGQELLLVPMGGKERMAQFPPLVAEDITLKGGGEAEAVADIKFSSAGWVAVTPYSEGTLHLRAYTPEGTALTVHPPVLPYIVNVKGQRIKKSAAYKTKKPPSLIHNLKKHR", "length": 694 }, "evidence": [ { "id": "A0A287A8M3", "url": "https://omabrowser.org/oma/group/A0A287A8M3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0XL92-1", "protein_name": "Nitric oxide associated 1", "gene_name": "NOA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLRLGRALLGRLRPARPWAARRGAAAAAGGEEERFVFLEYEPEPPPPPLLPPPPPPAASARGREAVRSRAAGRDGAREGDRVRGVADLSVPPSGVGCSGCGAELQCRDAAAPGFVPADKYRSLCAGPDGTAGLRDAVCQRCWVLEHGGRVVRLDLPPEQHRAVLSAALRSPPRHGRGPLLLYLLDVLELPDPVLPQLPALLSPEVPAAGLLVVGNKVDLLPADSPGHLGRLRQRVTAACLQAGISRAQLVDVRLVSAKTGFGIERLVSRLQRSWKCAGDVYLLGATNSGKSTLFNALLLSDYCKSRAPDVVNRATVSSWPGTTLNLLKFPIINPTCDRIFRRQERLKEEALKTEDQLSDKEKKHLNRLKKQGYLVGRVGRTFKPQKESSVIDFDPDLLSYSIDEDPCHIPKKHEEREEFTYNEVKDARWCFDTPGIVKENCVLNLLTEKEVKLVLPTQAIIPRTFILKPGMVLFLAALGRVDYLQGEKPAWFSVVASKLLPVHIAALSSADAMYEKYAGQEFFKVPMGGKERMKEFPPLVPQDITLKGTGTTEAVADIKLSSAGWVAVTAHAEEELLLRAYTPRGTTVVVREPPLLPYISNIRGARIPGTAAYRTKKPPSLVENLKTVGNR", "length": 631 }, "evidence": [ { "id": "A0A287A8M3", "url": "https://omabrowser.org/oma/group/A0A287A8M3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1ML97-1", "protein_name": "Nitric oxide associated 1 A", "gene_name": "NOA1A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTALWNSWPVPAVLRSSGATVRVRKGGSALLPTPAFLMLPARLARRLLCGFLRGPTPIVTRNGVRETLLERRCATDYSSRHSAGLGRGLPRGATATGGNPGGADLEESFLFPEYVLDSESEATLQDQLRELQQRQEEEERRIEQQREERRQQKLGAGRRVHQVVGHPDPTVPPSGQNCSGCGAELHCQDPGVPGYLPSEKFNSAVAEEGGLERTVCQRCWLLVHHRRALRLQVSQGQFLELVSAALRRPEPALVLYMVDLLDLPDTLLPHLPALVGPKQLIVLGNKVDLLPQDTPNYRQRLRERLWDECIGAGLLPPRGYRRAQRSSGDRPRGGEDNANLPSKSSTVLRDVRLISAKTGYGVEELISALQRSWRYRGDVYLVGSTNAGKSTLFNTLLESDYCIAKGAEAIDRATISPWPGTTLNLLKFPICNPTPYRMFQRQKRLKRDATEAEEDLSQQEQNKLNLLKKHGYLVGRVGRTFSYSEAQKDKAAFEFDADSFAFDMGNEPVLAADKSTKRVELTPEDVKDAHWFYDTPGITKENCILSLLTEKEVNIVLPTHSIIPRTFMLKPGMVLFLGALGRIDFLKGNQSAWFTVVASSFLPVHITSLDKADTMYQKHAGHMLLKVPVGGEERMAGFPPLVAEDITLDEGLGESEAVADIKFSSAGWVAVTPQFKDTLTLRGYTPQGTVLTVRRPLLPHIVNIKGKRIKGSVAYKTKRPPALMYNLQKKR", "length": 731 }, "evidence": [ { "id": "A0A287A8M3", "url": "https://omabrowser.org/oma/group/A0A287A8M3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8NC60-1", "protein_name": "Nitric oxide-associated protein 1", "gene_name": "NOA1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLPARLPFRLLSLFLRGSAPTAARHGLREPLLERRCAAASSFQHSSSLGRELPYDPVDTEGFGEGGDMQERFLFPEYILDPEPQPTREKQLQELQQQQEEEERQRQQRREERRQQNLRARSREHPVVGHPDPALPPSGVNCSGCGAELHCQDAGVPGYLPREKFLRTAEADGGLARTVCQRCWLLSHHRRALRLQVSREQYLELVSAALRRPGPSLVLYMVDLLDLPDALLPDLPALVGPKQLIVLGNKVDLLPQDAPGYRQRLRERLWEDCARAGLLLAPGHQGPQRPVKDEPQDGENPNPPNWSRTVVRDVRLISAKTGYGVEELISALQRSWRYRGDVYLVGATNAGKSTLFNTLLESDYCTAKGSEAIDRATISPWPGTTLNLLKFPICNPTPYRMFKRHQRLKKDSTQAEEDLSEQEQNQLNVLKKHGYVVGRVGRTFLYSEEQKDNIPFEFDADSLAFDMENDPVMGTHKSTKQVELTAQDVKDAHWFYDTPGITKENCILNLLTEKEVNIVLPTQSIVPRTFVLKPGMVLFLGAIGRIDFLQGNQSAWFTVVASNILPVHITSLDRADALYQKHAGHTLLQIPMGGKERMAGFPPLVAEDIMLKEGLGASEAVADIKFSSAGWVSVTPNFKDRLHLRGYTPEGTVLTVRPPLLPYIVNIKGQRIKKSVAYKTKKPPSLMYNVRKKKGKINV", "length": 698 }, "evidence": [ { "id": "A0A287A8M3", "url": "https://omabrowser.org/oma/group/A0A287A8M3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JJG9-1", "protein_name": "Nitric oxide-associated protein 1", "gene_name": "Noa1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPARLACGLLCGLRRGPAPAAACYGPARWLLEGKCEVPIRQRASSLGRRVPPSSTATEDYAEGPDTEERFLFPEYVPERTPEEQVRELQELRELQQLQQEKERERLQQREERLQQKLRAGFRTLPVPEFPDASVPPSGIYCSGCGAELHCQHPGLPGYLPEEKFRDAAQAEGGPARTVCQRCWLLVHHGRALRLQVSRDQYLELVSAALRRPGPALVLYMVNLLDLPDALLPDLPKLVGPKQLIVLGNKVDLLPQDAPGYLKRLRKRLWDDCIRAGLVVAPGHQGPQYPAGDEPLEEIKNQNPSSRSRTVVKDVRLISAKTGYGVEEMISALQRSWRYRGDVYLVGTTNAGKSTLFNTLLESDYCTAKGSEAIDRATISPWPGTTLNLLKFPICNPTPYRMFKRQRRLQEDATKAEEDLSEEEQSQLNQLKKHGYIVGRVGRTFSYSREQDEVPFEFDADSLAFDMGSEPVVSVCKSTKQIELTPEDVKDAHWFYDTPGITKESCILNLLTEKEINTVLPTHSIIPRTFVLKPGMVLFLGGIARIDFLQGNQSAWFTVVASNFLPVHITSLDKADALYEKHAGHELLLVPMGGKERMAQFPPLVAEDITLKGGGKFEAVADIKFSSAGWVAVTPYSEGTLHLRGHTPEGTALTVHPPVLPYIVNVKGQRMKKSVAYKTKKPPSLVHNLKKHR", "length": 693 }, "evidence": [ { "id": "A0A287A8M3", "url": "https://omabrowser.org/oma/group/A0A287A8M3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8M3", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3" } ], "pmid": "" }, { "name": "RNA folding chaperone", "id": "GO:0140691", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140691", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8M3", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8M3", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3" } ], "pmid": "" }, { "name": "matrix side of mitochondrial inner membrane", "id": "GO:0099617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099617", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8M3", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitochondrion organization", "id": "GO:0007005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007005", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8M3", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3" } ], "pmid": "" }, { "name": "mitochondrial small ribosomal subunit assembly", "id": "GO:0180026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0180026", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8M3", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" }, { "start_pos": 306, "end_pos": 308, "annotation": "n_glycosylation_sequon" }, { "start_pos": 555, "end_pos": 557, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A8M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3" }, { "id": "PF01926", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01926" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G", "eco_id": "ECO_0000259", "start_pos": 346, "end_pos": 397, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287A8M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A8M3" }, { "id": "PF21516", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21516" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NOA1/YqeH-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 560, "end_pos": 661, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 21, 136, 638 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 143, "end_pos": 145 }, { "start_pos": 306, "end_pos": 308 }, { "start_pos": 555, "end_pos": 557 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": 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"site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A8R8-1", "uniprot_ac": "A0A287A8R8", "uniprot_id": "A0A287A8R8_PIG", "mass": { "chemical_mass": 54781.0, "monoisotopic_mass": 54781.0 }, "refseq": {}, "gene_names": [ { "name": "ARHGAP8", "type": "recommended", "evidence": [ { "id": "A0A287A8R8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A8R8" } ] } ], "protein_names": [ { "name": "Rho GTPase activating protein 8", "type": "synonym", "evidence": [ { "id": "A0A287A8R8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A8R8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A8R8", "url": "https://www.uniprot.org/uniprotkb/A0A287A8R8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARHGAP8", "url": "https://www.uniprot.org/uniprotkb/A0A287A8R8", "locus": { "chromosome": "5", "start_pos": 4399744, "end_pos": 4450465, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000021", "url": "https://www.ensembl.org/id/ENSSSCG00000000021" } ] } } ], "crossref": [ { "id": "A0A287A8R8", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A8R8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000021", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000021", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00170", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00170", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04404", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04404", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100533202", "url": "https://www.ncbi.nlm.nih.gov/gene/100533202", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049592", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049592", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WLQNAYK", "url": "https://omabrowser.org/oma/group/WLQNAYK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45808", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45808", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45808:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45808:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13716", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13716", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A8R8", "url": "https://www.uniprot.org/uniprotkb/A0A287A8R8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8R8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8R8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJU7", "url": "https://www.uniprot.org/uniprotkb/F1SJU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJU7-1", "url": "https://www.uniprot.org/uniprotkb/F1SJU7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGSSGADIRTLRPGSPAPQQSVSRLALEELAEIELQRDEEAAAALGTVRRPLVAPSAGPDPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYLKYTLDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGRLPPPAKTPPPRPPLPTQQFGVSLQYLKDKNRGELIPPVMRFTVTYLREKGLRTEGLFRRSASIQTVREIQRLYNQGKPVNFDDYGDIHVPAVILKTFLRELPQPLLTFEAYEQILGITSVESSLRVTCCRQILQSLPGHNYAVLSYLMGFLHEVSRESIFNKMNSSNLACVFGLNLIWPSQGASSLSALVPLNLFTELLIEYYGKVFSSRQAQRELSDGGAPADGQGGPCPPDGPAAGLTRPPMPPRPLTVTGRPL", "length": 486, "header": "tr|A0A287A8R8-1|A0A287A8R8_PIG Isoform 1 of Rho GTPase activating protein 8 OS=Sus scrofa OX=9823 GN=ARHGAP8 PE=4 SV=1 CANONICAL=A0A287A8R8-1" }, "isoforms": [ { "isoform_ac": "A0A287A8R8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8R8/entry#A0A287A8R8-1", "sequence": { "sequence": 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"https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 131, "start_aa": "Thr", "end_pos": 131, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr131", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 137, "start_aa": "Thr", "end_pos": 137, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr137", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8V8", "url": "https://www.uniprot.org/uniprotkb/A0A287A8V8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { 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"MAETAKLQLFVKASEDGESVGHCPSCQRLFMILLLKGVPFTLTTVDTRRCPDVLKDFAPGSQLPILLYDGEAKTDTLQIEEFLEETLGPPEFPSLAPRYRESTAAGNDVFHKFSAFIKNPLPAQDDALYQQLLRALAKLDGYLRAPLEHELAREPQLRESRRRFLDGDQLTLADCGLLPKLHVVNTVCSHFRQAPIPAELRGVCRYLDSALQEKEFKYTCPHSAEILAAYRPAVRPR", "length": 237, "header": "tr|A0A287A988-1|A0A287A988_PIG Isoform 1 of Chloride intracellular channel protein 3 OS=Sus scrofa OX=9823 GN=CLIC3 PE=3 SV=1 CANONICAL=A0A287A988-1" }, "isoforms": [ { "isoform_ac": "A0A287A988-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A988/entry#A0A287A988-1", "sequence": { "sequence": "MAETAKLQLFVKASEDGESVGHCPSCQRLFMILLLKGVPFTLTTVDTRRCPDVLKDFAPGSQLPILLYDGEAKTDTLQIEEFLEETLGPPEFPSLAPRYRESTAAGNDVFHKFSAFIKNPLPAQDDALYQQLLRALAKLDGYLRAPLEHELAREPQLRESRRRFLDGDQLTLADCGLLPKLHVVNTVCSHFRQAPIPAELRGVCRYLDSALQEKEFKYTCPHSAEILAAYRPAVRPR", "length": 237, "header": "tr|A0A287A988-1|A0A287A988_PIG Isoform 1 of Chloride intracellular channel protein 3 OS=Sus scrofa OX=9823 GN=CLIC3 PE=3 SV=1 CANONICAL=A0A287A988-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 875334, "end_pos": 873527, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055950.1", "url": "https://www.ensembl.org/id/ENSSSCT00000055950.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040445.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040445.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., 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"field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A996-1", "uniprot_ac": "A0A287A996", "uniprot_id": "A0A287A996_PIG", "mass": { "chemical_mass": 75758.0, "monoisotopic_mass": 75758.0 }, "refseq": { "ac": "XP_003121223", "name": "beta-taxilin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121223" }, "gene_names": [ { "name": "TXLNB", "type": "recommended", "evidence": [ { "id": "A0A287A996", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A996" } ] }, { "name": "TXLNB", "type": "synonym", "evidence": [ { "id": "XP_003121223", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121223" } ] } ], "protein_names": [ { "name": "Taxilin beta", "type": "synonym", "evidence": [ { "id": "A0A287A996", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A996/entry#names_and_taxonomy" } ] }, { "name": "beta-taxilin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003121223", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121223" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A996", "url": "https://www.uniprot.org/uniprotkb/A0A287A996" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TXLNB", "url": "https://www.uniprot.org/uniprotkb/A0A287A996", "locus": { "chromosome": "1", "start_pos": 25285301, "end_pos": 25228615, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004143", "url": "https://www.ensembl.org/id/ENSSSCG00000004143" } ] } } ], "crossref": [ { "id": "A0A287A996", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A996", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004143", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004143", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511845", "url": "https://www.ncbi.nlm.nih.gov/gene/100511845", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026183", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026183", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511845", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511845", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SPKMEAN", "url": "https://omabrowser.org/oma/group/SPKMEAN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A996", "url": "https://www.orthodb.org/?gene=A0A287A996", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16127", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16127", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16127:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16127:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09728", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09728", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003121223", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121223", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A996", "url": "https://www.uniprot.org/uniprotkb/A0A287A996", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A996-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A996-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S6Z6", "url": "https://www.uniprot.org/uniprotkb/F1S6Z6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S6Z6-1", "url": "https://www.uniprot.org/uniprotkb/F1S6Z6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METSQSAQLSGDPESTPPGNTSALTSQNGLEKQGDQDSSTPLPPPEEKAGVQAEQGAHDISEELNRQLEDIISMYGSAAGTAGKEGATTATEQPENTEPPDNEDRDYEEATDEMEREPVASGEPLTAKEPVSNKEQKLEKKILKGLGKEANLLMQNLNKLPTSEEKLDFLFKKYAELLDEHRTEQKKLKLLQKKQVQIQKEKDQLQSEHSRAILARSKLESLCRELQRHNKTLKEETLQRAREEEEKRKEITSHFQSTLTDIQAQIEQQSERNMKLCQENTELAEKLKSIIDQYELREEHLDKIFKHRELQQKLVDAKLEQAQEMMKEAEERHKREKEYLLNQAAEWKLQAKVLKEQETVLQAQLTLYSGRFEEFQSTLTKSNEVFATFKQEMDKTTKKMKKLEKETATWKARFENCNKALLDMIEEKTLRAKEYECFVMKIGRLENLCRALQEERNELYKKIREAKMPEKDDQSQHTSDEELESNTFVSEEVDAAAEEANRVHNAVQNLAAAFMVIHRPESTVDGSKEIPAEVGGPPEGGSTTLKEPEQAPLSPRGLSESPLPPPRPQAETAGGHEAEPPLRARSPPAESGAEAQSFRLPTEAQVDLQPRKPQAAASGQALEPLAEASLQVMEADHPAPPPAAGEHVPTAEGLPGGDTALPQGPEVADTNLEGVD", "length": 676, "header": "tr|A0A287A996-1|A0A287A996_PIG Isoform 1 of Taxilin beta OS=Sus scrofa OX=9823 GN=TXLNB PE=1 SV=1 CANONICAL=A0A287A996-1" }, "isoforms": [ { "isoform_ac": "A0A287A996-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A996/entry#A0A287A996-1", "sequence": { "sequence": "METSQSAQLSGDPESTPPGNTSALTSQNGLEKQGDQDSSTPLPPPEEKAGVQAEQGAHDISEELNRQLEDIISMYGSAAGTAGKEGATTATEQPENTEPPDNEDRDYEEATDEMEREPVASGEPLTAKEPVSNKEQKLEKKILKGLGKEANLLMQNLNKLPTSEEKLDFLFKKYAELLDEHRTEQKKLKLLQKKQVQIQKEKDQLQSEHSRAILARSKLESLCRELQRHNKTLKEETLQRAREEEEKRKEITSHFQSTLTDIQAQIEQQSERNMKLCQENTELAEKLKSIIDQYELREEHLDKIFKHRELQQKLVDAKLEQAQEMMKEAEERHKREKEYLLNQAAEWKLQAKVLKEQETVLQAQLTLYSGRFEEFQSTLTKSNEVFATFKQEMDKTTKKMKKLEKETATWKARFENCNKALLDMIEEKTLRAKEYECFVMKIGRLENLCRALQEERNELYKKIREAKMPEKDDQSQHTSDEELESNTFVSEEVDAAAEEANRVHNAVQNLAAAFMVIHRPESTVDGSKEIPAEVGGPPEGGSTTLKEPEQAPLSPRGLSESPLPPPRPQAETAGGHEAEPPLRARSPPAESGAEAQSFRLPTEAQVDLQPRKPQAAASGQALEPLAEASLQVMEADHPAPPPAAGEHVPTAEGLPGGDTALPQGPEVADTNLEGVD", "length": 676, "header": "tr|A0A287A996-1|A0A287A996_PIG Isoform 1 of Taxilin beta OS=Sus scrofa OX=9823 GN=TXLNB PE=1 SV=1 CANONICAL=A0A287A996-1" }, "locus": { "chromosome": "1", "start_pos": 25282890, "end_pos": 25231816, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064833.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064833.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040513.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040513.1" } ] } }, { "isoform_ac": "F1S6Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A996/entry#F1S6Z6-1", "sequence": { "sequence": "METSQSAQLSGDPESTPPGNTSALTSQNGLEKQGDQDSSTPLPPPEEKAGVQAEQGAHDISEELNRQLEDIISMYGSAAGTAGKEGATTATEQPENTEPPDNEDRDYEEATDEMEREPVASGEPLTAKEPVSNKEQKLEKKILKGLGKEANLLMQNLNKLPTSEEKLDFLFKKYAELLDEHRTEQKKLKLLQKKQVQIQKEKDQLQSEHSRAILARSKLESLCRELQRHNKTLKEETLQRAREEEEKRKEITSHFQSTLTDIQAQIEQQSERNMKLCQENTELAEKLKSIIDQYELREELLNQAAEWKLQAKVLKEQETVLQAQLTLYSGRFEEFQSTLTKSNEVFATFKQEMDKTTKKMKKLEKETATWKARFENCNKALLDMIEEKTLRAKEYECFVMKIGRLENLCRALQEERNELYKKIREAKMPEKDDQSQHTSDEELESNTFVSEEVDAAAEEANRVHNAVQNLAAAFMVIHRPESTVDGSKEIPAEVGGPPEGGSTTLKEPEQAPLSPRGLSESPLPPPRPQAETAGGHEAEPPLRARSPPAESGAEAQSFRLPTEAQVDLQPRKPQAAASGQALEPLAEASLQVMEADHPAPPPAAGEHVPTAEGLPGGDTALPQGPEVADTNLEGVD", "length": 636, "header": "tr|F1S6Z6-1|A0A287A996_PIG Computationally mapped isoform of Taxilin beta OS=Sus scrofa OX=9823 GN=TXLNB PE=1 SV=3 CANONICAL=A0A287A996-1" }, "locus": { "chromosome": "1", "start_pos": 25282890, "end_pos": 25231816, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004578.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004578.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004475.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004475.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S6Z6", "url": "https://www.uniprot.org/uniprotkb/F1S6Z6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511845", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511845", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K2T1-1", "protein_name": "Taxilin beta", "gene_name": "Txlnb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METNHPDQLSVEQPNPPGDSSPLNQNVPGKQDVQQSSTSGQAAEQEASPHPEKGDHDISEELSRQLEDIINMYGSAASPTGKEGTSETKEQPQNTEAPDNEDGDYEETTEETDREPTAPEEPATVKGPVSNKEQKLEKKILKGLGKEANLLMQNLNKLQAPEEKLDFLFKKYAELLDEHRTEQKKLKLLLKQQAQTQREKDQLQSEHNRAILARSKLESLCRELQRHNKTLKEETLQRAREEEEKRKEITSHFQSTLTDIQTQIEQQSERNMKLCQENTELAEKLKSIIDQYELREEHLDKIFKHRELQQKLVDAKLEEAQELMQEAEERHRREKEYVFILLLLNQAAEWKLQAKVLKEQETVLQAQLTLYSGRFEEFQSTLTKSNEVFATFKQEMDNTTKKMKKLEKDTATWKARFENCNKALLDMIEEKALRAKEYECFVMKIQRLENLCRALQEERKELYKKIRDAKMSEKEDQVQHTSDEEPESKVSEDKQMDVEAANGVQNAVKNLATAFAILHHPEFTPDQSRERQPAVNGPPGGSDLTHQHTEPAHLNHPNPSSVSGSPQPPVGSQAGSEGGCEAAPAPTACCTPAEAELQSQGLSAGNPPDPKPQKPEAKASGQVPLSPAQGSLAVVEAKCDISPSPESERDPAVVPGCESKEHPPPEVPDIPLGPNTGLPREPDACLNGVE", "length": 690 }, "evidence": [ { "id": "A0A287A996", "url": "https://omabrowser.org/oma/group/A0A287A996/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M2B5F5-1", "protein_name": "Taxilin beta b isoform 1", "gene_name": "txlnbb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEMETCAQSANGEMTEDLSQQLQEIINTYQLNEQKHETEEDEMEEEEEEPKSREQKMEKKMLKGLGKEAMLLMQSLNKLGTPEKKLDTLIKKHAELLEEHRSDQKQLKMLQKKFLQVLKEKDQLQGEHSRAVLARSKLESLCRELQRHNKTLKEETLQRCREDDLKRKEITTHFQSTLSDIQSQIEEHSSRNNKLCQENSELAEKLKDLISKYDQREANLEKVFKHRDLQQKLLETKLAQVNMILKESEEKHKLEKEHLLKQAAEAKLHVKLLKEQEVDMKAQLAVYSEKFDELQGSVSKSNGVYASFKQDMDKMGKKMKKLEKEASAWKSRFDGCNKALVDMVADKTLKEKEFELFTLKTQKLENLCRALQDERKTLIQKLQQPDTENTASPPSINTEKPTEKAAETKEEAAETKDQAASITEAVSKEANPSSEQVSDPPSETTLLNKELKSLKDEKARLLELAEVFSIRRHLPPQAYEDPSSCLEEEKQVDMEETGSLTDTLSEEHQELRDKDMLSVD", "length": 520 }, "evidence": [ { "id": "A0A287A996", "url": "https://omabrowser.org/oma/group/A0A287A996/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1N4G3-1", "protein_name": "Taxilin beta", "gene_name": "TXLNB", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MESNQPGQLSGEPPSTPVRDSSALSSQNGLEKQNDLDRSTPLPAPEQAAGIQLERGPHDISEELNRQLEDIINTYGSTAGAAGKEGTTMVKEQPENTDPPDNEDGDCEEAPEEVEREPAATGEPSTAKEPASNKEQKLEKKILKGLGKEANLLMQNLNKLQTPEEKFDFLFKKYAELLDEHRTEQRKLKLLQKKQAQIQKEKDQLQGEHSRAILARSKLESLCRELQRHNKTLKEETLQRAREEEEKRKEITSHFQNTLTDIQAQIEQQSERNMKLCQENTELAEKLKSIIDQYELREEHLDKIFKHRELQQKLVDAKLEQAQEMMKEAEERHKREKEYLLNQAAEWKLQAKVLKEQETVLQAQLTLYSGRFEEFQSTLTKSNEVFATFKQEMDKTTKKMKKLEKDTATWKARFENCNKALLDMIEEKALRAKEYECFVMKIGRLENLCRALQEERNELYKKIREAKMPKKDDQGQHTSDDEPNTSVNEEADAEEANNVHKAVQNLAAAFMIMHCPESTLDVSKEIHPEVDSPPGDCDTALRGLEQAPLSPACHSEIPLPPPNPQAEGKRVSETEPTLRAETGAEAQDDGLPGAAPADQQNRKPEAAASSQAPKAPAKPSLPVVKANEQPWKPEAASGQAQEPTAEASLPVMEVNGQSRKPEAATSGQALEPPAETFLCVMEAKCSAPPPAVGAHLPARESGCEPMTQPPPTAEGLPGGASGGPPLPKVADTNLEGVD", "length": 738 }, "evidence": [ { "id": "A0A287A996", "url": "https://omabrowser.org/oma/group/A0A287A996/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8N3L3-1", "protein_name": "Beta-taxilin", "gene_name": "TXLNB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEANHSEQLSAERQSTPPGDSSSLPSHNGLEKEDGQDSPTPVQPPEKEASVHPDISEELNRQLEDIINTYGSAASTAGKEGSARASEQPENAESPDNEDGDCEETTEEAGREPVASGEPPTVKEPVSNKEQKLEKKILKGLGKEANLLMQNLNKLQTPEEKFDFLFKKYAELLDEHRTEQKKLKLLQKKQVQIQKEKDQLQGEHSRAILARSKLESLCRELQRHNKTLKEEALQRAREEEEKRKEITSHFQSTLTDIQGQIEQQSERNMKLCQENTELAEKLKSIIDQYELREEHLDKIFKHRELQQKLVDAKLEQAQEMMKEAEERHKREKEYLLNQAAEWKLQAKVLKEQETVLQAQLTLYSGRFEEFQSTLTKSNEVFATFKQEMDKTTKKMKKLEKDTATWKARFENCNKALLDMIEEKALRAKEYECFVMKIGRLENLCRALQEERNELHKKIRDAEISEKDDQSQHNSDEEPESNVSVDQEIDAEEVNSVQTAVKNLATAFMIIHHPESTPHQSKETQPEIGSSQESADAALKEPEQPPLIPSRDSESPLPPLTPQAEAEGGSDAEPPSKASNSPAGLGAETQCEGLPVGAQADQASWKPEAEASGQAPQAPTEASLQKMEADVPAPACAAEEHVAAMVPACEPSRQPPRAAAEELPVGASAGPQPRNVADTNLEGVD", "length": 684 }, "evidence": [ { "id": "A0A287A996", "url": "https://omabrowser.org/oma/group/A0A287A996/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VBT1-1", "protein_name": "Beta-taxilin", "gene_name": "Txlnb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEINHPDQLSVEHPTPPGDSSSLNQNGPGKQDGERCSTSGQAPEQEGSLHPEKGAHDVAEELSRQLEDIISTYGSAASPRGKESTSETKEQPPNTEAPDNEDVDYEETTEEIDREPTAPEEPAAAKEPVSNKEQKLEKKILKGLGKEANLLMQNLNKLQAPEEKLDFLFKKYTELLDEHRTEQKKLKLLLKQQAQTQREKDQLQSEHNRAVLARSKLESLCRELQRHNKTLKEETLQRAREEEEKRKEITSHFQTTLTDIQTQIEQQSERNMKLCQENTELAEKLKSIIDQYELREEHLDKIFKHRELQQKLVDAKLEEAQELMQEAEERHRREKEYLLNQAAEWKLQAKVLKEQETVLQAQLTLYSGRFEEFQSTLTKSNEVFATFKQEMDKTTKKMKKLEKDTATWKARFENCNKALLDMIEEKALRAKEYECFVMKIQRLENLCRALQEERKELYKKIREAKMSEKEDQVQRTSEEEPEPSVSENEEVDAEEANSFQKAVENLATAFTILHHPEFTPDQPTERQLAVNGPQSGSDVTHQHPETARLNHPSLPADSGSPRPPVGAQAVAEGVCEATPAPTASCTPAEAELQSQGLPAENTPGPKPHKPEANTSGQAPLSPAQGSLSVVEAKYDISPSPESEGDSAVVPGCESREQPPPEVTDIPVGPSTGLPREPDACLNGVD", "length": 685 }, "evidence": [ { "id": "A0A287A996", "url": "https://omabrowser.org/oma/group/A0A287A996/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], 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"glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9H4", "url": "https://www.uniprot.org/uniprotkb/A0A287A9H4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627585", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627585", "resource": "KEGG Pathway" }, { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" }, { "id": "R-SSC-72203", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72203", "resource": "Reactome", "description": "Processing of Capped Intron-Containing Pre-mRNA" }, { "id": "R-SSC-9770562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "resource": "Reactome", "description": "mRNA Polyadenylation" } ], "orthologs": [ { "uniprot_canonical_ac": "G3H605-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "Hnrnph2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": 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"https://www.ncbi.nlm.nih.gov/protein/XP_020955289", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A9S1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9S1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9S1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRMKLPLKPTHPAEPPPEAEEPEADARLSAKAPPRRRRDCRPPPPPPPPPPSGQLRGPQPPPPPGGLGPPVAGGAAAGAGMPGGGGGPTAALREQERVYEWFGLVLGSAQRLEFMCGLLDLCNPLELRFLGSCLEDLARKDYHYLRDSEAKANGLSDPGPLADFREPAVRSRLIVYLALLGSENREAAGRLHRLLPQVDSVLKSLRAARGEGSRGGAEDKPGEDCNGEEDAEKDGSGPEGSGAEPRRGSGLGFRAQEELLLLFTMASLHPAFSFHQRVTLREHLERLRAALRGGPEDGGVEAESCNFAGPRAQNDSAHSDYLQSGEASLLEQAPIPHDGLTVAPHRTQREAVHIEKIMLKGVQRKRADKYWEYTFKVNWSDLSVTTVTKTHQELQEFLLKLPKELSSETFDKTILRALNQGSLKREERRHPDLEPILRQLFSTSSQAFLQNQKVHSFFQSISSDPLHNLNNLQSSLKTSKILEHLKEDSSEASSQEEDVLQHTVIHKKHPGKSPIANTIGTSCSPLDGLTLQYSEQNGIVDWRKQTCTTVQHPEHCVALADQHSTEKRSLSSINKKKGKPQIEKEKIKKTDNRLNSRMNGIRLTTPQHAHGGSVKDVNLDIGSGHDTCGETSSESYSSPSSPRHDGRESFESEEEKDRDTDSNSEDSGNPSTTRFTGYGSVNQTVPVKPPVQIASLGNDNANLLEDPLNSPKYQHISFMPALHCVMHNGAQKSEVVIPPPKSADGKTLGMLVPSPVAISAIRESSSTPVGILGPAASTAESEKHLELLASPLPIPSTFLPHSSAPALHLTIQRLKLPPPQGSSEGCTVNIPQQPTGSLSVGSPNTAFIPVHSPGSFPGSPVATTDPITKSASQVVGLNQMVPPIEGNTGPVPQPTNVKVVLPAAGLSAAQPPASYTLPGSPLAAGVLPSQSSTVLSTAATSVPSAGTGISQAQATVPPAVPTHTPGPAPSPSPALTHSTAQSDSTSYISAVGNTNANGTILPPQQVGSGPCGSCGRRCSCGTNGNLQLNSYYYPNPMPGPMYRVPSFFTLPSICNGSYLNQAHQSNGNQLPFFLPQTPYANGLVHDPVMGSQASYGMQQMAGFGRFYPVYPPSVVANTSGSGPKKNGNVSCYNCGVSGHYAQECKQSSMEASQQGTYRLRYAPPLPPSNDTLDSAD", "length": 1177, "header": "tr|A0A287A9S1-1|A0A287A9S1_PIG Isoform 1 of Zinc finger CCHC domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZCCHC2 PE=4 SV=2 CANONICAL=A0A287A9S1-1" }, "isoforms": [ { "isoform_ac": "A0A287A9S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9S1/entry#A0A287A9S1-1", "sequence": { "sequence": "MLRMKLPLKPTHPAEPPPEAEEPEADARLSAKAPPRRRRDCRPPPPPPPPPPSGQLRGPQPPPPPGGLGPPVAGGAAAGAGMPGGGGGPTAALREQERVYEWFGLVLGSAQRLEFMCGLLDLCNPLELRFLGSCLEDLARKDYHYLRDSEAKANGLSDPGPLADFREPAVRSRLIVYLALLGSENREAAGRLHRLLPQVDSVLKSLRAARGEGSRGGAEDKPGEDCNGEEDAEKDGSGPEGSGAEPRRGSGLGFRAQEELLLLFTMASLHPAFSFHQRVTLREHLERLRAALRGGPEDGGVEAESCNFAGPRAQNDSAHSDYLQSGEASLLEQAPIPHDGLTVAPHRTQREAVHIEKIMLKGVQRKRADKYWEYTFKVNWSDLSVTTVTKTHQELQEFLLKLPKELSSETFDKTILRALNQGSLKREERRHPDLEPILRQLFSTSSQAFLQNQKVHSFFQSISSDPLHNLNNLQSSLKTSKILEHLKEDSSEASSQEEDVLQHTVIHKKHPGKSPIANTIGTSCSPLDGLTLQYSEQNGIVDWRKQTCTTVQHPEHCVALADQHSTEKRSLSSINKKKGKPQIEKEKIKKTDNRLNSRMNGIRLTTPQHAHGGSVKDVNLDIGSGHDTCGETSSESYSSPSSPRHDGRESFESEEEKDRDTDSNSEDSGNPSTTRFTGYGSVNQTVPVKPPVQIASLGNDNANLLEDPLNSPKYQHISFMPALHCVMHNGAQKSEVVIPPPKSADGKTLGMLVPSPVAISAIRESSSTPVGILGPAASTAESEKHLELLASPLPIPSTFLPHSSAPALHLTIQRLKLPPPQGSSEGCTVNIPQQPTGSLSVGSPNTAFIPVHSPGSFPGSPVATTDPITKSASQVVGLNQMVPPIEGNTGPVPQPTNVKVVLPAAGLSAAQPPASYTLPGSPLAAGVLPSQSSTVLSTAATSVPSAGTGISQAQATVPPAVPTHTPGPAPSPSPALTHSTAQSDSTSYISAVGNTNANGTILPPQQVGSGPCGSCGRRCSCGTNGNLQLNSYYYPNPMPGPMYRVPSFFTLPSICNGSYLNQAHQSNGNQLPFFLPQTPYANGLVHDPVMGSQASYGMQQMAGFGRFYPVYPPSVVANTSGSGPKKNGNVSCYNCGVSGHYAQECKQSSMEASQQGTYRLRYAPPLPPSNDTLDSAD", "length": 1177, "header": "tr|A0A287A9S1-1|A0A287A9S1_PIG Isoform 1 of Zinc finger CCHC domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZCCHC2 PE=4 SV=2 CANONICAL=A0A287A9S1-1" }, "locus": { "chromosome": "1", "start_pos": 159022072, "end_pos": 158966816, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065543.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065543.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040558.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040558.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 90, "start_aa": "Thr", "end_pos": 90, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr90", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9S1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9S1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625613", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625613", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9S1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9S1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9S1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9S1" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9S1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9S1" } ], "pmid": "" }, { "name": "phosphatidylinositol binding", "id": "GO:0035091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035091", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9S1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9S1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1056, "end_pos": 1058, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1118, "end_pos": 1120, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1129, "end_pos": 1131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1170, "end_pos": 1172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 379, "end_pos": 381, "annotation": "n_glycosylation_sequon" }, { "start_pos": 683, "end_pos": 685, "annotation": "n_glycosylation_sequon" }, { "start_pos": 998, "end_pos": 1000, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287A9S1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A9S1" }, { "id": "PS50158", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50158" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCHC-type", "eco_id": "ECO_0000259", "start_pos": 1132, "end_pos": 1147, "start_aa": "Cys", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 90 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1056, "end_pos": 1058 }, { "start_pos": 1118, "end_pos": 1120 }, { "start_pos": 1129, "end_pos": 1131 }, { "start_pos": 1170, "end_pos": 1172 }, { "start_pos": 315, "end_pos": 317 }, { "start_pos": 379, "end_pos": 381 }, { "start_pos": 683, "end_pos": 685 }, { "start_pos": 998, "end_pos": 1000 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A9U1-1", "uniprot_ac": "A0A287A9U1", "uniprot_id": "A0A287A9U1_PIG", "mass": { "chemical_mass": 49760.0, "monoisotopic_mass": 49760.0 }, "refseq": {}, "gene_names": [ { "name": "WIPF3", "type": "recommended", "evidence": [ { "id": "A0A287A9U1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A9U1" } ] } ], "protein_names": [ { "name": "WAS/WASL interacting protein family member 3", "type": "synonym", "evidence": [ { "id": "A0A287A9U1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A9U1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A9U1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9U1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WIPF3", "url": "https://www.uniprot.org/uniprotkb/A0A287A9U1", "locus": { "chromosome": "18", "start_pos": 42991498, "end_pos": 43071331, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016685", "url": "https://www.ensembl.org/id/ENSSSCG00000016685" } ] } } ], "crossref": [ { "id": "A0A287A9U1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A9U1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016685", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016685", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22077", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22077", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003882", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003882", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028290", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028290", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PASHQNC", "url": "https://omabrowser.org/oma/group/PASHQNC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23331", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23331", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23331:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23331:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02205", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02205", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A9U1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9U1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9U1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"MPADPGPEAGSGWPGFLMSCLKGPHVILKMEAMKIVHPEKFPELPAAAPCFPPAPRPTPALAPKRAWPSDTEIIANQACGGDMPALEGAPRTPPLPRRPRKGSAELGFPRVAPADEVIANQYVIRPGSAASGGPAASAPAAGEPLECPTCGHTYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFISCPTCRRETVLFTDYGLAALAVNTSILSRLPPEALTAPSGGQWGGEPEGSCYQTFRQYCGAACTCHVRNPLSACSIM", "length": 265, "header": "tr|A0A287AA96-1|A0A287AA96_PIG Isoform 1 of RING finger protein 208 OS=Sus scrofa OX=9823 GN=RNF208 PE=4 SV=1 CANONICAL=A0A287AA96-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 687271, "end_pos": 686477, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065172.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065172.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040732.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040732.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": 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"MEVPRLDHALNSPTSPCEEVIKNLSLEAIQLCDRDGNKSQDSGIAEMEELPVPHNIKISNITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRGHWFLSPRTEYTVAVQTASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKAEVISGRMLKFSVFYRNQHKEYFDYIREHHANAMQPAVKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAAEKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEEDGMLVYHHAQDVILEVIYTDPVDLSLGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR", "length": 376, "header": "tr|A0A287AA99-1|A0A287AA99_PIG Isoform 1 of Phytanoyl-CoA 2-hydroxylase interacting protein like OS=Sus scrofa OX=9823 GN=PHYHIPL PE=1 SV=3 CANONICAL=A0A287AA99-1" }, "isoforms": [ { "isoform_ac": "A0A287AA99-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA99/entry#A0A287AA99-1", "sequence": { "sequence": "MEVPRLDHALNSPTSPCEEVIKNLSLEAIQLCDRDGNKSQDSGIAEMEELPVPHNIKISNITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRGHWFLSPRTEYTVAVQTASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKAEVISGRMLKFSVFYRNQHKEYFDYIREHHANAMQPAVKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAAEKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEEDGMLVYHHAQDVILEVIYTDPVDLSLGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR", "length": 376, "header": "tr|A0A287AA99-1|A0A287AA99_PIG Isoform 1 of Phytanoyl-CoA 2-hydroxylase interacting protein like OS=Sus scrofa OX=9823 GN=PHYHIPL PE=1 SV=3 CANONICAL=A0A287AA99-1" }, "locus": { "chromosome": "14", "start_pos": 62622383, "end_pos": 62526138, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046544.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046544.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040723.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040723.3" } ] } }, { "isoform_ac": "A0A4X1U285-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA99/entry#A0A4X1U285-1", "sequence": { "sequence": "SSCDSEYVARNKSQDSGIAEMEELPVPHNIKISNITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRGHWFLSPRTEYTVAVQTASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKAEVISGRMLKFSVFYRNQHKEYFDYIREHHANAMQPAVKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAAEKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEEDGMLVYHHAQDVILEVIYTDPVDLSLGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR", "length": 350, "header": "tr|A0A4X1U285-1|A0A4X1U285_PIG Computationally mapped isoform of Phytanoyl-CoA 2-hydroxylase interacting protein like OS=Sus scrofa OX=9823 GN=PHYHIPL PE=1 SV=1 CANONICAL=A0A287AA99-1" }, "locus": { "chromosome": "14", "start_pos": 62622383, "end_pos": 62526900, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011175.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011175.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010885.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010885.4" } ] } }, { "isoform_ac": "A0A5G2QDT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA99/entry#A0A5G2QDT6-1", "sequence": { "sequence": "MEELPVPHNIKISNITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRGHWFLSPRTEYTVAVQTASKQVDGDYVVSEWSEIIEFCTAVALPLLFQAVIMFIFSYREHHANAMQPAVKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAAEKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEEDGMLVYHHAQDVILEVIYTDPVDLSLGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR", "length": 308, "header": "tr|A0A5G2QDT6-1|A0A287AA99_PIG Computationally mapped isoform of Phytanoyl-CoA 2-hydroxylase interacting protein like OS=Sus scrofa OX=9823 GN=PHYHIPL PE=1 SV=2 CANONICAL=A0A287AA99-1" }, "locus": { "chromosome": "14", "start_pos": 62622383, "end_pos": 62602266, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066452.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066452.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060215.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060215.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDT6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDT6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525186", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525186", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AA99", "url": "https://www.uniprot.org/uniprotkb/A0A287AA99" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 371, "end_pos": 373, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": 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"sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 23, "end_pos": 25 }, { "start_pos": 371, "end_pos": 373 }, { "start_pos": 37, "end_pos": 39 }, { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AAB3-1", "uniprot_ac": "A0A287AAB3", "uniprot_id": "A0A287AAB3_PIG", "mass": { "chemical_mass": 12912.0, "monoisotopic_mass": 12912.0 }, "refseq": { "ac": "XP_020953504", "name": "kinocilin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953504" }, "gene_names": [ { "name": "KNCN", "type": "recommended", "evidence": [ { "id": "A0A287AAB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAB3" } ] }, { "name": "KNCN", "type": "synonym", "evidence": [ { "id": "XP_020953504", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953504" } ] } ], "protein_names": [ { "name": "Kinocilin", "type": "synonym", "evidence": [ { "id": "A0A287AAB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAB3/entry#names_and_taxonomy" } ] }, { "name": "kinocilin", "type": "synonym", "evidence": [ { "id": "XP_020953504", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953504" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AAB3", "url": "https://www.uniprot.org/uniprotkb/A0A287AAB3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KNCN", "url": "https://www.uniprot.org/uniprotkb/A0A287AAB3", "locus": { "chromosome": "6", "start_pos": 164943161, "end_pos": 164939388, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000058745", "url": "https://www.ensembl.org/id/ENSSSCG00000058745" } ] } } ], "crossref": [ { "id": "A0A287AAB3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AAB3", "database": "AlphaFoldDB", "categories": [] }, { "id": "110261449", "url": "https://www.ncbi.nlm.nih.gov/gene/110261449", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027837", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027837", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110261449", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261449", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RIHPNPG", "url": "https://omabrowser.org/oma/group/RIHPNPG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AAB3", "url": "https://www.orthodb.org/?gene=A0A287AAB3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR38497", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38497", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR38497:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38497:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15033", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15033", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020953504", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953504", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AAB3", "url": "https://www.uniprot.org/uniprotkb/A0A287AAB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDIPISSRDFHCLQLACVALGLVAGSIIIGVSVSKAAAALGGIFIGAAGLGLLILAYPFLRSRFNLDHILPAIGENLRIHPQPGPDQREGRSSANGNREGARSSLSTVSRTLEKLKPGGRGAGEG", "length": 125, "header": "tr|A0A287AAB3-1|A0A287AAB3_PIG Isoform 1 of Kinocilin OS=Sus scrofa OX=9823 GN=KNCN PE=4 SV=1 CANONICAL=A0A287AAB3-1" }, "isoforms": [ { "isoform_ac": "A0A287AAB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAB3/entry#A0A287AAB3-1", "sequence": { "sequence": "MDIPISSRDFHCLQLACVALGLVAGSIIIGVSVSKAAAALGGIFIGAAGLGLLILAYPFLRSRFNLDHILPAIGENLRIHPQPGPDQREGRSSANGNREGARSSLSTVSRTLEKLKPGGRGAGEG", "length": 125, "header": "tr|A0A287AAB3-1|A0A287AAB3_PIG Isoform 1 of Kinocilin OS=Sus scrofa OX=9823 GN=KNCN PE=4 SV=1 CANONICAL=A0A287AAB3-1" }, "locus": { "chromosome": "6", "start_pos": 164942157, "end_pos": 164939388, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098338.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098338.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078317.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078317.1" } ] } }, { "isoform_ac": "A0A5G2QBR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAB3/entry#A0A5G2QBR3-1", "sequence": { "sequence": "MDIPISSRDFHCLQLACVALGLVAGSIIIGVSVSKAAAALGGIFIGAAGLGLLILAYPFLRSRFNLDHILPAIGECDWSWNLRIHPQPGPDQREGRSSANGNREGARSSLSTVSRTLEKLKPGGRGAGEG", "length": 130, "header": "tr|A0A5G2QBR3-1|A0A287AAB3_PIG Computationally mapped isoform of Kinocilin OS=Sus scrofa OX=9823 GN=KNCN PE=4 SV=1 CANONICAL=A0A287AAB3-1" }, "locus": { "chromosome": "6", "start_pos": 164942157, "end_pos": 164939388, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103065.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103065.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079399.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079399.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBR3" } ], "reference": [ { "type": "PubMed", "id": "32543654", 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24123", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24123:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24123:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198:SF192", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198:SF192", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013839817", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013839817", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AAD4", "url": "https://www.uniprot.org/uniprotkb/A0A287AAD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAD4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B2X1", "url": "https://www.uniprot.org/uniprotkb/A0A287B2X1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B2X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B2X1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B787", "url": "https://www.uniprot.org/uniprotkb/A0A287B787", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B787-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B787-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVLKLTDQPPLVQAIFSGDPEEIRMLIHKTEDVNALDSEKRTPLHVAAFLGDAEIIELLILSGARVNAKDNMWLTPLHRAVASRSEEAVQVLIKHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLINHGAEVTCKDKKGYTPLHAAASNGQITVVKHLLNLGVEIDEINVYGNTALHLACYNGQDAVVNELTDYGANVNQPNNSGFTPLHFAAASTHGALCLELLVNNGADVNIQSKDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNTPLHVAARYGHELLINTLITSGADTAKCGIHSMFPLHLAALNAHSDCCRKLLSSGFEIDTPDKFGRTCLHAAAAGGNVECIKLLQSSGADFHKKDKCGRTPLHYAAANCHFHCIETLVTTGASVNETDDWGRTALHYAAASDMDRNKSLLGNAHENSEELERARELKEKEAALCLEFLLQNDANPSIRDKEGYNSIHYAAAYGHRQCLELLLERTNSVFEESDSGATKSPLHLAAYNGHHQALEVLLQSLVDLDIRDEKGRTALDLAAFKGHTECVEALINQGASIFVKDNVTKRTPLHASVINGHTLCLRLLLEIADNPEVVDVKDAKGQTPLMLAVAYGHIDAVSLLLEKEANVDAVDIMGCTALHRGIMTGHEECVQMLLEQEVSILCKDSRGRTPLHYAAARGHATWLSELLQMALSEEDCSFKDNQGYTPLHWACYNGNENCIEVLLEQKCFRKFIGNPFTPLHCAIINDHENCASLLLGAIDSNIVNCRDDKGRTPLHAAAFADHVECLQLLLRHNAQVNAADNSGKTALMMAAENGQAGAVDILVNSAQADLTVKDKDLNTPLHLASSKGHEKCALLILDKIQDESLINAKNNALQTPLHVAARNGLKVVVEELLAKGACVLAVDENGHTPALACAPNKEVADCLALILATMMTFSPSSTMTAVNFVCFKKDSLSRTTLSNLGSMVSLCSNNVGSEDGYNENDSDSETF", "length": 1056, "header": "tr|A0A287AAD4-1|A0A287AAD4_PIG Isoform 1 of Ankyrin repeat domain 44 OS=Sus scrofa OX=9823 GN=ANKRD44 PE=4 SV=2 CANONICAL=A0A287AAD4-1" }, "isoforms": [ { "isoform_ac": "A0A287AAD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAD4/entry#A0A287AAD4-1", "sequence": { "sequence": "MAVLKLTDQPPLVQAIFSGDPEEIRMLIHKTEDVNALDSEKRTPLHVAAFLGDAEIIELLILSGARVNAKDNMWLTPLHRAVASRSEEAVQVLIKHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLINHGAEVTCKDKKGYTPLHAAASNGQITVVKHLLNLGVEIDEINVYGNTALHLACYNGQDAVVNELTDYGANVNQPNNSGFTPLHFAAASTHGALCLELLVNNGADVNIQSKDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNTPLHVAARYGHELLINTLITSGADTAKCGIHSMFPLHLAALNAHSDCCRKLLSSGFEIDTPDKFGRTCLHAAAAGGNVECIKLLQSSGADFHKKDKCGRTPLHYAAANCHFHCIETLVTTGASVNETDDWGRTALHYAAASDMDRNKSLLGNAHENSEELERARELKEKEAALCLEFLLQNDANPSIRDKEGYNSIHYAAAYGHRQCLELLLERTNSVFEESDSGATKSPLHLAAYNGHHQALEVLLQSLVDLDIRDEKGRTALDLAAFKGHTECVEALINQGASIFVKDNVTKRTPLHASVINGHTLCLRLLLEIADNPEVVDVKDAKGQTPLMLAVAYGHIDAVSLLLEKEANVDAVDIMGCTALHRGIMTGHEECVQMLLEQEVSILCKDSRGRTPLHYAAARGHATWLSELLQMALSEEDCSFKDNQGYTPLHWACYNGNENCIEVLLEQKCFRKFIGNPFTPLHCAIINDHENCASLLLGAIDSNIVNCRDDKGRTPLHAAAFADHVECLQLLLRHNAQVNAADNSGKTALMMAAENGQAGAVDILVNSAQADLTVKDKDLNTPLHLASSKGHEKCALLILDKIQDESLINAKNNALQTPLHVAARNGLKVVVEELLAKGACVLAVDENGHTPALACAPNKEVADCLALILATMMTFSPSSTMTAVNFVCFKKDSLSRTTLSNLGSMVSLCSNNVGSEDGYNENDSDSETF", "length": 1056, "header": "tr|A0A287AAD4-1|A0A287AAD4_PIG Isoform 1 of Ankyrin repeat domain 44 OS=Sus scrofa OX=9823 GN=ANKRD44 PE=4 SV=2 CANONICAL=A0A287AAD4-1" }, "locus": { "chromosome": "15", "start_pos": 101210944, "end_pos": 100872513, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051756.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051756.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040967.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040967.2" } ] } }, { "isoform_ac": "A0A287B2X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAD4/entry#A0A287B2X1-1", "sequence": { "sequence": "MAVLKLTDQPPLVQAIFSGDPEEIRMLIHKTEDVNALDSEKRTPLHVAAFLGDAEIIELLILSGARVNAKDNMWLTPLHRAVASRSEEAVQVLIKHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLINHGAEVTCKDKKGYTPLHAAASNGQITVVKHLLNLGVEIDEINVYGNTALHLACYNGQDAVVNELTDYGANVNQPNNSGFTPLHFAAASTHGALCLELLVNNGADVNIQSKDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNTPLHVAARYGHELLINTLITSGADTAKCGIHSMFPLHLAALNAHSDCCRKLLSSGFEIDTPDKFGRTCLHAAAAGGNVECIKLLQSSGADFHKKDKCGRTPLHYAAANCHFHCIETLVTTGASVNETDDWGRTALHYAAASDMDRNKSLLGNAHENSEELERARELKEKEAALCLEFLLQNDANPSIRDKEGYNSIHYAAAYGHRQCLELVSCLVLFSLTHIYTQAPNHRGLHCGCPKF", "length": 579, "header": "tr|A0A287B2X1-1|A0A287B2X1_PIG Computationally mapped isoform of Ankyrin repeat domain 44 OS=Sus scrofa OX=9823 GN=ANKRD44 PE=4 SV=2 CANONICAL=A0A287AAD4-1" }, "locus": { "chromosome": "15", "start_pos": 101210944, "end_pos": 100958562, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046158.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046158.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050448.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050448.2" } ] } }, { "isoform_ac": "A0A287B787-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAD4/entry#A0A287B787-1", "sequence": { "sequence": "MPRTTSSRSEEAVQVLIKHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLINHGAEVTCKDKKGYTPLHAAASNGQITVVKHLLNLGVEIDEINVYGNTALHLACYNGQDAVVNELTDYGANVNQPNNSGFTPLHFAAASTHGALCLELLVNNGADVNIQSKDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNTPLHVAARYGHELLINTLITSGADTAKCGIHSMFPLHLAALNAHSDCCRKLLSSGFEIDTPDKFGRTCLHAAAAGGNVECIKLLQSSGADFHKKDKCGRTPLHYAAANCHFHCIETLVTTGASVNETDDWGRTALHYAAASDMDRNKSLLGNAHENSEELERARELKEKEAALCLEFLLQNDANPSIRDKEGYNSIHYAAAYGHRQCLELLLERTNSVFEESDSGATKSPLHLAAYNGHHQALEVLLQSLVDLDIRDEKGRTALDLAAFKGHTECVEALINQGASIFVKDNVTKRTPLHASVINGHTLCLRLLLEIADNPEVVDVKDAKGQTPLMLAVAYGHIDAVSLLLEKEANVDAVDIMGCTALHRGIMTGHEECVQMLLEQEVSILCKDSRGRTPLHYAAARGHATWLSELLQMALSEEDCSFKDNQGYTPLHWACYNGNENCIEVLLEQKCFRKFIGNPFTPLHCAIINDHENCASLLLGAIDSNIVNCRDDKGRTPLHAAAFADHVECLQLLLRHNAQVNAADNSGKTALMMAAENGQAGAVDILVNSAQADLTVKDKDLNTPLHLASSKGHEKCALLILDKIQDESLINAKNNALQTPLHVAARNGLKVVVEELLAKGACVLAVDENASRSNGPRFAPGLAVQKEE", "length": 916, "header": "tr|A0A287B787-1|A0A287B787_PIG Computationally mapped isoform of Ankyrin repeat domain 44 OS=Sus scrofa OX=9823 GN=ANKRD44 PE=4 SV=3 CANONICAL=A0A287AAD4-1" }, "locus": { "chromosome": "15", "start_pos": 101024550, "end_pos": 100871386, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041974.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041974.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052165.3", "url": "https://www.ensembl.org/id/ENSSSCP00000052165.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAD4", "url": "https://www.uniprot.org/uniprotkb/A0A287AAD4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1049, "end_pos": 1051, "annotation": "n_glycosylation_sequon" }, { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 269, "end_pos": 271, "annotation": "n_glycosylation_sequon" }, { "start_pos": 465, "end_pos": 467, "annotation": "n_glycosylation_sequon" }, { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" }, { "start_pos": 631, "end_pos": 633, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1049, "end_pos": 1051 }, { "start_pos": 134, "end_pos": 136 }, { "start_pos": 269, "end_pos": 271 }, { "start_pos": 465, "end_pos": 467 }, { "start_pos": 486, "end_pos": 488 }, { "start_pos": 631, "end_pos": 633 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AAE5-1", "uniprot_ac": "A0A287AAE5", "uniprot_id": "A0A287AAE5_PIG", "mass": { "chemical_mass": 36159.0, "monoisotopic_mass": 36159.0 }, "refseq": {}, "gene_names": [ { "name": "CLBA1", "type": "recommended", "evidence": [ { "id": "A0A287AAE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAE5" } ] } ], "protein_names": [ { "name": "Clathrin binding box of aftiphilin containing 1", "type": "synonym", "evidence": [ { "id": "A0A287AAE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAE5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AAE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AAE5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CLBA1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAE5", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000040365", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040365", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029205", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029205", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WSESHCQ", "url": "https://omabrowser.org/oma/group/WSESHCQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR16156", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16156", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16156:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16156:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15045", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15045", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AAE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AAE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAE5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLCGPGGTNMQGQRELGGAPGQMPPLRRFPSDLTEQAGGVSLCPLSKDSDASEAPGKQSGGAADLLAQAASSPRVSGHHEGLSTCTLSGPEPGEHPGAWGEFEGFQESSARSEQFSQSFELPERPTEPQLPRTASAQRERGSPQPRQGGPAWTEATAIAPAEPILSYENIFRSAFQEVPAQQATEDVSALDHFLETSDEEKPGLEPLHKLCSESRKVWGALQSAACTSTSRCLWGASHCRESLLLVLGVDAAQGHAQGQPDLAEPAEPGAHGFCLRRCRALIQTKLAGTLGGRQGGLVTYSLFLKTPFWGAGQHMRIPRKKILTPRNLEMTLCKSDVC", "length": 339, "header": "tr|A0A287AAE5-1|A0A287AAE5_PIG Isoform 1 of Clathrin binding box of aftiphilin containing 1 OS=Sus scrofa OX=9823 GN=CLBA1 PE=4 SV=1 CANONICAL=A0A287AAE5-1" }, "isoforms": [ { "isoform_ac": "A0A287AAE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAE5/entry#A0A287AAE5-1", "sequence": { "sequence": "MRLCGPGGTNMQGQRELGGAPGQMPPLRRFPSDLTEQAGGVSLCPLSKDSDASEAPGKQSGGAADLLAQAASSPRVSGHHEGLSTCTLSGPEPGEHPGAWGEFEGFQESSARSEQFSQSFELPERPTEPQLPRTASAQRERGSPQPRQGGPAWTEATAIAPAEPILSYENIFRSAFQEVPAQQATEDVSALDHFLETSDEEKPGLEPLHKLCSESRKVWGALQSAACTSTSRCLWGASHCRESLLLVLGVDAAQGHAQGQPDLAEPAEPGAHGFCLRRCRALIQTKLAGTLGGRQGGLVTYSLFLKTPFWGAGQHMRIPRKKILTPRNLEMTLCKSDVC", "length": 339, "header": "tr|A0A287AAE5-1|A0A287AAE5_PIG Isoform 1 of Clathrin binding box of aftiphilin containing 1 OS=Sus scrofa OX=9823 GN=CLBA1 PE=4 SV=1 CANONICAL=A0A287AAE5-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 3185595, "end_pos": 3180894, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053074.2", "url": "https://www.ensembl.org/id/ENSSSCT00000053074.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040982.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040982.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AAE5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A140T882-1", "protein_name": "Clathrin binding box of aftiphilin containing 1", "gene_name": "CLBA1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSPERLPIASVRARGTNMQDQRELGGAAGQGLPLCAFLSDLPEQGGGVSLRQVSKDSGAPGRQSGDAVEWARLRCALPPPDGEARTSGGSCEGLSTSTARGPDPGEHSGAWGEFEVFQESSASSEQFCQSFELQERPAASQPWRTASAQKQHGSSQPHQGGVTGTGAIAASELVVSCEDVFRSAFQEVPVPQATEGISTLDHFLEARNEESSGLESAQKLCSESRKLWRALHNTGTMTISRCTWSESRSRENFLPVLGVDAAQKSLSGSPGRTLGEPGLHEPEELGFHLQRCRALIQTKLSGTPTGGQGSLITYSLFLKTPIHGNGQYITTPRKKKTFGPRNLKLTLFNSDIY", "length": 353 }, "evidence": [ { "id": "A0A287AAE5", "url": "https://omabrowser.org/oma/group/A0A287AAE5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5RJN9-1", "protein_name": "Uncharacterized protein CLBA1", "gene_name": "Clba1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQGGREVGRESVSDLAEELGEGSLHPTAGGQSGDSLERRRIGYDGPVILPDANANSSRLDEGLSSSRPHPGELGGGWGEFEGFQESSAKSEEFSQSFELLGRAAECQPLRTPSTPKEGGSCQVQQGGPWVTGTAAGPSSESILSYEKVFRLAFQEVPVEQATEDVCSLDRFLETGSEETAPVPRLCSESRKLWRALQNTDTVSASRCLWSESHCRENLFPVLGIDAAQKSLSGDQGHDLEGSDCRKPEDLLGVSGFHLHHCKALIQTKLSGTSGSRQGSLITYSLFLKTPLQGNGRYITIPQKKIFTPRNLKMAFFNNNVC", "length": 321 }, "evidence": [ { "id": "A0A287AAE5", "url": "https://omabrowser.org/oma/group/A0A287AAE5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BHN9-1", "protein_name": "Uncharacterized protein CLBA1", "gene_name": "Clba1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQGGQEVGRESVSDLAEEPGEGSPHQTARGQSGDGLERRRICCDGPVVLPDTNANSSRLDEGLPTSCPHPGELSGGWGEFEGFRESSAKSEQFSQSFELLGRATECQPLRTPSVPEEGSSCQVQQGGPWVTGTAAGPSSESIPSYEKVFRLAFQEVAVEQAPEDVCSLDHFLERSNEGAASVPRLCSESRKLWRALQNTDTASASRCLWGESHCRENLLPVLGVDAAQKSPPGGQGHVLEGSDLRKPEELLAVSGFHLHHCKALIQTKLSGTSSSRQGSLITYSLFLKTPLQGNGRYITIPQKKIFTPRNLKMAFFNNDVC", "length": 321 }, "evidence": [ { "id": "A0A287AAE5", "url": "https://omabrowser.org/oma/group/A0A287AAE5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96F83-1", "protein_name": "Uncharacterized protein CLBA1", "gene_name": "CLBA1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQGRRELGGEPLSDLQEEAASASLRVAPERLSDDSLEWRRTCPDLLLSDGKASISMPREGGSTCTARCPDPGEHSSTWGEFEGFRESSAKSGQFSQSLELLEGPTEPQPPRTTSAPKECSSHQPCQGGPWVTGTSAVPPSEPILSYENILKCAFQEITVQQAAEDVSTIDHFLEISSEEKPGVERVHKLCNESRKLWRALQSIHTTSTSQRLWSESRCQENFFLVLGIDAAQKNLSGGQGHIMEDCDLKEPEGLLTVSSFCLQHCKALIQTKLSGPPGSKQGRLMTCSRFLKTPSCGGGQHITIPRKRMFTPRKLKLTLFNSDVC", "length": 325 }, "evidence": [ { "id": "A0A287AAE5", "url": "https://omabrowser.org/oma/group/A0A287AAE5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "trans-Golgi network membrane", "id": "GO:0032588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032588", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AAE5" } ], "pmid": "" }, { "name": "AP-1 adaptor complex", "id": "GO:0030121", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030121", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AAE5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "clathrin binding", "id": "GO:0030276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030276", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AAE5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AAE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAE5" }, { "id": "PF15045", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15045" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aftiphilin clathrin-binding box", "eco_id": "ECO_0000259", "start_pos": 215, "end_pos": 286, "start_aa": "Ser", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, 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"https://www.uniprot.org/uniprotkb/A0A287AAG0" } ] }, { "name": "UAP1L1", "type": "synonym", "evidence": [ { "id": "XP_020936714", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936714" } ] } ], "protein_names": [ { "name": "UDP-N-acetylhexosamine pyrophosphorylase-like protein 1", "type": "recommended", "evidence": [ { "id": "A0A287AAG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG0/entry#names_and_taxonomy" } ] }, { "name": "UDP-N-acetylhexosamine pyrophosphorylase-like protein 1", "type": "synonym", "evidence": [ { "id": "XP_020936714", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936714" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AAG0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UAP1L1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG0", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000040003", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040003", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04193", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04193", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110258063", "url": "https://www.ncbi.nlm.nih.gov/gene/110258063", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002618", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002618", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039741", "url": 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"length": 504, "header": "tr|A0A287AAG0-1|A0A287AAG0_PIG Isoform 1 of UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 OS=Sus scrofa OX=9823 GN=UAP1L1 PE=3 SV=1 CANONICAL=A0A287AAG0-1" }, "isoforms": [ { "isoform_ac": "A0A287AAG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG0/entry#A0A287AAG0-1", "sequence": { "sequence": "MTSERDVRARLQRAGQEHLLRFCAELAPGPRAALLAQLEPLEPEALREHCRRAADACARPPGPPPDLAARLRPLPPERVGSAIGGDPETLRLWEEEGFHQIALNKVAVLLLAGGQGTRLGVAYPKGMYQVGLPSRKTLYQLQAERIRRVEQLAGEHYGTRCTVPWYIMTSEFTLGPTAKFFKEHDFFHLDPDNVVMFEQRMLPAVTFDGKAILEQKDKVAMAPDGNGGLYCALADNQILEDMERRGVEFVHVYCVDNILVRLADPVFIGFCVLRGADCGAKVVEKAYPEEPVGVVCQVDGVPQVVEYSEISPETARRRAPGGGLLYNAGNICNHFFTRDFLQRVTRELEPLLKPHVAVKKVPYVDEEGTPVKPLEPNGIKMEKFVFDVLPFAKNFVAFQVLREDEFSPLKNADSADRDNPSTARRALLTQHYRWALQAGAHFLDAHGARLPEKPSLPSSGEPPAICEISPLVSYSGEGLEVYLQGREFGSPLILDENQARALKP", "length": 504, "header": "tr|A0A287AAG0-1|A0A287AAG0_PIG Isoform 1 of UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 OS=Sus scrofa OX=9823 GN=UAP1L1 PE=3 SV=1 CANONICAL=A0A287AAG0-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 808793, "end_pos": 804132, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052490.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052490.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040882.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040882.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAG0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110258063", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110258063", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HDH6-1", "protein_name": "UDP-N-acetylhexosamine pyrophosphorylase-like protein 1", "gene_name": "Uap1l1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASEQDVRAQLQRAGQEHLLRFWADLAPEPLAALLAELATLEPDALREHCQRAAAACALTPGPLADLAARLQPLPPECVGSAIRCDQETRLRWEEEGFRQIALNKVAVLLLAGGQGTRLGVTYPKGMYQVGLPSQKTLYQLQAERIRRVQQLAGQRLGTHCTVPWYIMTSEFTLGPTIKFFKEHDFFHLDPANVVLFEQRMLPAVTFEGKAILERKDKVAMAPDGNGGLYCALADHQILEDMKRRGVEFVHVYCVDNILVRLADPVFIGFCVLRGADCGAKVVEKAYPEEPVGVVCQVDGVPQVVEYSEISPETAGLRGPDGGLLYNTGNICNHFFTRDFLDKVTREFEPLLKLHVAVKKVPYVDEEGNLVKPLKPNGIKMEKFVFDVFQFAKNFVAFEVSREEEFSPLKNADTASRDNPSTSRRALLAQHYRWALQAGAHFLDVHGVQLPQQSGLLPNGDPPAICEISPLVSYSGEGLEMYLQGRKLQSPFILDEDQARLLQPQEC", "length": 507 }, "evidence": [ { "id": "A0A287AAG0", "url": "https://omabrowser.org/oma/group/A0A287AAG0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V1AFW1-1", "protein_name": "UDP-N-acetylglucosamine pyrophosphorylase 1 like 1", "gene_name": "UAP1L1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPPEEVRARLERAGQGHLLRFWAELDPAQRAELLAALPPGLGEHCRLAAACARPRERLERLDGRVEPLPAAVLGSVRHCGPAALQRWEDEGLHQISQNKVAVLLLAGGQGTRLGVSYPKGMYNVGLPSGKTLYQIQAERIRKVEQLAGQRHHCKCTIPWYIMTSEFTLGPTEEFFVKHSYFNLDKANVIMFEQRMLPAVTFDGKAILEEKGKIAMAPDGNGGLYRALVDNKILDDMKQRGIQYVHVYCVDNILVKMADPVFIGFCVAKGADCGAKVVEKAYPTEPIGVVCRVDGVSHVVVEYSEISPETAQQRRPDGGLMYSVGNICNHFFTVEFLQTVAQKHESQLKHHVAIKKVPYIDEEGNLVKPLKPNGIKLEKFVFDVFQFSKNFVAFEVLREEEFSPLKNADTAETDNPTTARQSLLAQHYRWALKAGARFLDEDGCRIPEKLSLSGTEDPPAVCEISPLVSYFGEGLEAYMKNKDFCSPFILDEDKAEMLRSC", "length": 501 }, "evidence": [ { "id": "A0A287AAG0", "url": "https://omabrowser.org/oma/group/A0A287AAG0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O64765-1", "protein_name": "UDP-N-acetylglucosamine diphosphorylase 2", "gene_name": "GLCNAC1PUT2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKEPTTEIEIETSAVATILPPPLPPTASPHQALVERLKDYGQEDVFSLWDELSPEERDLLLRDIENLDLPRIDRIIRCSLHSQGLPVAAIEPVPENCVSTVEERTKEDREKWWKMGLKAIYEGKLGVVLLSGGQGTRLGSSDPKGCYNIGLPSGKSLFQIQAERILCVQRLASQAMSEASPTRPVTIQWYIMTSPFTHEPTQKFFKSHKYFGLEPDQVTFFQQGTLPCISKDGKFIMETPFSLSKAPDGNGGVYTALKSSRLLEDMASRGIKYVDCYGVDNVLVRVADPTFLGYFIDKSAASAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYTELDQSMASATNQQTGRLQYCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSINGDIVGLKLEQFIFDCFPYAPSTALFEVLREEEFAPVKNANGSNYDTPESARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEISL", "length": 502 }, "evidence": [ { "id": "A0A287AAG0", "url": "https://omabrowser.org/oma/group/A0A287AAG0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3KQV9-1", "protein_name": "UDP-N-acetylhexosamine pyrophosphorylase-like protein 1", "gene_name": "UAP1L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASEQDVRARLQRAGQEHLLRFWAELAPEPRAALLAELALLEPEALREHCRRAAEACARPHGPPPDLAARLRPLPPERVGRASRSDPETRRRWEEEGFRQISLNKVAVLLLAGGQGTRLGVTYPKGMYRVGLPSRKTLYQLQAERIRRVEQLAGERHGTRCTVPWYVMTSEFTLGPTAEFFREHNFFHLDPANVVMFEQRLLPAVTFDGKVILERKDKVAMAPDGNGGLYCALEDHKILEDMERRGVEFVHVYCVDNILVRLADPVFIGFCVLQGADCGAKVVEKAYPEEPVGVVCQVDGVPQVVEYSEISPETAQLRASDGSLLYNAGNICNHFFTRGFLKAVTREFEPLLKPHVAVKKVPYVDEEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPADRDSPRTARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLEVYLQGREFQSPLILDEDQAREPQLQES", "length": 507 }, "evidence": [ { "id": "A0A287AAG0", "url": "https://omabrowser.org/oma/group/A0A287AAG0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3TW96-1", "protein_name": "UDP-N-acetylhexosamine pyrophosphorylase-like protein 1", "gene_name": "Uap1l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSERDVRAQLQRAGQDHLLRFYADLAPEARAALLAELASLEADALREHCQRAAAAGALAPGPLPDLAARLQPLPPERVGSAIRCDQETRLRWEEEGFRQISLNKVAVLLLAGGQGTRLGVTYPKGMYQVGLPSQKTLYQLQAERIRRVQQLADQRQGTHCTVPWYIMTSEFTLGPTIKFFKEHDFFHLDPTNVVLFEQRMLPAVTFEGKAILERKDKVAMAPDGNGGLYCALADHQILEDMKQRGVEFVHVYCVDNILVRLADPVFIGFCVLQGADCGAKVVEKAYPEEPVGVVCQVDGVPQVVEYSEISPEIAGQLGADGGLLYNAGNICNHFFTRGFLDVVTREFEPLLRLHVAMKKVPYVDEEGNLVKPLRPNGIKMEKFVFDVFQFAKNFVAFEVCREEEFSPLKNDDTADRDNPSTCRRALLAQHYRWALQAGARFLDVHGVQLTEQSGMLPNGDPPAICEISPLVSYSGEGLEMYLQGRQLQSPFILDEDQARLLRPQDC", "length": 507 }, "evidence": [ { "id": "A0A287AAG0", "url": "https://omabrowser.org/oma/group/A0A287AAG0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "UDP-N-acetylglucosamine biosynthetic process", "id": "GO:0006048", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006048", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAG0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "UDP-N-acetylglucosamine diphosphorylase activity", "id": "GO:0003977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003977", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAG0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AAG7-1", "uniprot_ac": "A0A287AAG7", "uniprot_id": "A0A287AAG7_PIG", "mass": { "chemical_mass": 99440.0, "monoisotopic_mass": 99440.0 }, "refseq": {}, "gene_names": [ { "name": "PDPR", "type": "recommended", "evidence": [ { "id": "A0A287AAG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG7" } ] } ], "protein_names": [ { "name": "Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial", "type": "recommended", "evidence": [ { "id": "A0A287AAG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Decreases the sensitivity of PDP1 to magnesium ions, and this inhibition is reversed by the polyamine spermine.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAG7", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG7#function" }, { "database": "UniProtKB", "id": "ARBA00053434", "url": "https://www.uniprot.org/uniprotkb/ARBA00053434#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AAG7", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PDPR", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG7", "locus": { "chromosome": "6", "start_pos": 13227033, "end_pos": 13187427, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002724", "url": "https://www.ensembl.org/id/ENSSSCG00000002724" } ] } } ], "crossref": [ { "id": "A0A287AAG7", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AAG7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002724", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002724", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006076", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006076", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006222", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006222", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013977", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013977", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027266", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027266", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032503", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032503", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43757", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43757", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43757:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43757:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01266", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01266", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01571", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01571", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08669", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08669", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16350", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16350", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-204174", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204174", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AAG7", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VMFYRLLSVVRRRGSSRGWQKWSSARSSASAAEVHSVALPAEAQVVICGGGIMGTSVAYHLSKMGWKDVVLLEQGRLAAGSTRFCAGILSTARHLSIEQKMADYSNKLYHQLEQETGIQTGYIRTGSIFLAQTQDRLISLKRINSRLNVIGIPSEIVSPKRVAELHPLLNVHDLVGAMHVPEDAVVSSADVALALASAASQNGVQIYDRTSILHVMVKKGQVTGVETDKGQIQCQYFVNCAGQWAYELGLSNEEPVSIPVHACEHFYLLTRPWETPLQSNTPTVVDADGRIYIRNWQGGILSGGFEKNPKPIFTEGKNQLEIQNLQEDWDHFEPLLSSLLRRMPELERLEILKLVNCPETFTPDMRCILGESPSVRGYFVLAGMNSAGLSFGGGAGRYLAEWMVHGYPSESVWELDLKRFGALQSSRTFLRHRVMEVMPLLYDLKVPRWDFQTGRQLRTSPLYDRLDAQGARWMEKHGFERPKYFVPPDKDLLALEQSKTFYKPDWFEIVESEVKCCKEAVCVIDMSSFTKFEITSTGDQALEILQYLFSNDLDVPVGHIVHTGMLNESGGYENDCSIARLSKRSFFMISPTDQQVHCWAWLKKYMPEDSNLILEDVTWKYTALNLIGPRAVDVLSELSYAPMTPDHFPSLFCKEMSVGYANGIRVMSMTHTGEPGFMLYIPIEYALHVYNEVMSVGQKYGIRNAGYYALRSLRIEKFFAFWGQDLNTLTTPLECGRESRVKLDKGVDFIGRAALLEQKQNGVYKRLTMFILDDHDTDLDLWPWWGEPIYRNGQYVGKTTSSAYGYTLERHVCLGFVHNFSEDTGEAQVVTADFINRGEYEIDIAGHRFQAKAKLYPVPSLFTHKRRKDDMELSDLHGK", "length": 879, "header": "tr|A0A287AAG7-1|A0A287AAG7_PIG Isoform 1 of Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Sus scrofa OX=9823 GN=PDPR PE=1 SV=1 CANONICAL=A0A287AAG7-1" }, "isoforms": [ { "isoform_ac": "A0A287AAG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAG7/entry#A0A287AAG7-1", "sequence": { "sequence": 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"AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AAK1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AAK1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AAK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK1" }, { "id": "PS50250", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50250" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PCI", "eco_id": "ECO_0000259", "start_pos": 332, "end_pos": 494, "start_aa": "Cys", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 277, "end_pos": 279 }, { 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AAK4-1", "uniprot_ac": "A0A287AAK4", "uniprot_id": "A0A287AAK4_PIG", "mass": { "chemical_mass": 129472.0, "monoisotopic_mass": 129472.0 }, "refseq": { "ac": "XP_020925141", "name": "serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925141" }, "gene_names": [ { "name": "PPP2R3A", "type": "recommended", "evidence": [ { "id": "A0A287AAK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK4" } ] }, { "name": "PPP2R3A", "type": "synonym", "evidence": [ { "id": "XP_020925141", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925141" } ] } ], "protein_names": [ { "name": "Protein phosphatase 2 regulatory subunit B''alpha", "type": "synonym", "evidence": [ { "id": 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"url": "https://www.uniprot.org/uniprotkb/A0A287AAK4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AAK4", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPP2R3A", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK4", "locus": { "chromosome": "13", "start_pos": 77147072, "end_pos": 76945395, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033185", "url": "https://www.ensembl.org/id/ENSSSCG00000033185" } ] } } ], "crossref": [ { "id": "A0A287AAK4", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AAK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033185", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033185", "database": "Bgee", 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"categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17958", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17958", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21161", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21161", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020925141", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925141", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AAK4", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AV38", "url": "https://www.uniprot.org/uniprotkb/A0A287AV38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AV38-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV38-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TRS4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TRS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRS4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1151, "header": "tr|A0A287AAK4-1|A0A287AAK4_PIG Isoform 1 of Protein phosphatase 2 regulatory subunit B''alpha OS=Sus scrofa OX=9823 GN=PPP2R3A PE=4 SV=2 CANONICAL=A0A287AAK4-1" }, "isoforms": [ { "isoform_ac": "A0A287AAK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK4/entry#A0A287AAK4-1", "sequence": { "sequence": 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"length": 1151, "header": "tr|A0A287AAK4-1|A0A287AAK4_PIG Isoform 1 of Protein phosphatase 2 regulatory subunit B''alpha OS=Sus scrofa OX=9823 GN=PPP2R3A PE=4 SV=2 CANONICAL=A0A287AAK4-1" }, "locus": { "chromosome": "13", "start_pos": 77144468, "end_pos": 76993051, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045079.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045079.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040837.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040837.2" } ] } }, { "isoform_ac": "A0A287AV38-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK4/entry#A0A287AV38-1", "sequence": { "sequence": "MAATYRLVVSTVNHYSSVVIDRRFEQAIHYCTGTCHTFAHGVDCIVVHHSVCADLLHIPVSQFKDADLDSMFLPHENGFSSAEGDYPHQALTGIPRVKKGSAFQNTCNLKDIAGEAISFASGKIKEFSLEKLKNSNHAAYKKGRKVKSDSFNRRSVDLDLLCGHYNNDGNSPSFGLLRSSSVEEKSLSHRNSLDMNLTSMLLHNFSEEDLVTQILEKHKIDNFSSGTDIKICLDILLKCSEDLKKCTDIIKQCIKKKSGSSIKEGNGNDAISSSESVYMNVMTRLASYLKKLPFEFMQSGTNEAIDLTELISNMPSLQLTPFSPVFGTEQPPKYEDVVQLSAPDSGQFQTIELQDDKHSSRKTDTVKSIPNNSTNSLYNLGISDPRTLKDVQLQSQPSPMSPLENVSSGDLMETLYIEEETDGKKALDKGQRTENGPSQDLLKVNEDRAEFSDCGTHLKKCPASMQNEIGKIFEKPVVSLPGEGLKSEVSKVEEGNHRDFMNPNSQEEIDKLLMDLESFSQKMETSLREPFAKDKSSNSLNSHSPLTGQLPLDLDPKSKVSSPTEKAPPSCLTRIIETNGHKIEEEDRALLLRILESIEDFAQELVECKSGRGSLSQEKEMMQILQETLTTSPQSNLSVCRSPVGDKAKDATSVVLIQQTPEVIKVCGCPLYWKAPMFRAAGGERTGFVSAQSFIAMWRKLLSNHHDDASKFICLLARPGCSSLEQDDFIPLLQDVVDTHPGLTFLKDAPEFHSRYITTVIQRIFYTVNRSWSGKITSTEIRKSNFLQTLALLEEEEDINQITDYFSYEHFYVIYCKFWELDSDHDLYISQADLSRYNDQASSNRIIERIFSGAVTRGKSVQKEGRMSYADFVWFLISEEDKRNPTSIEYWFRCMDVDGDGVLSMYELEYFYEEQCERMEAMGIEPLPFHDLLCQMLDLVKPASDGKITLRDLKRCRMAHIFYDTFFNLEKYLDHEQRDPFAVQKDVENDGPEPSDWDRFAAEEYETLVAEESAQAQFQEGSFEDYETEDPASPSETGNKGNKIVTSSLSEKCGKLQSVDEE", "length": 1062, "header": "tr|A0A287AV38-1|A0A287AV38_PIG Computationally mapped isoform of Protein phosphatase 2 regulatory subunit B''alpha OS=Sus scrofa OX=9823 GN=PPP2R3A PE=4 SV=1 CANONICAL=A0A287AAK4-1" }, "locus": { "chromosome": "13", "start_pos": 77144468, "end_pos": 76993051, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064406.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064406.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047972.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047972.2" } ] } }, { "isoform_ac": "A0A4X1TRS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAK4/entry#A0A4X1TRS4-1", "sequence": { "sequence": "MMIKETSLRRDPDLRGELAFLARGCDFVLPSRFKKRLKSFQQAQIQNKPEKKPGTPLPPPATFPSSPRPLSPVPHVNNVVNAALSINIPRFYFPEGLPDACSNHEQTLSRIESAFMEIEDQKADIFEMGKIAKVCGCPLYWKAPMFRAAGGERTGFVSAQSFIAMWRKLLSNHHDDASKFICLLARPGCSSLEQDDFIPLLQDVVDTHPGLTFLKDAPEFHSRYITTVIQRIFYTVNRSWSGKITSTEIRKSNFLQTLALLEEEEDINQITDYFSYEHFYVIYCKFWELDSDHDLYISQADLSRYNDQASSNRIIERIFSGAVTRGKSVQKEGRMSYADFVWFLISEEDKRNPTSIEYWFRCMDVDGDGVLSMYELEYFYEEQCERMEAMGIEPLPFHDLLCQMLDLVKPASDGKITLRDLKRCRMAHIFYDTFFNLEKYLDHEQRDPFAVQKDVENDGPEPSDWDRFAAEEYETLVAEESAQAQFQEGSFEDYETEDPASPSETGNKGNKIVTSSLSEKCGKLQSVDEE", "length": 530, "header": "tr|A0A4X1TRS4-1|A0A4X1TRS4_PIG Computationally mapped isoform of Protein phosphatase 2 regulatory subunit B''alpha OS=Sus scrofa OX=9823 GN=PPP2R3A PE=4 SV=1 CANONICAL=A0A287AAK4-1" }, "locus": { "chromosome": "13", "start_pos": 77144468, "end_pos": 77013571, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042471.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042471.3" }, { "database": "Ensembl 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR006569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051485", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051485", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23140", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23140", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23140:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23140:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04818", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04818", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AAW2", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRN4", "url": "https://www.uniprot.org/uniprotkb/A0A287BRN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRN4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQGVSFNKKLMDRFDFGEDSEHSEEPKKEIPTSQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDGVEEESFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPPPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPTIPPVVPTSLVQPPLSMTPETVKDVGFGSLVLPGGSVASSLATSTLPAGSVFNPPTKQAEPEEKVPHLLDHQISSGENTRSGGQPPNVTSNSGILGVQRPNVSSNNEILGVRPSNVSSGSGIIGPQPPTILNNSGILGIQPPSVSSSSGLLGVLPPNIPNSSGLIGVQPPGVPNPGLLGTQPPAGPQNLPPLNLSNQRMPAMPILDIRPGLIPQTPGPRFPLIQPGIPPQRGLPPPSVLDAALHPPPRGPFPPGDIFSPPERPFLVPGRQSVDNVSNPEKRIPLGNDNIQQEGDRDYRFPPMETRETISRPPPVDVRDVVGRPVDPREGPGRPPLDGREHFGRPPVDIRENLVRPGIDHLGRRDHFGFTPEKPWGHRDFDEREHRVLPVYAGPKGLHEERGRFRSGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRDRIQNTWVPPPHARVFDFFEGATSQRKGDNVPQVNGENTERHAQPPPLPAQSDPELYEKLTSSSEISKEKSDTVADIESEPVVESTETEGT", "length": 1256, "header": "tr|A0A287AAW2-1|A0A287AAW2_PIG Isoform 1 of SR-related CTD associated factor 8 OS=Sus scrofa OX=9823 GN=SCAF8 PE=4 SV=3 CANONICAL=A0A287AAW2-1" }, "isoforms": [ { "isoform_ac": "A0A287AAW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2/entry#A0A287AAW2-1", "sequence": { "sequence": "MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQGVSFNKKLMDRFDFGEDSEHSEEPKKEIPTSQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDGVEEESFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPPPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPTIPPVVPTSLVQPPLSMTPETVKDVGFGSLVLPGGSVASSLATSTLPAGSVFNPPTKQAEPEEKVPHLLDHQISSGENTRSGGQPPNVTSNSGILGVQRPNVSSNNEILGVRPSNVSSGSGIIGPQPPTILNNSGILGIQPPSVSSSSGLLGVLPPNIPNSSGLIGVQPPGVPNPGLLGTQPPAGPQNLPPLNLSNQRMPAMPILDIRPGLIPQTPGPRFPLIQPGIPPQRGLPPPSVLDAALHPPPRGPFPPGDIFSPPERPFLVPGRQSVDNVSNPEKRIPLGNDNIQQEGDRDYRFPPMETRETISRPPPVDVRDVVGRPVDPREGPGRPPLDGREHFGRPPVDIRENLVRPGIDHLGRRDHFGFTPEKPWGHRDFDEREHRVLPVYAGPKGLHEERGRFRSGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRDRIQNTWVPPPHARVFDFFEGATSQRKGDNVPQVNGENTERHAQPPPLPAQSDPELYEKLTSSSEISKEKSDTVADIESEPVVESTETEGT", "length": 1256, "header": "tr|A0A287AAW2-1|A0A287AAW2_PIG Isoform 1 of SR-related CTD associated factor 8 OS=Sus scrofa OX=9823 GN=SCAF8 PE=4 SV=3 CANONICAL=A0A287AAW2-1" }, "locus": { "chromosome": "1", "start_pos": 12121869, "end_pos": 12041149, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048023.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048023.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041034.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041034.3" } ] } }, { "isoform_ac": "A0A287BRN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2/entry#A0A287BRN4-1", "sequence": { "sequence": "MEAVKTFNSECKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQGVSFNKKLMDRFDFGEDSEHSEEPKKEIPTSQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDGVEEESFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPPPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPTIPPVVPTSLVQPPLSMTPETVKDVGFGSLVLPGGSVASSLATSTLPAGSVFNPPTKQAEPEEKVPHLLDHQISSGENTRSVIPNDISSNSAILGGQPPNVTSNSGILGVQRPNVSSNNEILGVRPSNVSSGSGIIGPQPPTILNNSGILGIQPPSVSSSSGLLGVLPPNIPNSSGLIGVQPPGVPNPGLLGTQPPAGPQNLPPLNLSNQRMPAMPILDIRPGLIPQTPGPRFPLIQPGIPPQRGLPPPSVLDAALHPPPRGPFPPGDIFSPPERPFLVPGRQSVDNVSNPEKRIPLGNDNIQQEGDRDYRFPPMETRETISRPPPVDVRDVVGRPVDPREGPGRPPLDGREHFGRPPVDIRENLVRPGIDHLGRRDHFGFTPEKPWGHRDFDEREHRVLPVYAGPKGLHEERGRFRSGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRDRIQNTWVPPPHARVFDFFEGATSQRKGDNVPQVNGENTERHAQPPPLPAQSDPELYEKLTSSSEISKEKSDTVADIESEPVVESTETEGT", "length": 1226, "header": "tr|A0A287BRN4-1|A0A287BRN4_PIG Computationally mapped isoform of SR-related CTD associated factor 8 OS=Sus scrofa OX=9823 GN=SCAF8 PE=4 SV=2 CANONICAL=A0A287AAW2-1" }, "locus": { "chromosome": "1", "start_pos": 12121869, "end_pos": 12041149, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056077.2", "url": "https://www.ensembl.org/id/ENSSSCT00000056077.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059093.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059093.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 166, "start_aa": "Thr", "end_pos": 166, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr166", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAW2", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAW2", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2" } ], "pmid": "" }, { "name": "RNA polymerase II complex binding", "id": "GO:0000993", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000993", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAW2", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2" } ], "pmid": "" }, { "name": "RNA polymerase II C-terminal domain phosphoserine binding", "id": "GO:1990269", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990269", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAW2", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAW2", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAW2", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAW2", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2" } ], "pmid": "" }, { "name": "mRNA cleavage factor complex", "id": "GO:0005849", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005849", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAW2", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "termination of RNA polymerase II transcription", "id": "GO:0006369", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006369", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAW2", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription, elongation", "id": "GO:0032786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032786", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAW2", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2" } ], "pmid": "" }, { "name": "negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled", "id": "GO:2000805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000805", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAW2", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 792, "end_pos": 794, "annotation": "n_glycosylation_sequon" }, { "start_pos": 806, "end_pos": 808, "annotation": "n_glycosylation_sequon" }, { "start_pos": 820, "end_pos": 822, "annotation": "n_glycosylation_sequon" }, { "start_pos": 837, "end_pos": 839, "annotation": "n_glycosylation_sequon" }, { "start_pos": 865, "end_pos": 867, "annotation": "n_glycosylation_sequon" }, { "start_pos": 898, "end_pos": 900, "annotation": "n_glycosylation_sequon" }, { "start_pos": 979, "end_pos": 981, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AAW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAW2" }, { "id": "PS51391", "database": "PROSITE", "url": 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Transcript", "id": "ENSSSCT00000048174.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048174.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042695.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042695.3" } ] } }, { "isoform_ac": "A0A5G2RDE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFS3/entry#A0A5G2RDE7-1", "sequence": { "sequence": "MMAAAWMEAARVSVTFDDVAVTFTQEEWGQLDPAQRTLYQEVMLENRGLLVSLGERYRLEGGLEVFQPRSFRVFSSSLPPRIDVWPSVPEESSTREIQQSLGDRGKPKTREPSPWEPAVPEGASLREPTQGGLGDPQSGRTKNQGGPSVVQEGPFGRGIASQRGKLPGKVSPEHGRSGTADGVCSRGVQEPFPPGGAVPDRDSGGSGKDAMIQEEENIFKCNECGKVFNKKHLLAGHEKIHSGVKPYECTECGKTFIKSTHLLQHHMIHTGERPYECMECGKAFNRKSYLTQHQRIHSGEKPYRCSECGKAFTHRSNFVLHKRRHTGEKSFVCKECGQVFRHRPGFLRHHIVHSGENPYECFECGKVFKHKSYLVWHQQTHTGEKPYECSECGKAFCESAALIHHYVIHTGEKPFECLECGKAFNHRSYLKRHQRIHTGEKPFVCTECGRAFTHCSTFILHKRAHTGEKPFECKECGKAFSTRKDLIRHFSVHTGEKPHECTECGKAFNRRSGLTRHQRIHSGEKPYECMECGKSFCWSTNLIRHAIIHTGEKPYKCSECGKAFSRSSSLTQHQRVHTGRNPVSVTDVGRPFPGDQTSATLRELLLGKDFLNVNPEETLLQEKTSTTTSDRTYQRETPQVSSR", "length": 643, "header": "tr|A0A5G2RDE7-1|A0A5G2RDE7_PIG Computationally mapped isoform of Zinc finger protein 264 OS=Sus scrofa OX=9823 GN=LOC110261309 PE=3 SV=1 CANONICAL=A0A287AFS3-1" }, "locus": { "chromosome": "6", "start_pos": 61643904, "end_pos": 61630401, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": 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"A0A287AAX7", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFS3", "url": "https://www.uniprot.org/uniprotkb/A0A287AFS3" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFS3", "url": "https://www.uniprot.org/uniprotkb/A0A287AFS3" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": 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"name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AAX8-1", "uniprot_ac": "A0A287AAX8", "uniprot_id": "A0A287AAX8_PIG", "mass": { "chemical_mass": 104223.0, "monoisotopic_mass": 104223.0 }, "refseq": {}, "gene_names": [ { "name": "CC2D1A", "type": "recommended", "evidence": [ { "id": "A0A287AAX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8" } ] } ], "protein_names": [ { "name": "Coiled-coil and C2 domain-containing protein 1A", "type": "recommended", "evidence": [ { "id": "A0A287AAX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8/entry#names_and_taxonomy" } ] }, { "name": "Five prime repressor element under dual repression-binding protein 1", "type": "synonym", "evidence": [ { "id": "A0A287AAX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AAX8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CC2D1A", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8", "locus": { "chromosome": "2", "start_pos": 65235758, "end_pos": 65252506, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013761", "url": "https://www.ensembl.org/id/ENSSSCG00000013761" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013761", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013761", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08690", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08690", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HQTGRTK", "url": "https://omabrowser.org/oma/group/HQTGRTK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13076", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13076", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13076:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13076:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21528", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21528", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AAX8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QA46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QA46-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA46-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SD63", "url": "https://www.uniprot.org/uniprotkb/F1SD63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SD63-1", "url": "https://www.uniprot.org/uniprotkb/F1SD63-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHKKKGPSGPPGRGAATARQLGLLVDLSPDGLMIPEDGVNDEELEAEFLALVGGQPQALEKLKGKGPLPMEAIEKMASLCMRDPDEEEEGTDEEDVEADDDLLAELNEVLGEEQKALETHPPVAQPKATTPSPGVEATLQERLALYQKAVESARQAGDGAKMRRYDRGLKTLENLLVSVRKGNTIDEGDIPPPVAVGKGPEAMPSHTPASTQPTPVNPPAPDPRVIAEGPPSTAPASSLVSAKPQVLPGPCSPGPLAQLQSRQREYKLAALHAKQQGDTAAAARYFRVAKSFDAVLEALSRGEPVDLSRLPPPPDQLPPDPPSPPLQPPAPSMAPSVPEVPPPPRTLLEALEQRMERYRMAAAQAKTKGDQRKARMHERIVKQYQDAIRAHKAGRTVDVAELPVPPGFPPIQGLEATEPTQQSLVGVLETAMKLANQDEGAEDEEDEEPKKQLNSPAAPTAQPKAPPSRTGQSGSTPAAKAAPKATSTRAQQQLAFLEGRKKQLLQAALRAKQKNDVEGAKMHLRQAKGLEPMLEASRNGLPVDIAKVPPAPVNKDDFALVQRPGPGLSQESARRYGELTKLLRQQHEMCLNHSKQFTHLGNIAETSKFEKLAEDCKRSMETLKQAFARGLPTPAARFEQRTFSVIKIFPDLSSNDMLLFIVKGINLPTPQGLSPGDLDVFVRFDFPYPNVEEAQKDKTGVIKSTDSPEFKEQFKLCINRGHRGFRRAIQTKGIKFEVVHKGGLFKNDRVLGTAQLKLDALETACEVREILEVLDGRRPTGGRLEVMVRIREPLTAQQLETTTERWLVIDPLPAAVPTQVAGPKGKAPPIPVPTRDPGNRSARPLHSLSVLAFDQERLERKILTLRQARRPVPPDVAQQYQDIIQRSQWQRAQLEQGGPGIRREYMAQLERQLQFYTEAARRLGNDGSREAAKEALYRRNLVESELQRLRR", "length": 951, "header": "tr|A0A287AAX8-1|A0A287AAX8_PIG Isoform 1 of Coiled-coil and C2 domain-containing protein 1A OS=Sus scrofa OX=9823 GN=CC2D1A PE=1 SV=1 CANONICAL=A0A287AAX8-1" }, "isoforms": [ { "isoform_ac": "A0A287AAX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8/entry#A0A287AAX8-1", "sequence": { "sequence": "MHKKKGPSGPPGRGAATARQLGLLVDLSPDGLMIPEDGVNDEELEAEFLALVGGQPQALEKLKGKGPLPMEAIEKMASLCMRDPDEEEEGTDEEDVEADDDLLAELNEVLGEEQKALETHPPVAQPKATTPSPGVEATLQERLALYQKAVESARQAGDGAKMRRYDRGLKTLENLLVSVRKGNTIDEGDIPPPVAVGKGPEAMPSHTPASTQPTPVNPPAPDPRVIAEGPPSTAPASSLVSAKPQVLPGPCSPGPLAQLQSRQREYKLAALHAKQQGDTAAAARYFRVAKSFDAVLEALSRGEPVDLSRLPPPPDQLPPDPPSPPLQPPAPSMAPSVPEVPPPPRTLLEALEQRMERYRMAAAQAKTKGDQRKARMHERIVKQYQDAIRAHKAGRTVDVAELPVPPGFPPIQGLEATEPTQQSLVGVLETAMKLANQDEGAEDEEDEEPKKQLNSPAAPTAQPKAPPSRTGQSGSTPAAKAAPKATSTRAQQQLAFLEGRKKQLLQAALRAKQKNDVEGAKMHLRQAKGLEPMLEASRNGLPVDIAKVPPAPVNKDDFALVQRPGPGLSQESARRYGELTKLLRQQHEMCLNHSKQFTHLGNIAETSKFEKLAEDCKRSMETLKQAFARGLPTPAARFEQRTFSVIKIFPDLSSNDMLLFIVKGINLPTPQGLSPGDLDVFVRFDFPYPNVEEAQKDKTGVIKSTDSPEFKEQFKLCINRGHRGFRRAIQTKGIKFEVVHKGGLFKNDRVLGTAQLKLDALETACEVREILEVLDGRRPTGGRLEVMVRIREPLTAQQLETTTERWLVIDPLPAAVPTQVAGPKGKAPPIPVPTRDPGNRSARPLHSLSVLAFDQERLERKILTLRQARRPVPPDVAQQYQDIIQRSQWQRAQLEQGGPGIRREYMAQLERQLQFYTEAARRLGNDGSREAAKEALYRRNLVESELQRLRR", "length": 951, "header": "tr|A0A287AAX8-1|A0A287AAX8_PIG Isoform 1 of Coiled-coil and C2 domain-containing protein 1A OS=Sus scrofa OX=9823 GN=CC2D1A PE=1 SV=1 CANONICAL=A0A287AAX8-1" }, "locus": { "chromosome": "2", "start_pos": 65252239, "end_pos": 65236275, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061070.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061070.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041114.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041114.1" } ] } }, { "isoform_ac": "A0A5G2QA46-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8/entry#A0A5G2QA46-1", "sequence": { "sequence": "MHKKKGPSGPPGRGAATARQLGLLVDLSPDGLMIPEDGVNDEELEAEFLALVGGQPQALEKLKGKGPLPMEAIEKMASLCMRDPDEEEEGTDEEDVEADDDLLAELNEVLGEEQKALETHPPVAQPKATTPSPGVEATLQERLALYQKAVESARQAGDGAKMRRYDRGLKTLENLLVSVRKGNTIDEGDIPPPVAVGKGPEAMPSHTPASTQPTPVNPPAPDPRVIAEGPPSTAPASSLVSAKPQVLPGPCSPGPLAQLQSRQREYKLAALHAKQQGDTAAAARYFRVAKSFDAVLEALSRGEPVDLSRLPPPPDQLPPDPPSPPLQPPAPSMAPSVPEVPPPPRTLLEALEQRMERYRMAAAQAKTKGDQRKARMHERIVKQYQDAIRAHKAGRTVDVAELPVPPGFPPIQGLEATEPTQQSLVGVLETAMKLANQDEGAEDEEDEEPKKQLNSPAAPTAQPKAPPSRTGQSGSTPAAKAAPKATSTRAQQQLAFLEGRKKQLLQAALRAKQKNDVEGAKMHLRQAKGLEPMLEASRNGLPVDIAKVPPAPVNKDDFALVQRPGPGLSQESARRYGELTKLLRQQHEMCLNHSKQFTHLGNIAETSKFEKLAEDCKRSMETLKQAFARGLPTPAARFEQRTFSVIKIFPDLSSNDMLLFIVKGINLPTPQGLSPGDLDVFVRFDFPYPNVEEAQKDKTGVIKSTDSPEFKEQFKLCINRGHRGFRRAIQTKGIKFEVVHKGGLFKNDRVLGTAQLKLDALETACEVREILEVLDGRRPTGGRLEVMVRIREPLTAQQLETTTERWLVIDPLPAAVPTQVAGPKGKAPPIPVPTRDPGNRSARPLHSLSVLAFDQERLERKILTLRQARRPVPPDVAQQYQDIIQRSQWQRAQLEQGGPGIRREYMAQLERQLQFYTEAARRLGNDGSREAAKEALYRRNLVESEVSSLAIGGGGWAAVALSPSLTPAASPSAAAAPQVRS", "length": 981, "header": "tr|A0A5G2QA46-1|A0A5G2QA46_PIG Computationally mapped isoform of Coiled-coil and C2 domain-containing protein 1A OS=Sus scrofa OX=9823 GN=CC2D1A PE=1 SV=1 CANONICAL=A0A287AAX8-1" }, "locus": { "chromosome": "2", "start_pos": 65252239, "end_pos": 65236267, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069394.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069394.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061230.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061230.1" } ] } }, { "isoform_ac": "F1SD63-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8/entry#F1SD63-1", "sequence": { "sequence": "MELMTRNWRLSSWPWWGASPKPWRSLKAKAELNEVLGEEQKALETHPPVAQPKATTPSPGVEATLQERLALYQKAVESARQAGDGAKMRRYDRGLKTLENLLVSVRKGNTIDEGDIPPPVAVGKGPEAMPSHTPASTQPTPVNPPAPDPRVIAEGPPSTAPASSLVSAKPQVLPGPCSPGPLAQLQSRQREYKLAALHAKQQGDTAAAARYFRVAKSFDAVLEALSRGEPVDLSRLPPPPDQLPPDPPSPPLQPPAPSMAPSVPEVPPPPRTLLEALEQRMERYRMAAAQAKTKGDQRKARMHERIVKQYQDAIRAHKAGRTVDVAELPVPPGFPPIQGLEATEPTQQSLVGVLETAMKLANQDEGAEDEEDEEPKKQLNSPAAPTAQPKAPPSRTGQSGSTPAAKAAPKATSTRAQQQLAFLEGRKKQLLQAALRAKQKNDVEGAKMHLRQAKGLEPMLEASRNGLPVDIAKVPPAPVNKDDFALVQRPGPGLSQESARRYGELTKLLRQQHEMCLNHSKQFTHLGNIAETSKFEKLAEDCKRSMETLKQAFARGLPTPAARFEQRTFSVIKIFPDLSSNDMLLFIVKGINLPTPQGLSPGDLDVFVRFDFPYPNVEEAQKDKTGVIKSTDSPEFKEQFKLCINRGHRGFRRAIQTKGIKFEVVHKGGLFKNDRVLGTAQLKLDALETACEVREILEVLDGRRPTGGRLEVMVRIREPLTAQQLETTTERWLVIDPLPAAVPTQVAGPKGKAPPIPVPTRDPGNRSARPLHSLSVLAFDQERLERKILTLRQARRPVPPDVAQQYQDIIQRSQWQRAQLEQGGPGIRREYMAQLERQLQFYTEAARRLGNDGSREAAKEALYRRNLVESELQRLRR", "length": 877, "header": "tr|F1SD63-1|A0A287AAX8_PIG Computationally mapped isoform of Coiled-coil and C2 domain-containing protein 1A OS=Sus scrofa OX=9823 GN=CC2D1A PE=1 SV=3 CANONICAL=A0A287AAX8-1" }, "locus": { "chromosome": "2", "start_pos": 65250777, "end_pos": 65236275, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015035.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015035.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014630.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014630.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SD63", "url": "https://www.uniprot.org/uniprotkb/F1SD63" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3HD01-1", "protein_name": "Coiled-coil and C2 domain-containing protein 1A", "gene_name": "Cc2d1a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MHKRNGPPAPPGRGAVTARQLGLLVDFSPDGLMIPEDGVNDEELEAEFLALVGDQPQALEKLRGKGPLPMEAIEKMARLCMRDLDEDEEGTDEDDVETDEDLLAELNEVLGEEQKAVEPLMPVAQPKPSGSNPGIEAILQERLALYQSAVENARQAGDNAKMRRYDRGLKTLETLLASSRQGNIINEADIPPLITVGKAPAPGYSHTHATSHLASVNLPAPESRITLEAPSVTPQTSARPQLPPGPCTPLAQLQSLQHEYKLAALHAKHQGDTAAATRHLRVAKSFDPVLEALSRGELVDLSRLPPPPDQLSPEPPLPAAEPLNPSPAPIRPEVPQPPRSLLEALEQRMERYHVAAAQAKAKGDQRKARMHERIVKQYQDAIRAHKAGRAVDVTELPVPPGFPPIQGLESAEPTQQSLVGVLETAMKLANHDEGSEEEEDEAPKKQNTPAAPTTHLKSSPSRAPSSGPAPAGKAAPKATSTRAQQQLAFLEGRKKQLLQAALRAKQKNDVEGAKMHLRQAKGLEPMLEASRNGLPVDIAKVPPAPVNKDDFVLVQRPGPGLSQEAVRRYGELTKLLRQQHEMCLNHATQFTHLGNIAETIKFEKLAEDCKRSMDTLKQAFAHSLPTPAARFEQRTFSVIKVFPDLSNNDMLLFIVKGINLPTPTGLSPSDLDAFVRFDFPYPNVEEAQKDKTSVIKNTDSPEFKEQFKLCISRGHRGFRRAIQTKGIKFEVVHKGGLFKTDRVLGTAQLKLDMLETACEVRETLEVLDGRRPTGGRLEVMVRIREPLTAQQLETTTERWLVIDHLPAAVPTVSGPKAKVPSIAATWREPGNRSARPLHSLSVLAFDQERLERKILALRQARRPVPPEVAQQYQDVVQRSQWQRAQLEQGGAGIRREYASHLERQLNFYTEAARRLGYDGSREAAKEALYRRNLVESELQRLRR", "length": 943 }, "evidence": [ { "id": "A0A287AAX8", "url": "https://omabrowser.org/oma/group/A0A287AAX8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q66HA5-1", "protein_name": "Coiled-coil and C2 domain-containing protein 1A", "gene_name": "Cc2d1a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MHKRNGPQAPPGRGAVTARQLGLLVDFSPDGLMIPEDGVNDEELEAEFLALVGGQPQALEKLKGKGPLPMEAIEKMARLCMRDLDEDEEGTDEDVEADEDLLAELNEVLGEERKAVEPAMPVVQPKPSSPNPGIEATLQERLILYQSAVESARQAGDSAKMRRYDRGLKTLENLLVSAKKGNTINEADIPPPVASGKGPAIGHSHTHTTSHLAPVSPPAPEPSVTLEAPSTTAQTSAKPQLSPDPCSPLARLQSLQHEYKVAALRAKHQDDTATAARYLRVSKSFDPVLEALSRGELVDLSRLPPPPDQLSPEPPLPAAQPVTPASTLTRPEVPQPPKNLLEALEQRMERYHVAAAQAKAKGDQRKARMHERIVKQYQDAIRAHKAGRAVDVAELPVPPGFPPIQGLESAEPSQQSLVGVLETAMKLANHEEGSDEEEEETPKKNTPAASTAQPKASPSRAPPSGPAPAGKAASKGTSTRAQQQLAFLEGRKKQLLQAALRAKQKNDVEGAKMHLRQAKGLEPMLEASRNGLPVDIAKVPPAPVNKDDFVLVQRPGPGMSQEAVRRYGELTKLLRQQHEMCLNHSTQFTHLGNIAETIKFEKLAEDCKRSMDTLKQAFARSLPTPAARFEQRTFSVIKIFPDLSNNDMLLFIVKGINLPTPPGLSPSDLDAFVRFDFPYPNVEEAQKDKTSVIKSTDSPEFKEQFKLCINRGHRGFRRAIQTKGIKFEVVHKGGLFKTDRVLGTAQLKLDTLETACEVHEILEVLDGRRPTGGRLEVMVRIREPLTAQQLETTTERWLVIDHIPAAVPTVTGPKAKVPLIPASSKEAGNRSSRPLHSLSVLAFDQERLERKILALRQARRPVPPEVAQQYQDVVQRSQWQRAQLEQGGAALRREYASHLERQLHFYTEAARRLGYDGSREAAKEALYRRNLVESELQRLRR", "length": 941 }, "evidence": [ { "id": "A0A287AAX8", "url": "https://omabrowser.org/oma/group/A0A287AAX8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6P1N0-1", "protein_name": "Coiled-coil and C2 domain-containing protein 1A", "gene_name": "CC2D1A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MHKRKGPPGPPGRGAAAARQLGLLVDLSPDGLMIPEDGANDEELEAEFLALVGGQPPALEKLKGKGPLPMEAIEKMASLCMRDPDEDEEEGTDEDDLEADDDLLAELNEVLGEEQKASETPPPVAQPKPEAPHPGLETTLQERLALYQTAIESARQAGDSAKMRRYDRGLKTLENLLASIRKGNAIDEADIPPPVAIGKGPASTPTYSPAPTQPAPRIASAPEPRVTLEGPSATAPASSPGLAKPQMPPGPCSPGPLAQLQSRQRDYKLAALHAKQQGDTTAAARHFRVAKSFDAVLEALSRGEPVDLSCLPPPPDQLPPDPPSPPSQPPTPATAPSTTEVPPPPRTLLEALEQRMERYQVAAAQAKSKGDQRKARMHERIVKQYQDAIRAHKAGRAVDVAELPVPPGFPPIQGLEATKPTQQSLVGVLETAMKLANQDEGPEDEEDEVPKKQNSPVAPTAQPKAPPSRTPQSGSAPTAKAPPKATSTRAQQQLAFLEGRKKQLLQAALRAKQKNDVEGAKMHLRQAKGLEPMLEASRNGLPVDITKVPPAPVNKDDFALVQRPGPGLSQEAARRYGELTKLIRQQHEMCLNHSNQFTQLGNITETTKFEKLAEDCKRSMDILKQAFVRGLPTPTARFEQRTFSVIKIFPDLSSNDMLLFIVKGINLPTPPGLSPGDLDVFVRFDFPYPNVEEAQKDKTSVIKNTDSPEFKEQFKLCINRSHRGFRRAIQTKGIKFEVVHKGGLFKTDRVLGTAQLKLDALEIACEVREILEVLDGRRPTGGRLEVMVRIREPLTAQQLETTTERWLVIDPVPAAVPTQVAGPKGKAPPVPAPARESGNRSARPLHSLSVLAFDQERLERKILALRQARRPVPPEVAQQYQDIMQRSQWQRAQLEQGGVGIRREYAAQLERQLQFYTEAARRLGNDGSRDAAKEALYRRNLVESELQRLRR", "length": 951 }, "evidence": [ { "id": 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"url": "https://omabrowser.org/oma/group/A0A287AAX8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAX8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAX8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8" } ], "pmid": "" }, { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAX8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAX8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8" } ], "pmid": "" }, { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAX8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAX8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAX8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8" } ], "pmid": "" }, { "name": "negative regulation of snRNA transcription by RNA polymerase II", "id": "GO:1905381", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905381", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAX8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8" } ], "pmid": "" }, { "name": "regulation of postsynapse assembly", "id": "GO:0150052", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0150052", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAX8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAX8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX8" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AAX9-1", "uniprot_ac": "A0A287AAX9", "uniprot_id": "A0A287AAX9_PIG", "mass": { "chemical_mass": 62269.0, "monoisotopic_mass": 62269.0 }, "refseq": {}, "gene_names": [ { "name": "SL44-1", "type": "recommended", "evidence": [ { "id": "A0A287AAX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX9" } ] } ], "protein_names": [ { "name": "Basic proline-rich protein", "type": "synonym", "evidence": [ { "id": "A0A287AAX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AAX9", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SL44-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX9", "locus": {} } ], "crossref": [ { "id": "A0A287AAX9", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AAX9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040242", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040242", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "SPPMNEP", "url": "https://omabrowser.org/oma/group/SPPMNEP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AAX9", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPILLSVALLALSSARSPFFDLEDANSNSAEKFLRPPPGGGPPRPPPPEESQGEGHQKRPRPPGDGPEQGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPVPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPPPPPPADEPQQGPAPSGDKPKKKPPPPAGPPPPGPPSPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPAPGPSPPRPPPGPPPQ", "length": 676, "header": "tr|A0A287AAX9-1|A0A287AAX9_PIG Isoform 1 of Basic proline-rich protein OS=Sus scrofa OX=9823 GN=SL44-1 PE=4 SV=1 CANONICAL=A0A287AAX9-1" }, "isoforms": [ { "isoform_ac": "A0A287AAX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX9/entry#A0A287AAX9-1", "sequence": { "sequence": 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"ENSSSCT00000042680.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042680.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040964.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040964.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAX9", "url": "https://www.uniprot.org/uniprotkb/A0A287AAX9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AAX9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 676, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AAX9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AAX9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], 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"sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AAY1-1", "uniprot_ac": "A0A287AAY1", "uniprot_id": "A0A287AAY1_PIG", "mass": { "chemical_mass": 49186.0, "monoisotopic_mass": 49186.0 }, "refseq": { "ac": "XP_005660132", "name": "perilipin-2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660132" }, "gene_names": [ { "name": "PLIN2", "type": "recommended", "evidence": [ { "id": "A0A287AAY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AAY1" } ] }, { "name": "ADFP", "type": "synonym", "evidence": [ { "id": "XP_005660132", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660132" } ] }, { "name": "ADRP", "type": "synonym", "evidence": [ { "id": "XP_005660132", "database": "RefSeq", "url": 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"https://www.uniprot.org/uniprotkb/ARBA00058299#function" }, { "database": "UniProtKB", "id": "A0A5G2QS35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS35#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AAY1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAY1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLIN2", "url": "https://www.uniprot.org/uniprotkb/A0A287AAY1", "locus": { "chromosome": "1", "start_pos": 203709273, "end_pos": 203683862, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035863", "url": "https://www.ensembl.org/id/ENSSSCG00000035863" } ] } } ], "crossref": [ { "id": "ENSSSCG00000035863", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035863", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "397402", "url": "https://www.ncbi.nlm.nih.gov/gene/397402", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004279", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004279", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NQENCHE", "url": "https://omabrowser.org/oma/group/NQENCHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AAY1", "url": "https://www.orthodb.org/?gene=A0A287AAY1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14024", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14024", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14024:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14024:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005660132", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660132", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AAY1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAY1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS35-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASVAVESQPSVVTRVANLPLVSSTYDLVSSAYISTKDQYPYLKSLCEMAEKGVKTITSVAMSGALPIIQKLEPQIAIANTYACKGLDRIEEKLPILNQPTNQVVANAKGAVTGAKDAMTTTVTGAKDCVASTITEVVDKTKEAVTGSVEKTKSVVNGSINTVLGSRMMQLVSSGVEKAFTKSELLVDQYLPLTEEELEKEAKKVEGFDMVQKPSYYVRLGSLSTKLRSRAYQQALTRVKEVKQKSQETISQLHSTVNLIEFARKNVHNANQKIQGTQDKLYLSWVEWKRSIGYDDTDESHCAEHIESRTLAIARNLTQQLQTTCHTLVSNIQGLPQNIHDQANHLGVMAGDIYSVFHNASSFKEMSDGLLSSSKGQLQKMKESLDDVMDYLVNNTPLNWLVPDFSITDLTSEPDEIPDIIALEEEDGPDHSHATNHETSQGKMLNN", "length": 447, "header": "tr|A0A287AAY1-1|A0A287AAY1_PIG Isoform 1 of Perilipin OS=Sus scrofa OX=9823 GN=PLIN2 PE=1 SV=1 CANONICAL=A0A287AAY1-1" }, "isoforms": [ { "isoform_ac": "A0A287AAY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAY1/entry#A0A287AAY1-1", "sequence": { "sequence": "MASVAVESQPSVVTRVANLPLVSSTYDLVSSAYISTKDQYPYLKSLCEMAEKGVKTITSVAMSGALPIIQKLEPQIAIANTYACKGLDRIEEKLPILNQPTNQVVANAKGAVTGAKDAMTTTVTGAKDCVASTITEVVDKTKEAVTGSVEKTKSVVNGSINTVLGSRMMQLVSSGVEKAFTKSELLVDQYLPLTEEELEKEAKKVEGFDMVQKPSYYVRLGSLSTKLRSRAYQQALTRVKEVKQKSQETISQLHSTVNLIEFARKNVHNANQKIQGTQDKLYLSWVEWKRSIGYDDTDESHCAEHIESRTLAIARNLTQQLQTTCHTLVSNIQGLPQNIHDQANHLGVMAGDIYSVFHNASSFKEMSDGLLSSSKGQLQKMKESLDDVMDYLVNNTPLNWLVPDFSITDLTSEPDEIPDIIALEEEDGPDHSHATNHETSQGKMLNN", "length": 447, "header": "tr|A0A287AAY1-1|A0A287AAY1_PIG Isoform 1 of Perilipin OS=Sus scrofa OX=9823 GN=PLIN2 PE=1 SV=1 CANONICAL=A0A287AAY1-1" }, "locus": { "chromosome": "1", "start_pos": 203709017, "end_pos": 203685668, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054843.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054843.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041181.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041181.1" } ] } }, { "isoform_ac": "A0A5G2QS35-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAY1/entry#A0A5G2QS35-1", "sequence": { "sequence": "MASVAVESQPSVVTRVANLPLVSSTYDLVSSAYISTKDQYPYLKSLCEMAEKGVKTITSVAMSGALPIIQKLEPQIAIANTYACKGLDRIEEKLPILNQPTNQVVANAKGAVTGAKDAMTTTVTGAKDCVASTITEVVDKTKEAVTGSVEKTKSVVNGSINTVLGSRMMQLVSSGVEKAFTKSELLVDQYLPLTEEELEKEAKKVEGFDMVQKPSYYVRLGSLSTKLRSRAYQQALTRVKEVKQKSQETISQLHSTVNLIEFARKNVHNANQKIQGTQDKLYLSWVEWKRSIGYDDTDESHCAEHIESRTLAIARNLTQQLQTTCHTLVSNIQGLPQNIHDQANHLGVMAGDIYSVFHNASSFKEMSDGLLSSSKGQLQKMKESLDDVMDYLVNNTPLNWLVGPFYPQLTESQDAQSRGAENTTSPETQQPEKTH", "length": 435, "header": "tr|A0A5G2QS35-1|A0A287AAY1_PIG Computationally mapped isoform of Perilipin OS=Sus scrofa OX=9823 GN=PLIN2 PE=1 SV=1 CANONICAL=A0A287AAY1-1" }, "locus": { "chromosome": "1", "start_pos": 203694208, "end_pos": 203685668, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079064.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079064.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067740.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067740.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS35" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MC25-1", "protein_name": "Perilipin", "gene_name": "Plin2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASVAVDPQPSVVTRVANLPLVSSTYDLVSSAYVSTKDQYPYLRSVCEMAEKGVKTMTSVAVTSAMPIIQKLEPQIAVANTYACKGLDKIEERLPILNQPTTEIVANAKGAVTGAKDAVTTTVAGAKDSVASTITGVVDKTKGAVTGSVERTKSVVNGSINTVLGSRMVQLVSSGVENALAKSELLVDQYLPLTQEELEREAKKVEGFDMVQKPSYYVRLGSLSTKLRSRAYQQALSRVKDAKQKSQETISQLHSTVHLIEFARKNMHSANQKIQGAQDKLYVSWLEWKRSIGYDDTDESHCAEHIESRTLAIARNLTQQLQTTCQTLLSNVQGLPQNVQDQASHLGVMAGDIYSVFRNAASFKEVSDGFLTSSKGQLQKMKESLDDVMDYLVNNTPLNWLTLDFTAVDLTSETDEVPDIIPLEEED", "length": 427 }, "evidence": [ { "id": "A0A287AAY1", "url": "https://omabrowser.org/oma/group/A0A287AAY1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0YUP0-1", "protein_name": "Perilipin", "gene_name": "PLIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALAAIDPQQNIVSRVVNLPLVSSTYDMVSTAYITTKDNHPYLKSVCEIAEKGVKTITSVAMTSAMPIIQKLEPQIVVANNYACIGLDKIEERLPILNQPTDKVVANAKGVVVGAREAVTTTVSGAKETVAHKITGVVGKTKEAVQDSVEITKSVVNGGINTVLGSRVVQMMSSGMDSALTKSETLVDQYLPLTEAELEREAAKVEGFEVGVQKPSYYVRLGSLSSKFRARAYQQALNKVRDAKQKSQETISQLHNTVSLIEYARKNMNSANQKLLGAQEKLYQSWVEWKKNTGQNDGDESHSAEHIESRTLAIAQSLTQQLQTTCLTLVTSIQGLPQSVQDQVYSVRSMAGDVYEIFRSASSFQELSDSFLTTSKGQLKKMKESLDDVMDYLVNNTPLNWLVPDFTITDLSSESDDIPDVLDLDEEDQQDFSRTNGPYTTGQRAE", "length": 446 }, "evidence": [ { "id": "A0A287AAY1", "url": "https://omabrowser.org/oma/group/A0A287AAY1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TPQ7-1", "protein_name": "Perilipin", "gene_name": "PLIN2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASVAAEPQLSVVTRVANLPLVSSTYDLVSSAYISRKDQYPYLKSLCEMAEKGMKTITSVAVTSALPIIQKLEPQIAVANTYACKGLDRIEEKLPILNQPTNQVVANAKGAMTGAKDAVTTTVTGAKDSVASTITGVVDRTKGAVTGSVEKTKSVVSGSINTVLRSRVMQLMSSGVENALTKSELLVDQYLPLTKDELEKEAKKVEGFDMVQKPSYYVRLGSLSTKLRSRAYQQALCRVEEAKRKGQETISQLHSAFNLSELARKNVHNANQKIQDAQDKLYLSWLEWKRSIGYDDTDESHCAEHIESRTLAIARNLTQQLQTMCHTLLSNIQGLPQNIQDRANHLGVMAGDIYSVFRNAASFKEVSDGLLASSKGQLQKMKESLDDVMDYLVNNTPLNWLVGPFYPQVTESESAQAPGTTRRPGRWSRKHPKPVPVSNAEGSQPDDSSS", "length": 450 }, "evidence": [ { "id": "A0A287AAY1", "url": "https://omabrowser.org/oma/group/A0A287AAY1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P43883-1", "protein_name": "Perilipin-2", "gene_name": "Plin2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAVVDPQQSVVMRVANLPLVSSTYDLVSSAYVSTKDQYPYLRSVCEMAEKGVKTVTSAAMTSALPIIQKLEPQIAVANTYACKGLDRMEERLPILNQPTSEIVASARGAVTGAKDVVTTTMAGAKDSVASTVSGVVDKTKGAVTGSVERTKSVVNGSINTVLGMVQFMNSGVDNAITKSELLVDQYFPLTQEELEMEAKKVEGFDMVQKPSNYERLESLSTKLCSRAYHQALSRVKEAKQKSQETISQLHSTVHLIEFARKNMHSANQKIQGAQDKLYVSWVEWKRSIGYDDTDESHCVEHIESRTLAIARNLTQQLQTTCQTVLVNAQGLPQNIQDQAKHLGVMAGDIYSVFRNAASFKEVSDGVLTSSKGQLQKMKESLDEVMDYFVNNTPLNWLVGPFYPQSTEVNKASLKVQQSEVKAQ", "length": 425 }, "evidence": [ { "id": "A0A287AAY1", "url": "https://omabrowser.org/oma/group/A0A287AAY1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q99541-1", "protein_name": "Perilipin-2", "gene_name": "PLIN2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASVAVDPQPSVVTRVVNLPLVSSTYDLMSSAYLSTKDQYPYLKSVCEMAENGVKTITSVAMTSALPIIQKLEPQIAVANTYACKGLDRIEERLPILNQPSTQIVANAKGAVTGAKDAVTTTVTGAKDSVASTITGVMDKTKGAVTGSVEKTKSVVSGSINTVLGSRMMQLVSSGVENALTKSELLVEQYLPLTEEELEKEAKKVEGFDLVQKPSYYVRLGSLSTKLHSRAYQQALSRVKEAKQKSQQTISQLHSTVHLIEFARKNVYSANQKIQDAQDKLYLSWVEWKRSIGYDDTDESHCAEHIESRTLAIARNLTQQLQTTCHTLLSNIQGVPQNIQDQAKHMGVMAGDIYSVFRNAASFKEVSDSLLTSSKGQLQKMKESLDDVMDYLVNNTPLNWLVGPFYPQLTESQNAQDQGAEMDKSSQETQRSEHKTH", "length": 437 }, "evidence": [ { "id": "A0A287AAY1", "url": "https://omabrowser.org/oma/group/A0A287AAY1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "lipid droplet", "id": "GO:0005811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005811", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAY1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAY1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", 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"tr|A0A287ABA3-1|A0A287ABA3_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=LOC110260809 PE=3 SV=1 CANONICAL=A0A287ABA3-1" }, "isoforms": [ { "isoform_ac": "A0A287ABA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA3/entry#A0A287ABA3-1", "sequence": { "sequence": "MGGEAVFQVFNPLGSTTESGGGVWREAPDLLARSPYRLMERFLMDGFQPQQLSTYALTLYKHRATVDGKTVLVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKITYKNLGTWYTELRTFRPEIPCIVVANKIDADIKMTQKSFNFARKFSLPLYFVSAADGTNVVKLFNDAIRLAVSYKQNSRDFMDEVLQELENFDLEQKEEDALDQKEEDALDQEQRGTTKSPSPS", "length": 232, "header": "tr|A0A287ABA3-1|A0A287ABA3_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=LOC110260809 PE=3 SV=1 CANONICAL=A0A287ABA3-1" }, "locus": { "chromosome": "5", "start_pos": 19260, "end_pos": 13598, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053535.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053535.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041172.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041172.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABA3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABA3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA3" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABA3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABA3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABA3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ABA9-1", "uniprot_ac": "A0A287ABA9", "uniprot_id": "A0A287ABA9_PIG", "mass": { "chemical_mass": 99697.0, "monoisotopic_mass": 99697.0 }, "refseq": { "ac": "XP_020934586", "name": "TRPM8 channel-associated factor 2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934586" }, "gene_names": [ { "name": "LOC110257570", "type": "recommended", "evidence": [ { "id": "A0A287ABA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA9" } ] }, { "name": "LOC110257570", "type": "synonym", "evidence": [ { "id": "XP_020934586", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934586" } ] } ], "protein_names": [ { "name": "Peptidase M60 domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287ABA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA9/entry#names_and_taxonomy" } ] }, { "name": "TRPM8 channel-associated factor 2-like", "type": "synonym", "evidence": [ { "id": "XP_020934586", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934586" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ABA9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110257570", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA9", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000032422", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032422", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110257570", "url": "https://www.ncbi.nlm.nih.gov/gene/110257570", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029062", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029062", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031161", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031161", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042279", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042279", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110257570", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257570", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SCEATML", "url": "https://omabrowser.org/oma/group/SCEATML/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287ABA9", "url": "https://www.orthodb.org/?gene=A0A287ABA9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15730", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15730", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15730:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15730:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13402", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13402", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17291", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17291", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27016", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27016", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27027", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27027", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020934586", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934586", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ABA9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAMTPAAAFEALMDGVTSWDVPKGPIPSELLLIGEAAFPVMVNDRGQVLIAASSYGQGRLVVVSHEGYLLDAGLAPFLLNAVRWLCPSPGAHVGVHPSLASLSNILQGSGVEAQIRPELREPLGVYCISAYSDAMAAELVQFVKRGGGLLIGGQAWYWASQHGRDKVLSKFPGNQVTSVAGVYFTDTCGDRSRFKVSKKVPKIPLQVSCGEALGQDQQQLLEGISELDVRTGGIPSQLLVHGPLAFPLGLDASLGCFLAAARYGRGRVVLAAHEGMLCAPKLGPFLLNAVHWLARGQTGKIGVNTRLKNLCAQLSECGLECSLEPHLTGDLCVYCCAAYSDTEATQLREFVAEGGGLLIGGQAWWWTSQNPGHSPLAGFPGNVILNCFGLSILARTLDPGCFPVPTPEKRSYHFRKALSEFQATLNHRGGNLEKSWLAKLRADGAAFLQIPAEGVPAYASLHRLLRKMLRLSGLPAVSRENPVASDSCEAAVLCLATELARSGTDCSQLVQGHGTGSCSSNPHPPEHPITVEIDGSNPGGDDSWVSTGLYLQNGQSAEISLSEAATSAGLKVQIGCHTDDLTGASTLSRAPVVTHQCLMDRTKRSVSCLWGGLLYVIVPKGSKLGPVSVTVQRAVPAPCYTLGKTSLDEWRSCIQESLAPWGELATDSVILTVPTAALRALEDPEPVLRLWDEMMRAIARLAAQPFPFRRPERIVADVQISAGWMHSGYPIMCHLESVQELISESGMRSRGLWGPIHELGHNQQRHGWEFPPHTTEATCNLWSVYVHETVLGIPRAQAHPALSPLEREKRIRTHLGKGAPLRDWTVWTALETYLQLQEAFGWEPFTQLFAEYQTLSDLPKDNTGKMNLWVKKFSEKVGKNLAPFFEAWGWPVQEDVAARLACLPAWQENPVKSYTPCRKE", "length": 920, "header": "tr|A0A287ABA9-1|A0A287ABA9_PIG Isoform 1 of Peptidase M60 domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110257570 PE=3 SV=1 CANONICAL=A0A287ABA9-1" }, "isoforms": [ { "isoform_ac": "A0A287ABA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA9/entry#A0A287ABA9-1", "sequence": { "sequence": "MAMTPAAAFEALMDGVTSWDVPKGPIPSELLLIGEAAFPVMVNDRGQVLIAASSYGQGRLVVVSHEGYLLDAGLAPFLLNAVRWLCPSPGAHVGVHPSLASLSNILQGSGVEAQIRPELREPLGVYCISAYSDAMAAELVQFVKRGGGLLIGGQAWYWASQHGRDKVLSKFPGNQVTSVAGVYFTDTCGDRSRFKVSKKVPKIPLQVSCGEALGQDQQQLLEGISELDVRTGGIPSQLLVHGPLAFPLGLDASLGCFLAAARYGRGRVVLAAHEGMLCAPKLGPFLLNAVHWLARGQTGKIGVNTRLKNLCAQLSECGLECSLEPHLTGDLCVYCCAAYSDTEATQLREFVAEGGGLLIGGQAWWWTSQNPGHSPLAGFPGNVILNCFGLSILARTLDPGCFPVPTPEKRSYHFRKALSEFQATLNHRGGNLEKSWLAKLRADGAAFLQIPAEGVPAYASLHRLLRKMLRLSGLPAVSRENPVASDSCEAAVLCLATELARSGTDCSQLVQGHGTGSCSSNPHPPEHPITVEIDGSNPGGDDSWVSTGLYLQNGQSAEISLSEAATSAGLKVQIGCHTDDLTGASTLSRAPVVTHQCLMDRTKRSVSCLWGGLLYVIVPKGSKLGPVSVTVQRAVPAPCYTLGKTSLDEWRSCIQESLAPWGELATDSVILTVPTAALRALEDPEPVLRLWDEMMRAIARLAAQPFPFRRPERIVADVQISAGWMHSGYPIMCHLESVQELISESGMRSRGLWGPIHELGHNQQRHGWEFPPHTTEATCNLWSVYVHETVLGIPRAQAHPALSPLEREKRIRTHLGKGAPLRDWTVWTALETYLQLQEAFGWEPFTQLFAEYQTLSDLPKDNTGKMNLWVKKFSEKVGKNLAPFFEAWGWPVQEDVAARLACLPAWQENPVKSYTPCRKE", "length": 920, "header": "tr|A0A287ABA9-1|A0A287ABA9_PIG Isoform 1 of Peptidase M60 domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110257570 PE=3 SV=1 CANONICAL=A0A287ABA9-1" }, "locus": { "chromosome": "18", "start_pos": 6718739, "end_pos": 6702655, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056898.2", "url": "https://www.ensembl.org/id/ENSSSCT00000056898.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041177.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041177.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 406, "start_aa": "Thr", "end_pos": 406, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr406", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABA9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110257570", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257570", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6NFQ2-1", "protein_name": "TRPM8 channel-associated factor 2", "gene_name": "TCAF2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATIAAAAFEALMDGVTCWDVPRGPIPSELLLIGEAAFPVMVNDKGQVLIAASSYGRGRLVVVSHEGYLSHTGLAPFLLNAVSWLCPCPGAPVGVHPSLAPLVNILQDAGLEAQVKPEPGEPLGVYCINAYNDTLTATLIQFVKHGGGLLIGGQAWYWASQHGPDKVLSRFPGNKVTSVAGVYFTDTYGDRDRFKVSKKVPKIPLHVRYGEDVRQDQQQLLEGISELDIRTGGVPSQLLVHGALAFPLGLDASLNCFLAAAHYGRGRVVLAAHECLLCAPKMGPFLLNAVRWLARGQTGKVGVNTNLKDLCPLLSEHGLQCSLEPHLNSDLCVYCCKAYSDKEAKQLQEFVAEGGGLLIGGQAWWWASQNPGHCPLAGFPGNIILNCFGLSILPQTLKAGCFPVPTPEMRSYHFRKALSQFQAILNHENGNLEKSCLAKLRVDGAAFLQIPAEGVPAYISLHRLLRKMLRGSGLPAVSRENPVASDSYEAAVLSLATGLAHSGTDCSQLAQGLGTWTCSSSLYPSKHPITVEINGINPGNNDCWVSTGLYLLEGQNAEVSLSEAAASAGLRVQIGCHTDDLTKARKLSRAPVVTHQCWMDRTERSVSCLWGGLLYVIVPKGSQLGPVPVTIRGAVPAPYYKLGKTSLEEWKRQMQENLAPWGELATDNIILTVPTTNLQALKDPEPVLRLWDEMMQAVARLAAEPFPFRRPERIVADVQISAGWMHSGYPIMCHLESVKEIINEMDMRSRGVWGPIHELGHNQQRHGWEFPPHTTEATCNLWSVYVHETVLGIPRAQAHEALSPPERERRIKAHLGKGAPLCDWNVWTALETYLQLQEAFGWEPFTQLFAEYQTLSHLPKDNTGRMNLWVKKFSEKVKKNLVPFFEAWGWPIQKEVADSLASLPEWQENPMQVYLRARK", "length": 919 }, "evidence": [ { "id": "A0A287ABA9", "url": "https://omabrowser.org/oma/group/A0A287ABA9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F1N3Y1-1", "protein_name": "TRPM8 channel associated factor 2", "gene_name": "TCAF2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATTPAAAFEALMDGVTSWELPEGPVPSELLLTGEAAFPVMVNDKGQVLIAASFYGRGRLVVVSHEGYLLDAGLARFLLNAVRWLSPSPGAPVGVHPSLASLAHILEGSGVEAQVHPEPAEPLGVYCISAYNDTMTAELIQFVKRGGGLLIGGQAWHWASQHGSDQVLSEFPGNQVTSVAGVYFTDTYGVKGRFKVSKKVPKIPLQVRCGEDLRQDQQQLLEGISELDIGTKGLPSQLLVHGALAFPLGLDASLRCFLAAARYGRGRVVLAAHEGMLSAPSLGPFLLNAVRWLAKGQTGKVGVNTSLEKLHTLLLEHGLECSLEPHLTSGVCVYCCTAYSDKEAKQLQEFVAEGGGLLIGGHAWWWASQNPGRSALADFPGNVILNSFGLSILPWTLDPGCFPVPSADSLNYHFRKALSEFQATLNLEGGNLEKNWLAKLRVDGAAFLQIPAEGVPAYASLHRLLRKQLRLRLSGFPAVSRENPVAGDSCEAVVLCLATELARSGTDCSELAQGLGAWSCSSNLCPSEHTVEINARNPSDDAWMSTGLYLPNGQLTEVCLCEAAACAGLKLQIGCHTDNLMSASKLSRAPVVTHQCHMDRTEQLVSNLWGGLLYVIVPTGCNLGPMSITIKRAVPAPYYKLGETSLEAWRSCIQESPAPWGELATDNIILTVPTADLRALEDPEPLLRLWDEMMEAIARLAAQPFPFRRPERIVADVQISAGWMHSGYPIMCHLESVSELIDETGMRSRGLWGPVHELGHNQQREQWEFPPHTTEATCNLWSVYVHETVLGIPRAQAHPALSPPERENRIKTHLEKGAPLCDWKVWTALETYLQLQEAFGWEPFTQLFAEYQTLSDIPNDNPGKMNLWVRKFSEKVQKNLAPFFEAWGWPVEKEVASSLACLPEWEENPMRMYI", "length": 914 }, "evidence": [ { "id": "A0A287ABA9", "url": "https://omabrowser.org/oma/group/A0A287ABA9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "M0RBL7-1", "protein_name": "TRPM8 channel associated factor 2C", "gene_name": "Tcaf2c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATTPDAAFEALMNGVTSWDLPKEFTPSELLLIGEAAFPVMVNDKGQVLIAASFYGQGRLVVLSHEGYLLHAGLAPFLLNAVSWLCPSPEAPIAVHSSLASLVNILRDSGVNALVQPEPGEALGVFCIDAYNDTLTEKLVQFVKHGGGLLIGGQACNWASQQGSDKVLFSFPGNQVTSVAGVYFTDVYGGINRFKVSKKVPKIPLHIRCWEELRRDQEQLLDGISMLDIRTGGVPSQLLVHGSLAFPVGLDNSFLSCFLAAARYGCGRVVLAAHEAMLCAPKMEPFLLNAIRWLSRDQGKTIGVNKSLKNLNSLLLKHGVKCSLESHLTSDMGVYCCVAYSDQDAKKIQEFVAEGGGLLIGGQSWWWASQNQGSSALRSFPGNVVLNPFGLSILPQTISPGCFPVLPIDIRNYHFRRALSEFQAMVNHKGGNLEKKYFGKLGVDGAGFLQIPAKGVPAYISVHRILRKMLRQAGLPAVSKNNPVSSQSCEAALLCLATELAHSGTDCSQIAHNHGTQTCSSDLCSSEHPITVEINGTNTGDSDVWMSTGLYLLEGQSTEISLSEPAASAGLKVQIGCHTDNLSHARQLFRAPVVTYQCCMDRTQRSVSCLWGGLLYIIVPKGCQLGPVSVTITKAVPAPYYKLGKTSLEEWKSCMQKNLGPWGELATDSVILTVPTESLKNLEDPAPLLQLWDEIMKAVAKLAAQPFPFERPERIVTDVQISNGWMHSGYPIMCHVESVQELVSLADIRSKGLWGPIHELGHNQQRSGWEFRPHTTEATCNLWSVYVHETVLGIPRAQAHPQLKPEEREKRIKEHLQKGAPLSDWKVWTALETYLQLQEVFGWEPFMNLFAEYQCIVHIPKDNESKMNLWLKLFSEKVQKNLVPFFEAWGWPIQKPVAEALACFPSWQDHPLKMYIGME", "length": 919 }, "evidence": [ { "id": "A0A287ABA9", "url": "https://omabrowser.org/oma/group/A0A287ABA9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q921K8-1", "protein_name": "TRPM8 channel-associated factor 2", "gene_name": "Tcaf2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTPDAAFEALMNGVTSWDLPKEFTPSELLLIGEAAFPVMVNDKGQVLIAVSFYGQGRLVVVSHESYLMHAGLAPFLLNAVSWLCPSPGTPIEVHSSLASLVNILRGSGINALVQPEPGEALGVYCIDAYNDTLTKKLVQFVKRGGGLLIGGQAWNWASQHGSDKVLFSFPGNKVTSVAGVYFTDVYGDINRFKVSKKIPKIPLYIRCWEELRHDQDQLLDGISMLDVRTGGVPSQLLVHGSLAFPLGLDNSFLSCFLAAAHYGRGRVVLAAHEAMLCAPKMEPFLLNAIRWLSRGQEDNIGVNTRLKNLNSLLLKHGLKCSLESHLTDDMCVYCCAAYSDQEAKKIQEFVAEGGGLLIGGQSWWWASQNPGSSALGSFPGNVILNTFGLSILPRTVSPGCFPILHIDIRNYHFRGALSEFQAMLNHKEGNLEKRYSGKLGVDGAGFLQIPAQGVPAYLSVHRILRKILRQAGLPAVSKSNPVSSHSYEAAILQLATELAHSGSDCSQIAHNLSSQTCSSNLSSSEHPITVEINGTNPGDRDVWMSTGLYLLEGQSTEISVSEPAASAGLKVQIGCHTDDLTFAIKLFRAPVVTYQCCMNRTQRSVSCLWGGLLYIIVPKGCQLGPVSVTITNAVPAPYYKLGKTSLEEWKSCIQKNLGPWGELATDNVILTVPTASLKTLENPEPLLQLWDEMMQAVARLASQPFPFQRPERIVADVQLSAGWMHSGYPIMCHMESVQELVSLANIRSKGLWGPIHELGHNQQCRGWEFPPHTTEATCNLWSVYVHETVLGIPRAQAHPQLKPEEREKRIKEHLQKGAPLQNWNVWTALETYLQLQEVFGWEPFITLFAEYQTIFYIPEDNECKMNIWLKLFSEKVQKNLVPFFEAWGWPIQKDVAEDLACYPSWEDHPLRMYMGSE", "length": 919 }, "evidence": [ { "id": "A0A287ABA9", "url": "https://omabrowser.org/oma/group/A0A287ABA9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABA9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABA9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of protein targeting to membrane", "id": "GO:0090314", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090314", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABA9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA9" } ], "pmid": "" }, { "name": "negative regulation of anion channel activity", "id": "GO:0010360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010360", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABA9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ABA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABA9" }, { "id": "PS51723", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51723" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M60", "eco_id": "ECO_0000259", "start_pos": 542, "end_pos": 841, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 406 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "A0A287ABH0-1", "uniprot_ac": "A0A287ABH0", "uniprot_id": "A0A287ABH0_PIG", "mass": { "chemical_mass": 37494.0, "monoisotopic_mass": 37494.0 }, "refseq": { "ac": "XP_020921514", "name": "citrate lyase subunit beta-like protein, mitochondrial isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921514" }, "gene_names": [ { "name": "CLYBL", "type": "recommended", "evidence": [ { "id": "A0A287ABH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0" } ] }, { "name": "CLYBL", "type": "synonym", "evidence": [ { "id": "XP_020921514", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921514" } ] } ], "protein_names": [ { "name": "Citramalyl-CoA lyase, mitochondrial", "type": "recommended", "evidence": [ { "id": "A0A287ABH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0/entry#names_and_taxonomy" } ] }, { "name": "(3S)-malyl-CoA thioesterase", "type": "synonym", "evidence": [ { "id": "A0A287ABH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0/entry#names_and_taxonomy" } ] }, { "name": "2.3.3.9", "type": "synonym", "evidence": [ { "id": "A0A287ABH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0/entry#names_and_taxonomy" } ] }, { "name": "3.1.2.30", "type": "synonym", "evidence": [ { "id": "A0A287ABH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0/entry#names_and_taxonomy" } ] }, { "name": "4.1.3.25", "type": "synonym", "evidence": [ { "id": "A0A287ABH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0/entry#names_and_taxonomy" } ] }, { "name": "Beta-methylmalate synthase", "type": "synonym", "evidence": [ { "id": "A0A287ABH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0/entry#names_and_taxonomy" } ] }, { "name": "Malate synthase", "type": "synonym", "evidence": [ { "id": "A0A287ABH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0/entry#names_and_taxonomy" } ] }, { "name": "citrate lyase subunit beta-like protein, mitochondrial isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020921514", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921514" } ] } ], "function": [ { "annotation": "Mitochondrial enzyme required to detoxify vitamin B12-poisoning metabolites. Acts as a citramalyl-CoA lyase by converting citramalyl-CoA into acetyl-CoA and pyruvate in the C5-dicarboxylate catabolism pathway, a pathway required to detoxify itaconate, a vitamin B12-poisoning metabolite. Also acts as a malyl-CoA thioesterase to detoxify malyl-CoA, a side product of citric acid cycle enzymes, which is toxic for the vitamin B12-dependent enzyme MMUT. Also acts as a malate synthase in vitro, converting glyoxylate and acetyl-CoA to malate. Also acts as a beta-methylmalate synthase in vitro, by mediating conversion of glyoxylate and propionyl-CoA to beta-methylmalate. Also has very weak citramalate synthase activity in vitro.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0#function" }, { "database": "UniProtKB", "id": "ARBA00094500", "url": "https://www.uniprot.org/uniprotkb/ARBA00094500#function" }, { "database": "UniProtKB", "id": "A0A5G2R6V1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6V1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CLYBL", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0", "locus": { "chromosome": "11", "start_pos": 68767546, "end_pos": 68507877, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009519", "url": "https://www.ensembl.org/id/ENSSSCG00000009519" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009519", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009519", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154139", "url": "https://www.ncbi.nlm.nih.gov/gene/100154139", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011206", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011206", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015813", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015813", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040442", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040442", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154139", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154139", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AWLFCPA", "url": "https://omabrowser.org/oma/group/AWLFCPA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287ABH0", "url": "https://www.orthodb.org/?gene=A0A287ABH0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11105", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11105", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11105:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11105:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03328", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03328", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020921514", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921514", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "18181", "url": "https://www.rhea-db.org/rhea/18181", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "22612", "url": "https://www.rhea-db.org/rhea/22612", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "38291", "url": "https://www.rhea-db.org/rhea/38291", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "47628", "url": "https://www.rhea-db.org/rhea/47628", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287ABH0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6V1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6V1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6V1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6V1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RP25", "url": "https://www.uniprot.org/uniprotkb/F1RP25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RP25-1", "url": "https://www.uniprot.org/uniprotkb/F1RP25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALRLLRRAARGAAAAAALPRLRASLATDVSSLRHSSSPSHKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAVNKKNEARLRIVKTLEDFDLGPTEKCVRINSVSSGLAEEDLEVLLQSRVLPSSLMLPKVEGPEEIRWFSDKFSLYLKGRKLEQPMNLIPFVETAMGLLNFKAVCEEALKNGPQVGLSLDAVIFGGEDFRASIGATSRKETQDILYARQKIIVVAKAFGLQAIDLVYIDFRDGEGLLKQAREGAAMGFTGKQVIHPNQIAVVQEQFSPSPEKIKWAEELIAAFKEHQQLGKGAFTFGGSMIDMPLLKQAQHIVTLATSIKEK", "length": 341, "header": "tr|A0A287ABH0-1|A0A287ABH0_PIG Isoform 1 of Citramalyl-CoA lyase, mitochondrial OS=Sus scrofa OX=9823 GN=CLYBL PE=1 SV=1 CANONICAL=A0A287ABH0-1" }, "isoforms": [ { "isoform_ac": "A0A287ABH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0/entry#A0A287ABH0-1", "sequence": { "sequence": "MALRLLRRAARGAAAAAALPRLRASLATDVSSLRHSSSPSHKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAVNKKNEARLRIVKTLEDFDLGPTEKCVRINSVSSGLAEEDLEVLLQSRVLPSSLMLPKVEGPEEIRWFSDKFSLYLKGRKLEQPMNLIPFVETAMGLLNFKAVCEEALKNGPQVGLSLDAVIFGGEDFRASIGATSRKETQDILYARQKIIVVAKAFGLQAIDLVYIDFRDGEGLLKQAREGAAMGFTGKQVIHPNQIAVVQEQFSPSPEKIKWAEELIAAFKEHQQLGKGAFTFGGSMIDMPLLKQAQHIVTLATSIKEK", "length": 341, "header": "tr|A0A287ABH0-1|A0A287ABH0_PIG Isoform 1 of Citramalyl-CoA lyase, mitochondrial OS=Sus scrofa OX=9823 GN=CLYBL PE=1 SV=1 CANONICAL=A0A287ABH0-1" }, "locus": { "chromosome": "11", "start_pos": 68760938, "end_pos": 68507883, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048518.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048518.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041149.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041149.1" } ] } }, { "isoform_ac": "A0A5G2R6V1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0/entry#A0A5G2R6V1-1", "sequence": { "sequence": "GRAAPASLATDVSSLRHSSSPSHKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAVNKKNEARLRIVKTLEDFDLGPTEKCVRINSVSSGLAEEDLEVLLQSRVLPSSLMLPKVEGPEEIRWFSDKFSLYLKGRKLEQPMNLIPFVETAMGLLNFKAVCEEALKNGPQVGLSLDAVIFGGEDFRASIGATSRKETQDILYARQKIIVVAKAFGLQAIDLVYIDFRDGEGLLKQAREGAAMGFTGKQVIHPNQIAVVQEQFSPSPEKIKWAEELIAAFKEHQQLGKGAFTFGGSMIDMPLLKQAQHIVTLATSIKEK", "length": 323, "header": "tr|A0A5G2R6V1-1|A0A287ABH0_PIG Computationally mapped isoform of Citramalyl-CoA lyase, mitochondrial OS=Sus scrofa OX=9823 GN=CLYBL PE=1 SV=1 CANONICAL=A0A287ABH0-1" }, "locus": { "chromosome": "11", "start_pos": 68760938, "end_pos": 68663000, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091427.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091427.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072060.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072060.1" } ] } }, { "isoform_ac": "F1RP25-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0/entry#F1RP25-1", "sequence": { "sequence": "MALRLLRRAARGAAAAAALPRLRASLATDVSSLRHSSSPSHKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAVNKKNEARLRIVKTLEDFDLGPTEKCVRINSVSSGLAEEDLEVLLQSRVLPSSLMLPKVEGPEEIRWAVCEEALKNGPQVGLSLDAVIFGGEDFRASIGATSRKETQDILYARQKIIVVAKAFGLQAIDLVYIDFRDGEGLLKQAREGAAMGFTGKQVIHPNQIAVVQEQFSPSPEKIKWAEELIAAFKEHQQLGKGAFTFGGSMIDMPLLKQAQHIVTLATSIKEK", "length": 307, "header": "tr|F1RP25-1|A0A287ABH0_PIG Computationally mapped isoform of Citramalyl-CoA lyase, mitochondrial OS=Sus scrofa OX=9823 GN=CLYBL PE=1 SV=4 CANONICAL=A0A287ABH0-1" }, "locus": { "chromosome": "11", "start_pos": 68760938, "end_pos": 68507883, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010437.4", "url": "https://www.ensembl.org/id/ENSSSCT00000010437.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010166.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010166.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R6V1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6V1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154139", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154139", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q54Q74-1", "protein_name": "Citrate lyase subunit beta-like protein", "gene_name": "clybl", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIHILKSVKKLRPLINNNNKLFFSSSTTTTTIIKKPGIFNKSQNIYDKPLRRVFFNVPGSDKRKIDKSLALSDTIDSIVLDLEDGVSVNRKQEARDTIQKAVVEESFGKAEVLIRVNSVDSGLLEDDIDMIGKISSYIDGLVIPKVEHPDHLIYITQLLREKCGESNANNLKFMACVESAISLINLKEICNYNEKMNSSNNNNKSQLNALIFASEDYCADTGITRTPTATELLYARSSVVNHAVANGLQAIDMVCINYKNSEVLKKETHEGVQLGFHGKQAIHPNQIDIINQSFRPSLEKFNFATKIVEQNEIHQSQGKGAFEIDGKMIDMPMVKWARNILSIENFYPPRDSEEIEQQQQ", "length": 360 }, "evidence": [ { "id": "A0A287ABH0", "url": "https://omabrowser.org/oma/group/A0A287ABH0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5I0K3-1", "protein_name": "Citramalyl-CoA lyase, mitochondrial", "gene_name": "Clybl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALCVLQNAVRGAAALPRLKASLVASVCRPGYSSLSNHKYVPRRAVLYVPGNDEKKIRKIPSLKVDCAVLDCEDGVAENKKNEARLRIAKTLEDFDLGTTEKCVRINSVSSGLAEADLETFLQARVLPSSLMLPKVEGPEEIQWFSDKFSLHLKGRKLEQPMNLIPFVETAMGLLNFKAVCEETLKIGPQVGLFLDAVVFGGEDFRASIGATSNKDTQDILYARQKIVVTAKAFGLQAIDLVYIDFRDEDGLLRQSREAAAMGFTGKQVIHPNQIAVVQEQFTPTPEKIRWAEELIAAFKEHQQLGKGAFTFQGSMIDMPLLKQAQNIVTLATSIKEK", "length": 338 }, "evidence": [ { "id": "A0A287ABH0", "url": "https://omabrowser.org/oma/group/A0A287ABH0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N0X4-1", "protein_name": "Citramalyl-CoA lyase, mitochondrial", "gene_name": "CLYBL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALRLLRRAARGAAAAALLRLKASLAADIPRLGYSSSSHHKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAANKKNEARLRIVKTLEDIDLGPTEKCVRVNSVSSGLAEEDLETLLQSRVLPSSLMLPKVESPEEIQWFADKFSFHLKGRKLEQPMNLIPFVETAMGLLNFKAVCEETLKVGPQVGLFLDAVVFGGEDFRASIGATSSKETLDILYARQKIVVIAKAFGLQAIDLVYIDFRDGAGLLRQSREGAAMGFTGKQVIHPNQIAVVQEQFSPSPEKIKWAEELIAAFKEHQQLGKGAFTFQGSMIDMPLLKQAQNTVTLATSIKEK", "length": 340 }, "evidence": [ { "id": "A0A287ABH0", "url": "https://omabrowser.org/oma/group/A0A287ABH0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R4N0-1", "protein_name": "Citramalyl-CoA lyase, mitochondrial", "gene_name": "Clybl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALCVLRNTVRGAAALPRLKASHVVSVYKPRYSSLSNHKYVPRRAVLYVPGNDEKKIRKIPSLKVDCAVLDCEDGVAENKKNEARLRIAKTLEDFDLGTTEKCVRINSVSSGLAEVDLETFLQARVLPSSLMLPKVEGPEEIRWFSDKFSLHLKGRKLEQPMNLIPFVETAMGLLNFKAVCEETLKTGPQVGLCLDAVVFGGEDFRASIGATSNKDTQDILYARQKVVVTAKAFGLQAIDLVYIDFRDEDGLLRQSREAAAMGFTGKQVIHPNQIAVVQEQFTPTPEKIQWAEELIAAFKEHQQLGKGAFTFRGSMIDMPLLKQAQNIVTLATSIKEK", "length": 338 }, "evidence": [ { "id": "A0A287ABH0", "url": "https://omabrowser.org/oma/group/A0A287ABH0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0" } ], "pmid": "" }, { "name": "acyl-CoA hydrolase activity", "id": "GO:0016289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016289", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0" } ], "pmid": "" }, { "name": "malate synthase activity", "id": "GO:0004474", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004474", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0" } ], "pmid": "" }, { "name": "(S)-citramalyl-CoA lyase activity", "id": "GO:0047777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047777", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0" } ], "pmid": "" }, { "name": "catalytic activity", "id": "GO:0003824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003824", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein homotrimerization", "id": "GO:0070207", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070207", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH0" } ], "pmid": "" }, { "name": "regulation of cobalamin 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"https://www.uniprot.org/uniprotkb/A0A287ABH8" } ] }, { "name": "RASSF9", "type": "synonym", "evidence": [ { "id": "XP_020948443", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948443" } ] } ], "protein_names": [ { "name": "Ras association domain-containing protein 9", "type": "recommended", "evidence": [ { "id": "A0A287ABH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8/entry#names_and_taxonomy" } ] }, { "name": "PAM COOH-terminal interactor protein 1", "type": "synonym", "evidence": [ { "id": "A0A287ABH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8/entry#names_and_taxonomy" } ] }, { "name": "Peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor", "type": "synonym", "evidence": [ { "id": "A0A287ABH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8/entry#names_and_taxonomy" } ] }, { "name": "ras association domain-containing protein 9 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020948443", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948443" } ] } ], "function": [ { "annotation": "May play a role in regulating vesicuar trafficking in cells.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH8", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8#function" }, { "database": "UniProtKB", "id": "ARBA00053167", "url": "https://www.uniprot.org/uniprotkb/ARBA00053167#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH8", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RASSF9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8", "locus": { "chromosome": "5", "start_pos": 96341750, "end_pos": 96297661, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000034948", "url": "https://www.ensembl.org/id/ENSSSCG00000034948" } ] } } ], "crossref": [ { "id": "ENSSSCG00000034948", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034948", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16133", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16133", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110260805", "url": "https://www.ncbi.nlm.nih.gov/gene/110260805", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033633", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033633", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VQESYLM", "url": "https://omabrowser.org/oma/group/VQESYLM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15286", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15286", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15286:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15286:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27976", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27976", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020948443", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948443", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ABH8", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPFGRNLLKTRHKNRSPTKDVDSEEKEIVVWVCQEEKTVCGLTRRTTSADVIQALLEEHETTFGEKRFLLGKPSDYCIIEKWRGSERVLPPLTRILKLWKAWGDEQPNMQFVLVKADAFLPVPLWRTAEAKLVQNTEKLWELSPANYMKTLPPDKQKRIVRKTFRKLAKIKQDSVSQDRDSMETLVHLIISQDHTIHQQVKRMKELDLEIEKCEAKFHLDRVENDGENYVQDAYLMPNFSEVEQKLGLEYDENQILEDLSESDGILQLEERLTYYRKLIDKLSAEIEKEVRSVGTEINEDAEGAAASELESSNLESVKCDLEKSMKAGLTIHSHLSGIQKEIKYSDSLLQMKAKEYELLAKEFTSLHISSKDECQQKDNRGKESEVTTISGEVPPFTQKVFNTHTNDTDSDTGISSNHSQDSEATGGDAVLWSP", "length": 435, "header": "tr|A0A287ABH8-1|A0A287ABH8_PIG Isoform 1 of Ras association domain-containing protein 9 OS=Sus scrofa OX=9823 GN=RASSF9 PE=4 SV=1 CANONICAL=A0A287ABH8-1" }, "isoforms": [ { "isoform_ac": "A0A287ABH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8/entry#A0A287ABH8-1", "sequence": { "sequence": "MAPFGRNLLKTRHKNRSPTKDVDSEEKEIVVWVCQEEKTVCGLTRRTTSADVIQALLEEHETTFGEKRFLLGKPSDYCIIEKWRGSERVLPPLTRILKLWKAWGDEQPNMQFVLVKADAFLPVPLWRTAEAKLVQNTEKLWELSPANYMKTLPPDKQKRIVRKTFRKLAKIKQDSVSQDRDSMETLVHLIISQDHTIHQQVKRMKELDLEIEKCEAKFHLDRVENDGENYVQDAYLMPNFSEVEQKLGLEYDENQILEDLSESDGILQLEERLTYYRKLIDKLSAEIEKEVRSVGTEINEDAEGAAASELESSNLESVKCDLEKSMKAGLTIHSHLSGIQKEIKYSDSLLQMKAKEYELLAKEFTSLHISSKDECQQKDNRGKESEVTTISGEVPPFTQKVFNTHTNDTDSDTGISSNHSQDSEATGGDAVLWSP", "length": 435, "header": "tr|A0A287ABH8-1|A0A287ABH8_PIG Isoform 1 of Ras association domain-containing protein 9 OS=Sus scrofa OX=9823 GN=RASSF9 PE=4 SV=1 CANONICAL=A0A287ABH8-1" }, "locus": { "chromosome": "5", "start_pos": 96339039, "end_pos": 96297792, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051398.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051398.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041322.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041322.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH8", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QFL9-1", "protein_name": "Ras association domain-containing protein 9", "gene_name": "Rassf9", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAPFGRNLLKTRHKNRSPTKDMDSEEKEIVVWVCQEEKIVCGLTKRTTSTDVIQALLEEHEATFGEKRFLLGKASDYCIVEKWRGSERALPPLTRILKLWKAWGDEQANMQFVLVKTDAFLPVPLWRTAETKLVQNSEKPWELSPANYMKTLPPDKQKRIVRKTFRKLAKIKQDMFSHDRDSMETLVHLIISQDHTIHQQVQRMKELDMEIEKCEAKIHLDRVGNDGDNYVQEAYLMPRVSEKEQMLDFQPEDSQALVDVHDGEGMAQLEERLQYYRVLIEKLSAEIERELKSLGIDGSEDSEGAAACELENSDLENVKCDLEKSMKAGLKIYSHLSGIQKEIKYSDSLLQMKAREYELLAKEFSSFHLSNKDGCQLKENKGKEHEAASGSAEIPPLTQRAFNTYTNDTDSDTGISSNHSQDSETTLGDVLLLST", "length": 435 }, "evidence": [ { "id": "A0A287ABH8", "url": "https://omabrowser.org/oma/group/A0A287ABH8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O75901-1", "protein_name": "Ras association domain-containing protein 9", "gene_name": "RASSF9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPFGRNLLKTRHKNRSPTKDMDSEEKEIVVWVCQEEKLVCGLTKRTTSADVIQALLEEHEATFGEKRFLLGKPSDYCIIEKWRGSERVLPPLTRILKLWKAWGDEQPNMQFVLVKADAFLPVPLWRTAEAKLVQNTEKLWELSPANYMKTLPPDKQKRIVRKTFRKLAKIKQDTVSHDRDNMETLVHLIISQDHTIHQQVKRMKELDLEIEKCEAKFHLDRVENDGENYVQDAYLMPSFSEVEQNLDLQYEENQTLEDLSESDGIEQLEERLKYYRILIDKLSAEIEKEVKSVCIDINEDAEGEAASELESSNLESVKCDLEKSMKAGLKIHSHLSGIQKEIKYSDSLLQMKAKEYELLAKEFNSLHISNKDGCQLKENRAKESEVPSSNGEIPPFTQRVFSNYTNDTDSDTGISSNHSQDSETTVGDVVLLST", "length": 435 }, "evidence": [ { "id": "A0A287ABH8", "url": "https://omabrowser.org/oma/group/A0A287ABH8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O88869-1", "protein_name": "Ras association domain-containing protein 9", "gene_name": "Rassf9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPFGRNLLKTRHKNRSPTKDMDPEEKEIVVWVCQEEKIVCGLTKRTTSIDVIQALLEEHEATFGEKRFLLGKASDYCIVEKWRGSERALPPLTRILKLWKAWGDEQPNMQFVLVKTDAFLPVPLWRTAETKLVQNNEKPWELSPANYMKTLPPDKQKRIVRKTFRKLAKIRQDTGSHDRDNMECLVHLIISQDHTIHQQVQRMKELDMEIEKCEAKIHLDRIGNDGADYVQEAYLMPRSSEEEQKLDFQSEDNQTLEDLNDGEGVSQLEEQLQYYRALIDKLSAEIEREVKGAGTDGSEDMEGAAACELENSDLESVKCDLEKSMKAGLKIHSHLSGIQREIKYSDSLLQMKAREYELLAKEFSSLHISSKDGCQGKENRGKEAEASSSNGEIPPLTQRVFNTYTNDTDSDTGISSNHSQDSETTLGDVLLLAT", "length": 435 }, "evidence": [ { "id": "A0A287ABH8", "url": "https://omabrowser.org/oma/group/A0A287ABH8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8K342-1", "protein_name": "Ras association domain-containing protein 9", "gene_name": "Rassf9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPFGRNLLKTRHKNRSPTKDMDPEEKEIVVWVCQDEKIVCGLTKRTTSIDVIQALLEEHEATFGEKRFLLGKASDYCIVEKWRGSERALPPLTRILKLWKAWGDEQPNMQFVLVKTDAFLPVPLWRTAETKLVQNNEKPWELSPANYMKTLPPDKQKRIVRKTFRKLAKIRQDTSSHDRDNMECLVHLIISQDHTIHQQVQRMKELDMEIEKCEAKIHLDRVGNDGANYVHEAYLMPRLSDEEQKLDIQAEINQTLEDLNDSEGMAQLEEQLQYYRALIDKLSAEIEREVKGAGIDGIEDMEGAAACELENSDLESVKCDLETSMKAGLTIHSHLSGIQREIKYSDSLLQMKAREYELLAKEFSSLHISNKDGCQGKENRGKEAEAPSSNGETPPLTQRVFNIYTNDTDSDTGISSNHSQDSETTLGDVLLLAT", "length": 435 }, "evidence": [ { "id": "A0A287ABH8", "url": "https://omabrowser.org/oma/group/A0A287ABH8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "R4GIZ3-1", "protein_name": "Ras association domain-containing protein 9", "gene_name": "RASSF9", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPFGRNLLKTRHKNRPPSKDMASNEREIVVWVCQEEKIVCGLTKRTTCAEVIQALLEEHQATFGEKKVLFGKPSDYCIVEKWRGSERVLPPLTKILRLWKAWGEEQPNLHFVLVKSDAFLSFPLWKTAEAKVVQNIEKQWELSPANYMKMLPIDKQKKIVRKTFRKLAKLKQDSVQQDRDNMETLIHLIISQDHTIHQQVLRMKELDMEIEKCEAKFHLDRVANDGENYVQDSYLMINPNEAEQQGSRADDQKEMHEYFSKSEGILQVEERLKHHKQLIEKLCAEIEKEVHGICSEKNGDVVHTEGATNAQLENSDLDNVKYELEKSMKDGLRINSYLSCIQKELTYRDSLLQKKEKEYELLTEEFNLLHVKDNVEARLPSNEELPKGSGISSNSIAVPDFVHRVTNLDINDTDSDTGISSTHSQDSEITSGDMVLLST", "length": 440 }, "evidence": [ { "id": "A0A287ABH8", "url": "https://omabrowser.org/oma/group/A0A287ABH8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "trans-Golgi network transport vesicle membrane", "id": "GO:0012510", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012510", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH8", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH8", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8" } ], "pmid": "" }, { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH8", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABH8", "url": "https://www.uniprot.org/uniprotkb/A0A287ABH8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, 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"https://www.uniprot.org/uniprotkb/A0A287ABP7/entry#A0A287AZA3-1", "sequence": { "sequence": "MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFSMPSAPDFETLFSQAQLFISACNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGVLKQAIDKMQMSANQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGAYDARHFLCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNSPSELRTLVNKHSETFVRDSNMGLVKQCLSSLYKKNIQRLTKIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLQSIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSYS", "length": 394, "header": "tr|A0A287AZA3-1|A0A287AZA3_PIG Computationally mapped isoform of COP9 signalosome subunit 3 OS=Sus scrofa OX=9823 GN=COPS3 PE=1 SV=2 CANONICAL=A0A287ABP7-1" }, "locus": { "chromosome": "12", "start_pos": 61023651, "end_pos": 61001341, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066084.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066084.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049471.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049471.2" } ] } }, { "isoform_ac": "A0A5G2QP70-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABP7/entry#A0A5G2QP70-1", "sequence": { "sequence": "MTAGGDTVRRGRGMRRMHTRQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFSMPSAPDFETLFSQAQLFISACNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGVLKQAIDKMQMSANQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGAYDARHFLCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNSPSELRTLVNKHSETFVRDSNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLQSIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSYS", "length": 426, "header": "tr|A0A5G2QP70-1|A0A287ABP7_PIG Computationally mapped isoform of COP9 signalosome complex subunit 3 OS=Sus scrofa OX=9823 GN=COPS3 PE=1 SV=1 CANONICAL=A0A287ABP7-1" }, "locus": { "chromosome": "12", "start_pos": 61023651, "end_pos": 60994375, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091430.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091430.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060077.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060077.1" } ] } }, { "isoform_ac": "A0A8W4FQY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABP7/entry#A0A8W4FQY7-1", "sequence": { "sequence": "MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFSMPSAPDFETLFSQAQLFISACNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGVLKQAIDKMQMSANQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGAYDARHFLCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLQSIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSYS", "length": 345, "header": "tr|A0A8W4FQY7-1|A0A287ABP7_PIG Computationally mapped isoform of COP9 signalosome complex subunit 3 OS=Sus scrofa OX=9823 GN=COPS3 PE=1 SV=1 CANONICAL=A0A287ABP7-1" }, "locus": { "chromosome": "12", "start_pos": 61023651, "end_pos": 61005664, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092986.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092986.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080875.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080875.1" } ] } }, { "isoform_ac": "F1SB16-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABP7/entry#F1SB16-1", "sequence": { "sequence": "MFTPQMHPPHLRDSGAAAATALDSAGVGQALRWEALLAGAAAEGSPLFSAEKMRERDVYVSTYTRVSVKFVKFSMPSAPDFETLFSQAQLFISACNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGVLKQAIDKMQMSANQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGAYDARHFLCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNSPSELRTLVNKHSETFVRDSNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLQSIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSYS", "length": 430, "header": "tr|F1SB16-1|F1SB16_PIG Computationally mapped isoform of COP9 signalosome complex subunit 3 OS=Sus scrofa OX=9823 GN=COPS3 PE=1 SV=4 CANONICAL=A0A287ABP7-1" }, "locus": { "chromosome": "12", "start_pos": 61023651, "end_pos": 61006810, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019646.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019646.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019126.5", "url": "https://www.ensembl.org/id/ENSSSCP00000019126.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP70", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP70" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6781823", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6781823", "resource": "Reactome", "description": "Formation of TC-NER Pre-Incision Complex" }, { "id": "R-SSC-8856825", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856825", "resource": "Reactome", "description": "Cargo recognition for clathrin-mediated endocytosis" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABP7", "url": "https://www.uniprot.org/uniprotkb/A0A287ABP7" } ], "pmid": "" }, { "name": "COP9 signalosome", "id": "GO:0008180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008180", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABP7", "url": "https://www.uniprot.org/uniprotkb/A0A287ABP7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABP7", "url": "https://www.uniprot.org/uniprotkb/A0A287ABP7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABP7", "url": "https://www.uniprot.org/uniprotkb/A0A287ABP7" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABP7", "url": "https://www.uniprot.org/uniprotkb/A0A287ABP7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABP7", "url": "https://www.uniprot.org/uniprotkb/A0A287ABP7" } ], "pmid": "" }, { "name": "regulation of DNA damage response, signal transduction by p53 class mediator", "id": "GO:0043516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043516", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABP7", "url": "https://www.uniprot.org/uniprotkb/A0A287ABP7" } ], "pmid": "" }, { "name": "protein deneddylation", "id": "GO:0000338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000338", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABP7", "url": "https://www.uniprot.org/uniprotkb/A0A287ABP7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ABP7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 423, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ABP7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ABP7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ABP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABP7" }, { "id": "PS50250", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50250" } ], "ann_type": 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"count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ABQ6-1", "uniprot_ac": "A0A287ABQ6", "uniprot_id": "A0A287ABQ6_PIG", "mass": { "chemical_mass": 10780.0, "monoisotopic_mass": 10780.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A287ABQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABQ6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ABQ6", "url": "https://www.uniprot.org/uniprotkb/A0A287ABQ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287ABQ6", "locus": {} } ], "crossref": [ { "id": "A0A287ABQ6", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ABQ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR032157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR33559", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33559", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33559:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33559:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A287ABQ6", "url": "https://www.uniprot.org/uniprotkb/A0A287ABQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "HDGLPRVGAVSQNNFRTSLWEQIVHFHVTRLMDSLFLWVKATRKLSNLAMAMCCRCGSDPRLLWLCRRPAAAVTTGPLAWEPPYATDVTLKIQNE", "length": 95, "header": "tr|A0A287ABQ6-1|A0A287ABQ6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287ABQ6-1" }, "isoforms": [ { "isoform_ac": "A0A287ABQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABQ6/entry#A0A287ABQ6-1", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCT00000049607.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041260.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041260.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABS1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABS1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ABS1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 178, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ABS1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ABS1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], 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containing 9", "type": "synonym", "evidence": [ { "id": "A0A287ABU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU0/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 9 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_020950288", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950288" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ABU0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU0", "locus": { "chromosome": "6", "start_pos": 53080985, "end_pos": 53065345, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024240", "url": "https://www.ensembl.org/id/ENSSSCG00000024240" } ] } } ], "crossref": [ { "id": "A0A287ABU0", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ABU0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024240", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024240", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517590", "url": "https://www.ncbi.nlm.nih.gov/gene/100517590", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029336", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029336", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517590", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517590", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DDRWEPK", "url": "https://omabrowser.org/oma/group/DDRWEPK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15635", "url": 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{ "id": "I3LSP2-1", "url": "https://www.uniprot.org/uniprotkb/I3LSP2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSATLDLKSKEEKDAELDKRIEALRRKNEALIRRYQEIEEDRKKAELEGVAVTAPRKGRSVEKENVAVGTEKTLGPSRRSPGTPRPPGASKGGRIPPQQGGRAGMGRASRSWEDSPGEQLRGGAGGRGRRGRGRGSPRLAGAGDASTADRKSKEWEERRRQNIEKMNEEMEKIAEYERNQREGVLEPNPVRNFLDDPRRRSGPLEEPERDRREGSRRHGRNWGGSDFERVRCGLEQERQGRRAGLGGAGDMTLSMTGRERSEYLRWKQEREKIDQERLQRHRKPTGQWRREWDAEKTDGMFKDGPAAAPELSHRYDDQAWARPPKPPTFREFLSQHKAEVSRRRRKSSRPQAKAVPGAYSDHDDRWESKEAVSPAPEPPQPVRPEEPPTQLPETPTPAHQPPEDEGEEYEGEAGDGEDEEWEDVSEEEEIEEEEAEEEEEEEPAPTGDHQPHKAEPSGSPAREHADQEPARPEEPLPPPQAPATPSSPFSPSGGHQPVSDWGEEMELNSPRTPHPADALSPGGDPPASASLESGPSLPGTQKAEEEGSEAAPEAGREGQETAISDFQRASPNS", "length": 573, "header": "tr|A0A287ABU0-1|A0A287ABU0_PIG Isoform 1 of Coiled-coil domain containing 9 OS=Sus scrofa OX=9823 GN=CCDC9 PE=4 SV=1 CANONICAL=A0A287ABU0-1" }, "isoforms": [ { "isoform_ac": "A0A287ABU0-1", "url": 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"ENSSSCT00000049575.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049575.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041280.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041280.1" } ] } }, { "isoform_ac": "I3LSP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU0/entry#I3LSP2-1", "sequence": { "sequence": "MSATLDLKSKEEKDAELDKRIEALRRKNEALIRRYQEIEEDRKKAELEGVAVTAPRKGRSVEKENVAVGTEKTLGPSRRSPGTPRPPGASKGGRIPPQQGGRAGMGRASRSWEDSPGEQLRGGAGGRGRRGRGRGSPRLAGAGDASTADRKSKEWEERRRQNIEKMNEEMEKIAEYERNQREGVLEPNPVRNFLDDPRRRSGPLEEPERDRREGSRRHGRNWGGSDFERVRCGLEQERQGRRAGLGGAGDMTLSMTGRERSEYLRWKQEREKIDQERLQRHRKPTGQWRREWDAEKTDGMFKDGPAAAPELSHRYDDQAWARPPKPPTFREFLSQHKAEVSRRRRKSSRPQAKAVPGAYSDHDDRWESKEAVSPAPEPPQPVRPEEPPTQLPETPTPAHQPPEDEGEEYEGEAGDGEDEEWEDVSEEEEIEEEEAEEEEEEEPAPTGDHQPHKAEPSGSPAREHADQEPARPEEPLPPPQAPATPSSPFSPSGGHQPVSDWGEEMELNSPRTPHPADALSPGEAWPFFGNA", "length": 531, "header": "tr|I3LSP2-1|A0A287ABU0_PIG Computationally mapped isoform of Coiled-coil domain containing 9 OS=Sus scrofa OX=9823 GN=CCDC9 PE=4 SV=2 CANONICAL=A0A287ABU0-1" }, "locus": { "chromosome": "6", "start_pos": 53076676, "end_pos": 53067139, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026006.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026006.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027135.2", "url": "https://www.ensembl.org/id/ENSSSCP00000027135.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 396, "start_aa": "Thr", "end_pos": 396, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr396", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 484, "start_aa": "Thr", "end_pos": 484, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr484", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LSP2", "url": "https://www.uniprot.org/uniprotkb/I3LSP2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517590", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517590", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1QCF9-1", "protein_name": "Coiled-coil domain-containing protein 9 isoform X1", "gene_name": "ccdc9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSAVVDLKTKEEKDAELDKRIEALRKKNEALVKRYQEIQEDKKKAEQEGIAVTTARKPRPHEHESERRKTEKENFTVTVDLSKPAGEKRFTNDRKPAGPRGDPGPEEEEPGRPHGESPPNRTGSGRLSRGGQRRERREPRPNKGEPRPDRQPQDGEVGESPAHTERSSRGGRRGGRGGGGGGGGMQAGPGSDRKSKEWEEKRRQNIEKMNEEMEKIAEYERGQRADGEKIPMRNFLDDPRRSGPIPDTDRKEGSRRHVRNWGGVDFDNVKTGPEVEKEWTNRRPGGKGSVDMTLSMTGRERAEYLRWKKEREQIDEERLARHRNATGQWRREWDAQKTDTMFKEESAVAGESMQEQSNRRAARGRNTHAQQRGAPSEDNKKPPKTPTFGDFLGQGKPRQAGGRGRGKGKSYSMHDNRWEGENEEEKGRKEEQEKEKDEEKDKEKENENEDSTLKAPLSEKKTEEEEEDEWEDASDGEEEDVEEDEKADHEEDTKDAKSKEKSISSAASSTPSPKGQRTPRPKVHIPSPKEMLSTPEAAKPPSPFSPLDGHQPVSDWGEEMEMLSPKSSLGESPLRPSSTESSPAQAKSNPAEKDATDTHSHSEESEITPTVVDSTSCETKKESLRAKSPDTTTSSSQEPIVSPTSDSTSQSKEIDVPNVELDQSQCETSPEEETSVDSSEQPSTG", "length": 685 }, "evidence": [ { "id": "A0A287ABU0", "url": "https://omabrowser.org/oma/group/A0A287ABU0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6QX85-1", "protein_name": "Coiled-coil domain containing 9", "gene_name": "CCDC9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSAALDLKSKEEKDAELDKRIEALRRKNEALIRRYQEIEEDRKKAELEGVAVTGPRKSRSVEKENVAVEKNLGPSRRSPGTPRPPGVSKGGRIPPQHGGRAGMGRTSRSWEDSPGEQPRGGAGGRSRRGRGRGSPHLSGGGDASTADRKSKEWEERRKQNIEKMNEEMEKIAEYERNQREGVLEPNPVRNFLDDPRRRSGPLEEPERDRREGSRRHGRNWGGSDFERVRYGLEQERQGRRAGLGGAGDMTLSMTGRERSEYLRWKQEREKIDQERLQRHRKPTGQWRREWDAEKTDGMFKDGPAVALEPSHRYDDQAWARPPKPPTFREFLSQHKTEVSRRKKKSSRPQPKAAPRAYSDHDDRWEMKEAMSTAPEPPQPALPKEAPTQLPETPAPAHRPPEDEGEEGEDEGEDEEWEDVSEDEEEEEEIEEEEEADDEEEEPAGDHQPQEAEPSGSPAREHGDKETARPEEPLPLPQAPATPSSPFSPPGGHQPVSDWGEEMELNSPRTAHPADAVSPGGDQPAPASLESGPSAPGAQKAEEEGSEAAPEADPEGQETAEIADFQRVRFCKVVAAASPPGAAR", "length": 583 }, "evidence": [ { "id": "A0A287ABU0", "url": "https://omabrowser.org/oma/group/A0A287ABU0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "M0RA86-1", "protein_name": "Coiled-coil domain containing 9", "gene_name": "Ccdc9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRPSSGATRCPSPALETPSPLLPAEIEEDRKKAELEGVAVTAPRKSRSMEKENMAVEEKNLGPSRRTPGTPRPPGASRGGRTHPQQGGRAGVGRASRGWEDGAGEQLRGGTGGRGRRGRGRGSPHLLGAGDNSTSDRKSKEWEERRRQNIEKMNEEMERIAEYERNQREGVLEPNPVRNFLDDPRRRGGPLEESERDRREGSRRHGRNWGGSDFERVRSGLEQERQGRRAGLGSGGDMTMSMTGRERSEYLRWKQEREKIDQERLQRHRKPTGQWRREWDAEKTDGMFKDGPAPTHEPSHRYDDQAWARPPKPPTFGEFLSQHKAEVNSRRRRKNSRPQAKVAPRAYSDHDNRWETKEEAVSPAPKSSQSMSLEETPTQPPETPAPAHRPPEEDGEEDVGEEEEGEEEGEDDDEDEEWEDVSEDVTEEEEEEEEEFEEEEESPKEQEAAAVPDHQPEAEPAGKPTCEQVDPVPAGPQELLSPVPVEPPSPFSPSEDHQPVSDWGGDQPALASLESRPTLAGTLKSEEEGSEASPGGMHEAGGEVVGPEGQETAEITDFQRSRNPEDAGGRGGSAGLPGSQAGCSPPCSPPWILRL", "length": 595 }, "evidence": [ { "id": "A0A287ABU0", "url": "https://omabrowser.org/oma/group/A0A287ABU0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VC31-1", "protein_name": "Coiled-coil domain-containing protein 9", "gene_name": "Ccdc9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTLDLKSKEEKDAELDKRIEALRRKNEALIRRYQEIEEDRKKAELEGVAVTAPRKSRSMEKENMAVEEKSLGPSRRTPGTPRPPGASRGGRTHPQQGGRAGVGRASQGWEDGAGEQLRGGPGGRGRRGRGRGSPHLLGAGDNSTSDRKSKEWEERRRQNIEKMNEEMEKIAEYERNQREGVLEPNPVRNFLDDPRRRGGPLEESERDRREGSRRHGRNWGGSDFERVRSGLEQERQGRRAGLGSGGDMTMSMTGRERSEYLRWKQEREKIDQERLQRHRKPTGQWRREWDAEKTDGMFKDGPAPTHELSHRYDDQAWARPPKPPTFGEFLSQHKAEVSSRRRRKNSRPQAKVAPRAYSDHDNRWETREEAVSSAPESSQSISLEETPTQASETPAPAHRPPEEDGEEDVGEEEEGEEEGEDEEDEEWEDVSEDVTEEEEEEEEEFEEDEEGPKDQEAATVPDHQPEAEPAGKPTCEQVDPVPAGSQELLSPVPVEPPIPFSPSEDHQPVSDWGEEMELNSPGTAHLPGTHSSGEAWPFANA", "length": 543 }, "evidence": [ { "id": "A0A287ABU0", "url": "https://omabrowser.org/oma/group/A0A287ABU0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y3X0-1", "protein_name": "Coiled-coil domain-containing protein 9", "gene_name": "CCDC9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAATLDLKSKEEKDAELDKRIEALRRKNEALIRRYQEIEEDRKKAELEGVAVTAPRKGRSVEKENVAVESEKNLGPSRRSPGTPRPPGASKGGRTPPQQGGRAGMGRASRSWEGSPGEQPRGGGAGGRGRRGRGRGSPHLSGAGDTSISDRKSKEWEERRRQNIEKMNEEMEKIAEYERNQREGVLEPNPVRNFLDDPRRRSGPLEESERDRREESRRHGRNWGGPDFERVRCGLEHERQGRRAGLGSAGDMTLSMTGRERSEYLRWKQEREKIDQERLQRHRKPTGQWRREWDAEKTDGMFKDGPVPAHEPSHRYDDQAWARPPKPPTFGEFLSQHKAEASSRRRRKSSRPQAKAAPRAYSDHDDRWETKEGAASPAPETPQPTSPETSPKETPMQPPEIPAPAHRPPEDEGEENEGEEDEEWEDISEDEEEEEIEVEEGDEEEPAQDHQAPEAAPTGIPCSEQAHGVPFSPEEPLLEPQAPGTPSSPFSPPSGHQPVSDWGEEVELNSPRTTHLAGALSPGEAWPFESV", "length": 531 }, "evidence": [ { "id": "A0A287ABU0", "url": "https://omabrowser.org/oma/group/A0A287ABU0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABU0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "exon-exon junction complex", "id": "GO:0035145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035145", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABU0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ABU0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 573, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ABU0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ABU0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 396, 484 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ABW1-1", "uniprot_ac": "A0A287ABW1", "uniprot_id": "A0A287ABW1_PIG", "mass": { "chemical_mass": 45692.0, "monoisotopic_mass": 45692.0 }, "refseq": {}, "gene_names": [ { "name": "TEDC1", "type": "recommended", "evidence": [ { "id": "A0A287ABW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABW1" } ] } ], "protein_names": [ { "name": "Tubulin epsilon and delta complex 1", "type": "synonym", "evidence": [ { "id": "A0A287ABW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ABW1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ABW1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABW1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TEDC1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABW1", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000040089", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040089", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027996", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027996", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043535", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043535", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR35076", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35076", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35076:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35076:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14970", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14970", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ABW1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABW1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7V2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7V2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7V2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRRRRCRVGPDEATRALPEAIAALSRTLPAGPSPETFRRAKFDCPEAAPALWRLLFRVLSPGPPDGASASLSLEAQARSVKSALRSQGYPSQALAQLPDNGSQGSRQLLLALAWLLARGPLLEQLLAQSRVRLGDEMPVCECEALASPGPPAPGMGEAGHVDIRHLQWLMGKLRFRWRNLMASQQEQCALLGQIHLYTRGCHSDRSLGHLSVTETELLRDPEGGRQLLRRLESENARLEAALEWRRREQVFWQWMDTVLGASQPTFLPRSPEPGARELEPVARELQALWEQLQEAVEARRAAWEARVGDRGPAWSAARRALDEVVGQDLAALQRAWEPGGGLTQPHGPRRLVRTEAGAPGGPGLRAPEVIEALRTQEAHLEVVLRQLQGHCRQELARLARALPGLIWIPPPGR", "length": 414, "header": "tr|A0A287ABW1-1|A0A287ABW1_PIG Isoform 1 of Tubulin epsilon and delta complex 1 OS=Sus scrofa OX=9823 GN=TEDC1 PE=4 SV=2 CANONICAL=A0A287ABW1-1" }, "isoforms": [ { "isoform_ac": "A0A287ABW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABW1/entry#A0A287ABW1-1", "sequence": { "sequence": "MGRRRRCRVGPDEATRALPEAIAALSRTLPAGPSPETFRRAKFDCPEAAPALWRLLFRVLSPGPPDGASASLSLEAQARSVKSALRSQGYPSQALAQLPDNGSQGSRQLLLALAWLLARGPLLEQLLAQSRVRLGDEMPVCECEALASPGPPAPGMGEAGHVDIRHLQWLMGKLRFRWRNLMASQQEQCALLGQIHLYTRGCHSDRSLGHLSVTETELLRDPEGGRQLLRRLESENARLEAALEWRRREQVFWQWMDTVLGASQPTFLPRSPEPGARELEPVARELQALWEQLQEAVEARRAAWEARVGDRGPAWSAARRALDEVVGQDLAALQRAWEPGGGLTQPHGPRRLVRTEAGAPGGPGLRAPEVIEALRTQEAHLEVVLRQLQGHCRQELARLARALPGLIWIPPPGR", "length": 414, "header": "tr|A0A287ABW1-1|A0A287ABW1_PIG Isoform 1 of Tubulin epsilon and delta complex 1 OS=Sus scrofa OX=9823 GN=TEDC1 PE=4 SV=2 CANONICAL=A0A287ABW1-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 3522956, "end_pos": 3515601, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063560.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063560.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041300.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041300.2" } ] } }, { "isoform_ac": "A0A5G2QHJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABW1/entry#A0A5G2QHJ1-1", "sequence": { "sequence": "MGRRRRCRVGPDEATRALPEAIAALSRTLPAGPSPETFRRAKFDCPEAAPALWRLLFRVLSPGPPDGASASLSLEAQARSVKSALRSQGYPSQALAQLPDNGSQGSRQLLLALAWLLARGPLLEQLLAQSRVRLGDEMPVCECEALASPGPPAPGMGEAGHVDIRHLQWLMGKLRFRWRNLMASQQEQCALLGQLLRRLESENARLEAALEWRRREQVFWQWMDTVLGASQPTFLPRSPEPGARELEPVARELQALWEQLQEAVEARRAAWEARVGDRGPAWSAARRALDEVVGQDLAALQRAWEPGGGLTQPHGPRRLVRTEAGAPGGPGLRAPEVIEALRTQEAHLEVVLRQLQGHCRQELARLARALPGLIWIPPPGR", "length": 381, "header": "tr|A0A5G2QHJ1-1|A0A287ABW1_PIG Computationally mapped isoform of Tubulin epsilon and delta complex 1 OS=Sus scrofa OX=9823 GN=TEDC1 PE=4 SV=1 CANONICAL=A0A287ABW1-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 3522956, "end_pos": 3515601, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076728.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076728.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063325.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063325.1" } ] } }, { "isoform_ac": "A0A8W4F7V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABW1/entry#A0A8W4F7V2-1", "sequence": { "sequence": "MLAQSRVRLGDEMPVCEIHLYTRGCHSDRSLGHLSVTETELLRDPEGGRQLLRRLESENARLEAALEWRRREQVFWQWMDTVLGASQPTFLPRSPEPGARELEPVARELQALWEQLQEAVEARRAAWEARVGDRGPAWSAARRALDEVVGQDLAALQRAWEPGGGLTQPHGPRRLVRTEAGAPGGPGLRAPEVIEALRTQEAHLEVVLRQLQGHCRQELARLARALPGLIWIPPPGR", "length": 237, "header": "tr|A0A8W4F7V2-1|A0A287ABW1_PIG Computationally mapped isoform of Tubulin epsilon and delta complex 1 OS=Sus scrofa OX=9823 GN=TEDC1 PE=4 SV=2 CANONICAL=A0A287ABW1-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 3522956, "end_pos": 3516436, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093264.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093264.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074859.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074859.1" } ] } } ], 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"R-SSC-3214842", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214842", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "60200", "url": "https://www.rhea-db.org/rhea/60200", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AC28", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AC28-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAMKSKANYVQNPSCSIMIFHPTKEEFNDFDKYIAYIESQGAHRAGLAKVIPPKGWKARQTYEDISDISIAAPLQQEASGKAGVFTQYHRKKKAMTVSEYCHLANSEKYQAPPHLDFEDLEQTYWKTRLYGSPIYGADVSGSLFDENTKQWNLGHLGTIQDLLEQECGVAIDGVNSPYLYFGMWKTGFAWHTEDMDLYSLNFLHFGEPKTWYAVPPAHGRRLERLARELFPGPARGCEAFLRHKVALISPTVLKAQGIPFGRVTQEAGEFMVTFPYGYHSGFNHGFNCAEAINFATPRWVDYGKVASQCSCGEARVVFSMDAFVRILQPERYELWKRGQDRVALEHTEHLSSPGSLELSAWREVRSLRLAPCPRQSFGYLQVPGLARKALLCGRWWYWLHGLYQILQSLFFLPDFFGNLLTPARHPLTDFIHWTR", "length": 436, "header": "tr|A0A287AC28-1|A0A287AC28_PIG Isoform 1 of [histone H3]-trimethyl-L-lysine(9) demethylase OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=A0A287AC28-1" }, "isoforms": [ { "isoform_ac": "A0A287AC28-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28/entry#A0A287AC28-1", "sequence": { "sequence": "MEAMKSKANYVQNPSCSIMIFHPTKEEFNDFDKYIAYIESQGAHRAGLAKVIPPKGWKARQTYEDISDISIAAPLQQEASGKAGVFTQYHRKKKAMTVSEYCHLANSEKYQAPPHLDFEDLEQTYWKTRLYGSPIYGADVSGSLFDENTKQWNLGHLGTIQDLLEQECGVAIDGVNSPYLYFGMWKTGFAWHTEDMDLYSLNFLHFGEPKTWYAVPPAHGRRLERLARELFPGPARGCEAFLRHKVALISPTVLKAQGIPFGRVTQEAGEFMVTFPYGYHSGFNHGFNCAEAINFATPRWVDYGKVASQCSCGEARVVFSMDAFVRILQPERYELWKRGQDRVALEHTEHLSSPGSLELSAWREVRSLRLAPCPRQSFGYLQVPGLARKALLCGRWWYWLHGLYQILQSLFFLPDFFGNLLTPARHPLTDFIHWTR", "length": 436, "header": "tr|A0A287AC28-1|A0A287AC28_PIG Isoform 1 of [histone H3]-trimethyl-L-lysine(9) demethylase OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=A0A287AC28-1" }, "locus": { "chromosome": "9", "start_pos": 27074572, "end_pos": 27072751, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047992.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047992.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041523.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041523.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC28", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3214842", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214842", "resource": "Reactome", "description": "HDMs demethylate histones" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC28", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC28", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC28", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC28", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC28", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC28", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28" } ], "pmid": "" }, { "name": "histone H3K9 demethylase activity", "id": "GO:0032454", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032454", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC28", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28" } ], "pmid": "" }, { "name": "histone H3K9me2/H3K9me3 demethylase activity", "id": "GO:0140684", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140684", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC28", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "60200", "name": "", "equation": "N(6),N(6),N(6)-trimethyl-L-lysyl(9)-[histone H3] + 2 2-oxoglutarate + 2 O2 = N(6)-methyl-L-lysyl(9)-[histone H3] + 2 formaldehyde + 2 succinate + 2 CO2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "60200", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/60200" } ] }, { "id": "R-SSC-4724279", "name": "KDM4A, KDM4B, KDM4C, KDM4D demethylate Me2K10-histone H3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-4724279", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4724279" } ] }, { "id": "R-SSC-5661120", "name": "KDM4A, KDM4B, KDM4C, KDM4D, MINA demethylate Me3K10-histone H3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5661120", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5661120" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AC28-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 436, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AC28-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AC28" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AC28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28" }, { "id": "PS51184", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51184" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "JmjC", "eco_id": "ECO_0000259", "start_pos": 146, "end_pos": 312, "start_aa": "Asp", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AC28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AC28" }, { "id": "PS51183", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51183" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "JmjN", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 60, "start_aa": "Ile", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AC43-1", "uniprot_ac": "A0A287AC43", "uniprot_id": "A0A287AC43_PIG", "mass": { "chemical_mass": 97312.0, "monoisotopic_mass": 97312.0 }, "refseq": { "ac": "XP_020926602", "name": "ral guanine nucleotide dissociation stimulator isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926602" }, "gene_names": [ { "name": "RALGDS", "type": "recommended", "evidence": [ { "id": "A0A287AC43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AC43" } ] }, { "name": "RALGDS", "type": "synonym", "evidence": [ { "id": "XP_020926602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926602" } ] } ], "protein_names": [ { "name": "Ral guanine nucleotide dissociation stimulator", "type": "synonym", "evidence": [ { "id": "A0A287AC43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AC43/entry#names_and_taxonomy" } ] }, { "name": "ral guanine nucleotide dissociation stimulator isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020926602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926602" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AC43", "url": "https://www.uniprot.org/uniprotkb/A0A287AC43" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RALGDS", "url": "https://www.uniprot.org/uniprotkb/A0A287AC43", "locus": { "chromosome": "1", "start_pos": 272776846, "end_pos": 272824184, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005738", "url": "https://www.ensembl.org/id/ENSSSCG00000005738" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005738", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005738", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00155", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00155", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06224", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06224", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17209", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17209", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513970", "url": "https://www.ncbi.nlm.nih.gov/gene/100513970", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000651", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000651", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23113:SF35", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23113:SF35", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00617", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00617", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00618", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00618", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00788", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00788", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-171007", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171007", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5673001", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020926602", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926602", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AC43", "url": "https://www.uniprot.org/uniprotkb/A0A287AC43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AC43-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T244", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T244-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T244-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0WZN3", "url": "https://www.uniprot.org/uniprotkb/A0A8D0WZN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0WZN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0WZN3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVQRMWAEAAGPAGGAEPLFPGSRRSRSVWDAVRLEVGGPDSCPVVLHSFTQLDPDLPRLESSTQEIGEELVNGVVYSISLRKVQVHHGATKGQRWLGCENESALNLYETCKVRTVKAGTLEKLVGHLVPAFQGSDLSYVTVFLCTYRAFTTTQQVLDLLFERYGRCDALTASSRYGCILPYAHEDGGPQDQLKNAISSILGTWLDQYSEDFCQPPDFPCLKQLVAYVQLNMPGSDLERRAHLLLAQLEHAELTQAEPEALKPAPELELAPAPLLAPSPVPAPDLEPVPGPDLEPALAPAPDPEPAPAPAPTPELELALSQSLELEPASAPEPSWPSPVAAEKGLGEEKPHLLAFPAVLVAEQFTLMDAELFKKVVPYHCLGSIWSQRDKKGKEHLAPTVRATVTQFNNVANCVITTCLGDRSVTARGRARVVEHWIQVARECRALKNFSSLYAILSALQSNSIHRLKKTWDEVSRESFRIFQKLSEIFSDENNYSLSRELLIKEGTSKFATLEMNPKRAQKRPKETGVIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQIKLLQSACNNYSIAPEEQFRAWFQAMEWLSETESYNLSCELEPPSESASNTLRVKKNAAIVKRWSDRQAPSTELSASSSCHSKSCDQLRCSPYLSSGDIADALSVHSAGSSSSDVEEINVSFVPESPDGQEKKFWESASQSSPETSGISSASSSTSSSSASTTPVATARTHKRSVSGVCSHGSSLPLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLDEDEPEDYELVQVISEDRKLKIPDNANVFYAMNSTANYDFVLKKRTFTKGAKVRHGASSTLPRMKQKGLKIAKGIF", "length": 884, "header": "tr|A0A287AC43-1|A0A287AC43_PIG Isoform 1 of Ral guanine nucleotide dissociation stimulator OS=Sus scrofa OX=9823 GN=RALGDS PE=4 SV=1 CANONICAL=A0A287AC43-1" }, "isoforms": [ { "isoform_ac": "A0A287AC43-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC43/entry#A0A287AC43-1", "sequence": { "sequence": "MVQRMWAEAAGPAGGAEPLFPGSRRSRSVWDAVRLEVGGPDSCPVVLHSFTQLDPDLPRLESSTQEIGEELVNGVVYSISLRKVQVHHGATKGQRWLGCENESALNLYETCKVRTVKAGTLEKLVGHLVPAFQGSDLSYVTVFLCTYRAFTTTQQVLDLLFERYGRCDALTASSRYGCILPYAHEDGGPQDQLKNAISSILGTWLDQYSEDFCQPPDFPCLKQLVAYVQLNMPGSDLERRAHLLLAQLEHAELTQAEPEALKPAPELELAPAPLLAPSPVPAPDLEPVPGPDLEPALAPAPDPEPAPAPAPTPELELALSQSLELEPASAPEPSWPSPVAAEKGLGEEKPHLLAFPAVLVAEQFTLMDAELFKKVVPYHCLGSIWSQRDKKGKEHLAPTVRATVTQFNNVANCVITTCLGDRSVTARGRARVVEHWIQVARECRALKNFSSLYAILSALQSNSIHRLKKTWDEVSRESFRIFQKLSEIFSDENNYSLSRELLIKEGTSKFATLEMNPKRAQKRPKETGVIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQIKLLQSACNNYSIAPEEQFRAWFQAMEWLSETESYNLSCELEPPSESASNTLRVKKNAAIVKRWSDRQAPSTELSASSSCHSKSCDQLRCSPYLSSGDIADALSVHSAGSSSSDVEEINVSFVPESPDGQEKKFWESASQSSPETSGISSASSSTSSSSASTTPVATARTHKRSVSGVCSHGSSLPLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLDEDEPEDYELVQVISEDRKLKIPDNANVFYAMNSTANYDFVLKKRTFTKGAKVRHGASSTLPRMKQKGLKIAKGIF", "length": 884, "header": "tr|A0A287AC43-1|A0A287AC43_PIG Isoform 1 of Ral guanine nucleotide dissociation stimulator OS=Sus scrofa OX=9823 GN=RALGDS PE=4 SV=1 CANONICAL=A0A287AC43-1" }, "locus": { "chromosome": "1", "start_pos": 272799955, "end_pos": 272777712, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060366.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060366.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041533.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041533.1" } ] } }, { "isoform_ac": "A0A4X1T244-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC43/entry#A0A4X1T244-1", "sequence": { "sequence": "MAREARPAEPRARKGWVFFACVSVVTARRWAVARRAALQSSTPLPTTPLLAPTTESSTQEIGEELVNGVVYSISLRKVQVHHGATKGQRWLGCENESALNLYETCKVRTVKAGTLEKLVGHLVPAFQGSDLSYVTVFLCTYRAFTTTQQVLDLLFERYGRCDALTASSRYGCILPYAHEDGGPQDQLKNAISSILGTWLDQYSEDFCQPPDFPCLKQLVAYVQLNMPGSDLERRAHLLLAQLEHAELTQAEPEALKPAPELELAPAPLLAPSPVPAPDLEPVPGPDLEPALAPAPDPEPAPAPAPTPELELALSQSLELEPASAPEPSWPSPVAAEKGLGEEKPHLLAFPAVLVAEQFTLMDAELFKKVVPYHCLGSIWSQRDKKGKEHLAPTVRATVTQFNNVANCVITTCLGDRSVTARGRARVVEHWIQVARECRALKNFSSLYAILSALQSNSIHRLKKTWDEVSRESFRIFQKLSEIFSDENNYSLSRELLIKEGTSKFATLEMNPKRAQKRPKETGVIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQIKLLQSACNNYSIAPEEQFRAWFQAMEWLSETESYNLSCELEPPSESASNTLRVKKNAAIVKRWSDRQAPSTELSASSSCHSKSCDQLRCSPYLSSGDIADALSVHSAGSSSSDVEEINVSFVPESPDGQEKKFWESASQSSPETSGISSASSSTSSSSASTTPVATARTHKRSVSGVCSHGSSLPLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLDEDEPEDYELVQVISEDRKLKIPDNANVFYAMNSTANYDFVLKKRTFTKGAKVRHGASSTLPRMKQKGLKIAKGIF", "length": 878, "header": "tr|A0A4X1T244-1|A0A4X1T244_PIG Computationally mapped isoform of Ral guanine nucleotide dissociation stimulator OS=Sus scrofa OX=9823 GN=RALGDS PE=4 SV=1 CANONICAL=A0A287AC43-1" }, "locus": { "chromosome": "1", "start_pos": 272807250, "end_pos": 272777712, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063665.2", "url": "https://www.ensembl.org/id/ENSSSCT00000063665.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049932.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049932.2" } ] } }, { "isoform_ac": "A0A8D0WZN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC43/entry#A0A8D0WZN3-1", "sequence": { "sequence": "MMVDCQSSTQEIGEELVNGVVYSISLRKVQVHHGATKGQRWLGCENESALNLYETCKVRTVKAGTLEKLVGHLVPAFQGSDLSYVTVFLCTYRAFTTTQQVLDLLFERYGRCDALTASSRYGCILPYAHEDGGPQDQLKNAISSILGTWLDQYSEDFCQPPDFPCLKQLVAYVQLNMPGSDLERRAHLLLAQLEHAELTQAEPEALKPAPELELAPAPLLAPSPVPAPDLEPVPGPDLEPALAPAPDPEPAPAPAPTPELELALSQSLELEPASAPEPSWPSPVAAEKGLGEEKPHLLAFPAVLVAEQFTLMDAELFKKVVPYHCLGSIWSQRDKKGKEHLAPTVRATVTQFNNVANCVITTCLGDRSVTARGRARVVEHWIQVARECRALKNFSSLYAILSALQSNSIHRLKKTWDEVSRESFRIFQKLSEIFSDENNYSLSRELLIKEGTSKFATLEMNPKRAQKRPKETGVIQGTVPYLGTFLTDLVMLDTAMKDYLYGRLINFEKRRKEFEVIAQIKLLQSACNNYSIAPEEQFRAWFQAMEWLSETESYNLSCELEPPSESASNTLRVKKNAAIVKRWSDRQAPSTELSASSSCHSKSCDQLRCSPYLSSGDIADALSVHSAGSSSSDVEEINVSFVPESPDGQEKKFWESASQSSPETSGISSASSSTSSSSASTTPVATARTHKRSVSGVCSHGSSLPLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLDEDEPEDYELVQVISEDRKLKIPDNANVFYAMNSTANYDFVLKKRTFTKGAKVRHGASSTLPRMKQKGLKIAKGIF", "length": 829, "header": "tr|A0A8D0WZN3-1|A0A287AC43_PIG Computationally mapped isoform of Ral guanine nucleotide dissociation stimulator OS=Sus scrofa OX=9823 GN=RALGDS PE=4 SV=1 CANONICAL=A0A287AC43-1" }, "locus": { "chromosome": "1", "start_pos": 272823754, "end_pos": 272777712, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042593.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042593.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059328.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059328.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 312, "start_aa": "Thr", "end_pos": 312, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr312", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0WZN3", "url": "https://www.uniprot.org/uniprotkb/A0A8D0WZN3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-171007", "name": "", 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"Protein" ] }, { "id": "I3L9W2-1", "url": "https://www.uniprot.org/uniprotkb/I3L9W2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPSTQAKTYLELTLFPSPSRKTGLWIPCPRLNRPALQRWNRGCSRTGGGQLRNNPRRQHAAVVSAGSVYGGLVLKKFLKEIQSILPGFSAKLNWTSDEASYSQDTSGMTSFLMTFEFRFNFSVKVNGILSMENFGAENEPTLNLSNGIALVVNDQHYVSTPKFGTTELLCRRIHPVLGHPVLLVIPDDVAGMGLLGELILTPAAALCPCPKVSSNQPNRISSVSIFLYGPSGLPLILPGQEHLSTAVFKDTSNLIDWKKYHLRMVPNLDLSLDRDLVLPDVSYQVESIEGDQSQNVDPQGQTLLLFLFVDFHSGFPVQQMELWGVHTLLTAHLSAVLVESRSKVHESIQVAVDQALEQHHQAAKAHQKLQASLSVAVNSIMSIMTASTSSNFRKICLQTLQASDTQEFATKLHKSFHEITQHQFLLHCSCEVKQLLPEKNDAEQSREDTHENSGLELLTGTSRQAEIKKLKRGRLRQSLEETRTFYSPGTLSPSEAAPRPVEPTAAPLTPSRSRTGPGSDLEDALWLQEISNLSEWLSPGPAP", "length": 544, "header": "tr|A0A287ACC7-1|A0A287ACC7_PIG Isoform 1 of TOP6B like initiator of meiotic double strand breaks OS=Sus scrofa OX=9823 GN=TOP6BL PE=4 SV=3 CANONICAL=A0A287ACC7-1" }, "isoforms": [ { "isoform_ac": "A0A287ACC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACC7/entry#A0A287ACC7-1", "sequence": { "sequence": "MLPSTQAKTYLELTLFPSPSRKTGLWIPCPRLNRPALQRWNRGCSRTGGGQLRNNPRRQHAAVVSAGSVYGGLVLKKFLKEIQSILPGFSAKLNWTSDEASYSQDTSGMTSFLMTFEFRFNFSVKVNGILSMENFGAENEPTLNLSNGIALVVNDQHYVSTPKFGTTELLCRRIHPVLGHPVLLVIPDDVAGMGLLGELILTPAAALCPCPKVSSNQPNRISSVSIFLYGPSGLPLILPGQEHLSTAVFKDTSNLIDWKKYHLRMVPNLDLSLDRDLVLPDVSYQVESIEGDQSQNVDPQGQTLLLFLFVDFHSGFPVQQMELWGVHTLLTAHLSAVLVESRSKVHESIQVAVDQALEQHHQAAKAHQKLQASLSVAVNSIMSIMTASTSSNFRKICLQTLQASDTQEFATKLHKSFHEITQHQFLLHCSCEVKQLLPEKNDAEQSREDTHENSGLELLTGTSRQAEIKKLKRGRLRQSLEETRTFYSPGTLSPSEAAPRPVEPTAAPLTPSRSRTGPGSDLEDALWLQEISNLSEWLSPGPAP", "length": 544, "header": "tr|A0A287ACC7-1|A0A287ACC7_PIG Isoform 1 of TOP6B like initiator of meiotic double strand breaks OS=Sus scrofa OX=9823 GN=TOP6BL PE=4 SV=3 CANONICAL=A0A287ACC7-1" }, "locus": { "chromosome": "2", "start_pos": 5697769, "end_pos": 5593324, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038402.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038402.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041618.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041618.3" } ] } }, { "isoform_ac": "I3L9W2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACC7/entry#I3L9W2-1", "sequence": { "sequence": "MEGTAVAVCEILKYLIIHWKCETAGVSKGALPEGQLMISIDALNAKYQADTLHCVTTIVSAGSVYGGLVLKKFLKEIQSILPGFSAKLNWTSDEASYSQDTSGMTSFLMTFEFRFNFSVKVNGILSMENFGAENEPTLNLSNGIALVVNDQHYVRPKFGTTELLCRRIHPVLGHPVLLVIPDDVAGMGLLGELILTPAAALCPCPKVSSNQPNRISSVSIFLYGPSGLPLILPGQEHLSTAVFKDTSNLIDWKKYHLRMVPNLDLSLDRDLVLPDVSYQVESIEGDQSQNVDPQGQTLLLFLFVDFHSGFPVQQMELWGVHTLLTAHLSAVLVESRSKVHESIQVAVDQALEQHHQAAKAHQKLQASLSVAVNSIMSIMTASTSSNFRKICLQTLQASDTQEFATKLHKSFHEITQHQFLLHCSCEVKQQLLPEKNDAEQSREDTHENSGLELLTGTSRQAEIKKLKRGRLRQSLEETRTFYSPGTLSPSEAAPRPVEPTAAPLTPSRSRTGPGSDLEDALWLQEISNLSEWLSPGPAP", "length": 539, "header": "tr|I3L9W2-1|A0A287ACC7_PIG Computationally mapped isoform of TOP6B like initiator of meiotic double strand breaks OS=Sus scrofa OX=9823 GN=TOP6BL PE=4 SV=4 CANONICAL=A0A287ACC7-1" }, "locus": { "chromosome": "2", "start_pos": 5683135, "end_pos": 5593324, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026427.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026427.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020826.4", "url": "https://www.ensembl.org/id/ENSSSCP00000020826.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 505, "start_aa": "Thr", "end_pos": 505, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr505", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L9W2", "url": "https://www.uniprot.org/uniprotkb/I3L9W2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "meiotic DNA double-strand break formation", "id": "GO:0042138", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042138", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACC7", "url": "https://www.uniprot.org/uniprotkb/A0A287ACC7" } ], "pmid": "" }, { "name": "reciprocal meiotic recombination", "id": "GO:0007131", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007131", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACC7", "url": "https://www.uniprot.org/uniprotkb/A0A287ACC7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 533, "end_pos": 535, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ACC7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 544, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ACC7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ACC7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 505 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 }, { "start_pos": 144, "end_pos": 146 }, { "start_pos": 533, "end_pos": 535 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF78", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF78-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLVCGRRLLTALLQAQRWTFQPSRDMRLVQFQAPHLTGPHVGLESGNGEGVMNLSAVDPTPPKTVLEFLEQGEAAVSVARRALTAQLPVLPQSEVTILAPVTQPDRVVCVGMNYMDHCRQQNVPVPKEPIIFSKFSEPGESLSEVDWEVELAVIIGKKGKHIKATDTMAHVAGFTVAHDVSACDWQMTCNGKQWLLGKTFDTFFPRALIPEWCFYISDPPNLKICCHGNGEVVQSSSTNQMVFKTEELIAWVSRFVTVCPGDIILTGTPAGVGVFRKPPLFLKKGDEVQCETEELGVIINKVV", "length": 303, "header": "tr|A0A287ACG3-1|A0A287ACG3_PIG Isoform 1 of Fumarylacetoacetase-like C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287ACG3-1" }, "isoforms": [ { "isoform_ac": "A0A287ACG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACG3/entry#A0A287ACG3-1", "sequence": { "sequence": "MLVCGRRLLTALLQAQRWTFQPSRDMRLVQFQAPHLTGPHVGLESGNGEGVMNLSAVDPTPPKTVLEFLEQGEAAVSVARRALTAQLPVLPQSEVTILAPVTQPDRVVCVGMNYMDHCRQQNVPVPKEPIIFSKFSEPGESLSEVDWEVELAVIIGKKGKHIKATDTMAHVAGFTVAHDVSACDWQMTCNGKQWLLGKTFDTFFPRALIPEWCFYISDPPNLKICCHGNGEVVQSSSTNQMVFKTEELIAWVSRFVTVCPGDIILTGTPAGVGVFRKPPLFLKKGDEVQCETEELGVIINKVV", "length": 303, "header": "tr|A0A287ACG3-1|A0A287ACG3_PIG Isoform 1 of Fumarylacetoacetase-like C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287ACG3-1" }, "locus": { "chromosome": "3", "start_pos": 55155403, "end_pos": 55147503, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060705.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060705.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041501.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041501.2" } ] } }, { "isoform_ac": "A0A8W4FF78-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACG3/entry#A0A8W4FF78-1", "sequence": { "sequence": "MLVCGRRLLTALLQAQRWTFQPSRDMRLVQFQAPHLTGPHVGLESGNGEGVMNLSAVDPTPPKTVLEFLEQGEAAVSVARRALTAQLPVLPQSEVTILAPVTQPDRVVCVGMNYMDHCRQQNVPVPKEPIIFSKFSEPGESLSEVDWEVELAVIIGKKGKHIKATDTMAHVAGFTVAHDVSACDWQMTCNGKQWLLGKTFDTFFPRALIPEWCFYISDPPNLKICCHGNGEVVQSSSTNQMVFKTEELIAWVSRFVTVCPGDIILTGTPAGVGVFRKPPLFLKVGWLKEGRHLGHREGL", "length": 299, "header": "tr|A0A8W4FF78-1|A0A287ACG3_PIG Computationally mapped isoform of Fumarylacetoacetase-like C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A287ACG3-1" }, "locus": { "chromosome": "3", "start_pos": 55155403, "end_pos": 55146964, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093037.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093037.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078084.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078084.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 60, "start_aa": "Thr", "end_pos": 60, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr60", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FF78", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF78" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACG3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACG3" } ], "pmid": "" }, { "name": "catalytic activity", "id": "GO:0003824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003824", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACG3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACG3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "small molecule metabolic process", "id": "GO:0044281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044281", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACG3", "url": "https://www.uniprot.org/uniprotkb/A0A287ACG3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ACG3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 303, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ACG3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ACG3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ACG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ACG3" }, { "id": "PF01557", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01557" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fumarylacetoacetase-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 107, "end_pos": 303, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 60 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 53, "end_pos": 55 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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"table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ACJ1-1", "uniprot_ac": "A0A287ACJ1", "uniprot_id": "A0A287ACJ1_PIG", "mass": { "chemical_mass": 55825.0, "monoisotopic_mass": 55825.0 }, "refseq": { "ac": "XP_005669702", "name": "interleukin-17 receptor B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669702" }, "gene_names": [ { "name": "IL17RB", "type": "recommended", "evidence": [ { "id": "A0A287ACJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ACJ1" } ] }, { "name": "IL17RB", "type": "synonym", "evidence": [ { "id": "XP_005669702", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669702" } ] } ], "protein_names": [ { "name": "Interleukin-17 receptor B", "type": "recommended", "evidence": [ { "id": "A0A287ACJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ACJ1/entry#names_and_taxonomy" } ] }, { "name": "IL-17 receptor homolog 1", "type": "synonym", "evidence": [ { "id": "A0A287ACJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ACJ1/entry#names_and_taxonomy" } ] }, { "name": "Interleukin-17B receptor", "type": "synonym", "evidence": [ { "id": "A0A287ACJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ACJ1/entry#names_and_taxonomy" } ] }, { "name": "interleukin-17 receptor B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005669702", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669702" } ] } ], "function": [ { "annotation": "Receptor for the pro-inflammatory cytokines IL17B and IL17E. May play a role in controlling the growth and/or differentiation of hematopoietic cells.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACJ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACJ1#function" }, { "database": "UniProtKB", "id": "ARBA00055270", "url": "https://www.uniprot.org/uniprotkb/ARBA00055270#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ACJ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACJ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IL17RB", "url": "https://www.uniprot.org/uniprotkb/A0A287ACJ1", "locus": { "chromosome": "13", "start_pos": 35963944, "end_pos": 35948340, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037914", "url": "https://www.ensembl.org/id/ENSSSCG00000037914" } ] } } ], "crossref": [ { "id": "ENSSSCG00000037914", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037914", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156014", "url": "https://www.ncbi.nlm.nih.gov/gene/100156014", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038683", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038683", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043046", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043046", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156014", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156014", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HKYMVVY", "url": "https://omabrowser.org/oma/group/HKYMVVY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287ACJ1", "url": "https://www.orthodb.org/?gene=A0A287ACJ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15583", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15583", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15583:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15583:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08357", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08357", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16556", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16556", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16578", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16578", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005669702", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669702", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ACJ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLVLLSLAALCWGAMPPEPTIQCGSEPGLSPEWMVRHALTPGDLRDLRVEPIKSSVAVEDYSILMNISWILRADASIRLLKATKICVTGKSQKQTYSCVRCNYTEAFQTQTRPSGGKWMFSYVGFPVELNTRYFIGAHNIPNANMNEDGPSLAVNFTSPGCLDRIMKYKKKCIEAGSLWDPNITACKKSENTVEVNFTTSPLGNRYMALIQNSTVIGTSYVSEKELTRTSVVVQVTGESEGAVVQLTPYFRTCGNDCIRRRGTVVRCPHTGVPFPQDQSRSMLSGWLPLLLLALLVAIWVLAGGIYLTRRHERIKKTSFSATILLPPIKVLVVYPSEICFHHTVCYFTRFLQNHCRSEVILEKWQKKKIAEMGPVQWLTTQKAAADKVIFLLSNDGNTACDGTCSNSEGGPHENSQDLFPLAFNLFCSDLRSQTHLHKYVVVYFREVDIKDDYSALSVCPTYHLMKDAPAFCKELLHAEQHVSVGRRLQACHYSCSSL", "length": 499, "header": "tr|A0A287ACJ1-1|A0A287ACJ1_PIG Isoform 1 of Interleukin-17 receptor B OS=Sus scrofa OX=9823 GN=IL17RB PE=4 SV=2 CANONICAL=A0A287ACJ1-1" }, "isoforms": [ { "isoform_ac": "A0A287ACJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACJ1/entry#A0A287ACJ1-1", "sequence": { "sequence": "MLLVLLSLAALCWGAMPPEPTIQCGSEPGLSPEWMVRHALTPGDLRDLRVEPIKSSVAVEDYSILMNISWILRADASIRLLKATKICVTGKSQKQTYSCVRCNYTEAFQTQTRPSGGKWMFSYVGFPVELNTRYFIGAHNIPNANMNEDGPSLAVNFTSPGCLDRIMKYKKKCIEAGSLWDPNITACKKSENTVEVNFTTSPLGNRYMALIQNSTVIGTSYVSEKELTRTSVVVQVTGESEGAVVQLTPYFRTCGNDCIRRRGTVVRCPHTGVPFPQDQSRSMLSGWLPLLLLALLVAIWVLAGGIYLTRRHERIKKTSFSATILLPPIKVLVVYPSEICFHHTVCYFTRFLQNHCRSEVILEKWQKKKIAEMGPVQWLTTQKAAADKVIFLLSNDGNTACDGTCSNSEGGPHENSQDLFPLAFNLFCSDLRSQTHLHKYVVVYFREVDIKDDYSALSVCPTYHLMKDAPAFCKELLHAEQHVSVGRRLQACHYSCSSL", "length": 499, "header": "tr|A0A287ACJ1-1|A0A287ACJ1_PIG Isoform 1 of Interleukin-17 receptor B OS=Sus scrofa OX=9823 GN=IL17RB PE=4 SV=2 CANONICAL=A0A287ACJ1-1" }, "locus": { "chromosome": "13", "start_pos": 35962711, "end_pos": 35948369, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049312.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049312.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041531.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041531.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACJ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACJ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156014", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156014", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "M0R8P5-1", "protein_name": "Interleukin-17 receptor B", "gene_name": "Il17rb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLLVLLSLAAMCRSALSREPTIQCGSETGPSPEWMVQHTLTPGDLRDLRVELVKTSVATEEFSILMNISWILRADASIRLLKATKICVSGKNNMHSYSCVRCNYTETFQSQTRPSGGKWIFSYVGFPVELSTLYLIGAHNIPNANMNEDSPSLSVNFTSPGCLNHVMKYKKQCIEAGSLWDPNITACKKNEKTVEVNFTTNSLGNRYMVLIRRDTMLGVSIVLENKLTRTSVVIPVNDESEGALVELTPYLHTCDNDCIRRKGTVVLCSETSAPFPPDDNRSMLRGWLPLLLVLLVATWVLAVGIYLTWRQGRSTKTSFPITAMLLPLVKVLVVYPSEICFHHTVCRFTDFLQNYCRSEVILEKWQKKKIAEMGPVQWLTTQKQAADKVVFLLPSDAPSLCDSACGHKEGSATENSQDLFPLAFNLFCSDFSSQTHLHKYLVVYLGGADLKGDYNALRVCPQYHLMKDAPAFHTELLKATQSMPLKKRPQACHGSCSPL", "length": 499 }, "evidence": [ { "id": "A0A287ACJ1", "url": 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1005, "header": "tr|A0A287ACJ6-1|A0A287ACJ6_PIG Isoform 1 of Pleckstrin homology and RhoGEF domain containing G4B OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287ACJ6-1" }, "isoforms": [ { "isoform_ac": "A0A287ACJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACJ6/entry#A0A287ACJ6-1", "sequence": { "sequence": "MALRAALGRGDRGAGAKELESLDICIQHTLSALYPPFEATAATVLWQLFSVAEKLYRGDGLRCLTDFLIPARRALQHLQQEACARYTGLLFLHEGWPLCIHEKVVVQLASLRGVRLRPGDFYLQITAAGRQSARLVLKCLSRLGRGSEEVAVPEAMYGCVFTGEFLELVNGERNSVPLQNCLLTSGSAVYRTPWSNVTDPIFVPSKGTVLPSCPGPPRPSSVLEAPAPAPAMASPASQGHPVALPHCGGHPGSAQPRSLPSPRGAECESPRTLSGSPNRGPEGISPSEQDPWEPPKGPGGPGGRLDTVDKKDGSQALAFLADGGSPSSRRRLPGTPASLEARRWFRKSYMEALQNPMPLGSSSEESIGDEVCGSRIQGCRTRGPEAATSLAREEPPRPWRAPQQLLSEESGPGAPGGTLPRRSRSWDRTLRGSRDDSRQVPRHSASASPEGLLGGPAMETRPAGSSHPGTAESPSGTSQEADVDAEGSSFGGARPSQHSDVLPEQLCPEGEGRCTGDLLGPVPRQVLEVNQELLQSGVVTLPGTRDRQGRAVVQVCLRGLPWSSEHTSSTELTRLLRYLHTVPRKEVRELGLVILVDARKSLAAPALTQALAALQNTSPPIIHSILLLVDKESAFRPDKDAAIQCELVSSLKALHRLVDSAQLTAALEGSFRYSHGAWISFRRKLEPFTANCEEAIVFLQNSIRSLHAHRTPSTAQEVAELIRKHKAMMRCVLEDVRLVGLRLEGGTVLAWLRREEPGTGCDCRDAIEAASRLYNQVDEEVHRLVLTSNRCLQELEGLQELKVLQEGGDRVSGWTPRRSAPLEHLGPELAAEDLKSCLQEAKRSFPRMSEVVAGGDLWLQTGVHWQEALGEAAPSPGTPPLGRNPLKHEGRPLAPSWTPLGCTGEWAHLLPSLAGQVALCGWEGECLGPGVLAQDPGSTCSSEPMQTPTVHPRKHPTRKVTRKTQSFEIPQLDADHRDSHWLGHTGVFIEGLEVTSAVASEKLPH", "length": 1005, "header": "tr|A0A287ACJ6-1|A0A287ACJ6_PIG Isoform 1 of Pleckstrin homology and RhoGEF domain containing G4B OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287ACJ6-1" }, "locus": { "chromosome": "16", "start_pos": 79934949, "end_pos": 79893858, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048232.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048232.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041536.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041536.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 878, "start_aa": "Thr", "end_pos": 878, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr878", "evidence": [ { "id": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45842:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005659971", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659971", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ACZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP40-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIP7", "url": "https://www.uniprot.org/uniprotkb/F1SIP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIP7-1", "url": "https://www.uniprot.org/uniprotkb/F1SIP7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKFLFYLFFIGIAVKAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPALLTGRYFWSIPEEEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRSLVYDNGTLDILITTVKDTGAFTCIASNPAGEATQTVDLHIIKLPHLLNSTNHIHEPDPGSSDISTSTKSGSNASSSNGDPKMSQDKIVVAEATSSTALLKFNFQRNIPGIRMFQIQYNGTYDDTLVYRMIPPTSKTFLVNNLAAGTMYDLCVLAIYDDGITSLTATRVVGCIQFTTEQDYVRCHFMQSQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVCNNNGQHKVTKVSNVYSQTNGAQIQGCSVTLPQSVSKQAVGHEENTQCCKVANDNVIQSSETCSSQDSSTTTSALPPTWTSSTSVSQKQKRKTGTKPSTEPQSEAVTNVESQNTNRNNSTALQLASRPPDSGTEGPTSKRAHSKPNALPTNVDPIVQETQRPELI", "length": 719, "header": "tr|A0A287ACZ1-1|A0A287ACZ1_PIG Isoform 1 of Leucine-rich repeat and fibronectin type-III domain-containing protein 5 OS=Sus scrofa OX=9823 GN=LRFN5 PE=3 SV=1 CANONICAL=A0A287ACZ1-1" }, "isoforms": [ { "isoform_ac": "A0A287ACZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1/entry#A0A287ACZ1-1", "sequence": { "sequence": "MEKFLFYLFFIGIAVKAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPALLTGRYFWSIPEEEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRSLVYDNGTLDILITTVKDTGAFTCIASNPAGEATQTVDLHIIKLPHLLNSTNHIHEPDPGSSDISTSTKSGSNASSSNGDPKMSQDKIVVAEATSSTALLKFNFQRNIPGIRMFQIQYNGTYDDTLVYRMIPPTSKTFLVNNLAAGTMYDLCVLAIYDDGITSLTATRVVGCIQFTTEQDYVRCHFMQSQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVCNNNGQHKVTKVSNVYSQTNGAQIQGCSVTLPQSVSKQAVGHEENTQCCKVANDNVIQSSETCSSQDSSTTTSALPPTWTSSTSVSQKQKRKTGTKPSTEPQSEAVTNVESQNTNRNNSTALQLASRPPDSGTEGPTSKRAHSKPNALPTNVDPIVQETQRPELI", "length": 719, "header": "tr|A0A287ACZ1-1|A0A287ACZ1_PIG Isoform 1 of Leucine-rich repeat and fibronectin type-III domain-containing protein 5 OS=Sus scrofa OX=9823 GN=LRFN5 PE=3 SV=1 CANONICAL=A0A287ACZ1-1" }, "locus": { "chromosome": "1", "start_pos": 172177307, "end_pos": 172158709, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059729.1", "url": "https://www.ensembl.org/id/ENSSSCT00000059729.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041869.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041869.1" } ] } }, { "isoform_ac": "A0A5G2QP40-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1/entry#A0A5G2QP40-1", "sequence": { "sequence": "MEKFLFYLFFIGIAVKAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPALLTGRYFWSIPEEEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRSLVYDNGTLDILITTVKDTGAFTCIASNPAGEATQTVDLHIIKLPHLLNSTNHIHEPDPGSSDISTSTKSGSNASSSNGDPKMSQDKIVVAEATSSTALLKFNFQRNIPGIRMFQIQYNGTYDDTLVYRCFAD", "length": 466, "header": "tr|A0A5G2QP40-1|A0A287ACZ1_PIG Computationally mapped isoform of Leucine-rich repeat and fibronectin type-III domain-containing protein 5 OS=Sus scrofa OX=9823 GN=LRFN5 PE=3 SV=1 CANONICAL=A0A287ACZ1-1" }, "locus": { "chromosome": "1", "start_pos": 172170644, "end_pos": 172158709, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089412.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089412.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065836.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065836.1" } ] } }, { "isoform_ac": "F1SIP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1/entry#F1SIP7-1", "sequence": { "sequence": "MEKFLFYLFFIGIAVKAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPALLTGRYFWSIPEEEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRSLVYDNGTLDILITTVKDTGAFTCIASNPAGEATQTVDLHIIKLPHLLNSTNHIHEPDPGSSDISTSTKSGSNASSSNGDPKMSQDKIVVAEATSSTALLKFNFQRNIPGIRMFQIQYNGTYDDTLVYRMIPPTSKTFLVNNLAAGTMYDLCVLAIYDDGITSLTATRVVGCIQFTTEQDYVRCHFMQSQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVCNNNGQHKVTKVSNVYSQTNGAQIQGCSVTLPQSVSKQAVGHEENTQCCKVANDNVIQSSETCSSQDSSTTTSALPPTWTSSTSVSQKQKRKTGTKPSTEPQSEAVTNVESQNTNRNNSTALQLASRPPDSGTEGPTSKRAHSKPNALPTNVDPIVQETQIFPKVQTVA", "length": 723, "header": "tr|F1SIP7-1|F1SIP7_PIG Computationally mapped isoform of Leucine-rich repeat and fibronectin type-III domain-containing protein 5 OS=Sus scrofa OX=9823 GN=LRFN5 PE=3 SV=3 CANONICAL=A0A287ACZ1-1" }, "locus": { "chromosome": "1", "start_pos": 172170994, "end_pos": 172158709, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005504.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005504.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005367.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005367.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP40" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156782", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156782", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1N6H4-1", "protein_name": "Leucine-rich repeat and fibronectin type-III domain-containing protein 5", "gene_name": "LRFN5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEKFLFYLFFIGIAVKAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPALLTGRYFWSIPEEEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRSLVYENGTLDILITTVKDTGAFTCIASNPAGEATQTVDLHIIKLPHLLNSTNHIHEPDPGSSDISTSTKSGSNASSSNGDTKMSQDKIVVAEATSSTALLKFNFQRNIPGIRMFQIQYNGTYDDTLVYRMIPPTSKTFLVNNLAAGTMYDLCVLAIYDDGITSLTATRVVGCIQFTTEQDYVRCHFMQSQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVCNNNGQHKVTKVSNVYSQTNGAQIQGCSGTLPQSVSKQAVGHEESAQCCKVANDNVIQPSETCSSQDSSTTTSALPPTWTSSTSVSQKQKRKTGTKPGAEPQSEAVTNVESQNVNRNNSTALQLASRPPDSEGPASKRAHSKPNALPTNVDQIVQETQRPELI", "length": 717 }, "evidence": [ { "id": "A0A287ACZ1", "url": "https://omabrowser.org/oma/group/A0A287ACZ1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A1J9-1", "protein_name": "Leucine-rich repeat and fibronectin type-III domain-containing protein 5", "gene_name": "Lrfn5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEKFLFYLFLIGIAVRAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPALLTGRYFWSIPEEEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRSLVYDNGTLDILITTVKDTGAFTCIASNPAGEATQTMDLHIIKLPHLLNSTNNIHEPDPGSSDISTSTKSGSNASSSNGDTKMSQDKIVVAEASSSTALLKFNFQRNIPGIRMFQIQYNGTYDDTLVYRMIPPTSKTFLVNNLASGTMYDLCVLAIYDDGITSLTATRVVGCIQFTTEQDYVRCHFMQSQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVCNNNGQHKVTKVSNVYSQTNGAQMQGCSVTLPQSMSKQAMGHEENAQCCKVASDSAIQSSETCSSQDSSTTTSALPPTWTSSAPVSQKQKRKTGTKPSAEPQSEAVTNVESQNTNRNNSTALQLASCPPDSVTEGPTSQRAHTKPNALLTNVDQNVQETQRLESI", "length": 719 }, "evidence": [ { "id": "A0A287ACZ1", "url": "https://omabrowser.org/oma/group/A0A287ACZ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1Q9H7-1", "protein_name": "Leucine-rich repeat and fibronectin type-III domain-containing protein 5", "gene_name": "lrfn5a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKLLVCLLVIGMAVKAQICPKRCVCQVLSPNLATLCAKKGLLFVPPNIDRHTVELRLADNFVTSVKRKDLANMTKLVDLTLSRNTISYITPHAFADLENLRALHLDHNRLTRIANDTFSGMSKLHHLILNNNQLTLIHMGAFNDLLALEELDLSYNNLETIPWEAIQRMTSLHTLSLDHNMIEYIPEGTFSLLQKLNRLDVTSNKLQKLPPDPLFQRAQVLATSGIMNPSSFALSFGGNPLHCNCELLWLRRLNREDDLETCATPLHLSGRYFWSIPEEEFLCEPPLITRHSHEMRVLEGQRVALKCKARGDPEPAIHWISPEGKLVSNTSRTLVYNNGTLDILISTVKDTGSFTCISSNPAGEAHQTIELVIIKLPHISNSTNNIQEPDPGSSDISTSTRAGANGGNHTGDTKTSSDKRVVMAEATSSTALIKFNFQRNIPGIRMFQIQYNGTYDDSLVYRMIPPTSKNFLVNNLAAGTQYDLCVLAIYDDGMTSLTATRVVGCVQFTTESEYLRCHFMQSQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVCNSGDAAKGTSVIDVHSQTNGAQGCTVTPSASKQGALSLEEGEGGKKSSAAPLPPPPDSQTHTSETSIPDCSTSTSTVSQSWATPGSSGSLKPKRKPAPKPVPTAEQPKAEVLPNAETQNTNRNNSTALYQPAPLPPPPSRFKDTPILRRARPSTSKYMTLPVEGAWAKRRYSLNENLSKHHCYIGSQKLGNVFCKRSMSMNGMLVQMANSNLDSEKAAFSSSEWILESTV", "length": 786 }, "evidence": [ { "id": "A0A287ACZ1", "url": "https://omabrowser.org/oma/group/A0A287ACZ1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8BXA0-1", "protein_name": "Leucine-rich repeat and fibronectin type-III domain-containing protein 5", "gene_name": "Lrfn5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKFLFYLFLIGIAVRAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPALLTGRYFWSIPEEEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRSLVYDNGTLDILITTVKDTGAFTCIASNPAGEATQTVDLHIIKLPHLLNSTNHIHEPDPGSSDISTSTKSGSNASSSNGDTKMSQDKIVVAEATSSTALLKFNFQRNIPGIRMFQIQYNGTYDDTLVYRMIPPTSKTFLVNNLASGTMYDLCVLAIYDDGITSLTATRVVGCIQFTTEQDYVRCHFMQSQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVCNNNGQHKVTKVSNVYSQTNGAQMQGCSVTLPQSMSKQAMGHEENAQCCKVASDNAIQSSETCSSQDSSTTTSALPPTWTSSAPVSQKQKRKTGTKPSAEPQSEAVTNVESQNTNRNNSTALQLASCPPDSVTEGPTSQRAHTKPNALLTNVDQNVQETQRLESI", "length": 719 }, "evidence": [ { "id": "A0A287ACZ1", "url": "https://omabrowser.org/oma/group/A0A287ACZ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96NI6-1", "protein_name": "Leucine-rich repeat and fibronectin type-III domain-containing protein 5", "gene_name": "LRFN5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEKILFYLFLIGIAVKAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPPLLTGRYFWSIPEEEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRSLVYDNGTLDILITTVKDTGAFTCIASNPAGEATQIVDLHIIKLPHLLNSTNHIHEPDPGSSDISTSTKSGSNTSSSNGDTKLSQDKIVVAEATSSTALLKFNFQRNIPGIRMFQIQYNGTYDDTLVYRMIPPTSKTFLVNNLAAGTMYDLCVLAIYDDGITSLTATRVVGCIQFTTEQDYVRCHFMQSQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVCNNNGQHKVTKVSNVYSQTNGAQIQGCSVTLPQSVSKQAVGHEENAQCCKATSDNVIQSSETCSSQDSSTTTSALPPSWTSSTSVSQKQKRKTGTKPSTEPQNEAVTNVESQNTNRNNSTALQLASRPPDSVTEGPTSKRAHIKPNALLTNVDQIVQETQRLELI", "length": 719 }, "evidence": [ { "id": "A0A287ACZ1", "url": "https://omabrowser.org/oma/group/A0A287ACZ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1" } ], "pmid": "" }, { "name": "GABA-ergic synapse", "id": "GO:0098982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098982", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1" } ], "pmid": "" }, { "name": "postsynaptic density membrane", "id": "GO:0098839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098839", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "synaptic membrane adhesion", "id": "GO:0099560", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099560", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1" } ], "pmid": "" }, { "name": "regulation of presynapse assembly", "id": "GO:1905606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905606", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1" } ], "pmid": "" }, { "name": "negative regulation of inflammatory response", "id": "GO:0050728", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050728", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1" } ], "pmid": "" }, { "name": "negative regulation of macrophage activation", "id": "GO:0043031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043031", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACZ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 330, "end_pos": 332, "annotation": "n_glycosylation_sequon" }, { "start_pos": 339, "end_pos": 341, "annotation": "n_glycosylation_sequon" }, { "start_pos": 382, "end_pos": 384, "annotation": "n_glycosylation_sequon" }, { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" }, { "start_pos": 452, "end_pos": 454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 671, "end_pos": 673, "annotation": "n_glycosylation_sequon" }, { "start_pos": 672, "end_pos": 674, "annotation": "n_glycosylation_sequon" }, { "start_pos": 73, "end_pos": 75, "annotation": 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"https://www.genome.jp/dbget-bin/www_bget?ssc:100520441", "resource": "KEGG Pathway" }, { "id": "R-SSC-5223345", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5223345", "resource": "Reactome", "description": "Miscellaneous transport and binding events" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K4T6-1", "protein_name": "NIPA-like domain containing 1", "gene_name": "Nipal1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAQLRLPPGEPCREGYVLSLVCSNSSQALCEITNVSQPLAYPVLYTNPNSSTSNFSISAGVENKYSLYVGLVLAISSSFFIGSSFILKKKGLLQLADKGITRAGQGGHSYLKEWLWWAGLLSMGAGEAANFAAYAFAPATLVTPLGALSVLISAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAPQEGEVTSLHEMEMKLRDPGFISFAVIVSVISLVLILVVAPRKGQTNILVYISICSLIGAFSVSSVKGLGIAIKELLERKPVYKDPLVFILLAVLTLSVTTQINYLNKALDTFNTSLVTPIYYVFFTSMVVTCSAILFQEWYGMRAGDIIGTLSGFFTIINGIFLLHAFKNTNITWSELTSTAKKEVLSSNGSQNSYVLLENADCSTSGCDDDITLFSRTGDQSIHKL", "length": 416 }, "evidence": [ { "id": "A0A287AD64", "url": "https://omabrowser.org/oma/group/A0A287AD64/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A3Q1MF03-1", "protein_name": "NIPA like domain containing 1", "gene_name": "NIPAL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGGQVRLPPGEPCREGYVLSLSCPNTSQAWCEITRVSQLLASPVLYRDLNSSITNLSVSTNTENKYNLYIGLVLAISSSIFIGSSFILKKKGLLQLAKKGVTRAVGAGEAVNFAAYAFAPATLVTSLGALSVLVSAILSSYFLNERLNIHGKIGCILSILGSTVMVIHAPQEEKVATLHEMEMKLRDPGFICFAVIITVISLVLILIVAPKKGQTNILVYISICSLIGAFSVSSVKGLGIAIKELLEWKPVYKHPLVFVLLAVLVLSVATQINYLNKALDTFNTSLVTPIYYVLFTSMVVTCSAILFQEWYGMNAGDVIGTLSGFFTIINGIFLLHAFKNIDITWSDLTSTTQKEVLSANGSEDKYVLLENTDCSVPGFDDDITLYSRTGQNP", "length": 393 }, "evidence": [ { "id": "A0A287AD64", "url": "https://omabrowser.org/oma/group/A0A287AD64/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "M9PD12-1", "protein_name": "Spichthyin, isoform B", "gene_name": "spict", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNSDGEASSLQMPQVTVGGMLPVEANQSPETAPLSMAETVSNTDFYIGVGLAISSCFFIGSSFIIKKKALIRLSRYGEVRASAGGFGYLREWIWWAGLLTMGVGEAANFAAYAFAPASLVTPLGALSVIISAVMASRFLNEKLNLLGKIGCFLCILGSTIIVIHSPKEKEIEDLQLLFDMLLDPVFILYVICIVGSTVFVACFIAPRHGHTNVVVYIFLCSGIGSLTVMSCKALGLAIRQTLNNGGNVFLTWMPWFLILVTVTFIAIQMNYLNKALDIFNTSIVTPVYYVMFTTLVIAASAILFKEFTHMRFDDILGDVCGFLIVITAVFLLNAFRDIDISLNDVRGLMRPKMQRVSQFDEEVLVTSNTKERRLSYGSSDIFRKAXHKQRYQV", "length": 393 }, "evidence": [ { "id": "A0A287AD64", "url": "https://omabrowser.org/oma/group/A0A287AD64/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q6NVV3-1", "protein_name": "Magnesium transporter NIPA3", "gene_name": "NIPAL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGAQVRLPPGEPCREGYVLSLVCPNSSQAWCEITNVSQLLASPVLYTDLNYSINNLSISANVENKYSLYVGLVLAVSSSIFIGSSFILKKKGLLQLASKGFTRAGQGGHSYLKEWLWWVGLLSMGAGEAANFAAYAFAPATLVTPLGALSVLISAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAPQEEEVTSLHEMEMKLRDPGFISFAVIITVISLVLILIVAPKKGQTNILVYISICSLIGAFSVSSVKGLGIAIKELIEWKPVYKHPLVFVLLAVLVLSVTTQINYLNKALDTFNTSLVTPIYYVFFTSMVVTCSAILFQEWYGMTAGDIIGTLSGFFTIIIGIFLLHAFKNTDITWSELTSTAKKEAVSLNVNENNYVLLENLECSAPGYNDDVTLFSRTDD", "length": 410 }, "evidence": [ { "id": "A0A287AD64", "url": "https://omabrowser.org/oma/group/A0A287AD64/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BMW7-1", "protein_name": "Magnesium transporter NIPA3", "gene_name": "Nipal1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVQLRLPPGEPCHEGYVLSLVCSNSSRASCEITNVSESLPYPVVYTNLNSSKTNFSISASVENKYNLYVGLVLAISSSVFIGSSFILKKKGLLQLADKGITRAGQGGHSYLKEWLWWAGLLSMGAGEAANFAAYAFAPATLVTPLGALSVLISAILSSYFLNERLNIHGKIGCILSVLGSTVMVIHAPQEGEVTSLHEMEMKLRDPGFVSFAVIISVISLVLILIVAPKKGQTNILVYIAICSLIGAFSVSSVKGLGIAIKELLERKPVYKDPLFFILLTMLALSVTTQINYLNKALDTFNTSLVTPIYYVFFTSMVVTCSAILFQEWYGMKAGDIIGTLSGFFTIINGIFLLHAFKNTNITWSELMSTAKKEALSPNGNQNSYVLLENADFSASGYDDDITLFSRTNDQSSHKL", "length": 416 }, "evidence": [ { "id": "A0A287AD64", "url": "https://omabrowser.org/oma/group/A0A287AD64/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "magnesium ion transport", "id": "GO:0015693", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015693", "evidence": [ { "database": "UniProtKB", "id": "A0A287AD64", "url": "https://www.uniprot.org/uniprotkb/A0A287AD64" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AD64", "url": "https://www.uniprot.org/uniprotkb/A0A287AD64" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "magnesium ion transmembrane transporter activity", "id": "GO:0015095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015095", "evidence": [ { "database": "UniProtKB", "id": "A0A287AD64", "url": "https://www.uniprot.org/uniprotkb/A0A287AD64" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" }, { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 25, "end_pos": 27 }, { "start_pos": 302, "end_pos": 304 }, { "start_pos": 50, "end_pos": 52 }, { "start_pos": 55, "end_pos": 57 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AD84-1", "uniprot_ac": "A0A287AD84", "uniprot_id": "A0A287AD84_PIG", "mass": { "chemical_mass": 64683.0, "monoisotopic_mass": 64683.0 }, "refseq": { "ac": "XP_020950233", "name": "F-box only protein 46", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950233" }, "gene_names": [ { "name": "FBXO46", "type": "recommended", "evidence": [ { "id": "A0A287AD84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AD84" } ] }, { "name": "FBXO46", "type": "synonym", "evidence": [ { "id": "XP_020950233", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950233" } ] } ], "protein_names": [ { "name": "F-box only protein 46", "type": "synonym", "evidence": [ { "id": "XP_020950233", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950233" } ] }, { "name": "F-box protein 46", "type": "synonym", "evidence": [ { "id": "A0A287AD84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AD84/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AD84", "url": "https://www.uniprot.org/uniprotkb/A0A287AD84" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBXO46", "url": "https://www.uniprot.org/uniprotkb/A0A287AD84", "locus": { "chromosome": "6", "start_pos": 52053281, "end_pos": 52069166, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038367", "url": "https://www.ensembl.org/id/ENSSSCG00000038367" } ] } } ], "crossref": [ { "id": "A0A287AD84", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AD84", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038367", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038367", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22177", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22177", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102158327", "url": "https://www.ncbi.nlm.nih.gov/gene/102158327", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102158327", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102158327", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CHYFKSI", "url": "https://omabrowser.org/oma/group/CHYFKSI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AD84", "url": "https://www.orthodb.org/?gene=A0A287AD84", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16271:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16271:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020950233", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950233", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AD84", "url": "https://www.uniprot.org/uniprotkb/A0A287AD84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AD84-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD84-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRGGLLPFQLWCPRPFGTYSQNQPRPPSAALKPAACSEPGSGAEPDHGPAHSENTPPALAAEAPASQPAPLLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLEPTKAPPDPGGQDGPPPAEGAPASASEDVDLLSVAEMVALVEQRAALALQNYSRPSAPAPVVFVSAEQGGPAKGLGSERRSGGGDCSRVAEAVAHFEAQRDSPPSKGLRKEERPGPGPGEVRIAFRISNGREPRAPDGGLPNGSGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGESPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQPRGPDGPPEPPPADAPAAAPGPDDAEGTTDTSLCRLYRHVSHDFLEIRFKIQRLLEPRQYMLLLPEHVLVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWSRDPLYRDDPCKQCRKRYEKGDVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGLHDNNWVLPCNGPGGGGGARAGREEGR", "length": 606, "header": "tr|A0A287AD84-1|A0A287AD84_PIG Isoform 1 of F-box protein 46 OS=Sus scrofa OX=9823 GN=FBXO46 PE=4 SV=1 CANONICAL=A0A287AD84-1" }, "isoforms": [ { "isoform_ac": "A0A287AD84-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD84/entry#A0A287AD84-1", "sequence": { "sequence": "MDRGGLLPFQLWCPRPFGTYSQNQPRPPSAALKPAACSEPGSGAEPDHGPAHSENTPPALAAEAPASQPAPLLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLEPTKAPPDPGGQDGPPPAEGAPASASEDVDLLSVAEMVALVEQRAALALQNYSRPSAPAPVVFVSAEQGGPAKGLGSERRSGGGDCSRVAEAVAHFEAQRDSPPSKGLRKEERPGPGPGEVRIAFRISNGREPRAPDGGLPNGSGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGESPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQPRGPDGPPEPPPADAPAAAPGPDDAEGTTDTSLCRLYRHVSHDFLEIRFKIQRLLEPRQYMLLLPEHVLVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWSRDPLYRDDPCKQCRKRYEKGDVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGLHDNNWVLPCNGPGGGGGARAGREEGR", "length": 606, "header": "tr|A0A287AD84-1|A0A287AD84_PIG Isoform 1 of F-box protein 46 OS=Sus scrofa OX=9823 GN=FBXO46 PE=4 SV=1 CANONICAL=A0A287AD84-1" }, "locus": { "chromosome": "6", "start_pos": 52056181, "end_pos": 52054364, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047019.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047019.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041933.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041933.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AD84", "url": "https://www.uniprot.org/uniprotkb/A0A287AD84" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102158327", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102158327", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TS88-1", "protein_name": "F-box protein 46", "gene_name": "FBXO46", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDRGGLLPFQLWCPRPFGTYSQNQPRPPSATLKPSACSEPGGGAEPEHGPAHSENTPPVLASDAPASQPAPLLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLESTKAPPDPGGQDGPPAAEGAPTSAGEDVDLLSVAEMVALVEQRAALALQSYPRPSTPAPVVFVSAEQGGPGKGLGSERRSGGGDCSRVAEAVAHFEAQRDNPPAKGLRKEERPGPGPGEVRIAFRISNGRESRAPDGSLPNGSGGRPSCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGETPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDECIFFGKDSTKNVKEETVCLTVSPEEPPPPGQLFFLQSRGQDGPPEPPPADSPATAPGPDDAEGTADTSLCRLYRHVSHDFLEIRFKIQRLLEPRQYMLVLPEHVLVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWSRDPLYRDDPCKQCRKRYEKGDVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGLHDNNWVLPCNGPGAGGGRAGREEGR", "length": 605 }, "evidence": [ { "id": "A0A287AD84", "url": "https://omabrowser.org/oma/group/A0A287AD84/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q1L8N6-1", "protein_name": "F-box only protein 46", "gene_name": "fbxo46", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNRDTFSHIRLWCPRPFGTYSQNKPYSNGTVLNGTTTTHCKADDSGLTAIETHGVSEEQEEDVGTENTPPAASSTLLAPPLPASPSPNSQMEDGRVLLDTWYVIKPGNTKEKIAFFVAHQCNGAGIPRPSAMKVKGNWATDCTKAKRRRRCSSYDPPTKAQNVTVDVPAEPNLTDDGVVVSETDLLSVAEMVALVEQRTALALQGMVAQGQTSPYTVHQKPVVILSEPPSSTPASQSDFDLLQQQQESRRVAQTVAQFESRQQNLDSTTLRPELNGSGRDCIQTGESGTPSHGRGEVRIAFRVSSLDPRTQSEPVGRPKCMFMSCGVGGGQAAARGKEKITCDLYQLVSPSSRDPGALLAGSPKADPLGEGITDRPPSTTPDPNQDPASGEKATVARERVTGFHVEVVVTGAVDQCVFYGKDSTENVQEETVCFAMPNGAKSTDASEDPPPGQLFFLQSAATEDENCSAVNGGMRSLDCANNNGPLGATIERPDSPLATVDDCSDPPLCRLYRHVSHDFLEIRFQIQRLLEPRQYMLSLPDHIMVNIFSYLPTHSLAALKCTCHDFKTLIETYGVRATDSRWNQDPLYRDDPCKQCKRQYERGDVSLCRWHPKPYHHDLPYGRSYWMCCRRTDKDTPGCRVGLHDNNWVQPCELVQARKRDDAR", "length": 664 }, "evidence": [ { "id": "A0A287AD84", "url": "https://omabrowser.org/oma/group/A0A287AD84/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q4KLY2-1", "protein_name": "F-box only protein 46", "gene_name": "Fbxo46", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDRGSLLPFQLWCPRPFSKYSQNQPRPPSATLKPPVCPDTSSGTEPDHRPAHLESTPPALAAEAPTSQHAPLLSTAASGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLEPTKAPPDQGGQEGTPATEVAPTSSGDDVDLLSVAEMVALVEQRAALALQSYPRPSTPAPVVFVSAEQGGPAKGLGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFRISNVREPQSPDGSLANGGGGRPACPYPGSPGPGTRAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGETPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDACIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQSRGPEGPPEPPPADTASKVPGPEDSEGTTDTSLCRLYRHVSHDFLEIRFKIQRLLEPRQYMLLLPEHVLVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWSRDPLYRDDPCKQCRKRYEKGDVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGLHDNNWVLPCNGVGGGRAGREEGR", "length": 603 }, "evidence": [ { "id": "A0A287AD84", "url": "https://omabrowser.org/oma/group/A0A287AD84/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6PJ61-1", "protein_name": "F-box only protein 46", "gene_name": "FBXO46", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDRGSLLPFQLWCPRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPSGGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPPEPPPADSPATAPGPDDAEGTADTSLCRLYRHVSHDFLEIRFKIQRLLEPRQYMLLLPEHVLVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWSRDPLYRDDPCKQCRKRYEKGDVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGLHDNNWVLPCNGPGGGRAGREEGR", "length": 603 }, "evidence": [ { "id": "A0A287AD84", "url": "https://omabrowser.org/oma/group/A0A287AD84/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BG80-1", "protein_name": "F-box only protein 46", "gene_name": "Fbxo46", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDRGSLLPFQLWCPRPFSKYSQNQPRPPSTALKPPVCPDTSSGTEPDHRPAHLESTPPAVAAEAPTSQPAPLLSTAASGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGSSRASSMKVKGHWGSDSSKAKRRRRCLEPTKAPPDQGGREGTPATEVTPTSSGDDVDLVSVAEMVALVEQRAALALQSYPRPSTPAPVVFVSADQGGPAKGLGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFRISNVREPHSPDGNLPNGGGGRPGCAYPGSPGPGTRAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGETPAPTRPEDTPPAPPPPPARDCGASGFHVDVVVTGVVDACIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQSRGPEGPPEPPPADIPSTVPGPDDSEGTTDTSLCRLYRHVSHDFLEIRFKIQRLLEPRQYMLLLPEHVLVKIFSFLPTRALAALKCTCHHFKGIIEAFGVRATDSRWSRDPLYRDDPCKQCRKRYEKGDVSLCRWHPKPYHHDLPYGRSYWMCCRRADRETPGCRLGLHDNNWVLPCNGVGGGRAGREEGR", "length": 603 }, "evidence": [ { "id": "A0A287AD84", "url": "https://omabrowser.org/oma/group/A0A287AD84/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "SCF ubiquitin ligase complex", "id": "GO:0019005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019005", 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF00641", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17219", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17219", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8939243", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939243", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8953750", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8953750", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020948203", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948203", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ADA2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADA2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, 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} }, { "isoform_ac": "A0A5G2R0B2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADA2/entry#A0A5G2R0B2-1", "sequence": { "sequence": "MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRSTFFEVIVNASRTKGPLKFPISGRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVDKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH", "length": 204, "header": "tr|A0A5G2R0B2-1|A0A5G2R0B2_PIG Computationally mapped isoform of YY1 associated factor 2 OS=Sus scrofa OX=9823 GN=YAF2 PE=4 SV=1 CANONICAL=A0A287ADA2-1" }, "locus": { "chromosome": "5", "start_pos": 73497086, "end_pos": 73418793, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069371.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069371.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070589.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070589.1" } ] } }, { "isoform_ac": "A0A5G2R6U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADA2/entry#A0A5G2R6U1-1", "sequence": { "sequence": "MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVDKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH", "length": 138, "header": "tr|A0A5G2R6U1-1|A0A287ADA2_PIG Computationally mapped isoform of YY1 associated factor 2 OS=Sus scrofa OX=9823 GN=YAF2 PE=4 SV=1 CANONICAL=A0A287ADA2-1" }, "locus": { "chromosome": "5", "start_pos": 73497086, "end_pos": 73418793, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077279.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077279.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069847.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069847.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R6U1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6U1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110260764", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260764", "resource": "KEGG Pathway" }, { "id": "R-SSC-8939243", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939243", "resource": "Reactome", "description": "RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known" }, { "id": "R-SSC-8953750", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8953750", "resource": "Reactome", "description": "Transcriptional Regulation by E2F6" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5SP48-1", "protein_name": "YY1-associated factor 2 isoform X1", "gene_name": "yaf2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADWLFYQPKVPKRQAKPSSDDGYWDCSVCTFKNTAEAFKCMMCDVRKGTSTRKPRPVSQLVSQQVTQQFASATLPKKEKKEKTEKDKNEREPTLKKNNHKKMRPRLKNVDRSSAQHLEVTVGDLTVIITDYKEKTKPSSSSSSSATSADHHSQSGSNSDNTEKGISRSSSPRGEVSSLNGESH", "length": 184 }, "evidence": [ { "id": "A0A287ADA2", "url": "https://omabrowser.org/oma/group/A0A287ADA2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8IY57-1", "protein_name": "YY1-associated factor 2", "gene_name": "YAF2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH", "length": 180 }, "evidence": [ { "id": "A0A287ADA2", "url": "https://omabrowser.org/oma/group/A0A287ADA2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99LW6-1", "protein_name": "YY1-associated factor 2", "gene_name": "Yaf2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGDKKSPTRPKRQPKPASDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDRVEKDKSEKEAASKKNCHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKAKSAPASSAAGDQHSQGSCSSDSTERGVSRSSSPRGEASSLNGESH", "length": 179 }, "evidence": [ { "id": "A0A287ADA2", "url": "https://omabrowser.org/oma/group/A0A287ADA2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ADC2-1", "uniprot_ac": "A0A287ADC2", "uniprot_id": "A0A287ADC2_PIG", "mass": { "chemical_mass": 70537.0, "monoisotopic_mass": 70537.0 }, "refseq": { "ac": "XP_003131794", "name": "U3 small nucleolar RNA-associated protein 6 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131794" }, "gene_names": [ { "name": "UTP6", "type": "recommended", "evidence": [ { "id": "A0A287ADC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2" } ] }, { "name": "UTP6", "type": "synonym", "evidence": [ { "id": "XP_003131794", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131794" } ] } ], "protein_names": [ { "name": "U3 small nucleolar RNA-associated protein 6 homolog", "type": "recommended", "evidence": [ { "id": "A0A287ADC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2/entry#names_and_taxonomy" } ] }, { "name": "Multiple hat domains protein", "type": "synonym", "evidence": [ { "id": "A0A287ADC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2/entry#names_and_taxonomy" } ] }, { "name": "U3 small nucleolar RNA-associated protein 6 homolog", "type": 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During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome. Involved in nucleolar processing of pre-18S ribosomal RNA.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADC2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2#function" }, { "database": "UniProtKB", "id": "ARBA00058527", "url": "https://www.uniprot.org/uniprotkb/ARBA00058527#function" }, { "database": "UniProtKB", "id": "F1RJ62", "url": "https://www.uniprot.org/uniprotkb/F1RJ62#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ADC2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UTP6", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2", "locus": { "chromosome": "12", "start_pos": 43089205, "end_pos": 43032915, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017745", "url": "https://www.ensembl.org/id/ENSSSCG00000017745" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017745", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017745", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524172", "url": "https://www.ncbi.nlm.nih.gov/gene/100524172", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003107", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003107", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013949", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013949", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524172", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524172", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CKQWNAK", "url": "https://omabrowser.org/oma/group/CKQWNAK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287ADC2", "url": "https://www.orthodb.org/?gene=A0A287ADC2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23271:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23271:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24892", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24892", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003131794", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131794", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ADC2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ62", "url": "https://www.uniprot.org/uniprotkb/F1RJ62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ62-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ62-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEIIQERIEDRLPELEQLERIGLFSRAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQYEINLLELIQRRRAHIGYSFKKDEIENSIVHRVQGVFRRASAKWKDDVQLWLSYVVFCKKWATKAQLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYQEYFRMELMHAEKLRKEKQEFETAKMDVENLEYSEEILKGELARIIYKNSVSIIKGAEFHVSLLSIAQLFDFAKDLQREIYDDLQALHTDDPLTWDYVARRELEMESQPGDEPPTTKQAKVAEATRREERCCAVYEEAVKTLPTEAMWKCYLNFCMERFTKKTNSQLLREKRLERTMVAFRKAHELRLLPEVQYKQWSELLLQHNLFKEALEVAGAGTELFQDSVMMWQVKLQVLIASESPDVAMVFEEAFVRLKPQICLPLWISWAEWSEGAKSQEDTEAIFKKAVLAVMGADSVTLKDKYLDWAYRSSGYKKARAVFKSLQESRPFSVDFFRKMIQFEKEQESCKMANLREYYERALREFGSVDSDLWMDYIKEELDHPLGRPENCGQIYWRAMKMLQGEAAELFVAKHAMHQAGHL", "length": 598, "header": "tr|A0A287ADC2-1|A0A287ADC2_PIG Isoform 1 of U3 small nucleolar RNA-associated protein 6 homolog OS=Sus scrofa OX=9823 GN=UTP6 PE=3 SV=1 CANONICAL=A0A287ADC2-1" }, "isoforms": [ { "isoform_ac": "A0A287ADC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2/entry#A0A287ADC2-1", "sequence": { "sequence": "MAEIIQERIEDRLPELEQLERIGLFSRAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQYEINLLELIQRRRAHIGYSFKKDEIENSIVHRVQGVFRRASAKWKDDVQLWLSYVVFCKKWATKAQLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYQEYFRMELMHAEKLRKEKQEFETAKMDVENLEYSEEILKGELARIIYKNSVSIIKGAEFHVSLLSIAQLFDFAKDLQREIYDDLQALHTDDPLTWDYVARRELEMESQPGDEPPTTKQAKVAEATRREERCCAVYEEAVKTLPTEAMWKCYLNFCMERFTKKTNSQLLREKRLERTMVAFRKAHELRLLPEVQYKQWSELLLQHNLFKEALEVAGAGTELFQDSVMMWQVKLQVLIASESPDVAMVFEEAFVRLKPQICLPLWISWAEWSEGAKSQEDTEAIFKKAVLAVMGADSVTLKDKYLDWAYRSSGYKKARAVFKSLQESRPFSVDFFRKMIQFEKEQESCKMANLREYYERALREFGSVDSDLWMDYIKEELDHPLGRPENCGQIYWRAMKMLQGEAAELFVAKHAMHQAGHL", "length": 598, "header": "tr|A0A287ADC2-1|A0A287ADC2_PIG Isoform 1 of U3 small nucleolar RNA-associated protein 6 homolog OS=Sus scrofa OX=9823 GN=UTP6 PE=3 SV=1 CANONICAL=A0A287ADC2-1" }, "locus": { "chromosome": "12", "start_pos": 43087786, "end_pos": 43061716, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059694.2", "url": "https://www.ensembl.org/id/ENSSSCT00000059694.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039320.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039320.1" } ] } }, { "isoform_ac": "F1RJ62-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2/entry#F1RJ62-1", "sequence": { "sequence": "MESGTQGIQAIIKKASDLEYKIQRRTLFKEDFINYVQYEINLLELIQRRRAHIGYSFKKDEIENSIVHRVQGVFRRASAKWKDDVQLWLSYVVFCKKWATKAQLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYQEYFRMELMHAEKLRKEKQEFETAKMDVENLEYSEEILKGELARIIYKNSVSIIKGAEFHVSLLSIAQLFDFAKDLQREIYDDLQALHTDDPLTWDYVARRELEMESQPGDEPPTTKQAKVAEATRREERCCAVYEEAVKTLPTEAMWKCYLNFCMERFTKKTNSQLLREKRLERTMVAFRKAHELRLLPEVQYKQWSELLLQHNLFKEALEVAGAGTELFQDSVMMWQVKLQVLIASESPDVAMVFEEAFVRLKPQICLPLWISWAEWSEGAKSQEDTEAIFKKAVLAVMGADSVTLKDKYLDWAYRSSGYKKARAVFKSLQESRPFSVDFFRKMIQFEKEQESCKMANLREYYERALREFGSVDSDLWMDYIKEELDHPLGRPENCGQIYWRAMKMLQGEAAELFVAKHAMHQAGHL", "length": 576, "header": "tr|F1RJ62-1|A0A287ADC2_PIG Computationally mapped isoform of U3 small nucleolar RNA-associated protein 6 homolog OS=Sus scrofa OX=9823 GN=UTP6 PE=3 SV=4 CANONICAL=A0A287ADC2-1" }, "locus": { "chromosome": "12", "start_pos": 43087784, "end_pos": 43047561, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019313.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019313.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018800.5", "url": "https://www.ensembl.org/id/ENSSSCP00000018800.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJ62", "url": "https://www.uniprot.org/uniprotkb/F1RJ62" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524172", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524172", "resource": "KEGG Pathway" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [ { "uniprot_canonical_ac": "F1M805-1", "protein_name": "UTP6 small subunit processome component", "gene_name": "Utp6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEIIQERIEDRIPELEQLERIGLFSRAEIKAIIKKASDLEYKIHRRNLHKEDFISYVQYEINLLELIQRRRARIKYSFKKDEIEYSMVHRVQGIFGRASAKWKDDVQLWLSYIVFCKKWGTKAHLSKIFSNMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYQEYFRMELMHAEKLRKEKQEFEKAAMDMGDFDHPEEILKGELARIVYKSAVSKIKGAEFHVSLLAISQLFDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQPGEEQPVSKQAKAVEMGRREERCCAVYEEAVRTLPTEAMWKCYITFCLERFSKKTSSVSLRGQRLERTMRAFRKAHELKLLSEVQYKQWIDLLLRQDLFKEALQVAEAGTELFKDSVTMWQTKLLVLIDSKSPDVGVHFEEAFAHLKPQVCLSLWISWAEWSESVESQEDTEAIFKRALLAVTGANSITLKEKYLDWAYRSGGYKKARAVFKSLQESRPFSVEFFRKMMQFEKEQDSSKMVNLREYYERALREFGSTDSDLWLDYMNEELNHPFGKPENCGQIYWRAMRMLQGQSASMFVAKHAMHQAGH", "length": 597 }, "evidence": [ { "id": "A0A287ADC2", "url": "https://omabrowser.org/oma/group/A0A287ADC2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54WN5-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "utp6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDRVNFSIDQLLEETSKLVSLGIISKQECKDIMKKREYHEIKIFNRNSHKSDFLTYIKYELELDRLFHKRGKAKNIEFDYRLRSALRHAIILFGSATKKFPKDEALWINALNIRMKRASKEGTGRLFSIALSNLPRSAKLWKLAATFEFEVNKNIQNARNLIQAGIQFNKTDKSLWHYFFLMELTYISLLFSDITFIDKKIEEEEEEAIKLNLDSLRKSEKIEKDEFITFGKEILSADKLKQSSLIRGQIAQIVFRKAIKSSIGQDFDFRKHFYKIASKFLDIGKDSENPMGAGELLQKEILESLVTDFPNDDKTYIFLASIEQSKSSEPSLLKRLNNSTKILNQGLTIIKSESYLFNYIHFIRQIIVDIKLKENKLIENITDILLKAYKYSIDNNILKESGYQYYIELLLELGKTNDAIKVSEESVKLFKNSNQLWNQRINLLIKNEMVVKLFDNLSNNNEYNNIDKCFEMAVKNCTSSTTSTTSSTSTSSSSNLFIEYFKYQVVFKFDKDYKKIVDLFEKLLKQLDEFYQKCILYEEERIEKNINDIRSLYEKCLSIKEISSKDVDVWLNYRNFELKSAGDIERANTIATRGKKSLADPLPLLSQLQ", "length": 609 }, "evidence": [ { "id": "A0A287ADC2", "url": "https://omabrowser.org/oma/group/A0A287ADC2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VCY6-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "Utp6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEIIQERIEDRIPELEQLERIGLFSHAEIKAIIKKASDLEYKIHRRTLLKEDFINYVQYEINLLELIQRRRARIKYSFKKDEIEYSMVHRVQGVFGRASAKWKDDVQLWLSYIVFCKKWGTKTHLSKIFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYQEYFRMELMHAEKLRKEKQEFEKAAMDMGDFDHPEEILKGELARIIYKNSISKIKGAEFHVSLLAIAQLFDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQPGEEQPVSKQAKAVEMGRREERCCAVYEEAVKALPTEAMWKCYITFCLERFSKKTSSVPLRGQRLERTMLAFRKAHELKLLSEVQYKQWIDLLLRQDLFKEALQVAEAGTELFKDSVTMWQTKLQVLIDSKSPDVEMRFEEAFAHLKPQVCLPLWISWAEWSESAKSQEDTEAIFKKAIIAVTGASSVTLKEKYLDWAYRSGGYKKARAVFKSLQESRPFSVEFFRKMMQFEKEQEPCKMVNLREYYERALREFGTSDSDLWMDYIKEELNHPFGKPENCGQIYWRAMKMLQGQSAELFVAKHAMHQAGH", "length": 597 }, "evidence": [ { "id": "A0A287ADC2", "url": "https://omabrowser.org/oma/group/A0A287ADC2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9M0I7-1", "protein_name": "U3 small nucleolar RNA-associated-like protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADVVQYRLERMVDELDDLERREIFTRAEIAEIVKQRRKFEYRLKRPSPLKEDFIAYIDYEVKLDELRQLRRKSVARVTKKRKKKSVSDFAGVARIVEIYRLATMRYKGDINLWFRYLEFCKQKRHGRMKKALAQAIRFHPKVAGVWIYAASWEFDRNLNVTAARALMLNGLRVCSNSEDLWVEYLRMELTFLNKLKARKVALGEDKGSLVRDTKTVEDEQWKDENKELFMSLDEKEGNEKEENDEDSIVEDVEDVTEKVDFLKEKGSNVLQTIYSGAVEAIPSSFDLRKRFLEILEATDLAHSDEMRNTILSDLKRDFCNEPEYWNWLARHEMSGCISNEAGLEFANPQMQKAIQVFEEGLQTVTSSSMFEIYINFLMEAIVQSNGDENEISSLSNPIISHIINVYQKADETGCLTEELADEYVSLYLKLEKTHEAQKLAEKLCSEKFAGSAKLWLSRVSIEIRSLSENSSPSKADFQTVFELLSNALRKVPISESESLWLMAFNFFAHQRTYLDKLVEMSILSATKSHGSDHVFSLASTVVKFVLETKGAHSARKIYKRFLALPGPSLVLYKGCIEIETNLISVGDKDGLSNARKLYDSAVASYGQDVELWKNYYSLETKLGTSETANGVYWRARKTLNESADFIV", "length": 648 }, "evidence": [ { "id": "A0A287ADC2", "url": "https://omabrowser.org/oma/group/A0A287ADC2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQYEINLLELIQRRRTRIGYSFKKDEIENSIVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYKEYFRMELMHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKNSVSIIKGAEFHVSLLSIAQLFDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAVEVGRKEERCCAVYEEAVKTLPTEAMWKCYITFCLERFTKKSNSGFLRGKRLERTMTVFRKAHELKLLSECQYKQLSVSLLCYNFLREALEVAVAGTELFRDSGTMWQLKLQVLIESKSPDIAMLFEEAFVHLKPQVCLPLWISWAEWSEGAKSQEDTEAVFKKALLAVIGADSVTLKNKYLDWAYRSGGYKKARAVFKSLQESRPFSVDFFRKMIQFEKEQESCNMANIREYYERALREFGSADSDLWMDYMKEELNHPLGRPENCGQIYWRAMKMLQGESAEAFVAKHAMHQTGHL", "length": 597 }, "evidence": [ { "id": "A0A287ADC2", "url": "https://omabrowser.org/oma/group/A0A287ADC2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W397-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "Dmel\\CG7246", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAEFIAEMQERLLPEYEQMKNYSVFTADQVREIVSRRERLFLKINKSHQSITDYLDFILYEKHMHMTIVDKEKKMHVKLTGLKASIATRIMRLYREALAKFNHDRRLWSNWIKFSRKSNPVEVAGIYEKMLLYHGDSPDLWVDAALWLYEFNRLNIDRVKDILLRGLQRHPDSEALNKCFFDIMLKEAALASNERNLAENTLSEQDIKLERVEAVYRNSMANITQLDYFVKLLESCEDHQELTGKLQRMIIDDMQEKFPREPGLWDLLAQRELRGFHLGDLEEEDLDTSDEEPASKKSRSVNGRSLKRRIQLCVTVYKSAVEELQTTEMWNMYLDAMLALNSDGKTERILKQQCLADALQAGHRSQLMGVKHYATLRKMLCTAPSGREAAVTILTEALKNDSSVEMHELLLATHIQSDSEPLIYELFNKIQKSMGSEALPLWRSVILYYRTRQDSLGARRLDEIYGLACKAAWPEFGELRSDYLRYLWQERSVEEARKEYAKLAILPPMSLALHRQMVQLESSAAACDQASLKYWRMCYDFMACYFGKTQPRVWVEYLAFERDHGEAKNISLLTQRALSTLEPQYVAAFEAERALAYVGASI", "length": 602 }, "evidence": [ { "id": "A0A287ADC2", "url": "https://omabrowser.org/oma/group/A0A287ADC2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Pwp2p-containing subcomplex of 90S preribosome", "id": "GO:0034388", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034388", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADC2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADC2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADC2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADC2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "snoRNA binding", "id": "GO:0030515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030515", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADC2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000462", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADC2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ADC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2" }, { "id": "PF08640", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08640" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "U3 small nucleolar RNA-associated protein 6 N-terminal", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 91, "start_aa": "Ile", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287ADC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADC2" }, { "id": "PF24892", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24892" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "U3 small nucleolar RNA-associated protein 6 homolog C-terminal", "eco_id": "ECO_0000259", "start_pos": 308, "end_pos": 578, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ADD1-1", "uniprot_ac": "A0A287ADD1", "uniprot_id": "A0A287ADD1_PIG", "mass": { "chemical_mass": 87233.0, "monoisotopic_mass": 87233.0 }, "refseq": {}, "gene_names": [ { "name": "TBL3", "type": "recommended", "evidence": [ { "id": "A0A287ADD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1" } ] } ], "protein_names": [ { "name": "Transducin beta-like protein 3", "type": "recommended", "evidence": [ { "id": "A0A287ADD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1#function" }, { "database": "UniProtKB", "id": "ARBA00035000", "url": "https://www.uniprot.org/uniprotkb/ARBA00035000#function" }, { "database": "UniProtKB", "id": "A0A287BAF6", "url": "https://www.uniprot.org/uniprotkb/A0A287BAF6#function" }, { "database": "UniProtKB", "id": "A0A8W4F732", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F732#function" }, { "database": "UniProtKB", "id": "A0A8W4FH08", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH08#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TBL3", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1", "locus": { "chromosome": "3", "start_pos": 39989740, "end_pos": 39995123, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037686", "url": "https://www.ensembl.org/id/ENSSSCG00000037686" } ] } } ], "crossref": [ { "id": "A0A287ADD1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ADD1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037686", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037686", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011041", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011041", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013934", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013934", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19854", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19854", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19854:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19854:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08625", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08625", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287ADD1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BAF6", "url": "https://www.uniprot.org/uniprotkb/A0A287BAF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BAF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BAF6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F732", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F732", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F732-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F732-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH08", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH08-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TGQGVSGSCSPPLLSSYAIERKIEPFYKGGKVQLDQTGQHLFCVCGTRVNILDVASGAVLRSLEQEDQEDITAFDLSPDDEVLVTATRALLLAQWAWREGSIVRLWKAIHTAPVAAMAFDPTSTLLATGGCDGAVRVWDVVRHYGTHHFRGSPGVVHLVAFHPDPARLLLFSSAADASIRVWSLQDRSCLAVLTAHYSAVTSVTFSADGYTMISSGRDKICTVWDLQSLQATKTVPVFESVEAAVLLPEEPAPELGVKSTGLHFLTAGDQGILRVWEAASGQCVHAQPRLPGPGQELTHCALARAAGLLLSVTADHNLLLYEARSLQLQKQFAGYSEEVLDVRFLGPENSHVVVASNSPCLKVFELQTSACQILHGHTDIVLALDVFRKGWLFASCAKDQSIRIWRINKAGLVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALPSRSTAPDSGPVLLQAQATQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGIFSGHRRGLWCVQFSPMDQVLATASADGTVKLWALQDFSCLKTFEGHDASVGASRCRPSGSDGLVKLWTIKSNECVRTLDAHEDKVWGLHCSRLDDRALTAASDSRVILWKDVTEEEQAEEEARREEEVVRQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPESCEKLEATVLQLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGMLLRHEAPEELLAYDGVRASLEALLPYTERHFQRLSRTLQAAAFLDFLWHSMKLPTLPAAPPAL", "length": 795, "header": "tr|A0A287ADD1-1|A0A287ADD1_PIG Isoform 1 of Transducin beta-like protein 3 OS=Sus scrofa OX=9823 GN=TBL3 PE=4 SV=2 CANONICAL=A0A287ADD1-1" }, "isoforms": [ { "isoform_ac": "A0A287ADD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1/entry#A0A287ADD1-1", "sequence": { "sequence": "TGQGVSGSCSPPLLSSYAIERKIEPFYKGGKVQLDQTGQHLFCVCGTRVNILDVASGAVLRSLEQEDQEDITAFDLSPDDEVLVTATRALLLAQWAWREGSIVRLWKAIHTAPVAAMAFDPTSTLLATGGCDGAVRVWDVVRHYGTHHFRGSPGVVHLVAFHPDPARLLLFSSAADASIRVWSLQDRSCLAVLTAHYSAVTSVTFSADGYTMISSGRDKICTVWDLQSLQATKTVPVFESVEAAVLLPEEPAPELGVKSTGLHFLTAGDQGILRVWEAASGQCVHAQPRLPGPGQELTHCALARAAGLLLSVTADHNLLLYEARSLQLQKQFAGYSEEVLDVRFLGPENSHVVVASNSPCLKVFELQTSACQILHGHTDIVLALDVFRKGWLFASCAKDQSIRIWRINKAGLVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALPSRSTAPDSGPVLLQAQATQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGIFSGHRRGLWCVQFSPMDQVLATASADGTVKLWALQDFSCLKTFEGHDASVGASRCRPSGSDGLVKLWTIKSNECVRTLDAHEDKVWGLHCSRLDDRALTAASDSRVILWKDVTEEEQAEEEARREEEVVRQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPESCEKLEATVLQLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGMLLRHEAPEELLAYDGVRASLEALLPYTERHFQRLSRTLQAAAFLDFLWHSMKLPTLPAAPPAL", "length": 795, "header": "tr|A0A287ADD1-1|A0A287ADD1_PIG Isoform 1 of Transducin beta-like protein 3 OS=Sus scrofa OX=9823 GN=TBL3 PE=4 SV=2 CANONICAL=A0A287ADD1-1" }, "locus": { "chromosome": "3", "start_pos": 39995123, "end_pos": 39989772, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038475.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038475.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042019.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042019.2" } ] } }, { "isoform_ac": "A0A287BAF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1/entry#A0A287BAF6-1", "sequence": { "sequence": "MASRGCKVSPGLRPFCHQLDQTGQHLFCVCGTRVNILDVASGAVLRSLEQEDQEDITAFDLSPDDEVLVTATRALLLAQWAWREGSIVRLWKAIHTAPVAAMAFDPTSTLLATGGCDGAVRVWDVVRHYGTHHFRGSPGVVHLVAFHPDPARLLLFSSAADASIRVWSLQDRSCLAVLTAHYSAVTSVTFSADGYTMISSGRDKICTVWDLQSLQATKTVPVFESVEAAVLLPEEPAPELGVKSTGLHFLTAGDQGILRVWEAASGQCVHAQPRLPGPGQELTHCALARAAGLLLSVTADHNLLLYEARSLQLQKQFAGYSEEVLDVRFLGPENSHVVVASNSPCLKVFELQTSACQILHGHTDIVLALDVFRKGWLFASCAKDQSIRIWRINKAGLVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALPSRSTAPDSGPVLLQAQATQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGIFSGHRRGLWCVQFSPMDQVLATASADGTVKLWALQDFSCLKTFEGHDASVGASRCRPSGSDGLVKLWTIKSNECVRTLDAHEDKVWGLHCSRLDDRALTAASDSRVILWKDVTEEEQAEEEARREEEVVRQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPESCEKLEATVLQLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGMLLRHEAPEELLAYDGVRASLEALLPYTERHFQRLSRTLQAAAFLDFLWHSMKLPTLPAAPPAL", "length": 780, "header": "tr|A0A287BAF6-1|A0A287BAF6_PIG Computationally mapped isoform of Transducin beta-like protein 3 OS=Sus scrofa OX=9823 GN=TBL3 PE=4 SV=2 CANONICAL=A0A287ADD1-1" }, "locus": { "chromosome": "3", "start_pos": 39994576, "end_pos": 39989772, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051944.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051944.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053073.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053073.2" } ] } }, { "isoform_ac": "A0A8W4F732-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1/entry#A0A8W4F732-1", "sequence": { "sequence": "MASRGCKVSPGLRPFCHQLDQTGQHLFCVCGTRVNILDVASGAVLRSLEQEDQEDITAFDLSPDDEVLVTATRALLLAQWAWREGSIVRLWKAIHTAPVAAMAFDPTSTLLATGGCDGAVRVWDVVRHYGTHHFRGSPGVVHQGGPAHQRLFPPSSGRDKICTTVPVFESVEAAVLLPEEPAPELGVKSTGLHFLTAGDQGILRVWEAASGQCVHAQPRLPGPGQELTHCALARAAGLLLSVTADHNLLLYEARSLQLQKQFAGYSEEVLDVRFLGPENSHVVVASNSPCLKVFELQTSACQILHGHTDIVLALDVFRKGWLFASCAKDQSIRIWRINKAGLVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALPSRSTAPDSGPVLLQAQATQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGIFSGHRRGLWCVQFSPMDQVLATASADGTVKLWALQDFSCLKTFEGHDASVLRVVSGASRCRPSGSDGLVKLWTIKSNECVRTLDAHEDKVWGLHCSRLDDRALTAASDSRVILWKDVTEEEQAEEEARREEEVVRQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPESCEKLEATVLQLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGMLLRHEAPEELLAYDGVRASLEALLPYTERHFQRLSRTLQAAAFLDFLWHSMKLPTLPAAPPAL", "length": 730, "header": "tr|A0A8W4F732-1|A0A287ADD1_PIG Computationally mapped isoform of Transducin beta-like protein 3 OS=Sus scrofa OX=9823 GN=TBL3 PE=4 SV=1 CANONICAL=A0A287ADD1-1" }, "locus": { "chromosome": "3", "start_pos": 39994576, "end_pos": 39989772, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092563.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092563.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075041.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075041.1" } ] } }, { "isoform_ac": "A0A8W4FH08-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1/entry#A0A8W4FH08-1", "sequence": { "sequence": "TGQGFAGVGGNDMSSRGCKVSPGLRPFCHQLDQTGQHLFCVCGTRVNILDVASGAVLRSLEQEDQEDITAFDLSPDDEVLVTATRALLLAQWAWREGSIVRLWKAIHTAPVAAMAFDPTSTLLATGGCDGAVRVWDVVRHYGTHHFRGSPGVVHLVAFHPDPARLLLFSSAADASIRVWSLQDRSCLAVLTAHYSAVTSVTFSADGYTMISSGRDKICTVWDLQSLQATKTVPVFESVEAAVLLPEEPAPELGVKSTGLHFLTAGDQGILRVWEAASGQCVHAQPRLPGPGQELTHCALARAAGLLLSVTADHNLLLYEARSLQLQKQFAGYSEEVLDVRFLGPENSHVVVASNSPCLKVFELQTSACQILHGHTDIVLALDVFRKGWLFASCAKDQSIRIWRINKAGLVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALPSRSTAPDSGPVLLQAQATQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGIFSGHRRGLWCVQFSPMDQVLATASADGTVKLWALQDFSCLKTFEGHDASVGASRCRPSGSDGLVKLWTIKSNECVRTLDAHEDKVWGLHCSRLDDRALTAASDSRVILWKDVTEEEQAEEEARREEEVVRQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPESCEKLEATVLQLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGMLLRHEAPEELLAYDGVRASLEALLPYTERHFQRLSRTLQAAAFLDFLWHSMKLPTLPAAPPAL", "length": 792, "header": "tr|A0A8W4FH08-1|A0A287ADD1_PIG Computationally mapped isoform of Transducin beta-like protein 3 OS=Sus scrofa OX=9823 GN=TBL3 PE=4 SV=1 CANONICAL=A0A287ADD1-1" }, "locus": { "chromosome": "3", "start_pos": 39995123, "end_pos": 39989772, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104332.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104332.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078161.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078161.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F732", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F732" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1" } ], "pmid": "" }, { "name": "90S preribosome", "id": "GO:0030686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030686", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000472", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000472", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1" } ], "pmid": "" }, { "name": "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000480", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000480", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1" } ], "pmid": "" }, { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "U3 snoRNA binding", "id": "GO:0034511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034511", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ADD1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 795, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ADD1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ADD1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ADD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD1" }, { "id": "PF08625", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08625" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "U3 small nucleolar RNA-associated protein 13 C-terminal", "eco_id": "ECO_0000259", "start_pos": 649, "end_pos": 783, "start_aa": "Gln", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ADD9-1", "uniprot_ac": "A0A287ADD9", "uniprot_id": "A0A287ADD9_PIG", "mass": { "chemical_mass": 77373.0, "monoisotopic_mass": 77373.0 }, "refseq": { "ac": "XP_001925371", "name": "TBC1 domain family member 15 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925371" }, "gene_names": [ { "name": "TBC1D15", "type": "recommended", "evidence": [ { "id": "A0A287ADD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9" } ] }, { "name": "TBC1D15", "type": "synonym", "evidence": [ { "id": "XP_001925371", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925371" } ] } ], "protein_names": [ { "name": "TBC1 domain family member 15", "type": "recommended", "evidence": [ { "id": "A0A287ADD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9/entry#names_and_taxonomy" } ] }, { "name": "GTPase-activating protein RAB7", "type": "synonym", "evidence": [ { "id": "A0A287ADD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9/entry#names_and_taxonomy" } ] }, { "name": "TBC1 domain family member 15 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_001925371", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925371" } ] } ], "function": [ { "annotation": "Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RC55", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC55#function" }, { "database": "UniProtKB", "id": "ARBA00055283", "url": "https://www.uniprot.org/uniprotkb/ARBA00055283#function" }, { "database": "UniProtKB", "id": "A0A287ADD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9#function" }, { "database": "UniProtKB", "id": "A0A5G2QJP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP1#function" }, { "database": "UniProtKB", "id": "F1SH24", "url": "https://www.uniprot.org/uniprotkb/F1SH24#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TBC1D15", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9", "locus": { "chromosome": "5", "start_pos": 35908385, "end_pos": 35827473, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000512", "url": "https://www.ensembl.org/id/ENSSSCG00000000512" } ] } } ], "crossref": [ { "id": "A0A287ADD9", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ADD9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000512", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000512", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157246", "url": "https://www.ncbi.nlm.nih.gov/gene/100157246", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "5TUC", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5TUC&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021935", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021935", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157246", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157246", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YEGLNNP", "url": "https://omabrowser.org/oma/group/YEGLNNP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287ADD9", "url": "https://www.orthodb.org/?gene=A0A287ADD9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957:SF300", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957:SF300", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00005tuc", "url": "https://www.rcsb.org/structure/pdb_00005tuc", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5TUC", "url": "https://www.rcsb.org/structure/5TUC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12068", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12068", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8854214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001925371", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925371", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ADD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARR2", "url": "https://www.uniprot.org/uniprotkb/A0A287ARR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARR2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RC55", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RC55-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC55-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD35", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD35-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD35-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFD0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH24", "url": "https://www.uniprot.org/uniprotkb/F1SH24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH24-1", "url": "https://www.uniprot.org/uniprotkb/F1SH24-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAGVVSGKIIYEQEGVYIHSSFGKANDQDSLISGTLRVLEKDAEVIVDWRPLDDALDSSSILHAGKDSSSVVEWTQAPKERAHRGSERLNSYEAEWDMVNTVSFKKKPHTNGDAPSHRNGKSKWSFLFSLTDLKSIKQNKEGMGWSYLVFCLKDDVILPALHFHQGDSKLLIDSLEKYVVLCESAQDKRTLLVNCQNKSLSQSFENLLDEPAYGLIQKIKKDPYTATMVGFSKVTNYIFDSLRGSDPSAHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTELQKQKTDEYFRMKLQWKSVSEEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPVLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDVLCKAEAISLQMVKCKELPQAVCEILGLQDSEVTTPDSDIGEDENVGMTSCPTSSFYSNSLPVLAASEARDDNPPEISVSPNVSRLTPA", "length": 674, "header": "tr|A0A287ADD9-1|A0A287ADD9_PIG Isoform 1 of TBC1 domain family member 15 OS=Sus scrofa OX=9823 GN=TBC1D15 PE=1 SV=2 CANONICAL=A0A287ADD9-1" }, "isoforms": [ { "isoform_ac": "A0A287ADD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9/entry#A0A287ADD9-1", "sequence": { "sequence": "MAAAGVVSGKIIYEQEGVYIHSSFGKANDQDSLISGTLRVLEKDAEVIVDWRPLDDALDSSSILHAGKDSSSVVEWTQAPKERAHRGSERLNSYEAEWDMVNTVSFKKKPHTNGDAPSHRNGKSKWSFLFSLTDLKSIKQNKEGMGWSYLVFCLKDDVILPALHFHQGDSKLLIDSLEKYVVLCESAQDKRTLLVNCQNKSLSQSFENLLDEPAYGLIQKIKKDPYTATMVGFSKVTNYIFDSLRGSDPSAHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTELQKQKTDEYFRMKLQWKSVSEEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPVLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDVLCKAEAISLQMVKCKELPQAVCEILGLQDSEVTTPDSDIGEDENVGMTSCPTSSFYSNSLPVLAASEARDDNPPEISVSPNVSRLTPA", "length": 674, "header": "tr|A0A287ADD9-1|A0A287ADD9_PIG Isoform 1 of TBC1 domain family member 15 OS=Sus scrofa OX=9823 GN=TBC1D15 PE=1 SV=2 CANONICAL=A0A287ADD9-1" }, "locus": { "chromosome": "5", "start_pos": 35906013, "end_pos": 35827486, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042002.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042002.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041825.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041825.2" } ] } }, { "isoform_ac": "A0A287ARR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9/entry#A0A287ARR2-1", "sequence": { "sequence": "SVAAGLHHSLSNIIYEQEGVYIHSSFGKANDQDSLISGTLRVLEKDAEVIVDWRPLDDALDSSSILHAGKDSSSVVEWTQAPKERAHRGSERLNSYEAEWDMVNTVSFKKKPHTNGDAPSHRNGKSKWSFLFSLTDLKSIKQNKEGMGWSYLVFCLKDDVILPALHFHQGDSKLLIDSLEKYVVLCESAQDKRTLLVNCQNKSLSQSFENLLDEPAYGLIQKIKKDPYTATMVGFSKVTNYIFDSLRGSDPSAHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTELQKQKTKKNNFLLVKYELYKNLRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPVLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDVLCKAEAISLQMVKCKELPQAVCEILGLQDSEVTTPDSDIGEDENVGMTSCPTSSFYSNSLPVLAASEARDDNPPEISVSPNVSRLTPA", "length": 656, "header": "tr|A0A287ARR2-1|A0A287ARR2_PIG Computationally mapped isoform of TBC1 domain family member 15 OS=Sus scrofa OX=9823 GN=TBC1D15 PE=1 SV=2 CANONICAL=A0A287ADD9-1" }, "locus": { "chromosome": "5", "start_pos": 35906013, "end_pos": 35855679, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048467.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048467.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046643.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046643.2" } ] } }, { "isoform_ac": "A0A5G2QJP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9/entry#A0A5G2QJP1-1", "sequence": { "sequence": "MAAAGVVSGKDSSSVVEWTQAPKERAHRGSERLNSYEAEWDMVNTVSFKKKPHTNGDAPSHRNGKSKWSFLFSLTDLKSIKQNKEGMGWSYLVFCLKDDVILPALHFHQGDSKLLIDSLEKYVVLCESAQDKRTLLVNCQNKSLSQSFENLLDEPAYGLIQKIKKDPYTATMVGFSKVTNYIFDSLRGSDPSAHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTELQKQKTDEYFRMKLQWKSVSEEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPVLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDVLCKAEAISLQMVKCKELPQAVCEILGLQDSEVTTPDSDIGEDENVGMTSCPTSSFYSNSLPVLAASEARDDNPPEISVSPNVSRLTPA", "length": 616, "header": "tr|A0A5G2QJP1-1|A0A287ADD9_PIG Computationally mapped isoform of TBC1 domain family member 15 OS=Sus scrofa OX=9823 GN=TBC1D15 PE=1 SV=1 CANONICAL=A0A287ADD9-1" }, "locus": { "chromosome": "5", "start_pos": 35906013, "end_pos": 35827486, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076863.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076863.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062267.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062267.1" } ] } }, { "isoform_ac": "A0A5G2RC55-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9/entry#A0A5G2RC55-1", "sequence": { "sequence": "IIYEQEGVYIHSSFGKANDQDSLISGTLRVLEKDAEVIVDWRPLDDALDSSSILHAGKDSSSVVEWTQAPKERAHRGSERLNSYEAEWDMVNTVSFKKKPHTNGDAPSHRNGKSKWSFLFSLTDLKSIKQNKEGMGWSYLVFCLKDDVILPALHFHQGDSKLLIDSLEKYVVLCESAQDKRTLLVNCQNKSLSQSFENLLDEPAYGLIQKIKKDPYTATMVGFSKVTNYIFDSLRGSDPSAHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTELQKQKTDEYFRMKLQWKSVSEEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPVLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDVLCKAEAISLQMVKCKELPQAVCEILGLQDSEVTTPDSDIGEDENVGMTSCPTSSFYSNSLPVLAASEARDDNPPEISVSPNVSRLTPA", "length": 664, "header": "tr|A0A5G2RC55-1|A0A287ADD9_PIG Computationally mapped isoform of TBC1 domain family member 15 OS=Sus scrofa OX=9823 GN=TBC1D15 PE=1 SV=1 CANONICAL=A0A287ADD9-1" }, "locus": { "chromosome": "5", "start_pos": 35906013, "end_pos": 35856278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069415.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069415.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068199.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068199.1" } ] } }, { "isoform_ac": "A0A8W4FD35-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9/entry#A0A8W4FD35-1", "sequence": { "sequence": "MNLHIPAEAGVGDSSSVVEWTQAPKERAHRGSERLNSYEAEWDMVNTVSFKKKPHTNGDAPSHRNGKSKWSFLFSLTDLKSIKQNKEGMGWSYLVFCLKDDVILPALHFHQGDSKLLIDSLEKYVVLCESAQDKRTLLVNCQNKSLSQSFENLLDEPAYGLIQKIKKDPYTATMVGFSKVTNYIFDSLRGSDPSAHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTELQKQKTKKNNFLLVKYELYKNLRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPVLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDVLCKAEAISLQMVKCKELPQAVCEILGLQDSEVTTPDSDIGEDENVGMTSCPTSSFYSNSLPVLAASEARDDNPPEISVSPNVSRLTPA", "length": 598, "header": "tr|A0A8W4FD35-1|A0A287ADD9_PIG Computationally mapped isoform of TBC1 domain family member 15 OS=Sus scrofa OX=9823 GN=TBC1D15 PE=1 SV=1 CANONICAL=A0A287ADD9-1" }, "locus": { "chromosome": "5", "start_pos": 35906013, "end_pos": 35859612, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105629.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105629.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076763.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076763.1" } ] } }, { "isoform_ac": "A0A8W4FFD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9/entry#A0A8W4FFD0-1", "sequence": { "sequence": "IIYEQEGVYIHSSFGKANDQDSLISGTLRVLEKDAEVIVDWRPLDDALDSSSILHAGKDSSSVVEWTQAPKERAHRGSERLNSYEAEWDMVNTVSFKKKPHTNGDAPSHRNGKSKWSFLFSLTDLKSIKQNKEGMGWSYLVFCLKDDVILPALHFHQGDSKLLIDSLEKYVVLCESAQDKRTLLVNCQNKSLSQSFENLLDEPAYGLIQKIKKDPYTATMVGFSKVTNYIFDSLRGSDPSAHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTELQKQKTKKNNFLLVKYELYKNLRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPVLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDVLCKAEAISLQMVKCKELPQAVCEILGLQDSEVTTPDSDIGEDENVGMTSCPTSSFYSNSLPVLAASEARDDNPPEISVSPNVSRLTPA", "length": 644, "header": "tr|A0A8W4FFD0-1|A0A287ADD9_PIG Computationally mapped isoform of TBC1 domain family member 15 OS=Sus scrofa OX=9823 GN=TBC1D15 PE=1 SV=1 CANONICAL=A0A287ADD9-1" }, "locus": { "chromosome": "5", "start_pos": 35906013, "end_pos": 35856278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102809.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102809.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078022.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078022.1" } ] } }, { "isoform_ac": "F1SH24-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9/entry#F1SH24-1", "sequence": { "sequence": "MAAAGVVSGKIIYEQEGVYIHSSFGKANDQDSLISGTLRVLEKDSSSVVEWTQAPKERAHRGSERLNSYEAEWDMVNTVSFKKKPHTNGDAPSHRNGKSKWSFLFSLTDLKSIKQNKEGMGWSYLVFCLKDDVILPALHFHQGDSKLLIDSLEKYVVLCESAQDKRTLLVNCQNKSLSQSFENLLDEPAYGLIQKIKKDPYTATMVGFSKVTNYIFDSLRGSDPSAHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTELQKQKTDEYFRMKLQWKSVSEEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPVLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDVLCKAEAISLQMVKCKELPQAVCEILGLQDSEVTTPDSDIGEDENVGMTSCPTSSFYSNSLPVLAASEARDDNPPEISVSPNVSRLTPA", "length": 649, "header": "tr|F1SH24-1|A0A287ADD9_PIG Computationally mapped isoform of TBC1 domain family member 15 OS=Sus scrofa OX=9823 GN=TBC1D15 PE=1 SV=2 CANONICAL=A0A287ADD9-1" }, "locus": { "chromosome": "5", "start_pos": 35906013, "end_pos": 35827486, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000551.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000551.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000541.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000541.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Crystal structure of TBC1D15 GTPase-activating protein (GAP) domain and its activity on Rab GTPases.", "journal": "Protein Sci.", "date": "2017", "authors": "Chen Yan-Na, Gu Xin, Zhou X Edward, Wang Weidong, Cheng Dandan, Ge Yinghua, Ye Fei, Xu H Eric, Lv Zhengbing", "evidence": [ { "database": "UniProtKB", "id": "F1SH24", "url": "https://www.uniprot.org/uniprotkb/F1SH24" } ], "reference": [ { "type": "PubMed", "id": "28168758", "url": "https://glygen.org/publication/PubMed/28168758" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SH24", "url": "https://www.uniprot.org/uniprotkb/F1SH24" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157246", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157246", "resource": "KEGG Pathway" }, { "id": "R-SSC-8854214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "resource": "Reactome", "description": "TBC/RABGAPs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A4L6-1", "protein_name": "TBC1 domain family member 15", "gene_name": "Tbc1d15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAGVVSGKIIYEQEGVYIHSSSGKANDQDSLISGILRVLEKDAEVIVDWRPLDDALDSSSILYAGKDSSSVVEWTQAPKERAHRGSEHQSSYEAEWDMVTTVSFKKKPHTNGDAPSHRNGKSKWSFLFSLADLKSIKQSKEGMGWSYLVFCLKDDVVLPALHFHQGDSKLLIESLGKYVVLCESSQDSRTLLVNCQNKSLSQSFENLLDEPAYGLIQKIKKDPYTATMVGFSKVTNYIFDSLRGSDPSTHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWTKSLDSEGRLLNVESMKQMIFRGGLSHSLRKQAWKFLLGYFPWDSTKEERTQLQKQKTDEYFRMKLQWKSVSEAQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDILCKAEAISLQMAQCKELPQAVCEILGLQDSEVTTPDSDTDENVGTPCPVSAFPSSTLPVVAASEAKEDSPAQTLASPNACRLTPA", "length": 671 }, "evidence": [ { "id": "A0A287ADD9", "url": "https://omabrowser.org/oma/group/A0A287ADD9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8TC07-1", "protein_name": "TBC1 domain family member 15", "gene_name": "TBC1D15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAGVVSGKIIYEQEGVYIHSSCGKTNDQDGLISGILRVLEKDAEVIVDWRPLDDALDSSSILYARKDSSSVVEWTQAPKERGHRGSEHLNSYEAEWDMVNTVSFKRKPHTNGDAPSHRNGKSKWSFLFSLTDLKSIKQNKEGMGWSYLVFCLKDDVVLPALHFHQGDSKLLIESLEKYVVLCESPQDKRTLLVNCQNKSLSQSFENLLDEPAYGLIQAGLLDRRKLLWAIHHWKKIKKDPYTATMIGFSKVTNYIFDSLRGSDPSTHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTQLQKQKTDEYFRMKLQWKSISQEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCTNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDILCKAEAISLQMVKCKELPQAVCEILGLQGSEVTTPDSDVGEDENVVMTPCPTSAFQSNALPTLSASGARNDSPTQIPVSSDVCRLTPA", "length": 691 }, "evidence": [ { "id": "A0A287ADD9", "url": "https://omabrowser.org/oma/group/A0A287ADD9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CXF4-1", "protein_name": "TBC1 domain family member 15", "gene_name": "Tbc1d15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGVVSGKIIYEQEGVYIHSSCGKANDQDSLISGILRVLEKDAEVIVDWRPLDDALDSSSILCAGKDSSSVVEWTQAPKERAHRGSDQQSSYEAEWDMVTTVSFKKKPHTNGDAPGHRNGKSKWSFLFSLADLKSVKQSKEGMGWSYLVFCLKDDVMLPALHFHQGDSKLLIESLEKYVVLCESPQDSRTLLVNCQNKSLSQSFENLLDEPAYGLIQKIKKDPYTATMVGFSKVTNYIFDSLRGSDPSTHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWNKSLDPEGRLVAVESMKQKIFRGGLSHSLRKQAWKFLLGYFPWDSTKEERTQLQKQKTDEYFRMKLQWKSVSEAQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQIMAKHYGFNEILKHINELSMKIDVEDILCKAEAISLQMAQCKELPQAVCEILGLQDSEITTPDSDTDENVGSPCPVSAFPSSTLPILAASEAKDDSPTQTLASPNACRLTPA", "length": 671 }, "evidence": [ { "id": "A0A287ADD9", "url": "https://omabrowser.org/oma/group/A0A287ADD9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADD9", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" }, { "start_pos": 667, "end_pos": 669, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ADD9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 674, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ADD9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ADD9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ADD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADD9" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 329, "end_pos": 539, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 199, "end_pos": 201 }, { "start_pos": 399, "end_pos": 401 }, { "start_pos": 667, "end_pos": 669 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ADE1-1", "uniprot_ac": "A0A287ADE1", "uniprot_id": "A0A287ADE1_PIG", "mass": { "chemical_mass": 61304.0, "monoisotopic_mass": 61304.0 }, "refseq": { "ac": "XP_020941804", "name": "zinc finger and SCAN domain-containing protein 25 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941804" }, "gene_names": [ { "name": "ZSCAN25", "type": "recommended", "evidence": [ { "id": "A0A287ADE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1" } ] }, { "name": "ZSCAN25", "type": "synonym", "evidence": [ { "id": "XP_020941804", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941804" } ] } ], "protein_names": [ { "name": "Zinc finger and SCAN domain containing 25", "type": "synonym", "evidence": [ { "id": "A0A287ADE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1/entry#names_and_taxonomy" } ] }, { "name": "zinc finger and SCAN domain-containing protein 25 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020941804", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941804" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADE1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A287BQ21", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ21#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ADE1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZSCAN25", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1", "locus": { "chromosome": "3", "start_pos": 6579150, "end_pos": 6569304, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039842", "url": "https://www.ensembl.org/id/ENSSSCG00000039842" } ] } } ], "crossref": [ { "id": "ENSSSCG00000039842", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039842", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07936", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07936", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110259853", "url": "https://www.ncbi.nlm.nih.gov/gene/110259853", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038269", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038269", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110259853", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259853", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VCGECWK", "url": "https://omabrowser.org/oma/group/VCGECWK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287ADE1", "url": "https://www.orthodb.org/?gene=A0A287ADE1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF379", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF379", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399:SF54", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399:SF54", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020941804", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941804", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ADE1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQ21", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQ21-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ21-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLKEHPGMAEDPQQQMGVPVVKLEKELPWGRAREDPSPETFRLRFRQFRYQEAAGPQEALRELQELCRQWLRPELHTKEQILELLVLEQFLTILPREFYAWMREHGPESGKALVAMVEDFTEGALEAKAVPCHVQGDQEETALCRGPWEPGVHLGPVEVKPEWGMPRGEGVQGLDQGTEEQLNQNPGDGMQAFQEQALPGVQAGLGLPAVSTRDQEMAAGFLTAGSQGLGPFKDMALAFPEEEWRHVTPAQIDCFGEYVDSQACGVSPPGVGSGEKEPKTQLADLKGALARVPSERFGEAALQSPELGRTCEQEAGSSVGSTLGPPPPPHGVAPLPRDLKTPSAFWKPFQCPECGKGFSRSSNLVRHQRTHEEEKSFGCVECGKGFTLREYLTKHQRTHLGKRPYVCGQCWKTFSQRHHLEVHQRSHTGEKPYQCGDCWKSFSRRQHLQVHRRTHTGEKPYTCECGKSFSRNANLAVHRRAHTGEKPYGCQVCGKRFSKGERLVRHQRIHTGEKPYCCPACGRSFNQRSILNRHQKTQHRQETPGQ", "length": 546, "header": "tr|A0A287ADE1-1|A0A287ADE1_PIG Isoform 1 of Zinc finger and SCAN domain containing 25 OS=Sus scrofa OX=9823 GN=ZSCAN25 PE=3 SV=1 CANONICAL=A0A287ADE1-1" }, "isoforms": [ { "isoform_ac": "A0A287ADE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1/entry#A0A287ADE1-1", "sequence": { "sequence": "MLKEHPGMAEDPQQQMGVPVVKLEKELPWGRAREDPSPETFRLRFRQFRYQEAAGPQEALRELQELCRQWLRPELHTKEQILELLVLEQFLTILPREFYAWMREHGPESGKALVAMVEDFTEGALEAKAVPCHVQGDQEETALCRGPWEPGVHLGPVEVKPEWGMPRGEGVQGLDQGTEEQLNQNPGDGMQAFQEQALPGVQAGLGLPAVSTRDQEMAAGFLTAGSQGLGPFKDMALAFPEEEWRHVTPAQIDCFGEYVDSQACGVSPPGVGSGEKEPKTQLADLKGALARVPSERFGEAALQSPELGRTCEQEAGSSVGSTLGPPPPPHGVAPLPRDLKTPSAFWKPFQCPECGKGFSRSSNLVRHQRTHEEEKSFGCVECGKGFTLREYLTKHQRTHLGKRPYVCGQCWKTFSQRHHLEVHQRSHTGEKPYQCGDCWKSFSRRQHLQVHRRTHTGEKPYTCECGKSFSRNANLAVHRRAHTGEKPYGCQVCGKRFSKGERLVRHQRIHTGEKPYCCPACGRSFNQRSILNRHQKTQHRQETPGQ", "length": 546, "header": "tr|A0A287ADE1-1|A0A287ADE1_PIG Isoform 1 of Zinc finger and SCAN domain containing 25 OS=Sus scrofa OX=9823 GN=ZSCAN25 PE=3 SV=1 CANONICAL=A0A287ADE1-1" }, "locus": { "chromosome": "3", "start_pos": 6578368, "end_pos": 6571775, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094308.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094308.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075735.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075735.1" } ] } }, { "isoform_ac": "A0A287BQ21-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1/entry#A0A287BQ21-1", "sequence": { "sequence": "MLKEHPGMAEDPQQQMGVPVVKLEKELPWGRAREDPSPETFRLRFRQFRYQEAAGPQEALRELQELCRQWLRPELHTKEQILELLVLEQFLTILPREFYAWMREHGPESGKALVAMVEDFTEGALEAKAVPCHVQGDQEETALCRGPWEPGVHLGPVEVKPEWGMPRGEGVQGLDQGTEEQLNQNPGDGMQAFQEQGVGSGEKEPKTQLADLKGALARVPSERFGEAALQSPELGRTCEQEAGSSVGSTLGPPPPPHGVAPLPRDLKTPSAFWKPFQCPECGKGFSRSSNLVRHQRTHEEEKSFGCVECGKGFTLREYLTKHQRTHLGKRPYVCGQCWKTFSQRHHLEVHQRSHTGEKPYQCGDCWKSFSRRQHLQVHRRTHTGEKPYTCECGKSFSRNANLAVHRRAHTGEKPYGCQVCGKRFSKGERLVRHQRIHTGEKPYCCPACGRSFNQRSILNRHQKTQHRQETPGQ", "length": 473, "header": "tr|A0A287BQ21-1|A0A287BQ21_PIG Computationally mapped isoform of Zinc finger and SCAN domain containing 25 OS=Sus scrofa OX=9823 GN=ZSCAN25 PE=3 SV=3 CANONICAL=A0A287ADE1-1" }, "locus": { "chromosome": "3", "start_pos": 6578368, "end_pos": 6571775, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046029.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046029.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058274.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058274.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 248, "start_aa": "Thr", "end_pos": 248, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr248", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADE1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110259853", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259853", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9RXZ9-1", "protein_name": "Zinc finger and SCAN domain containing 25", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLVERPGMAEEPQQQMGGHVVKLEKELPWGRTREDPSPETFRLRFRQFRYQEAAGPQEALRELQELCRQWLRPELHTKEQILELLVLEQFLTILPREFYAWIWEHGPESGKALVAMVEDFTQRALEAKAVPCHVQGQREETTLCRDPWEPSVHLGPVEVKPEWGMPHGEGIQDLDRGTEEQLSQDPGEGTQAFQEQALPVLQAGAGLPAVSTRDQEVAASFLTAGSQGLGPFKDMALAFPEEEWRHVTPAQIDCFGEYVEPQDCGVSPPGLGSKDKEAKTQLADPKGQLACGRAERCGEAALQGPESGRPSEQQAGSSVGNAPGPLLPQHSVAPLPDDLQTHSSFWKPFQCPECGKGFSRSSNLVRHQRTHEEEKSYSCGECGKGFALREYLLKHQRTHLGRRPHVCSECWKTFSQRHHLAVHQRSHTGEKPFQCADCWRSFSRRQHLQVHRRTHTGEKPYTCECGKRFSRNANLAVHRRTHTGEKPYGCQVCGKRFSKGERLVRHQRIHTGEKPYRCPACGRSFNQRSILNRHQKTQHRQEPPGQ", "length": 546 }, "evidence": [ { "id": "A0A287ADE1", "url": "https://omabrowser.org/oma/group/A0A287ADE1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A6L5-1", "protein_name": "Zinc finger and SCAN domain containing 25", "gene_name": "Zscan25", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKERLEMAEDPQQQMGAPVVKLEKELPWGRGGEDSSPEAFRLRFRQFRYQEAAGPQEALRELQELCRRWLRPELHTKEQILELLVLEQFLTILPRELYTWIREHSPDSGKALVAMVEELMGSTEAKAVGEKRVSRPFSVPCHAQGEQLVTALGGGSWQSGIHLGPVEVKPEWGIPQGEGVQSLGPSTAEQLSQGPGDGTQAFQEQALPILHVGSGLPTVSARDQEIAAGFLAATSQGLGPFKDMTLGFPEEEWRHVAPAQIDCFGEYVDSQDCGAPPGAGSKEKEAKPQQEDLKRAFVGLTSDGFGEAAIQVPVPGGTCEQEPGGSGTSVPGLPAPQPGVPLPEALSAHSSFWKPFQCPECGKGFSRSSNLVRHQRTHEEEKAFGCVECGKGFTLREYLTKHQRTHLGKRPYVCGECWKTFSQRHHLEVHQRSHTGEKPYKCADCWKGFSRRQHLLVHRRTHTGEKPYTCECGKSFSRNANLAVHRRAHTGEKPYGCQVCGKRFSKGERLVRHQRIHTGEKPYHCPACGRSFNQRSILNRHQKTQHRQEPPVQ", "length": 554 }, "evidence": [ { "id": "A0A287ADE1", "url": "https://omabrowser.org/oma/group/A0A287ADE1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6NSZ9-1", "protein_name": "Zinc finger and SCAN domain-containing protein 25", "gene_name": "ZSCAN25", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLKEHPEMAEAPQQQLGIPVVKLEKELPWGRGREDPSPETFRLRFRQFRYQEAAGPQEALRELQELCRRWLRPELHTKEQILELLVLEQFLTILPREFYAWIREHGPESGKALAAMVEDLTERALEAKAVPCHRQGEQEETALCRGAWEPGIQLGPVEVKPEWGMPPGEGVQGPDPGTEEQLSQDPGDETRAFQEQALPVLQAGPGLPAVNPRDQEMAAGFFTAGSQGLGPFKDMALAFPEEEWRHVTPAQIDCFGEYVEPQDCRVSPGGGSKEKEAKPPQEDLKGALVALTSERFGEASLQGPGLGRVCEQEPGGPAGSAPGLPPPQHGAIPLPDEVKTHSSFWKPFQCPECGKGFSRSSNLVRHQRTHEEKSYGCVECGKGFTLREYLMKHQRTHLGKRPYVCSECWKTFSQRHHLEVHQRSHTGEKPYKCGDCWKSFSRRQHLQVHRRTHTGEKPYTCECGKSFSRNANLAVHRRAHTGEKPYGCQVCGKRFSKGERLVRHQRIHTGEKPYHCPACGRSFNQRSILNRHQKTQHRQEPLVQ", "length": 544 }, "evidence": [ { "id": "A0A287ADE1", "url": "https://omabrowser.org/oma/group/A0A287ADE1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADE1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADE1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADE1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1" } ], "pmid": "" }, { "name": "negative regulation of cell differentiation", "id": "GO:0045596", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045596", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADE1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADE1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADE1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADE1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADE1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ADE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 349, "end_pos": 376, "start_aa": "Phe", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287ADE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ADE1" }, { "id": "PS50804", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50804" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SCAN box", 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{ "id": "ssc:100514519", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514519", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MRIVHQP", "url": "https://omabrowser.org/oma/group/MRIVHQP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287ADY8", "url": "https://www.orthodb.org/?gene=A0A287ADY8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14522", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14522", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14522:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14522:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15386", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15386", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020942075", "url": 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"length": 586, "header": "tr|A0A287ADY8-1|A0A287ADY8_PIG Isoform 1 of Proline rich 14 OS=Sus scrofa OX=9823 GN=PRR14 PE=4 SV=1 CANONICAL=A0A287ADY8-1" }, "isoforms": [ { "isoform_ac": "A0A287ADY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADY8/entry#A0A287ADY8-1", "sequence": { "sequence": "MDLPGDSSPPGRQRLCRQPLARALWGARSPKRPKLQPLGAPSPLEKASRRVLAVVLEDVMAAHMVPLVPQEEISTPRHRSNHQDSARSQPPASPPRQATWCSQARPPDPLRLCREPLSRVHRPPSTLRRRSKPTPGPEEGPSQKVDQAPQPTLVVMLEDIASRRAPVEGFAGETPNFIVPAKRAEPMVRVHHPKPPPRDLEPPFQPPAMSTDPPENPPPAPDPVLERPSTPPPSSLLRPRLSPWGLAPLFHSVRSKLESFADIFLTPNKAPRPPPPSPPMKLELKIAISEAEQSRVAEGTAAVSPRPPIHQWRAQDQNPPAPLPRPSLGRSHSCPDLGPPGRDTCSWPPALPHPSRPRPRRHTVGGGEMARARPPPRPCLRKEVFPLGGVGGAPPLVTSCSSTASTSAFSEASEPRLSSTKRKEPRASEDQVLSDPESKTMGKVSRFRIRRTPARSQLNLTPMGLPRPIRLNKKEFSLEEIYTNKNYQSPTTRRTFETIFEEPRERNGTLIFTSSKKLRRTVEFRDCSLPRSRRPSRGARAAAGRTVTPNLAPNPDVGPLLQQRLQELDALLLEEEEGDQEQPHRT", "length": 586, "header": "tr|A0A287ADY8-1|A0A287ADY8_PIG Isoform 1 of Proline rich 14 OS=Sus scrofa OX=9823 GN=PRR14 PE=4 SV=1 CANONICAL=A0A287ADY8-1" }, "locus": { "chromosome": "3", "start_pos": 17750428, "end_pos": 17745990, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037695.2", "url": "https://www.ensembl.org/id/ENSSSCT00000037695.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056620.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056620.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 134, "start_aa": "Thr", "end_pos": 134, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr134", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADY8", "url": "https://www.uniprot.org/uniprotkb/A0A287ADY8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514519", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514519", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZWF4-1", "protein_name": "Proline rich 14", "gene_name": "Prr14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLPGDSSPSTQPSLCRQPLARALWEARSPKRPRLQPLGSPSSLEKASRRVLAVVLEDVMATNRVPLAHKADVPSLLNHNHQQDSVCTQSPTLPSHQVKWSLEARPPDPLHLCREPLSRIRQSSPTSRMRSRMAPGPEESPSQKTDQVPQPTLVVVLKDIASARQPVEGFAEDQPNLIVPAQRAEPVTKAGQPMPTPSDLEPPFQLSTLPADPPESPVPEPALETPLTPTSSSLLRPRLSPWGLAPLFRSVRSKLESFADIFLTPNKAPQPPPPPPPMKLELKIAISEAEQSKATEKMTSVSPRPPIRQWRTQCNSPAPVPKLPLGRSYSCPDLGPPDPGSWPPVPAQSSQSRPRRHTVGCGEMARTPPPPRPCLRKEVFPLGGVGVSPSLATSCSANASASFFCEPAEPRLGSTKGKELRATKDKVVSDPEKKTLGKVSRFRIRRTPVRLQPNLTPMGLPRPIRLNKKEFTLEEIYTNKNYQSPTARRTFETIFEEPQERNGTLIFTSSRKLRRAVEFRDSSLPRSRRPSRGVRTAASRTLTPNLAPSQDVGSLLQERLKELDALLLEEEIDREHPCHL", "length": 580 }, "evidence": [ { "id": "A0A287ADY8", "url": "https://omabrowser.org/oma/group/A0A287ADY8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0VBZ8-1", "protein_name": "Proline-rich protein 14", "gene_name": "PRR14", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDLPGDSSTPGRQRLCRQPHAGALWGAKSPKRPKLQPLGAPSPLEKASRRVLAVVLEDVMAARMVPLEPQEESSTPRHHSNHRDSVRSQPPASPPRQAMWSPQARPPDPLHLCREPLSRIRRPPSTPRRQSRTTPGPDEGPSQKVDQVHQPTLVVMLQDIASSRPRAEGFADEAPNFIIPARRAEPKVMVHQPKPPSRDLPAPSRPSALSANPLASPPPAPDPVLEPPSTPPPSSLLRPRLSPWGLAPLFHSVRSKLESFADIFLTPNKAPRPPPPSPPMKLELKIAISEAGQPGASEGTVTVSPRPPIRQWRAQDQNPSATLTKPSLGRSHSCPDLGPPGPDPCSWPPVPAPSSRPRPRRHTVGGGEMAKAPPPPRPCLRKEVFPLGGVGASPPLVTSCSSTASTSSFSEPAEPRLSSTKRKEPRAPEDQVLPDSETKTIGKVSRFRIRRTPARSQINLTPMGLPRPVRLNKKEFSLEEIYTNKNYQSPTTRRTFETIFEEPRERNGTLIFTSSRKLRRTVEFRDSSLPRSRRPSRGARATAGRTLPPSLAPSPDVEPLLQQRLQELDASLLEEEEEGDQDQPHRT", "length": 587 }, "evidence": [ { "id": "A0A287ADY8", "url": "https://omabrowser.org/oma/group/A0A287ADY8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { 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"phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE42", "url": "https://www.uniprot.org/uniprotkb/A0A287AE42" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9033241", "name": "", 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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. 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"url": "https://www.ensembl.org/id/ENSSSCP00000042247.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE50", "url": "https://www.uniprot.org/uniprotkb/A0A287AE50" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518723", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518723", "resource": "KEGG Pathway" }, { "id": "R-SSC-9020958", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020958", "resource": "Reactome", "description": "Interleukin-21 signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2UB88-1", "protein_name": "Interleukin 21 receptor", "gene_name": "IL21R", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": 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"https://www.ebi.ac.uk/interpro/entry/IPR016163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11699", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11699", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00171", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00171", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005664792", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664792", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AEA5", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RID2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RID2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RID2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RID2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHZ9", "url": "https://www.uniprot.org/uniprotkb/F1RHZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHZ9-1", "url": "https://www.uniprot.org/uniprotkb/F1RHZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGVTRSWAGLRSISHSPALWVGGGGATLRTSRFPPAERPAVGGKRRGSAMAETCTGSRASEIFTTLEYGPVPESHACALAWLDTQDRLLGHYVNGKWLKPEHRSSVPCQDPITGEKLASCLQAQTEDVAEAVEAARASLENWSTLPGAFRAQYLTRLAKMIQKHQRLFWTLESLVTGRAVREIRDRDVPLAQQLLQYHAIQAHTQEEALAGWEPTGVIGLVLPPTFSFLEMMWRICPALAVGCTVVVLVPPASPTPLLLAQLAGELGQFPGILNVISGPAVLGLVLSSQPGVQKVAFCGAVEEGRALRRFLAGQGPELGLALGAESLLLMTEAADVDSAVEGVVDAAWSDRSLGGLRLLIQESVWDETMRRLQARMGRLRGGRGLDGAVDMGARGTAARDQAQRYVSEAQRQGAQVFQAGSVPSDSPFFPPTLISDLPPASPCTQAEVPWPLVVASPFRTAKEALALANGTPGGGSASVWSERLGQALELAYGLRMGTVWINAHGLRDPAVPTGGCKESGSSWHGGLDGLYEYLRPSGTPARLPYLSENLNYDTFGLAVPSTLPAGPETGPSPAPPYGLFVGGRFQAPGARSSRPIWDSHGKLHGYVAEGGAKDIRGAVEAAHQAAPGWVGQSPGARAALLWALAAALQRRESTLASRLERHGVELQVAKAEVELSVRRLRAWGARVQAQGCTLQVAELRGPVLRLREPLGVLAIVCPDEWPLLAFVSLLAPALAHGNTVVLVPSGACPIPALEVCQDMAALLPAGLVNVVTGDPDHLTRCLALHQDIQALWYFGSAQGSQFVEWASAGNLKPVWVNRGCPRAWDQEAEGAGPELGLRAARTKALWLPMGD", "length": 852, "header": "tr|A0A287AEA5-1|A0A287AEA5_PIG Isoform 1 of Aldehyde dehydrogenase 16 family member A1 OS=Sus scrofa OX=9823 GN=ALDH16A1 PE=1 SV=2 CANONICAL=A0A287AEA5-1" }, "isoforms": [ { "isoform_ac": "A0A287AEA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA5/entry#A0A287AEA5-1", "sequence": { "sequence": "MGGVTRSWAGLRSISHSPALWVGGGGATLRTSRFPPAERPAVGGKRRGSAMAETCTGSRASEIFTTLEYGPVPESHACALAWLDTQDRLLGHYVNGKWLKPEHRSSVPCQDPITGEKLASCLQAQTEDVAEAVEAARASLENWSTLPGAFRAQYLTRLAKMIQKHQRLFWTLESLVTGRAVREIRDRDVPLAQQLLQYHAIQAHTQEEALAGWEPTGVIGLVLPPTFSFLEMMWRICPALAVGCTVVVLVPPASPTPLLLAQLAGELGQFPGILNVISGPAVLGLVLSSQPGVQKVAFCGAVEEGRALRRFLAGQGPELGLALGAESLLLMTEAADVDSAVEGVVDAAWSDRSLGGLRLLIQESVWDETMRRLQARMGRLRGGRGLDGAVDMGARGTAARDQAQRYVSEAQRQGAQVFQAGSVPSDSPFFPPTLISDLPPASPCTQAEVPWPLVVASPFRTAKEALALANGTPGGGSASVWSERLGQALELAYGLRMGTVWINAHGLRDPAVPTGGCKESGSSWHGGLDGLYEYLRPSGTPARLPYLSENLNYDTFGLAVPSTLPAGPETGPSPAPPYGLFVGGRFQAPGARSSRPIWDSHGKLHGYVAEGGAKDIRGAVEAAHQAAPGWVGQSPGARAALLWALAAALQRRESTLASRLERHGVELQVAKAEVELSVRRLRAWGARVQAQGCTLQVAELRGPVLRLREPLGVLAIVCPDEWPLLAFVSLLAPALAHGNTVVLVPSGACPIPALEVCQDMAALLPAGLVNVVTGDPDHLTRCLALHQDIQALWYFGSAQGSQFVEWASAGNLKPVWVNRGCPRAWDQEAEGAGPELGLRAARTKALWLPMGD", "length": 852, "header": "tr|A0A287AEA5-1|A0A287AEA5_PIG Isoform 1 of Aldehyde dehydrogenase 16 family member A1 OS=Sus scrofa OX=9823 GN=ALDH16A1 PE=1 SV=2 CANONICAL=A0A287AEA5-1" }, "locus": { "chromosome": "6", "start_pos": 54546397, "end_pos": 54529474, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047007.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047007.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042175.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042175.2" } ] } }, { "isoform_ac": "A0A5G2RID2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA5/entry#A0A5G2RID2-1", "sequence": { "sequence": "MRTGVIGLVLPPTFSFLEMMWRICPALAVGCTVVVLVPPASPTPLLLAQLAGELGQFPGILNVISGPAVLGLVLSSQPGVQKVAFCGAVEEGRALRRFLAGQGPELGLALGAESLLLMTEAADVDSAVEGVVDAAWSDRSLGGLRLLIQESVWDETMRRLQARMGRLRGGRGLDGAVDMGARGTAARDQAQRYVSEAQRQGAQVFQAGSVPSDSPFFPPTLISDLPPASPCTQAEVPWPLVVASPFRTAKEALALANGTPGGGSASVWSERLGQALELAYGLRMGTVWINAHGLRDPAVPTGGCKESGSSWHGGLDGLYEYLRPSGTPARLPYLSENLNYDTFGLAVPSTLPAGPETGPSPAPPYGLFVGGRFQAPGARSSRPIWDSHGKLHGYVAEGGAKDIRGAVEAAHQAAPGWVGQSPGARAALLWALAAALQRRESTLASRLERHGVELQVAKAEVELSVRRLRAWGARVQAQGCTLQVAELRGPVLRLREPLGVLAIVCPDEWPLLAFVSLLAPALAHGNTVVLVPSGACPIPALEVCQDMAALLPAGLVNVVTGDPDHLTRCLALHQDIQALWYFGSAQGSQFVEWASAGNLKPVWVNRGCPRAWDQEAEGAGPELGLRAARTKALWLPMGD", "length": 639, "header": "tr|A0A5G2RID2-1|A0A287AEA5_PIG Computationally mapped isoform of Aldehyde dehydrogenase 16 family member A1 OS=Sus scrofa OX=9823 GN=ALDH16A1 PE=1 SV=1 CANONICAL=A0A287AEA5-1" }, "locus": { "chromosome": "6", "start_pos": 54546397, "end_pos": 54529704, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089812.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089812.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071317.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071317.1" } ] } }, { "isoform_ac": "F1RHZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA5/entry#F1RHZ9-1", "sequence": { "sequence": "MAETCTGSRASEIFTTLEYGPVPESHACALAWLDTQDRLLGHYVNGKWLKPEHRSSVPCQDPITGEKLASCLQAQTEDVAEAVEAARASLENWSTLPGAFRAQYLTRLAKMIQKHQRLFWTLESLVTGRAVREIRDRDVPLAQQLLQYHAIQAHTQEEALAGWEPTGVIGLVLPPTFSFLEMMWRICPALAVGCTVVVLVPPASPTPLLLAQLAGELGQFPGILNVISGPAVLGLVLSSQPGVQKVAFCGAVEGGLRLLIQESVWDETMRRLQARMGRLRGGRGLDGAVDMGARGTAARDQAQRYVSEAQRQGAQVFQAGSVPSDSPFFPPTLISDLPPASPCTQAEVPWPLVVASPFRTAKEALALANGTPGGGSASVWSERLGQALELAYGLRMGTVWINAHGLRDPAVPTGGCKESGSSWHGGLDGLYEYLRPSGTPARLPYLSENLNYDTFGLAVPSTLPAGPETGPSPAPPYGLFVGGRFQAPGARSSRPIWDSHGKLHGYVAEGGAKDIRGAVEAAHQAAPGWVGQSPGARAALLWALAAALQRRESTLASRLERHGVELQVAKAEVELSVRRLRAWGARVQAQGCTLQVAELRGPVLRLREPLGVLAIVCPDEWPLLAFVSLLAPALAHGNTVVLVPSGACPIPALEVCQDMAALLPAGLVNVVTGDPDHLTRCLALHQDIQALWYFGSAQGSQFVEWASAGNLKPVWVNRGCPRAWDQEAEGAGPELGLRAARTKALWLPMGD", "length": 751, "header": "tr|F1RHZ9-1|A0A287AEA5_PIG Computationally mapped isoform of Aldehyde dehydrogenase 16 family member A1 OS=Sus scrofa OX=9823 GN=ALDH16A1 PE=1 SV=3 CANONICAL=A0A287AEA5-1" }, "locus": { "chromosome": "6", "start_pos": 54546397, "end_pos": 54529624, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003518.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003518.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003435.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003435.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 540, "start_aa": "Thr", "end_pos": 540, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr540", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RID2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RID2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "aldehyde dehydrogenase (NAD+) activity", "id": "GO:0004029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004029", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEA5", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA5" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor", "id": "GO:0016620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016620", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEA5", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 470, "end_pos": 472, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AEA5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 852, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AEA5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AEA5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AEA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA5" }, { "id": "PF00171", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00171" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aldehyde dehydrogenase", "eco_id": "ECO_0000259", "start_pos": 98, "end_pos": 536, "start_aa": "Trp", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 540 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 142, "end_pos": 144 }, { "start_pos": 470, "end_pos": 472 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AEA9-1", "uniprot_ac": "A0A287AEA9", "uniprot_id": "A0A287AEA9_PIG", "mass": { "chemical_mass": 18069.0, "monoisotopic_mass": 18069.0 }, "refseq": { "ac": "XP_003131634", "name": "transmembrane protein 92", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131634" }, "gene_names": [ { "name": "TMEM92", "type": "recommended", "evidence": [ { "id": "A0A287AEA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA9" } ] }, { "name": "TMEM92", "type": "synonym", "evidence": [ { "id": "XP_003131634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131634" } ] } ], "protein_names": [ { "name": "Transmembrane protein 92", "type": "synonym", "evidence": [ { "id": "A0A287AEA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA9/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 92", "type": "synonym", "evidence": [ { "id": "XP_003131634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131634" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AEA9", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM92", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA9", "locus": { "chromosome": "12", "start_pos": 26472864, "end_pos": 26452882, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037168", "url": "https://www.ensembl.org/id/ENSSSCG00000037168" } ] } } ], "crossref": [ { "id": "ENSSSCG00000037168", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037168", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515686", "url": "https://www.ncbi.nlm.nih.gov/gene/100515686", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515686", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515686", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MSQAWVT", "url": "https://omabrowser.org/oma/group/MSQAWVT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AEA9", "url": "https://www.orthodb.org/?gene=A0A287AEA9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31359", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31359", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31359:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31359:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11669", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11669", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003131634", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131634", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AEA9", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDTWVLGLVPTLLLALPAGLQQAAATCAPFHTCPKGLKCCGDTCCPEYQREPFGFFSGPFRIFVIIFLIFIPLLCICGLAKHIFRNCREPEHEPPTEHEGPPELPSIAPEERVIAPISDSPPPYSEVILKPELGLPPTEPPPPYSCRPEEYTRACRGIDNPAF", "length": 164, "header": "tr|A0A287AEA9-1|A0A287AEA9_PIG Isoform 1 of Transmembrane protein 92 OS=Sus scrofa OX=9823 GN=TMEM92 PE=4 SV=1 CANONICAL=A0A287AEA9-1" }, "isoforms": [ { "isoform_ac": "A0A287AEA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA9/entry#A0A287AEA9-1", "sequence": { "sequence": "MSDTWVLGLVPTLLLALPAGLQQAAATCAPFHTCPKGLKCCGDTCCPEYQREPFGFFSGPFRIFVIIFLIFIPLLCICGLAKHIFRNCREPEHEPPTEHEGPPELPSIAPEERVIAPISDSPPPYSEVILKPELGLPPTEPPPPYSCRPEEYTRACRGIDNPAF", "length": 164, "header": "tr|A0A287AEA9-1|A0A287AEA9_PIG Isoform 1 of Transmembrane protein 92 OS=Sus scrofa OX=9823 GN=TMEM92 PE=4 SV=1 CANONICAL=A0A287AEA9-1" }, "locus": { "chromosome": "12", "start_pos": 26472353, "end_pos": 26466722, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058588.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058588.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042180.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042180.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEA9", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515686", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515686", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B7ZWI3-1", "protein_name": "Transmembrane protein 92", "gene_name": "Tmem92", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLDTWVWGTLTLTFGLLSSLQGVSFNETANTCDILNCPKGFTCCVKECCPERKVWDPANDRFRFLVILACIIFPILFICALVSLFCPNCTELQHDVRRVDHQTPIEPPSIAPLESIWVTSLDPPPPYSQVVQMTPPTEPPPPYSLRPEGPAGQMRGRAYATL", "length": 162 }, "evidence": [ { "id": "A0A287AEA9", "url": "https://omabrowser.org/oma/group/A0A287AEA9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6UXU6-1", "protein_name": "Transmembrane protein 92", "gene_name": "TMEM92", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSQAWVPGLAPTLLFSLLAGPQKIAAKCGLILACPKGFKCCGDSCCQENELFPGPVRIFVIIFLVILSVFCICGLAKCFCRNCREPEPDSPVDCRGPLELPSIIPPERVRVSLSAPPPPYSEVILKPSLGPTPTEPPPPYSFRPEEYTGDQRGIDNPAF", "length": 159 }, "evidence": [ { "id": "A0A287AEA9", "url": "https://omabrowser.org/oma/group/A0A287AEA9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEA9", "url": "https://www.uniprot.org/uniprotkb/A0A287AEA9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AEB4-1", "uniprot_ac": "A0A287AEB4", "uniprot_id": "A0A287AEB4_PIG", "mass": { "chemical_mass": 83126.0, "monoisotopic_mass": 83126.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF544", "type": "recommended", "evidence": [ { "id": "A0A287AEB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AEB4" } ] } ], "protein_names": [ { "name": "Zinc finger protein 544", "type": "synonym", "evidence": [ { "id": "A0A287AEB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AEB4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEB4", "url": "https://www.uniprot.org/uniprotkb/A0A287AEB4#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AEB4", "url": "https://www.uniprot.org/uniprotkb/A0A287AEB4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { 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"InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KPAVICW", "url": "https://omabrowser.org/oma/group/KPAVICW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AEB4", "url": "https://www.uniprot.org/uniprotkb/A0A287AEB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEB4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESCSQQIPSQSPVSFKDVAVTFTWEEWGQLDPAQRTLYREVTLETCSHLVSLGLLLTKPDVISHLEQGEDPWKAEWGPPRDQKSALERKESPSKEDIAIEGPSHHLEVKHCVQEEGPWLVALEMQHSREQLREHQKDPQSPVVPTSERLFAQGGCYLNLSILPPTLPVRTYFLKFNSPVKKLEQNSVFINRQQGWADLRPCEDYQRAIGFCQRIYLNKPANVEMENKKPYLYTVSSDSFSYGTSLRFLHTIFSAENSDDGKDYGNIINHNLSLNEHKPMPFGESQHECDECLAQTEINDLAEAPFRCEEDCDAFHVALSFTDCGIIQTRKKPYACNQCGKSFSCCSKLVVHQRTHTGEKPYECTQCGKSFSQSYDLVVHQRTHTGEKPYECKQCGKSFTQSSKLLRHQRTHTGEKPYKCHECGKSFRWNSNLIVHQRIHTGEKPYECTHCGKSFSQSSDFVAHKRTHTGEKPYECNQCGKSFIRSTQLIRHLRIHTGEKPYKCGQCDKAFTGSSHLIEHQRSHTGEKPFECNLCGKGFTGSSHLLSHQRIHSGEKPYECNDCGKAFRQRSQLIVHQRTHTGEKPYECSHCGKAFSQRSPLIVHQRTHVGEKPYQCNMCVKAFSQRSRLTEHQRTHTGEKPYECIDCGKAFSDRSTLTKHERTHTGEKPYECSHCEKAFSQRCQLTRHQRIHTGEKPYECNESGKAFSYSTSLIQHEKTHGRETL", "length": 725, "header": "tr|A0A287AEB4-1|A0A287AEB4_PIG Isoform 1 of Zinc finger protein 544 OS=Sus scrofa OX=9823 GN=ZNF544 PE=3 SV=1 CANONICAL=A0A287AEB4-1" }, "isoforms": [ { "isoform_ac": "A0A287AEB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEB4/entry#A0A287AEB4-1", "sequence": { "sequence": "MESCSQQIPSQSPVSFKDVAVTFTWEEWGQLDPAQRTLYREVTLETCSHLVSLGLLLTKPDVISHLEQGEDPWKAEWGPPRDQKSALERKESPSKEDIAIEGPSHHLEVKHCVQEEGPWLVALEMQHSREQLREHQKDPQSPVVPTSERLFAQGGCYLNLSILPPTLPVRTYFLKFNSPVKKLEQNSVFINRQQGWADLRPCEDYQRAIGFCQRIYLNKPANVEMENKKPYLYTVSSDSFSYGTSLRFLHTIFSAENSDDGKDYGNIINHNLSLNEHKPMPFGESQHECDECLAQTEINDLAEAPFRCEEDCDAFHVALSFTDCGIIQTRKKPYACNQCGKSFSCCSKLVVHQRTHTGEKPYECTQCGKSFSQSYDLVVHQRTHTGEKPYECKQCGKSFTQSSKLLRHQRTHTGEKPYKCHECGKSFRWNSNLIVHQRIHTGEKPYECTHCGKSFSQSSDFVAHKRTHTGEKPYECNQCGKSFIRSTQLIRHLRIHTGEKPYKCGQCDKAFTGSSHLIEHQRSHTGEKPFECNLCGKGFTGSSHLLSHQRIHSGEKPYECNDCGKAFRQRSQLIVHQRTHTGEKPYECSHCGKAFSQRSPLIVHQRTHVGEKPYQCNMCVKAFSQRSRLTEHQRTHTGEKPYECIDCGKAFSDRSTLTKHERTHTGEKPYECSHCEKAFSQRCQLTRHQRIHTGEKPYECNESGKAFSYSTSLIQHEKTHGRETL", "length": 725, "header": "tr|A0A287AEB4-1|A0A287AEB4_PIG Isoform 1 of Zinc finger protein 544 OS=Sus scrofa OX=9823 GN=ZNF544 PE=3 SV=1 CANONICAL=A0A287AEB4-1" }, "locus": { "chromosome": "6", "start_pos": 62882041, "end_pos": 62873729, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058736.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058736.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042158.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042158.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEB4", "url": "https://www.uniprot.org/uniprotkb/A0A287AEB4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q6NX49-1", "protein_name": "Zinc finger protein 544", "gene_name": "ZNF544", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AEG1-1", "uniprot_ac": "A0A287AEG1", "uniprot_id": "A0A287AEG1_PIG", "mass": { "chemical_mass": 850364.0, "monoisotopic_mass": 850364.0 }, "refseq": {}, "gene_names": [ { "name": "MACF1", "type": "recommended", "evidence": [ { "id": "A0A287AEG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AEG1" } ] } ], "protein_names": [ { "name": "Microtubule actin crosslinking factor 1", "type": "synonym", "evidence": [ { "id": "A0A287AEG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AEG1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AEG1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEG1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MACF1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEG1", "locus": { "chromosome": "6", "start_pos": 95318281, "end_pos": 94960364, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003654", "url": "https://www.ensembl.org/id/ENSSSCG00000003654" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003654", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003654", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00176", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00176", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21188", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21188", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21240", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21240", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001101", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001101", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002017", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002017", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036534", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036534", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041573", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041573", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041615", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041615", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049538", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049538", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23169", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23169", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23169:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23169:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00435", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00435", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02187", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02187", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17902", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17902", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21019", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21019", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21020", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21020", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21097", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21097", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27015", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27015", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AEG1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQC9", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQC9-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQC9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLLDSSYLPPAIFILTHILGIAGVLYWKRYARGRADERDRVQKKTFTKWVNKHLMKVRKHINDLYEDLRDGHNLISLLEVLSGIKLEPAGLKTLRLVSMPSWRHTHSEEQEEEDDDDVPREKGRMRFHRLQNVQIALDFLKQRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQISDIYISGESGDMSAKEKLLLWTQKVTAGYTGIKCTNFSSCWSDGKMFNALIHRYRPDLVDMERVQIQSNRENLEQAFEVAERLGVTRLLDAEDVDVPSPDEKSVITYVSSIYDAFPKVPEGGEGISATEVDSRWQEYQSRVDSLIPWIKQHTILMSDKSFPQNPVELKALYNQYIHFKETEILAKEREKGRIEELYKLLEVWIEFGRIKLPQGYHPNDVEEEWGKLIIEMLEREKSLRPAVERLELLLQIANKIQNGALNCEEKLTLAKNTLQADAAHLESGQPVQCESDVIMYIQECEGLIRQLQVDLQILRDENYYQLEELAFRVMRLQDELVTLRLECTNLYRKGHFTSLELVPPSTLTTTHLKAEPLTKGTHSSASWFRKPMTRAELVSISSSEDEGNLRFVYELLSWVEEMQMKLERAEWGNDLPSVELQLETQQHIHASVEELGSSVKEARLYEGKMSQNFHTSYVETLGKLETQYCKLKETSSFRMNLQSLHKFVSRATAELIWLNEKEEEELAYDWSDNNPNIPAKKNYFSELTMELEEKQDVFRSLQDTAELLSLENHPAKQTVEAYSAAVQSQLQWMKQLCLCVEQHVKENAAYFQFFSDARDLESFLRNLQDSIKRKYSCDHSTSLSRLEDLLQDSMDEKEQLIQSKSSVASLVGRSKAIVQLKPRSPDHVLKSTISVKAICDYRQIEITICKNDECVLEDNSQRTKWKVISPTGNEAMVPSVCFLIPPPNKDAIEMASRVEQSYQKVMALWHQLHVNTKSLISWNYLRKDLDLVKTWNLEKLRSSAPGECHQVMKNLQTHYEDFLQESRDSALFSVADRLRLEEEVEACKTHFQHLMKSMENEDKEETVAKTYISELKNIRLRLEECEQRLVRRIQSPASSRTDKDARQDNALRIAEQEHTQEDLQQLRSDLDAVSIKCNSFLHQSPTGSSVPTLRSELNLLVEKMEHVYGLSTVYLNKLKTIDVIARSIQDAELLVKGYEIKLSQEEAVPADLSALESHRSTLQHWLSDAKNKNSMFSVLDEEIAKAKIVAEQLSRLTPERNLDLERCQEKGSQLQERWHRVIAQLETRQSELESIQEVLGDYRACHGTLIKWIEETTAQQEMMKPGQAEDSRVLSEQLSQQTELFAEIERNQTKLDQCQKFSQQYSTIVKDYELQLMTYKAFVESQQKSPGKRRRMLSSSDAITQEFMDLRTRYTALVTLTTQHVKYISDALRRLEEEEKVVEEEKQEHVEKVKELLGWVSTLVKNTQDKATSPQTKESTDIEKAILEQQVLAEELTTKREQVSETIKTSQIFLAKHGHKLSEKEKEQISEQLNALNKAYHDLCDGSANQLQQLQSQLAQQTEQKGCRAVAGVIDLGTVEIFPIYRAMQKGLIDQDTGLVLLESQVIMSGLIAPETSEKLSLEEGLAQNLINSQMYQQLRELQDALSLISRLTENKGLLSVVEAIEKKIISEKVGLKILEAHLATGGFSLPPDGNCISLEEAFHQGLISARLHSELESHLRSSKNLIDPNTAEKIGLLDLMQRCIVQQESGLKLLPVKQLAGGMVSLRSGRKVSIFRAVQEGLIDRQVTLRLLEAQLFAGGIVDPRTGHRLTVEEAVRHNLIDQDMACALLIRQLQTGGIIDTVTGHRLTVDEAVSSDLVAAKIALVILESLWSFMGLLWPESGEILPITDALEQGIVSTELAHKILSDRQHIKALFLPATTEIWSWRKAIENGILDKDLANNLKSICIPDVMPHMQLADSLERSKLNGNPGAAGLPCSKGQTEGIASHDEKLLFQLMTHSYINVRNGQRLLLMDSELIEALTARGDQAGRTEVFGIGHQRLETPEKLQELVDVKITEGYDGLTVRPREFQFSSQNEDLNQASCTEARGKKTIVETEGSAVESPEKDLFVRQQKVKNPNGDTLKVIDKVKSEFKRHQKGTKKEDQIEVSPRENVSRGFLLREPSQEAGDVTLVEDKDAFSVGSPEEERQTLIKASFMCQKEEEALGETGRPLVKPQSKKSQLQVEKTLVLESERKTEKDRNIHSLGKKKASVTTSVGRDDHQQSPESHSMADGRMAISEKTAEEANGSEASLSRSHPSELPEEATLNILSAQLLDGGIFHEQTGQKLLLHEAIAQGLVPSHTAVKLMGKLNMFQGFFDSQTHESLTTEEVIDEGLMDEKLLHNVLMADKTISGVLDPRTHTLCSVKEAVAFGLLDTQTATSILEGQVVTGGIIDLKRGKKISVTLASNLGLVDSASQTELINLEKASKGRDADKTVRERLISLQMETTGMMNPDSKAPLTVAQSIARGLLERDEAIRLLTKQVVDGGIIHHISGMRLSVDNAFKHGIIDEDLAKQLKKVENLSLHQFSHPETKETISLPEAIKLDLVTPDLKREIQEIQALTGSFVDLVSGRTLTLAEAKKEGLLTNKAILSSGMLNGIIDPENYRIVPYSELVKKCKIDIESGQRYLEVIPFSNIKDGASDKILTLPQAVKLGKVDFAVTLKVLEAQANTGGIIDTATGRQLTLASALEQKLVDENMVRIIASHQVLDGGIIDIFNGQRVTLKEAVEKRLISPELATVIQIDTSEPSGLQAQIEKQDGIEVCALKKEFLRKEMLIACSPTAEMSCGKGESEKLFQIESQSAQKKVQVRVSNEEQAKESQEVSLKELECKDQDRKRSSPEAKEAVSIIIPSNGNSNSLGQDSATHPLSEICDFKPKEVACNTMGKKANKEQGKIVAQTESISHMKEFVSGLDSKGRRGNQGGIISEVQESDGDTSGKLLSQQVMQKAMNTREKSKRQKKEMTVEESVKTCQPAVLPEEKLNQETAIRDDHDSNIESQPVKITVSEKGKVADRKPGLSVVCEAEDSSRMTPNGISVRNEDALTFFNSNQASEGAAKNLSLSLTSKPEENLPQEITVIVQSELLSSLTAKPKGLHYQESVRKAQVADTSHFPADRSFQGTTSQETKYYQDSCVTLTRETKDMTFSSNECKEKSYQEVPFDSTRAVKLEEIRVDSKEVSQHLEFPDGKDLPPEDNKSDHEHCRFLESTIVTTQEIKGEKIVKMSNLLVTAEAGSFEGIEMQGAPRISVSLLPEKPSKDVSRKETTEQQDATISLVPEISEEEMVPLTSCPVMKTGEKTPQERLRESPDRATTVSSQNVFNRQLCLEHDEKLVSYLSLLRDIEMRTKQIQPLELNLAELQDLLCQAKALDRELKDLSTVVSQELECVNQIIISQPQEVPAQLLKALEKDAKNLQKSLSSVSDTWGSRLLHLQTAVEVKKTIVLNQYKQLEGNLQDLRAWIGDTYLILKSKEYDSETDASSLNHYLQQCEDLKQPMAERKAHLDALAFDIQFFISEHAQDLSPQQNRQMLRLLNELQRSFQSLVEQTAAQMDALQGHLQQMEQAAQVKTLQKQQNSCHQKLEDLCSWVGQAERALAGHQDRATQQDLSALQQNQSDLKDLQDDIQNRATSFASAVKDIEGFLEENQAKLSPHELTALREKLHQAKEQYEALQERTKVVQKELEEVVTSALQQETEKSKAAKELAENRSKIDALLDWVTSVGSSGGRMEEPSGGYLGKGALDTTDGHTGVNQAPEKLDKQCEKMKAYHQELLSQQQNFILATQSAQAFLDQHGHNLTPQEQQMLQEKLGELKEQYATSLARSEAELKQVQTLRDELQKFLQDHQEFENWLERSEKELENMRKGGSSPEALPALLKRQGSFSEDVISHKGDLRFVTISGQKVLDTENSLEKGKEPSATGTLVKDKLKDATERYTALHSECARLGAHLNTLLGQYQQFQSSADSLQAWMKACEASVEKLLSDTIASDPGVLQQQLATTKQLQEELAEHEVPVEKLQKVAHDLMEIEGEPAPDCKHVQETTDSMLSHFQSLSSRLAERSALLQKAIAQSQSVQESLDSLLQSIREVENNLEEEQVASLSSGVIQEALATNMKLKQDIGRQKSSLEATREMVTRFMETADSTTAAVLQGKLAEVSHRFEQLCLQQQEKESSLKKLLPQAEMFEHLSDKLQQFMENKSRMLASGNQPDQDIAHFFQQIQELNLEMEDQQENLDTLEHLVTDLSSCGFALDLSQHQNRVQNLKKDFTELQKTVKEREEDASSCQEQLDEFRKLVRTFQKWLKETEGTIPPTETFMSTKELEKQIEHLKGLLDEWASKGTLVEEINCKGTSLENLIMDITAPDSQAKTGSILPPVGSSVGSVNGYHTCKDLTEIQCDMSDVNLKYEKLGEVLRERQESLQAVLSRVQEVQKEASSVLQWLESKEEVLKGLDASSSPTKTETVRAQAESNKAFLAELEQNSPKVQNVKEALTALLMTYPNSQEAENWKKMQEELNSRWERATEVTMARQRQLEESASHLACFQAAESQLRPWLMEKELMMGVLGPLSIDPNMLNAQKQQVQFMLKEFEARRQQHEQLNEAAQGILTGPGEVSPSSSQVQKELQSINQKWIELTNKLNSRSSQIDQAIVKSTQYQELLQDLSEKVKAVGQRLSGQSAISTQPEAVKQQLEETSEIRSDVEQLDHEIKEAQALCDELSVLIGEQYLKDELKKRLETVALPLQGLEDLAADRMNRLQAALASTQQFQQMFDELRSWLDDKQSQQVKNCPISAKLERLQSQLQENEEFQKSLNQHSGSYEVIVAEGESLLLSVPPGEEKKTLQNQLVELKSHWEELSKKTADRQSRLKDCLQKAQKYQWHVEDLVPWIEDCKAKISDLRVTLDPVQLESSLLRSKAMLSEVEKRRSLLEILNSAADILINSSETDEDDIRDEKAGINQNMDSITEELQAKTGSLEEMTQRLKEFQESFKNIEKKVEGAKHQLEIFDALGSQACSNKNLEKLRAQQEVLQSLEPQVDYLRNFTRGLVEDAPDGSDASQLLRQAEVTQQDFLEVKQRVNSGCMVMENKLEGIGQFHCRVREMFSQLADLDDELDCMGAIGRDTDSLQSQIEDVRLFLSKIQALKLDIEASEAECRQMLEEEGTLDLLGLKRELEALNKQCGKLMERSKARQEQLELTLGRVEDFYRKLKALNDMTTAAEEGEALQWVVGTEVDVINQQLADFKMFQKEQVDPLQMKLQQVNGLGQGLVQSAGKNCDVQGLEHDMEEINTRWNTLNKKVAQRIAQLQEALLHCGKFQDALEPLLSWLADTEELIANQKPPSAEYKVVKAQIQEQKLLQRLLDDRKATVDMLQAEGGRIAQSAELADREKITGQLESLESRWTGLLSKAAARQKQLEDILVLAKQFHETAEPISDFLSVTEKKLANSEPVGTQTAKIQQQIIRHKALEEEIDSHAADVHQAVKIGQSLSSLTCRAEQGVLSEKLDSLQARFNEIQDRCCRKAALLEQALSNARLFGEDEVEVLNWLAEVEDKLSTVFVKDYRQDVLQKQHADHLALNEEIVNRKKNVDQAIKNGQALLKQTTGEEVLLIQEKLDGIKTRYADITVTSSKALRTLEQARQLATKFQSTYEELTGWLREVEEELAASGGQSPTGEQIPQFQQRQKELKKEVMEHRLVLDTVNEVSHALLELVPWRAREGLDKLVSDANEQYKLVSDTVGQRVDEIDAAIQRSQQYEQAADAELAWVAETKRKLMALGPIRLEQDQTTAQLQVQKAFSIDIIRHKDSMDELFSHRGEIFGTCGEEQKALLQEKTESLIQQYEAISLLNSERYARLERAQVLVNQFWETYEELSPWIEETRGLIAQLPPPAIDHEQLRHQQEEMRQLRESIAEHKPHIDKLLKIGPQLKELNPEEGEMVEEKYQKAENTYAQIKEEVRQRALALDEAVSQSAQFHDKIEPMLETLENLSSRLRMPPLIPAEVDKIRECISDNKSATVELEKLQPSFEALKRRGEELIGRSQGADKDLAAKEIQDKLDQMVFFWEDIKARAEEREIKFLDVLELAEKFWYDMAALLTTIRDTQDIVHDLESPGIDPSIIKQQVEAAETIKEETDGLHEELEFIRILGADLIFACGETEKPEVKKSIDEMNNAWENLNKTWRERLEKLEDAMQAAVQYQDTLQAMFDWLDNTVIKLCTMPPVGTDLNTVKDQLNEMKEFKVEVYQQQIEMEKLNHQGELMLKKATDETDRDIIREPLTELKHLWENLGEKIAHRQHKLEGALLALGQFQHALEELMSWLTHTEELLDAQRPISGDPKVIEVELAKHHVLKNDVLAHQATVETVNKAGNELLESSAGDDASSLRSRLETMNQCWESVLQKTEEREQQLQSTLQQAQGFHSEIEDFLLELTRMETQLSASKPTGGLPETAREQLDTHMELYSQLKAKEETYNQLLDKGRLMLLSRDDSGSGSKTEQSVALLEQKWHVVSSKMEERKSKLEEALNLATEFQNSLQEFINWLTLAEQSLNIACPPSLILNTVLSQIEEHKVFANEVNAHRDQIIELDQTGNQLKFLSQKQDVVLIKNLLVSVQSRWEKVVQRSIERGRSLDDARKRAKQFHEAWKKLIDWLEDAESHLDSELEISNDPDKIKLQLSKHKEFQKTLGGKQPVYDTTIRTGRALKEKTLLPDDTQKLDNLLGEVRDKWDTVCGKSVERQHKLEEALLFSGQFMDALQALVDWLYKVEPQLAEDQPVHGDLDLVMNLMDAHKVFQKELGKRTGTVQVLKRSGRELIENSRDDTTWVKGQLQELSTRWDTVCKLSVSKQSRLEQALKQAEEFRDTIHMLLEWLSEAEQTLRFRGALPDDTEALQSLIDTHKEFMKKVEEKRVDVTSAVAMGEVILAVCHPDCITTIKHWITIIRARFEEVLTWAKQHQQRLEAALSELVANAELLEELLAWIQWAETTLIQRDQEPIPQNIDRVKALIAEHQTFMEEMTCKQPDVDRVTKTYKRKIIEPAHAPFMEKSRGGSRKSLSQPTPPPMPILSQSEAKNPRINQLSARWQQVWLLALERQRKLNDALDRLEELKEFANFDFDVWRKKYMRWMNHKKSRVMDFFRRIDKDQDGKITRQEFIDGILASKFPTTKLEMTAVADIFDRDGDGYIDYYEFVAALHPNKDAYRPTDADKIEDEVTRQVAQCKCAKRFQVEQIGENKYRFFLGNQFGDSQQLRLVRILRSTVMVRVGGGWMALDEFLVKNDPCRVHHPGSKIKRSDSSSSISSQSPIARGRTNIELREKFILPEGASQGMTPFRSRGRRSKPSSRAASPTRSSSSASQSNHSCTSMPSSPATPASGTKTPLQFSRCYDKPWLVNSKAVTPVRDSHCPDLQLPSPEVIPSTGSKLKRPTPAFHSSRTSLAGDTSNSSSPASTGAKTNRADPKKSASRPGSRAGSRAGSRASSRRGSDASDFDLLETQSACSDTSESSAAGGQGTSRRGLNKPSKIPTMSKKTTTASPRTPGPKR", "length": 7516, "header": "tr|A0A287AEG1-1|A0A287AEG1_PIG Isoform 1 of Microtubule actin crosslinking factor 1 OS=Sus scrofa OX=9823 GN=MACF1 PE=4 SV=3 CANONICAL=A0A287AEG1-1" }, "isoforms": [ { "isoform_ac": "A0A287AEG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEG1/entry#A0A287AEG1-1", "sequence": { "sequence": "MPLLDSSYLPPAIFILTHILGIAGVLYWKRYARGRADERDRVQKKTFTKWVNKHLMKVRKHINDLYEDLRDGHNLISLLEVLSGIKLEPAGLKTLRLVSMPSWRHTHSEEQEEEDDDDVPREKGRMRFHRLQNVQIALDFLKQRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQISDIYISGESGDMSAKEKLLLWTQKVTAGYTGIKCTNFSSCWSDGKMFNALIHRYRPDLVDMERVQIQSNRENLEQAFEVAERLGVTRLLDAEDVDVPSPDEKSVITYVSSIYDAFPKVPEGGEGISATEVDSRWQEYQSRVDSLIPWIKQHTILMSDKSFPQNPVELKALYNQYIHFKETEILAKEREKGRIEELYKLLEVWIEFGRIKLPQGYHPNDVEEEWGKLIIEMLEREKSLRPAVERLELLLQIANKIQNGALNCEEKLTLAKNTLQADAAHLESGQPVQCESDVIMYIQECEGLIRQLQVDLQILRDENYYQLEELAFRVMRLQDELVTLRLECTNLYRKGHFTSLELVPPSTLTTTHLKAEPLTKGTHSSASWFRKPMTRAELVSISSSEDEGNLRFVYELLSWVEEMQMKLERAEWGNDLPSVELQLETQQHIHASVEELGSSVKEARLYEGKMSQNFHTSYVETLGKLETQYCKLKETSSFRMNLQSLHKFVSRATAELIWLNEKEEEELAYDWSDNNPNIPAKKNYFSELTMELEEKQDVFRSLQDTAELLSLENHPAKQTVEAYSAAVQSQLQWMKQLCLCVEQHVKENAAYFQFFSDARDLESFLRNLQDSIKRKYSCDHSTSLSRLEDLLQDSMDEKEQLIQSKSSVASLVGRSKAIVQLKPRSPDHVLKSTISVKAICDYRQIEITICKNDECVLEDNSQRTKWKVISPTGNEAMVPSVCFLIPPPNKDAIEMASRVEQSYQKVMALWHQLHVNTKSLISWNYLRKDLDLVKTWNLEKLRSSAPGECHQVMKNLQTHYEDFLQESRDSALFSVADRLRLEEEVEACKTHFQHLMKSMENEDKEETVAKTYISELKNIRLRLEECEQRLVRRIQSPASSRTDKDARQDNALRIAEQEHTQEDLQQLRSDLDAVSIKCNSFLHQSPTGSSVPTLRSELNLLVEKMEHVYGLSTVYLNKLKTIDVIARSIQDAELLVKGYEIKLSQEEAVPADLSALESHRSTLQHWLSDAKNKNSMFSVLDEEIAKAKIVAEQLSRLTPERNLDLERCQEKGSQLQERWHRVIAQLETRQSELESIQEVLGDYRACHGTLIKWIEETTAQQEMMKPGQAEDSRVLSEQLSQQTELFAEIERNQTKLDQCQKFSQQYSTIVKDYELQLMTYKAFVESQQKSPGKRRRMLSSSDAITQEFMDLRTRYTALVTLTTQHVKYISDALRRLEEEEKVVEEEKQEHVEKVKELLGWVSTLVKNTQDKATSPQTKESTDIEKAILEQQVLAEELTTKREQVSETIKTSQIFLAKHGHKLSEKEKEQISEQLNALNKAYHDLCDGSANQLQQLQSQLAQQTEQKGCRAVAGVIDLGTVEIFPIYRAMQKGLIDQDTGLVLLESQVIMSGLIAPETSEKLSLEEGLAQNLINSQMYQQLRELQDALSLISRLTENKGLLSVVEAIEKKIISEKVGLKILEAHLATGGFSLPPDGNCISLEEAFHQGLISARLHSELESHLRSSKNLIDPNTAEKIGLLDLMQRCIVQQESGLKLLPVKQLAGGMVSLRSGRKVSIFRAVQEGLIDRQVTLRLLEAQLFAGGIVDPRTGHRLTVEEAVRHNLIDQDMACALLIRQLQTGGIIDTVTGHRLTVDEAVSSDLVAAKIALVILESLWSFMGLLWPESGEILPITDALEQGIVSTELAHKILSDRQHIKALFLPATTEIWSWRKAIENGILDKDLANNLKSICIPDVMPHMQLADSLERSKLNGNPGAAGLPCSKGQTEGIASHDEKLLFQLMTHSYINVRNGQRLLLMDSELIEALTARGDQAGRTEVFGIGHQRLETPEKLQELVDVKITEGYDGLTVRPREFQFSSQNEDLNQASCTEARGKKTIVETEGSAVESPEKDLFVRQQKVKNPNGDTLKVIDKVKSEFKRHQKGTKKEDQIEVSPRENVSRGFLLREPSQEAGDVTLVEDKDAFSVGSPEEERQTLIKASFMCQKEEEALGETGRPLVKPQSKKSQLQVEKTLVLESERKTEKDRNIHSLGKKKASVTTSVGRDDHQQSPESHSMADGRMAISEKTAEEANGSEASLSRSHPSELPEEATLNILSAQLLDGGIFHEQTGQKLLLHEAIAQGLVPSHTAVKLMGKLNMFQGFFDSQTHESLTTEEVIDEGLMDEKLLHNVLMADKTISGVLDPRTHTLCSVKEAVAFGLLDTQTATSILEGQVVTGGIIDLKRGKKISVTLASNLGLVDSASQTELINLEKASKGRDADKTVRERLISLQMETTGMMNPDSKAPLTVAQSIARGLLERDEAIRLLTKQVVDGGIIHHISGMRLSVDNAFKHGIIDEDLAKQLKKVENLSLHQFSHPETKETISLPEAIKLDLVTPDLKREIQEIQALTGSFVDLVSGRTLTLAEAKKEGLLTNKAILSSGMLNGIIDPENYRIVPYSELVKKCKIDIESGQRYLEVIPFSNIKDGASDKILTLPQAVKLGKVDFAVTLKVLEAQANTGGIIDTATGRQLTLASALEQKLVDENMVRIIASHQVLDGGIIDIFNGQRVTLKEAVEKRLISPELATVIQIDTSEPSGLQAQIEKQDGIEVCALKKEFLRKEMLIACSPTAEMSCGKGESEKLFQIESQSAQKKVQVRVSNEEQAKESQEVSLKELECKDQDRKRSSPEAKEAVSIIIPSNGNSNSLGQDSATHPLSEICDFKPKEVACNTMGKKANKEQGKIVAQTESISHMKEFVSGLDSKGRRGNQGGIISEVQESDGDTSGKLLSQQVMQKAMNTREKSKRQKKEMTVEESVKTCQPAVLPEEKLNQETAIRDDHDSNIESQPVKITVSEKGKVADRKPGLSVVCEAEDSSRMTPNGISVRNEDALTFFNSNQASEGAAKNLSLSLTSKPEENLPQEITVIVQSELLSSLTAKPKGLHYQESVRKAQVADTSHFPADRSFQGTTSQETKYYQDSCVTLTRETKDMTFSSNECKEKSYQEVPFDSTRAVKLEEIRVDSKEVSQHLEFPDGKDLPPEDNKSDHEHCRFLESTIVTTQEIKGEKIVKMSNLLVTAEAGSFEGIEMQGAPRISVSLLPEKPSKDVSRKETTEQQDATISLVPEISEEEMVPLTSCPVMKTGEKTPQERLRESPDRATTVSSQNVFNRQLCLEHDEKLVSYLSLLRDIEMRTKQIQPLELNLAELQDLLCQAKALDRELKDLSTVVSQELECVNQIIISQPQEVPAQLLKALEKDAKNLQKSLSSVSDTWGSRLLHLQTAVEVKKTIVLNQYKQLEGNLQDLRAWIGDTYLILKSKEYDSETDASSLNHYLQQCEDLKQPMAERKAHLDALAFDIQFFISEHAQDLSPQQNRQMLRLLNELQRSFQSLVEQTAAQMDALQGHLQQMEQAAQVKTLQKQQNSCHQKLEDLCSWVGQAERALAGHQDRATQQDLSALQQNQSDLKDLQDDIQNRATSFASAVKDIEGFLEENQAKLSPHELTALREKLHQAKEQYEALQERTKVVQKELEEVVTSALQQETEKSKAAKELAENRSKIDALLDWVTSVGSSGGRMEEPSGGYLGKGALDTTDGHTGVNQAPEKLDKQCEKMKAYHQELLSQQQNFILATQSAQAFLDQHGHNLTPQEQQMLQEKLGELKEQYATSLARSEAELKQVQTLRDELQKFLQDHQEFENWLERSEKELENMRKGGSSPEALPALLKRQGSFSEDVISHKGDLRFVTISGQKVLDTENSLEKGKEPSATGTLVKDKLKDATERYTALHSECARLGAHLNTLLGQYQQFQSSADSLQAWMKACEASVEKLLSDTIASDPGVLQQQLATTKQLQEELAEHEVPVEKLQKVAHDLMEIEGEPAPDCKHVQETTDSMLSHFQSLSSRLAERSALLQKAIAQSQSVQESLDSLLQSIREVENNLEEEQVASLSSGVIQEALATNMKLKQDIGRQKSSLEATREMVTRFMETADSTTAAVLQGKLAEVSHRFEQLCLQQQEKESSLKKLLPQAEMFEHLSDKLQQFMENKSRMLASGNQPDQDIAHFFQQIQELNLEMEDQQENLDTLEHLVTDLSSCGFALDLSQHQNRVQNLKKDFTELQKTVKEREEDASSCQEQLDEFRKLVRTFQKWLKETEGTIPPTETFMSTKELEKQIEHLKGLLDEWASKGTLVEEINCKGTSLENLIMDITAPDSQAKTGSILPPVGSSVGSVNGYHTCKDLTEIQCDMSDVNLKYEKLGEVLRERQESLQAVLSRVQEVQKEASSVLQWLESKEEVLKGLDASSSPTKTETVRAQAESNKAFLAELEQNSPKVQNVKEALTALLMTYPNSQEAENWKKMQEELNSRWERATEVTMARQRQLEESASHLACFQAAESQLRPWLMEKELMMGVLGPLSIDPNMLNAQKQQVQFMLKEFEARRQQHEQLNEAAQGILTGPGEVSPSSSQVQKELQSINQKWIELTNKLNSRSSQIDQAIVKSTQYQELLQDLSEKVKAVGQRLSGQSAISTQPEAVKQQLEETSEIRSDVEQLDHEIKEAQALCDELSVLIGEQYLKDELKKRLETVALPLQGLEDLAADRMNRLQAALASTQQFQQMFDELRSWLDDKQSQQVKNCPISAKLERLQSQLQENEEFQKSLNQHSGSYEVIVAEGESLLLSVPPGEEKKTLQNQLVELKSHWEELSKKTADRQSRLKDCLQKAQKYQWHVEDLVPWIEDCKAKISDLRVTLDPVQLESSLLRSKAMLSEVEKRRSLLEILNSAADILINSSETDEDDIRDEKAGINQNMDSITEELQAKTGSLEEMTQRLKEFQESFKNIEKKVEGAKHQLEIFDALGSQACSNKNLEKLRAQQEVLQSLEPQVDYLRNFTRGLVEDAPDGSDASQLLRQAEVTQQDFLEVKQRVNSGCMVMENKLEGIGQFHCRVREMFSQLADLDDELDCMGAIGRDTDSLQSQIEDVRLFLSKIQALKLDIEASEAECRQMLEEEGTLDLLGLKRELEALNKQCGKLMERSKARQEQLELTLGRVEDFYRKLKALNDMTTAAEEGEALQWVVGTEVDVINQQLADFKMFQKEQVDPLQMKLQQVNGLGQGLVQSAGKNCDVQGLEHDMEEINTRWNTLNKKVAQRIAQLQEALLHCGKFQDALEPLLSWLADTEELIANQKPPSAEYKVVKAQIQEQKLLQRLLDDRKATVDMLQAEGGRIAQSAELADREKITGQLESLESRWTGLLSKAAARQKQLEDILVLAKQFHETAEPISDFLSVTEKKLANSEPVGTQTAKIQQQIIRHKALEEEIDSHAADVHQAVKIGQSLSSLTCRAEQGVLSEKLDSLQARFNEIQDRCCRKAALLEQALSNARLFGEDEVEVLNWLAEVEDKLSTVFVKDYRQDVLQKQHADHLALNEEIVNRKKNVDQAIKNGQALLKQTTGEEVLLIQEKLDGIKTRYADITVTSSKALRTLEQARQLATKFQSTYEELTGWLREVEEELAASGGQSPTGEQIPQFQQRQKELKKEVMEHRLVLDTVNEVSHALLELVPWRAREGLDKLVSDANEQYKLVSDTVGQRVDEIDAAIQRSQQYEQAADAELAWVAETKRKLMALGPIRLEQDQTTAQLQVQKAFSIDIIRHKDSMDELFSHRGEIFGTCGEEQKALLQEKTESLIQQYEAISLLNSERYARLERAQVLVNQFWETYEELSPWIEETRGLIAQLPPPAIDHEQLRHQQEEMRQLRESIAEHKPHIDKLLKIGPQLKELNPEEGEMVEEKYQKAENTYAQIKEEVRQRALALDEAVSQSAQFHDKIEPMLETLENLSSRLRMPPLIPAEVDKIRECISDNKSATVELEKLQPSFEALKRRGEELIGRSQGADKDLAAKEIQDKLDQMVFFWEDIKARAEEREIKFLDVLELAEKFWYDMAALLTTIRDTQDIVHDLESPGIDPSIIKQQVEAAETIKEETDGLHEELEFIRILGADLIFACGETEKPEVKKSIDEMNNAWENLNKTWRERLEKLEDAMQAAVQYQDTLQAMFDWLDNTVIKLCTMPPVGTDLNTVKDQLNEMKEFKVEVYQQQIEMEKLNHQGELMLKKATDETDRDIIREPLTELKHLWENLGEKIAHRQHKLEGALLALGQFQHALEELMSWLTHTEELLDAQRPISGDPKVIEVELAKHHVLKNDVLAHQATVETVNKAGNELLESSAGDDASSLRSRLETMNQCWESVLQKTEEREQQLQSTLQQAQGFHSEIEDFLLELTRMETQLSASKPTGGLPETAREQLDTHMELYSQLKAKEETYNQLLDKGRLMLLSRDDSGSGSKTEQSVALLEQKWHVVSSKMEERKSKLEEALNLATEFQNSLQEFINWLTLAEQSLNIACPPSLILNTVLSQIEEHKVFANEVNAHRDQIIELDQTGNQLKFLSQKQDVVLIKNLLVSVQSRWEKVVQRSIERGRSLDDARKRAKQFHEAWKKLIDWLEDAESHLDSELEISNDPDKIKLQLSKHKEFQKTLGGKQPVYDTTIRTGRALKEKTLLPDDTQKLDNLLGEVRDKWDTVCGKSVERQHKLEEALLFSGQFMDALQALVDWLYKVEPQLAEDQPVHGDLDLVMNLMDAHKVFQKELGKRTGTVQVLKRSGRELIENSRDDTTWVKGQLQELSTRWDTVCKLSVSKQSRLEQALKQAEEFRDTIHMLLEWLSEAEQTLRFRGALPDDTEALQSLIDTHKEFMKKVEEKRVDVTSAVAMGEVILAVCHPDCITTIKHWITIIRARFEEVLTWAKQHQQRLEAALSELVANAELLEELLAWIQWAETTLIQRDQEPIPQNIDRVKALIAEHQTFMEEMTCKQPDVDRVTKTYKRKIIEPAHAPFMEKSRGGSRKSLSQPTPPPMPILSQSEAKNPRINQLSARWQQVWLLALERQRKLNDALDRLEELKEFANFDFDVWRKKYMRWMNHKKSRVMDFFRRIDKDQDGKITRQEFIDGILASKFPTTKLEMTAVADIFDRDGDGYIDYYEFVAALHPNKDAYRPTDADKIEDEVTRQVAQCKCAKRFQVEQIGENKYRFFLGNQFGDSQQLRLVRILRSTVMVRVGGGWMALDEFLVKNDPCRVHHPGSKIKRSDSSSSISSQSPIARGRTNIELREKFILPEGASQGMTPFRSRGRRSKPSSRAASPTRSSSSASQSNHSCTSMPSSPATPASGTKTPLQFSRCYDKPWLVNSKAVTPVRDSHCPDLQLPSPEVIPSTGSKLKRPTPAFHSSRTSLAGDTSNSSSPASTGAKTNRADPKKSASRPGSRAGSRAGSRASSRRGSDASDFDLLETQSACSDTSESSAAGGQGTSRRGLNKPSKIPTMSKKTTTASPRTPGPKR", "length": 7516, "header": "tr|A0A287AEG1-1|A0A287AEG1_PIG Isoform 1 of Microtubule actin crosslinking factor 1 OS=Sus scrofa OX=9823 GN=MACF1 PE=4 SV=3 CANONICAL=A0A287AEG1-1" }, "locus": { "chromosome": "6", "start_pos": 95316867, "end_pos": 95070798, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040898.4", "url": "https://www.ensembl.org/id/ENSSSCT00000040898.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042274.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042274.3" } ] } }, { "isoform_ac": "A0ABB5UQC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEG1/entry#A0ABB5UQC9-1", "sequence": { "sequence": "MSSSDEETLSERSCRSERSCRSERSYRSERSGSLSPCPPGDTLPWNLPLHEQKKRKSQDSVLDPAERAVVRVADERDRVQKKTFTKWVNKHLMKVRKHINDLYEDLRDGHNLISLLEVLSGIKLPREKGRMRFHRLQNVQIALDFLKQRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQISDIYISGESGDMSAKEKLLLWTQKVTAGYTGIKCTNFSSCWSDGKMFNALIHRYRPDLVDMERVQIQSNRENLEQAFEVAERLGVTRLLDAEDVDVPSPDEKSVITYVSSIYDAFPKVPEGGEGISATEVDSRWQEYQSRVDSLIPWIKQHTILMSDKSFPQNPVELKALYNQYIHFKETEILAKEREKGRIEELYKLLEVWIEFGRIKLPQGYHPNDVEEEWGKLIIEMLEREKSLRPAVERLELLLQIANKIQNGALNCEEKLTLAKNTLQADAAHLESGQPVQCESDVIMYIQECEGLIRQLQVDLQILRDENYYQLEELAFRVMRLQDELVTLRLECTNLYRKGHFTSLELVPPSTLTTTHLKAEPLTKGTHSSASWFRKPMTRAELVSISSSEDEGNLRFVYELLSWVEEMQMKLERAEWGNDLPSVELQLETQQHIHASVEELGSSVKEARLYEGKMSQNFHTSYVETLGKLETQYCKLKETSSFRMNLQSLHKFVSRATAELIWLNEKEEEELAYDWSDNNPNIPAKKNYFSELTMELEEKQDVFRSLQDTAELLSLENHPAKQTVEAYSAAVQSQLQWMKQLCLCVEQHVKENAAYFQFFSDARDLESFLRNLQDSIKRKYSCDHSTSLSRLEDLLQDSM", "length": 830, "header": "tr|A0ABB5UQC9-1|A0ABB5UQC9_PIG Computationally mapped isoform of Microtubule actin crosslinking factor 1 OS=Sus scrofa OX=9823 GN=MACF1 PE=1 SV=1 CANONICAL=A0A287AEG1-1" }, "locus": { "chromosome": "6", "start_pos": 95154516, "end_pos": 94964178, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107307.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107307.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081700.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081700.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 7035, "start_aa": "Thr", "end_pos": 7035, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr7035", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 7345, "start_aa": "Thr", "end_pos": 7345, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr7345", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEG1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEG1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "regulation of focal adhesion assembly", "id": "GO:0051893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051893", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEG1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEG1" } ], "pmid": "" }, { "name": "regulation of cell projection organization", "id": "GO:0031344", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031344", "evidence": [ { 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020928562", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928562", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AEQ7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGFLATWFQGPVTFKDVAVEFTQEEWVMLDSAQRSMYRDVMLENYINLSSVEYHLCKPVISLLGQDLRTVKKIPQGTCPDQEIQLKTKESTSKQSILGENSSSATKMIRFTKNDRSSTMRKDWECCKIRKHPEGILSHMTLTQKKTASQKRFCGYHELEENSKLRSKLVFSKTVSSSKYCHKCYLDIECLKHNSVLNNYENTSVSERVCESHKYDSALWHLERTETAQNECTCSKLSIHFKHNMLPICNSFPMVDNCFECDKIKAFCQLSFFKQQKQTPTGGKHECNQCGKAYKRVSNFILHKISHMGEKQYECKDCGKVFCDSSTLRRHVRTHTGEKPYECNQCGRAFSQNTSLKAHVRIHTGEKPYECNHCGKSFGTSSYLVVHKRIHSGEKRYECSDCGKAFNTSSQLKVHKKRHTGENLHECNDCGKVYSGLSSLRMHLRTHTGEKPYECKECRKTFSVSSSLSRHVRTHTGEKPYECIQCGKLFSQNSSLVLHKRVHTRRESYRNPIT", "length": 514, "header": "tr|A0A287AEQ7-1|A0A287AEQ7_PIG Isoform 1 of Zinc finger protein 891 OS=Sus scrofa OX=9823 GN=ZNF891 PE=4 SV=1 CANONICAL=A0A287AEQ7-1" }, "isoforms": [ { "isoform_ac": "A0A287AEQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEQ7/entry#A0A287AEQ7-1", "sequence": { "sequence": "MAGFLATWFQGPVTFKDVAVEFTQEEWVMLDSAQRSMYRDVMLENYINLSSVEYHLCKPVISLLGQDLRTVKKIPQGTCPDQEIQLKTKESTSKQSILGENSSSATKMIRFTKNDRSSTMRKDWECCKIRKHPEGILSHMTLTQKKTASQKRFCGYHELEENSKLRSKLVFSKTVSSSKYCHKCYLDIECLKHNSVLNNYENTSVSERVCESHKYDSALWHLERTETAQNECTCSKLSIHFKHNMLPICNSFPMVDNCFECDKIKAFCQLSFFKQQKQTPTGGKHECNQCGKAYKRVSNFILHKISHMGEKQYECKDCGKVFCDSSTLRRHVRTHTGEKPYECNQCGRAFSQNTSLKAHVRIHTGEKPYECNHCGKSFGTSSYLVVHKRIHSGEKRYECSDCGKAFNTSSQLKVHKKRHTGENLHECNDCGKVYSGLSSLRMHLRTHTGEKPYECKECRKTFSVSSSLSRHVRTHTGEKPYECIQCGKLFSQNSSLVLHKRVHTRRESYRNPIT", "length": 514, "header": "tr|A0A287AEQ7-1|A0A287AEQ7_PIG Isoform 1 of Zinc finger protein 891 OS=Sus scrofa OX=9823 GN=ZNF891 PE=4 SV=1 CANONICAL=A0A287AEQ7-1" }, "locus": { "chromosome": "14", "start_pos": 22520927, "end_pos": 22519386, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041945.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041945.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042356.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042356.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEQ7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEQ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110256671", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256671", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A8MT65-1", "protein_name": "Zinc finger protein 891", "gene_name": "ZNF891", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVMDLSSPWALTKQDSACFHLRNAEEERMIAVFLTTWLQEPMTFKDVAVEFTQEEWMMLDSAQRSLYRDVMLENYRNLTSVEYQLYRLTVISPLDQEEIRNMKKRIPQAICPDQKIQPKTKESTVQKILWEEPSNAVKMIKLTMHNWSSTLREDWECHKIRKQHKIPGGHWRQMIYAPKKTVPQELFRDYHELEENSKLGSKLIFSQSIFTSKHCQKCYSEIGCLKHNSIINNYVKNSISEKLYESHECDTTLWHFQRNQTVQKEYTYSKHGMHFTHNMFPVPNNLHMAQNACECNKDETLCHQSSLKKQGQTHTEKKHECNQCGKAFKRISNLTLYKKSHMGEKQYECKECGKVFNDSSTLRRHVRTHTGEKPYECNQCGKAFSQKTSLKAHMRTHTGEKPYECNQCGKSFGTSSYLIVHKRIHTGEKLYECSECGKAFNTSSHLKVHKKIHTGENVYECSDCGKVFSGVSSLRMHIRTHTGEKPYECKECRKAFSVSSSLRRHVRIHTGEKPYECIQCGKAFSQSSSLIIHKRIHTERETL", "length": 544 }, "evidence": [ { "id": "A0A287AEQ7", "url": "https://omabrowser.org/oma/group/A0A287AEQ7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEQ7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEQ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEQ7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEQ7" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEQ7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEQ7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEQ7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEQ7" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEQ7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEQ7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEQ7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEQ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 353, "end_pos": 355, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 493, "end_pos": 495, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AEQ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 514, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AEQ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AEQ7" } ], "lectin_list": [], "domain_list": [ { 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"field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"url": "https://www.uniprot.org/uniprotkb/A0A287AES3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AES3", "url": "https://www.uniprot.org/uniprotkb/A0A287AES3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KRBA1", "url": "https://www.uniprot.org/uniprotkb/A0A287AES3", "locus": { "chromosome": "18", "start_pos": 55762966, "end_pos": 55738167, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000034873", "url": "https://www.ensembl.org/id/ENSSSCG00000034873" } ] } } ], "crossref": [ { "id": "A0A287AES3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AES3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000034873", "url": 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"length": 1061, "header": "tr|A0A287AES3-1|A0A287AES3_PIG Isoform 1 of KRAB-A domain containing 1 OS=Sus scrofa OX=9823 GN=KRBA1 PE=4 SV=2 CANONICAL=A0A287AES3-1" }, "locus": { "chromosome": "18", "start_pos": 55760327, "end_pos": 55738386, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044533.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044533.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042327.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042327.2" } ] } }, { "isoform_ac": "A0A8W4F967-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AES3/entry#A0A8W4F967-1", "sequence": { "sequence": "TARPVSIAFRDLAVRFSEDEWRLLGEGQRALYLDVMQENYEALVSLGTAELLPLSAFLTPMEPGGARGAGDGQEPPRGAGPLGGAPQHSLHLTALVQLVKEIPDFLFREASPENGGAGLDGEAGTEDACPLQGLLTHLPDTPVGQPSVAPSPSSSSDPPGARGQGSPLPISEWDPARGLAPSSFSPGLRFLPCELGSGSPGHRPRARPLGTRATGASPGNSPLQGLINCLKEILEPVPQHPEAPLSLPPRVPSLGVLRLRAEPGRGSPPWAVKTEAASGHCPLQGLLGCLKEIPEARGRRPSPSGVGDPRPPEDPGAWRRSSGGPRPLQTPPPGPGPGAGSALSAVKTEEGWAQSPPAPVSCQLSKQTHSPPASCSPGDNRGTARVQVPGWGPAAQAGSASSSPLAALEACLKGIPLSGSLPPQPPATSWSRSYQPGDPGSQRPQPPPLGSHSKEGIVGPLALGLQRCRGDGPAPTQGSQGPPSSLSSSSSADEDLDFQSPVGSQGHRPGKGSPVGSSPLQGLENCLREIPTPRLQPAWSWSPAGDRGPRRGEPRNWTADTEGLRGEACEPAHHGQRVGDVPTRSLRLASPQVPASGTVPACYQQGLKDPGTTRPGRWRWLQDGPPNKPSPLHCLENSLKGILPGGPLGFACLVGPSPGSSSCSSVSSSEGEDSRLEPELWQPLLQDRDRLPSHKGLGLPSPPPGGLRTASRPGDGPRGGKPGDRHGLSAGAAVDPCPASQLEKRPGLGSCQSLGSAHGPLAWKPNHRRPLPQSQPEPSPTATVPPALPLAAPRPPCSCGSSLQQELRSLGAALSEKLDRLAVALAGLSQEVVTVRTQVHQLGRRPRGLGPKGLPRGPRWASGPAHRPRPYWRHKGPTRPRPKILRGQAAEPSGPSSSPSQQPLSSACSRRAMLTVCQPLGHTGGRQSPLPPSLPAALPSQVAPPGASADGEPLATVAAPARPLNWPKDPSSLLAELQRALEGELWGGEHRDPSWGPRPAQDAASPGGQPLPSPPSSRTFPGSGP", 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"MARQVSIAFRDLAVRFSEDEWRLLGEGQRALYLDVMQENYEALVSLGTAELLPLSAFLTPMEPGGARGAGDGQEPPRGAGPLGGAPQHSLHLTALVQLVKEIPDFLFREASPENGGAGLDGEGTGPGAAGTEDACPLQGLLTHLPDTPVGQPSVAPSPSSSSDPPGARGQGSPLPIRTADTPRPVEEEGPGAPGATGASPGNSPLQGLINCLKEILEPVPQHPEAPLSLPPRVPSLGVLRLRAEPGRGSPPWAVKTEAASGHCPLQGLLGCLKEIPEARGRRPSPSGVGDPRPPEDPGAWRRSSGGPRPLQTPPPGPGPGAGSALSAVKTEEGWAQSPPAPVSCQLSKQTHSPPASCSPGDNRGTARVQVPGWGPAAQEGIVGPLALGLQRCRGDGPAPTQGSQGPPSSLSSSSSADEDLDFQSPVGSQGHRPGKGSPVGSSPLQGLENCLREIPTPRLQPAWSWSPAGDRGPRRGEPRNWTADTEGLRGEACEPAHHGQRVGDVPTRSLRLASPQVPASGTVPACYQQGLKDPGTTRPGRWRWLQDGPPNKPSPLHCLENSLKGILPGGPLGFACLVGPSPGSSSCSSVSSSEGEDSRLEPELWQPLLQDRDRLPSHKGLGLPSPPPGGLRTASRPGDGPRGGKPGDRHGLSAGKAEEKAGGGSQLPWRDVCSETPGQPGALGDISRGAAVDPCPASQLEKRPGLGSCQSLGSAHGPLAWKPKPSEESRDMGPGDRRPGVTGSHRRPLPQSQPEPSPTATVPPALPLAAPRPPCSCGSSLQQELRSLGAALSEKLDRLAVALAGLSQEVVTVRTQVHQLGRRPRGLGPKGLPRGPRWASGPAHRPRPYWRHKGPTRPRPKILRGQAAEPSGPSSSPSQQPLSSACSRRAMLTVCQPLGHTGGRQSPLPPSLPAALPSQVAPPGASADGEPLATVAAPARPLNWPKDPSSLLAELQRALEGELWGGEHRDPSWGPRPAQDAASPGGQPLPSPPSSRTFPGSGP", "length": 1003, "header": "tr|A0A8W4F9Q2-1|A0A287AES3_PIG Computationally mapped isoform of KRAB-A domain containing 1 OS=Sus scrofa OX=9823 GN=KRBA1 PE=4 SV=1 CANONICAL=A0A287AES3-1" }, "locus": { "chromosome": "18", "start_pos": 55760327, "end_pos": 55738386, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105048.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105048.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076120.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076120.1" } ] } }, { "isoform_ac": "A0A8W4FC33-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AES3/entry#A0A8W4FC33-1", "sequence": { "sequence": "MARQVSIAFRDLAVRFSEDEWRLLGEGQRALYLDVMQENYEALVSLGTAELLPLSAFLTPMEPGGARGAGDGQEPPRGAGPLGGAPQHSLHLTALVQLVKEIPDFLFREASPENGGAGLDGEAGTEDACPLQGLLTHLPDTPVGQPSVAPSPSSSSDPPGARGQGSPLPISEWDPARGLAPSSFSPGLRFLPCELGSGSPGHRPRARPLGTSEQAGWASPGNSPLQGLINCLKEILEPVPQHPEAPLSLPPRVPSLGVLRLRAEPGRGSPPWAVKTEAASGHCPLQGLLGCLKEIPEARGRRPSPSGVGDPRPPEDPGAWRRSSGGPRPLQTPPPGPGPGAGSALSAVKTEEGWAQSPPAPVSCQLSKQTHSPPASCSPGDNRGTARVQVPGWGPAAQAGSASSSPLAALEACLKGIPLSGSLPPQPPATSWSRSYQPGDPGSQRPQPPPLGSHSKEGIVGPLALGLQRCRGDGPAPTQGSQGPPSSLSSSSSADEDLDFQSPVGSQGHRPGKGSPVGSSPLQGLENCLREIPTPRLQPAWSWSPAGDRGPRRGEPRNWTADTEGLRGEACEPAHHGQRVGDVPTRSLRLASPQVPASGTVPACYQQGLKDPGTTRPGRWRWLQDGPPNKPSPLHCLENSLKGILPGGPLGFACLVGPSPGSSSCSSVSSSEGEDSRLEPELWQPLLQGELLGERKRCVSTPQTLSAPSAGAAVDPCPASQLEKRPGLGSCHEESRDMGPGDRRPGVTAGSHRRPLPQSQPEPSPTATVPPALPLAAPRPPCSCGSSLQQELRSLGAALSEKLDRLAVALAGLSQEVVTVRTQVHQLGRRPRGLGPKGLPRGPRWASGPAHRPRPYWRHKGPTRPRPKILRGQAAEPSGPSSSPSQQPLSSACSRRAMLTVCQPLGHTGGRQSPLPPSLPAALPSQVAPPGASADGEPLATVAAPARPLNWPKDPSSLLAELQRALEGELWGGEHRDPSWGPRPAQDAASPGGQPLPSPPSSRTFPGSGP", "length": 1010, "header": "tr|A0A8W4FC33-1|A0A287AES3_PIG Computationally mapped isoform of KRAB-A domain containing 1 OS=Sus scrofa OX=9823 GN=KRBA1 PE=4 SV=1 CANONICAL=A0A287AES3-1" }, "locus": { "chromosome": "18", "start_pos": 55760327, "end_pos": 55738386, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095289.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095289.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076880.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076880.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 458, "start_aa": "Thr", "end_pos": 458, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr458", "evidence": [ { "id": 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"id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A287AES3", "url": "https://www.uniprot.org/uniprotkb/A0A287AES3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 538, "end_pos": 540, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AES3-F1", "pdb_chain": "global", "start_pos": 1, 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S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEV7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100302697", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100302697", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A075B5S0-1", "protein_name": "Immunoglobulin heavy variable 16-1", "gene_name": "Ighv16-1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "EVQLVESGGSLGQPGGSTKLSCEEASGFTFSDHWMDWFRQAPGMRLEWLANTNHDESGKGYAESVKDRFSISRDNSENLLYLQMNSLRNEDTALYYCAR", "length": 99 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B603-1", "protein_name": "T cell receptor alpha variable 6D-6", "gene_name": "Trav6-6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSPGFVAVILLILGRTHGDSVTQTEGPVTVSESESLIINCTYSATSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALG", "length": 114 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B625-1", "protein_name": "T cell receptor alpha variable 4N-3", "gene_name": "Trav4n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERNLGAVLGILWVQICWVSGDKVKQSPSALSLQEGTNSALRCNFSIAATTVQWFLQNPRGSLMNLFYLVPGTKENGRLKSAFDSKESYSTLHIRDAQLEDSGTYFCAAE", "length": 110 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B695-1", "protein_name": "T cell receptor alpha variable 9D-3", "gene_name": "Trav9d-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLALLPVLGIHFLLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYFGTPYLFWYVQYPRQGLQLLLKYYPGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDWAVYFCAVS", "length": 113 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6B4-1", "protein_name": "T cell receptor alpha variable 6-4", "gene_name": "Trav6-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSPVLVTVMLLFMLGMRKTHGDSVTQKQGQVTLSEDDFLFINCTYSTTTYPTLLWYVQYLGQGPQLLLKVTTANNKGISRGFEATYDKGTTSFHLQKASVQESDSAVYFCALV", "length": 115 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6D8-1", "protein_name": "T cell receptor alpha variable 3-3", "gene_name": "Trav3-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "GEQVEQRPPHLSVREGDSAVITCTYTDPNSYYFFWYKQEPGASLQLLMKVFSSTEINEGQGFTVLLNKKDKRLSLNLTAAHPGDSAAYFCAV", "length": 92 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B759-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "protein_name": "Elongin-C", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "protein_name": "Calmodulin 3", "gene_name": "CALM3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FLM5-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD0-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7I2-1", "protein_name": "Beta-defensin", "gene_name": "DEFB125", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNLLLTFMICGLLTLVTKAGWNVERCWSYNIGHCRRRCLHLERYKHLCMNKRACCIPLSSDDPYTQWPLPPEDQTVGMKTPYFRPVSPGSELDDQITITITVDQESTGTEQDIEGTAISFQASTPIPENIEDTKFSDKANTLNLHKL", "length": 147 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7N4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152708", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDQTNSSVVTEFVLVGLTQSLGMQFLLFLLFSTFYVGIILGNLFIVFTVISDSHLHSPMYILLANLSLIDLGLSSTTVPRMISDLFSDCKTISFHNCMIQMFFIHVTGGVEMVLLIAIAYDRYTAICKPLHYLTIMNPQMCMLLVVAAWITGVTHAVFQFAFVINLPFCGPNNVGSFYCDFPRVIKLACIDNYGLEFVVTANSGFLSTGTFFLLVVSYIFILVTVRQHSSKDLSKAFFTLSTHITVVFLFFLPCMFLYVWPFPTKSLDTFLAIVDFAVTPVLNPAIYTLRNRDMKVEMRRLSRQVISSREMT", "length": 312 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBV4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100154723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SJ79-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259717", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SLL7-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SMZ6-1", "protein_name": "10 kDa heat shock protein, mitochondrial", "gene_name": "HSPE1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5L2-1", "protein_name": "Histone H2A", "gene_name": "H2AC18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J311-1", "protein_name": "Zinc finger (C2H2 type) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "A0A287AEV7", "url": "https://omabrowser.org/oma/group/A0A287AEV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEV7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEV7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "antibacterial humoral response", "id": "GO:0019731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019731", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEV7" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AEW3-1", "uniprot_ac": "A0A287AEW3", "uniprot_id": "A0A287AEW3_PIG", "mass": { "chemical_mass": 23163.0, "monoisotopic_mass": 23163.0 }, "refseq": {}, "gene_names": [ { "name": "MRPS23", "type": "recommended", "evidence": [ { "id": "A0A287AEW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AEW3" } ] } ], "protein_names": [ { "name": "Small ribosomal subunit protein mS23", "type": "recommended", "evidence": [ { "id": "A0A287AEW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AEW3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AEW3", "url": "https://www.uniprot.org/uniprotkb/A0A287AEW3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MRPS23", "url": "https://www.uniprot.org/uniprotkb/A0A287AEW3", "locus": { "chromosome": "12", "start_pos": 34122020, "end_pos": 34129548, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035193", "url": "https://www.ensembl.org/id/ENSSSCG00000035193" } ] } } ], "crossref": [ { "id": "A0A287AEW3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AEW3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035193", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035193", 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"MSSSRLGLRLAACLLNISEARRKYIVENVAKAALLERNGQKHPNVSVLNIFSDHEYNRSVITIAGSVDELGLAENLLLRVPGCSVFLFGEADLPEKRPLVQRRKQLGWFTRRDFSALEPDLGVAPARKCGLTGSQYGFDLLLFLNLRRE", "length": 149, "header": "tr|A0A4X1VD11-1|A0A287AF26_PIG Computationally mapped isoform of Formiminotransferase N-terminal subdomain domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100522040 PE=4 SV=1 CANONICAL=A0A287AF26-1" }, "locus": { "chromosome": "15", "start_pos": 103492494, "end_pos": 103469165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076253.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076253.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071024.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071024.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": 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"https://www.uniprot.org/uniprotkb/A0A287AF76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AF76-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFR1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AP62", "url": "https://www.uniprot.org/uniprotkb/A0A287AP62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AP62-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AXS8", "url": "https://www.uniprot.org/uniprotkb/A0A287AXS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AXS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AXS8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B7X5", "url": "https://www.uniprot.org/uniprotkb/A0A287B7X5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B7X5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B7X5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FB87", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FB87-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB87-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNJ0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFSVKLVTQVARQPGPPTPSPYSAHEINKGHPNLAATPPGHASSPGLSQTPYPSGQNAGPTTLVYPQAPQTMNSQPQTRSPFFQRPQIQPPRATIPNSSPSLRPGAQTPTAVYQANQHIMMVNHLPMPYPVPQGPQYCIPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGPGDFPNAYGTPFYPSQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQVPEHSPVVYGTVESAHLAASAPVTAASDQKQEEKPKPDPVLMSPSPVLRLALSGEKKERGGPTSETAVVESLPELPLPPSPTTVSPLGRSTTASPSSATLSSQPIFTTATDDKCELSSSTEDTIPTPNPTSCTEASDPSPTDEIDDDICKTSCSIAPSDLPLISSTNLINEMNGVSEKLPATESIVEIVKQEVLPLTLELEILENPPEEVKVEYVPTPITPSAVPSFSPSPPTPPASPPPTPVIGPAAATNVSTASVPSAVQRVLEEDESGRTCLSEDAKEIQNKAEVEADGQTEEIVDSQNLGSRKSPVPAQAAITAPKMWKKPKDRTRTTEEVLEAALEPKAEEELSSDKVLESEQDKMSQGFHPERDPSDLKNVKAVEENGEEAEPVRNGAESVSEGEGVDANSGSTDSSGEGVTFPFKSESWKPADTEGKKQYDREFLLDFQFMPACIQKPEGLPPISDVVLDKINQPKLPMRTLDPRILPRGPDFTPAFADFGRQSPGGRGVPLLNVGPRRSQPGQRREPRKIITVPVKEDVHLKKAENAWKPSQKRDSQAEDPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQRKVQQLMTKEKRRPGVQRVDEGGWNTVQGAKNSRVLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASETDALRSSASSLNRFSALQPPAPSGSTSSTPLEFDSRRTLTSRGSMGREKNDKPLPSATARPNTFMRGGSSKDLLDNQSQEEQRREMLETVKQLTGGMDMERSSAETDRNRTRESVVKPEIPAMSAPDKPALSEEEMERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRMGVESTLERSQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGISMRELIIEFTKPLIPVGRAGVLLSEILHLLCKQMSHKKVGALWREADLSWKDFLPEGEDVHNFLLEQKLDFIESDSSCSSEALSKKELSAEELYKRLEKLIIEDKANDEQIFDWVEANLDESQMSSPTFLRALMTAVCKAAIIADCSTFRVDTAVIKQRVPILLKYLDSDTEKELQALYALQASIVKLDQPANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQNGKGVALKSVTAFFTWLREAEEESEDN", "length": 1658, "header": "tr|A0A287AF76-1|A0A287AF76_PIG Isoform 1 of Eukaryotic translation initiation factor 4 gamma 3 OS=Sus scrofa OX=9823 GN=EIF4G3 PE=1 SV=1 CANONICAL=A0A287AF76-1" }, "isoforms": [ { "isoform_ac": "A0A287AF76-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76/entry#A0A287AF76-1", "sequence": { "sequence": "MAFSVKLVTQVARQPGPPTPSPYSAHEINKGHPNLAATPPGHASSPGLSQTPYPSGQNAGPTTLVYPQAPQTMNSQPQTRSPFFQRPQIQPPRATIPNSSPSLRPGAQTPTAVYQANQHIMMVNHLPMPYPVPQGPQYCIPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGPGDFPNAYGTPFYPSQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQVPEHSPVVYGTVESAHLAASAPVTAASDQKQEEKPKPDPVLMSPSPVLRLALSGEKKERGGPTSETAVVESLPELPLPPSPTTVSPLGRSTTASPSSATLSSQPIFTTATDDKCELSSSTEDTIPTPNPTSCTEASDPSPTDEIDDDICKTSCSIAPSDLPLISSTNLINEMNGVSEKLPATESIVEIVKQEVLPLTLELEILENPPEEVKVEYVPTPITPSAVPSFSPSPPTPPASPPPTPVIGPAAATNVSTASVPSAVQRVLEEDESGRTCLSEDAKEIQNKAEVEADGQTEEIVDSQNLGSRKSPVPAQAAITAPKMWKKPKDRTRTTEEVLEAALEPKAEEELSSDKVLESEQDKMSQGFHPERDPSDLKNVKAVEENGEEAEPVRNGAESVSEGEGVDANSGSTDSSGEGVTFPFKSESWKPADTEGKKQYDREFLLDFQFMPACIQKPEGLPPISDVVLDKINQPKLPMRTLDPRILPRGPDFTPAFADFGRQSPGGRGVPLLNVGPRRSQPGQRREPRKIITVPVKEDVHLKKAENAWKPSQKRDSQAEDPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQRKVQQLMTKEKRRPGVQRVDEGGWNTVQGAKNSRVLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASETDALRSSASSLNRFSALQPPAPSGSTSSTPLEFDSRRTLTSRGSMGREKNDKPLPSATARPNTFMRGGSSKDLLDNQSQEEQRREMLETVKQLTGGMDMERSSAETDRNRTRESVVKPEIPAMSAPDKPALSEEEMERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRMGVESTLERSQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGISMRELIIEFTKPLIPVGRAGVLLSEILHLLCKQMSHKKVGALWREADLSWKDFLPEGEDVHNFLLEQKLDFIESDSSCSSEALSKKELSAEELYKRLEKLIIEDKANDEQIFDWVEANLDESQMSSPTFLRALMTAVCKAAIIADCSTFRVDTAVIKQRVPILLKYLDSDTEKELQALYALQASIVKLDQPANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQNGKGVALKSVTAFFTWLREAEEESEDN", "length": 1658, "header": "tr|A0A287AF76-1|A0A287AF76_PIG Isoform 1 of Eukaryotic translation initiation factor 4 gamma 3 OS=Sus scrofa OX=9823 GN=EIF4G3 PE=1 SV=1 CANONICAL=A0A287AF76-1" }, "locus": { "chromosome": "6", "start_pos": 79251565, "end_pos": 79022994, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045379.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045379.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042484.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042484.1" } ] } }, { "isoform_ac": "A0A287AFR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76/entry#A0A287AFR1-1", "sequence": { "sequence": "MNSQPQTRSPPSRTVPIHCTDNWKRRKVLEQTPVYRSLAGRGWIKYCIFAAGPRPAHHQGGFRPIQFFQRPQIQPPRATIPNSSPSLRPGAQTPTAVYQANQHIMMVNHLPMPYPVPQGPQYCIPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGPGDFPNAYGTPFYPSQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQVPEHSPVVYGTVESAHLAASAPVTAASDQKQEEKPKPDPVLMSPSPVLRLALSGEKKERGGPTSETAVVESLPELPLPPSPTTVSPLGRSTTASPSSATLSSQPIFTTATDDKCELSSSTEDTIPTPNPTSCTEASDPSPTDEIDDDICKTSCSIAPSDLPLISSTNLINEMNGVSEKLPATESIVEIVKQEVLPLTLELEILENPPEEVKVEYVPTPITPSAVPSFSPSPPTPPASPPPTPVIGPAAATNVSTASVPSAVQRVLEEDESGRTCLSEDAKEIQNKAEVEADGQTEEIVDSQNLGSRKSPVPAQAAITAPKMWKKPKDRTRTTEEVLEAALEPKAEEELSSDKVLESEQDKMSQGFHPERDPSDLKNVKAVEENGEEAEPVRNGAESVSEGEGVDANSGSTDSSGEGVTFPFKSESWKPADTEGKKQYDREFLLDFQFMPACIQKPEGLPPISDVVLDKINQPKLPMRTLDPRILPRGPDFTPAFADFGRQSPGGRGVPLLNVGPRRSQPGQRREPRKIITVPVKEDVHLKKAENAWKPSQKRDSQAEDPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQRKVQQLMTKEKRRPGVQRVDEGGWNTVQGAKNSRVLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASETVLFCLLSRGSMGREKNDKPLPSATARPNTFMRGGSSKDLLDNQSQEEQRREMLETVKQLTGGMDMERSSAETDRNRTRESVVKPEIPAMSAPDKPALSEEEMERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRMGVESTLERSQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGISMRELIIEFTKPLIPVGRAGVLLSEILHLLCKQMSHKKVGALWREADLSWKDFLPEGEDVHNFLLEQKLDFIESDSSCSSEALSKKELSAEELYKRLEKLIIEDKANDEQIFDWVEANLDESQMSSPTFLRALMTAVCKAAIIADCSTFRVDTAVIKQRVPILLKYLDSDTEKELQALYALQASIVKLDQPANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQNGKGVALKSVTAFFTWLREAEEESEDN", "length": 1609, "header": "tr|A0A287AFR1-1|A0A287AFR1_PIG Computationally mapped isoform of Eukaryotic translation initiation factor 4 gamma 3 OS=Sus scrofa OX=9823 GN=EIF4G3 PE=1 SV=3 CANONICAL=A0A287AF76-1" }, "locus": { "chromosome": "6", "start_pos": 79198769, "end_pos": 79022994, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065345.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065345.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042734.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042734.3" } ] } }, { "isoform_ac": "A0A287AP62-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76/entry#A0A287AP62-1", "sequence": { "sequence": "HVTQVARQPGPPTPSPYSAHEINKGHPNLAATPPGHASSPGLSQTPYPSGQNAGPTTLVYPQAPQTMNSQPQTRSPFFQRPQIQPPRATIPNSSPSLRPGAQTPTAVYQANQHIMMVNHLPMPYPVPQGPQYCIPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGPGDFPNAYGTPFYPSQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQVPEHSPVVYGTVESAHLAASAPVTAASDQKQEEKPKPDPVLMSPSPVLRLALSGEKKERGGPTSETAVVESLPELPLPPSPTTVSPLGRSTTASPSSATLSSQPIFTTATDDKCELSSSTEDTIPTPNPTSCTEASDPSPTDEIDDDICKTSCSIAPSDLPLISSTNLINEMNGVSEKLPATESIVEIVKQEVLPLTLELEILENPPEEVKVEYVPTPITPSAVPSFSPSPPTPPASPPPTPVIGPAAATNVSTASVPSAVQRVLEEDESGRTCLSEDAKEIQNKAEVEADGQTEEIVDSQNLGSRKSPVPAQAAITAPKMWKKPKDRTRTTEEVLEAALEPKAEEELSSDKVLESEQDKMSQGFHPERDPSDLKNVKAVEENGEEAEPVRNGAESVSEGEGVDANSGSTDSSGEGVTFPFKSESWKPADTEGKKQYDREFLLDFQFMPACIQKPEGLPPISDVVLDKINQPKLPMRTLDPRILPRGPDFTPAFADFGRQSPGGRGVPLLNVGPRRSQPGQRREPRKIITVPVKEDVHLKKAENAWKPSQKRDSQAEDPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQRKVQQLMTKEKRRPGVQRVDEGGWNTVQGAKNSRVLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASETDALRSSASSLNRFSALQPPAPSGSTSSTPLEFDSRRTLTSRGSMGREKNDKPLPSATARPNTFMRGGSSKDLLDNQSQEEQRREMLETVKQLTGGMDMERSSAETDRNRTRESVVKPEIPAMSAPDKPALSEEEMERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRMGVESTLERSQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGISMRELIIEFTKPLIPVGRAGVLLSEILHLLCKQMSHKKVGALWREADLSWKDFLPEGEDVHNFLLEQKLDFIESDSSCSSEALSKKELSAEELYKRLEKLIIEDKANDEQIFDWVEANLDESQMSSPTFLRALMTAVCKAAIIADCSTFRVDTAVIKQRVPILLKYLDSDTEKELQALYALQASIVKLDQPANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQNGKGVALKSVTAFFTWLREAEEESEDN", "length": 1652, "header": "tr|A0A287AP62-1|A0A287AP62_PIG Computationally mapped isoform of Eukaryotic translation initiation factor 4 gamma 3 OS=Sus scrofa OX=9823 GN=EIF4G3 PE=1 SV=2 CANONICAL=A0A287AF76-1" }, "locus": { "chromosome": "6", "start_pos": 79249494, "end_pos": 79022994, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057014.2", "url": "https://www.ensembl.org/id/ENSSSCT00000057014.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045726.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045726.2" } ] } }, { "isoform_ac": "A0A287AXS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76/entry#A0A287AXS8-1", "sequence": { "sequence": "SAHEINKGHPNLAATPPGHASSPGLSQTPYPSGQNAGPTTLVYPQAPQTMNSQPQTRSPFFQRPQIQPPRATIPNSSPSLRPGAQTPTAVYQANQHIMMVNHLPMPYPVPQGPQYCIPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGPGDFPNAYGTPFYPSQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQVPEHSPVVYGTVESAHLAASAPVTAASDQKQEEKPKPDPVLMSPSPVLRLALSGEKKERGGPTSETAVVESLPELPLPPSPTTVSPLGRSTTASPSSATLSSQPIFTTATDDKCELSSSTEDTIPTPNPTSCTEASDPSPTDEIDDDICKTSCSIAPSDLPLISSTNLINEMNGVSEKLPATESIVEIVKQEVLPLTLELEILENPPEEVKVEYVPTPITPSAVPSFSPSPPTPPASPPPTPVIGPAAATNVSTASVPSAVQRVLEEDESGRTCLSEDAKEIQNKAEVEADGQTEEIVDSQNLGSRKSPVPAQAAITAPKMWKKPKDRTRTTEEVLEAALEPKAEEELSSDKVLESEQDKMSQGFHPERDPSDLKNVKAVEENGEEAEPVRNGAESVSEGEGVDANSGSTDSSGEGVTFPFKSESWKPADTEGKKQYDREFLLDFQFMPACIQKPEGLPPISDVVLDKINQPKLPMRTLDPRILPRGPDFTPAFADFGRQSPGGRGVPLLNVGPRRSQPGQRREPRKIITVPVKEDVHLKKAENAWKPSQKRDSQAEDPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQRKVQQLMTKEKRRPGVQRVDEGGWNTVQGAKNSRVLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASETDALRSSASSLNRFSALQPPAPSGSTSSTPLEFDSRRTLTSRGSMGREKNDKPLPSATARPNTFMRGGSSKDLLDNQSQEEQRREMLETVKQLTGGMDMERSSAETDRNRTRESVVKPEIPAMSAPDKPALSEEEMERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRMGVESTLERSQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGISMRELIIEFTKPLIPVGRAGVLLSEILHLLCKQMSHKKVGALWREADLSWKDFLPEGEDVHNFLLEQKLDFIESDSSCSSEALSKKELSAEELYKRLEKLIIEDKANDEQIFDWVEANLDESQMSSPTFLRALMTAVCKAAIIADCSTFRVDTAVIKQRVPILLKYLDSDTEKELQALYALQASIVKLDQPANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQNGKGVALKSVTAFFTWLREAEEESEDN", "length": 1635, "header": "tr|A0A287AXS8-1|A0A287AXS8_PIG Computationally mapped isoform of Eukaryotic translation initiation factor 4 gamma 3 OS=Sus scrofa OX=9823 GN=EIF4G3 PE=1 SV=3 CANONICAL=A0A287AF76-1" }, "locus": { "chromosome": "6", "start_pos": 79249179, "end_pos": 79022994, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065554.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065554.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048688.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048688.3" } ] } }, { "isoform_ac": "A0A287B7X5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76/entry#A0A287B7X5-1", "sequence": { "sequence": "MNSQPQTRSPPSRTVPIHCTDNWKRRKVLEQTPVYRSLAGRGWIKYCIFAAGPRPAHHQGGFRPIQFFQRPQIQPPRATIPNSSPSLRPGAQTPTAVYQANQHIMMVNHLPMPYPVPQGPQYCIPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGPGDFPNAYGTPFYPSQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQVPEHSPVVYGTVESAHLAASAPVTAASDQKQEEKPKPDPVLMSPSPVLRLALSGEKKERGGPTSETAVVESLPELPLPPSPTTVSPLGRSTTASPSSATLSSQPIFTTATDDKCELSSSTEDTIPTPNPTSCTEASDPSPTDEIDDDICKTSCSIAPSDLPLISSTNLINEMNGVSEKLPATESIVEIVKQEVLPLTLELEILENPPEEVKVEYVPTPITPSAVPSFSPSPPTPPASPPPTPVIGPAAATNVSTASVPSAVQRVLEEDESGRTCLSEDAKEIQNKAEVEADGQTEEIVDSQNLGSRKSPVPAQAAITAPKMWKKPKDRTRTTEEVLEAALEPKAEEELSSDKVLESEQDKMSQGFHPERDPSDLKNVKAVEENGEEAEPVRNGAESVSEGEGVDANSGSTDSSGEGVTFPFKSESWKPADTEGKKQYDREFLLDFQFMPACIQKPEGLPPISDVVLDKINQPKLPMRTLDPRILPRGPDFTPAFADFGRQSPGGRGVPLLNVGPRRSQPGQRREPRKIITVPVKEDVHLKKAENAWKPSQKRDSQAEDPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQRKVQQLMTKEKRRPGVQRVDEGGWNTVQGAKNSRVLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASETDALRSSASSLNRFSALQPPAPSGSTSSTPLEFDSRRTLTSRGSMGREKNDKPLPSATARPNTFMRGGSSKDLLDNQSQEEQRREMLETVKQLTGGMDMERSSAETDRNRTRESVVKPEIPAMSAPDKPALSEEEMERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRMGVESTLERSQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGISMRELIIEFTKPLIPVGRAGVLLSEILHLLCKQMSHKKVGALWREADLSWKDFLPEGEDVHNFLLEQKLDFIESDSSCSSEALSKKELSAEELYKRLEKLIIEDKANDEQIFDWVEANLDESQMSSPTFLRALMTAVCKAAIIADCSTFRVDTAVIKQRVPILLKYLDSDTEKELQALYALQASIVKLDQPANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQNGKGVALKSVTAFFTWLREAEEESEDN", "length": 1642, "header": "tr|A0A287B7X5-1|A0A287B7X5_PIG Computationally mapped isoform of Eukaryotic translation initiation factor 4 gamma 3 OS=Sus scrofa OX=9823 GN=EIF4G3 PE=1 SV=2 CANONICAL=A0A287AF76-1" }, "locus": { "chromosome": "6", "start_pos": 79198769, "end_pos": 79022994, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044728.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044728.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052208.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052208.2" } ] } }, { "isoform_ac": "A0A8W4FB87-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76/entry#A0A8W4FB87-1", "sequence": { "sequence": "MNSQPQTRSPPSRTVPIHCTDNWKRRKVLEQTPVYRSLAGRGWIKYCIFAAGPRPAHHQVLYPCPFFFQRPQIQPPRATIPNSSPSLRPGAQTPTAVYQANQHIMMVNHLPMPYPVPQGPQYCIPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGPGDFPNAYGTPFYPSQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQVPEHSPVVYGTVESAHLAASAPVTAASDQKQEEKPKPDPVLMSPSPVLRLALSGEKKERGGPTSETAVVESLPELPLPPSPTTVSPLGRSTTASPSSATLSSQPIFTTATDDKCELSSSTEDTIPTPNPTSCTEASDPSPTDEIDDDICKTSCSIAPSDLPLISSTNLINEMNGVSEKLPATESIVEIVKQEVLPLTLELEILENPPEEVKVEYVPTPITPSAVPSFSPSPPTPPASPPPTPVIGPAAATNVSTASVPSAVQRVLEEDESGRTCLSEDAKEIQNKAEVEADGQTEEIVDSQNLGSRKSPVPAQAAITAPKMWKKPKDRTRTTEEVLEAALEPKAEEELSSDKVLESEQDKMSQGFHPERDPSDLKNVKAVEENGEEAEPVRNGAESVSEGEGVDANSGSTDSSGEGVTFPFKSESWKPADTEGKKQYDREFLLDFQFMPACIQKPEGLPPISDVVLDKINQPKLPMRTLDPRILPRGPDFTPAFADFGRQSPGGRGVPLLNVGPRRSQPGQRREPRKIITVPVKEDVHLKKAENAWKPSQKRDSQAEDPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQRKVQQLMTKEKRRPGVQRVDEGGWNTVQGAKNSRVLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASETDALRSSASSLNRFSALQPPAPSGSTSSTPLEFDSRRTLTSRGSMGREKNDKPLPSATARPNTFMRGGSSKDLLDNQSQEEQRREMLETVKQLTGGMDMERSSAETDRNRTRESVVKPEIPAMSAPDKPALSEEEMERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRMGVESTLERSQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGISMRELIIEFTKPLIPVGRAGVLLSEILHLLCKQMSHKKVGALWREADLSWKDFLPEGEDVHNFLLEQKLDFIESDSSCSSEALSKKELSAEELYKRLEKLIIEDKANDEQIFDWVEANLDESQMSSPTFLRALMTAVCKAAIIADCSTFRVDTAVIKQRVPILLKYLDSDTEKELQALYALQASIVKLDQPANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQNGKGVALKSVTAFFTWLREAEEESEDN", "length": 1642, "header": "tr|A0A8W4FB87-1|A0A287AF76_PIG Computationally mapped isoform of Eukaryotic translation initiation factor 4 gamma 3 OS=Sus scrofa OX=9823 GN=EIF4G3 PE=1 SV=1 CANONICAL=A0A287AF76-1" }, "locus": { "chromosome": "6", "start_pos": 79198769, "end_pos": 79022994, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097965.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097965.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076661.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076661.1" } ] } }, { "isoform_ac": "A0A8W4FNJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76/entry#A0A8W4FNJ0-1", "sequence": { "sequence": "MNSQPQTRSPGGFRPIQFFQRPQIQPPRATIPNSSPSLRPGAQTPTAVYQANQHIMMVNHLPMPYPVPQGPQYCIPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGPGDFPNAYGTPFYPSQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQLPSQVPEHSPVVYGTVESAHLAASAPVTAASDQKQEEKPKPDPVLMSPSPVLRLALSGEKKERGGPTSETAVVESLPELPLPPSPTTVSPLGRSTTASPSSATLSSQPIFTTATDDKCELSSSTEDTIPTPNPTSCTEASDPSPTDEIDDDICKTSCSIAPSDLPLISSTNLINEMNGVSEKLPATESIVEIVKQEVLPLTLELEILENPPEEVKVEYVPTPITPSAVPSFSPSPPTPPASPPPTPVIGPAAATNVSTASVPSAVQRVLEEDESGRTCLSEDAKEIQNKAEVEADGQTEEIVDSQNLGSRKSPVPAQAAITAPKMWKKPKDRTRTTEEVLEAALEPKAEEELSSDKVLESEQDKMSQGFHPERDPSDLKNVKAVEENGEEAEPVRNGAESVSEGEGVDANSGSTDSSGEGVTFPFKSESWKPADTEGKKQYDREFLLDFQFMPACIQKPEGLPPISDVVLDKINQPKLPMRTLDPRILPRGPDFTPAFADFGRQSPGGRGVPLLNVGPRRSQPGQRREPRKIITVPVKEDVHLKKAENAWKPSQKRDSQAEDPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQRKVQQLMTKEKRRPGVQRVDEGGWNTVQGAKNSRVLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASETDALRSSASSLNRFSALQPPAPSGSTSSTPLEFDSRRTLTSRGSMGREKNDKPLPSATARPNTFMRGGSSKDLLDNQSQEEQRREMLETVKQLTGGMDMERSSAETDRNRTRESVKPEIPAMSAPDKPALSEEEMERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRMGVESTLERSQITRDHMGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGISMRELIIEFTKPLIPVGRAGVLLSEILHLLCKQMSHKKVGALWREADLSWKDFLPEGEDVHNFLLEQKLDFIESDSSCSSEALSKKELSAEELYKRLEKLIIEDKANDEQIFDWVEANLDESQMSSPTFLRALMTAVCKAAIIADCSTFRVDTAVIKQRVPILLKYLDSDTEKELQALYALQASIVKLDQPANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQNGKGVALKSVTAFFTWLREAEEESEDN", "length": 1591, "header": "tr|A0A8W4FNJ0-1|A0A287AF76_PIG Computationally mapped isoform of Eukaryotic translation initiation factor 4 gamma 3 OS=Sus scrofa OX=9823 GN=EIF4G3 PE=1 SV=1 CANONICAL=A0A287AF76-1" }, "locus": { "chromosome": "6", "start_pos": 79198769, "end_pos": 79022994, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095622.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095622.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080762.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080762.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 19, "start_aa": "Thr", "end_pos": 19, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr19", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 251, "start_aa": "Thr", "end_pos": 251, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr251", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 322, "start_aa": "Thr", "end_pos": 322, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr322", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 341, "start_aa": "Thr", "end_pos": 341, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr341", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 400, "start_aa": "Thr", "end_pos": 400, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr400", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 479, "start_aa": "Thr", "end_pos": 479, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr479", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 492, "start_aa": "Thr", "end_pos": 492, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr492", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 500, "start_aa": "Thr", "end_pos": 500, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr500", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FB87", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB87" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1169408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169408", "resource": "Reactome", "description": "ISG15 antiviral mechanism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A378-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma, 3", "gene_name": "Eif4g3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VKKIRPHRPSPATEKGAASPGEGDRDPPPPAHEDIAVKGSAAAAGTGPGTGAAAAAAAAAVPPPHPAAAAAAAAAAAAAAAVAAAPPHPNIRALQTPAPQQIPRGPVQQPLEDRIFPPTVSAVYSTVTQVARQPGPPTPSPYSAHEINKGHPNLAATPPGHASSPGLSQTPYPSGQNAGPATLVYPQAPQTMNSQPQARSPFFQRPQIQPPRAAIPNSSPSLRPGAQTPTAVYQANQHIMMVNHLPMPYPVPQGPQYCIPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGPGDFANAYGTPFYPSQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPPQQLPSQAPEHSPVVYGTVESAHLAASTPVTAASDQKQEEKPKPDPVFQSPSTVLRLVLSGEKKEQAGQIPETAAGEPSPEPPRTSSPTTLPPLARSSLPSPMSAALSSQQLLTAEDKCELSSSKDDAPPVRSPTSCTAAPGPSLTDDIGLCKKPCGVAPPDGQLVSSPVLINEMNGVGEKLPAKENTVDMVRQEVLPLTLELEILEHPQEERKVECTPTPITPSTMPSFSPAPPTPPASPPCTPVVLSATIARSPAVATVIQRVVDEGESLRTCLSKDAKETQDKAEAESDGQTEETADPQNAHAGRSPAPVQTATTAPKTWKKTKERTRTPDEVLEAEAEPKAEEELSVDSVLEPEQEKMSQGFQFERDPSTLKRAKAEEENGEEAEPVRNGAESASEGEGGDANSGSTDSSGDGVTFPFKAESWKPADTEGKKQYDREFLLDIQFMPACIQKPEGLPPISDVVLDKINQPRLPMRTLDPRILPRGPDFTPAFADFGRQTPGGRGVPLLSVGPRRSQPGQRREPRKIITVSVKEDVHLRKAENAWKPSQKRDSHADDPESIKTQELFRKVRSILNKLTPQMFNQLMKQVSALTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQRKVQQLMTKEKRRPGVQRVDEGGWNTVQGAKNSRVLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASETDALRSSASSLNRFSPLQPPAPSGSPSATPLDFDSRRALTSRGSMGREKSDKPLPAGTARPNTFLRGSSKDLLDNQSQEEQRREMLETVKQLTGGVDAERASTEADRSKARELVKSEVCTVPAPDKPALSEEEVERKSKSIIDEFLHINDFKEATQCIEELSAQGPLHVFVKVGVEFTLERSQITRDHMGHLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGISMRELIVEFSKPLLPVGRAGVLLSEILHLLCRQMSHKKVSALWREADLSWKDFLPEGEDVHNFLLEQKLDFTESEGPCSSEALSKKELSAEELSQRLEKLIMEDKADDERIFDWVEANLDESQMSSPTFLRALMTAVCKAAIVADCSTFRVDTAVIKQRVPILLKYLDSDTEKELQALYALQASIVKLDQPANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQNGKGVALKSVTAFFTWLREAEEESEDN", "length": 1769 }, "evidence": [ { "id": "A0A287AF76", "url": "https://omabrowser.org/oma/group/A0A287AF76/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A8DZ29-1", "protein_name": "Eukaryotic translation initiation factor 4G1, isoform B", "gene_name": "eIF4G1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MQQAIPTLPTQSDIDKAMQPHSAQNMILPANKKTKKYDQQVPTSKPQSLHQPLQPQHSHPTAQPQFQINKAYNVVSILKASAQIAQQSPHLTNQQHPPIHHPQQTQQHQQSYTNVVNRSLSASEPVRAQSSVICNGSSILTVNSRQLNSGDMNSTAIYNISSYRKLTGSLDGNVCFLNVQDIKQNGNISGSVVSNKSIVGVGSEKSSCTGVSINNQIVLPNAQIGTSMGIAGTTTAGTSYMHEKNIVGVSVNCVNTSKKYDFNNSSLLSNNSYPASTAEYVSTGNNNSGNTRSNPQSGGIFRGPPSTPNAPRGASGGATRHVHVQPMYSQPLHQNMVLQQYTQYNPRQQTFPASHLQYAPAPMPYYQYQYVPTLQQQPPHTRSAVTVNTNVNVGNNLQPVQSGPNGPLPVPGASSSQIQLLTSTVQPGASTVMGVGGPGSTMGQVGVPPMVGVGVMTTSVQPQPVQVQPASRRRHQHRLQIIDPTTKKNILDDFDKTKSNTDNEFSDQVTSTNTPATVLSEGPIRIPQQESVGLNNLTSTSSQGSESRTNAPYIPIETTPISRTDVGPTPIVSAMTDAPSVEILPTPQRGRSKKIPIVSPKNVSESIVAPITDETDDAGSTPISRATEESMPPNQTHPNLLISDSSKHKQAVSNSEISKDAPTGLKEMHVAELESSVASENHPAGILDVNVNKSSQSLDFSADPEIDSIGAISPTSPNAVSPILHEVLDNTELSKKLENSTTERFKDSQSVEKPTHQELSLRNATDETEISAMALQDVNSLDNNQIEKTYPSKPKLNVDVSEDISSRESAIKSTSTKNTGVDVGLQSDSKPETTLNDKQDSTDLKVKVSAKISSIINYNEGQWSPNNPSGKKQYDREQLLQLREVKASRIQPEVKNVSILPQPNLMPSFIRNNNNNKRVQSMVGIIGNRSNESAGNYIGKQMSMSGVQSGGGRSSMKGMIHVNLSLNQDVKLSENENAWRPRVLNKSDGDSDAKSALEKDELVRRVRGILNKLTPERFDTLVEEIIKLKIDTPDKVDEVIVLVFEKAIDEPNFSVSYARLCQRLAAEVKVIDERMESETKSNSAHFRNALLDKTEQEFTQNVSQSTAKEKKLQPIVDKIKKCTDANEKAELEAFLEEEERKIRRRSGGTVRFIGELFKISMLTGKIIYSCIDTLLNPHSEDMLECLCKLLTTVGAKFEKTPVNSKDPSRCYSLEKSITRMQAIASKTDKDGARVSSRVRFMLQDVIDLRKNKWQTSRNEAPKTMGQIEKEAKNEQLSAQYFGTLSSTTPGGSQGGSGKRDDRGNSRYGESRSSSAYGGSHSQRGDNGNLRHQQQNNVGGNVSGGAGHSNGNNDENTWHVQTSKGSRSLAVDSNKLEGLSKLSDQNLETKKMGGLTQFIWISSDTTRLSSAPTPTPSNPFAVLSSLIDKNSNERDRDRSGPRNKGSYNKGSMERDRYDRGMHSRTGSSQGSRENSSSRGGQQGRTLLSSSVQKSTSHSKYTQQAPPTRHTVKAQSSVGSSNVNTGPLYRGSEQQTSATFSQTTRSVAPVAVFIEASETDLKLIKSVVSEIVDLSAASKEVTPGAVSCIKRVPEKLRCSFIYYILTDYLHLANVGKQYRRYLSIAVSQLIQQNYISADHLRLAYNEFTVYANDLIVDIPELWLYILQFAGPLIVKKILTISDLWNNNLKENSPSNVAKKFLKTYLIYCTQEVGPNFARNMWIKFNLKWSDFMPESEVADFIKFNRLEYVENESKSPVIDHRETPEKHVKNVIDHIEHLLKEGTTADCIIDYSNGNIMVVDKLFIRGLTETLSNFSIHYKDNSYKLESETFQKFCIPVLQRYIDSNEDHQLECLYTLQLLVHGLEHPRGLLSELIGELYDAFVIQKESLCKWRDSKDQSAGKGVAVKSLNPFFNSLLNDDAN", "length": 1919 }, "evidence": [ { "id": "A0A287AF76", "url": "https://omabrowser.org/oma/group/A0A287AF76/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O43432-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 3", "gene_name": "EIF4G3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"MNSQPQARSPFFQRPQIQPPRAAIPNSSPSIRPGVQTPTAVYQANQHIMMVNHLPMPYPVTQGHQYCIPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGPGDFANAYGTPFYPSQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPASTPTPPQQLPSQVPEHSPVVYGTVESAHLAASTPVTAASDQKQEEKPKPDPVFQSPSTVLRLVLSGEKKEQAGQMPETAAGEPTPEPPRTSSPTSLPPLARSSLPSPMSAALSSQPLFTAEDKCELPSSKEEDAPPVPSPTSCTAASGPSLTDNSDICKKPCSVAPHDSQLISSTILINEMNGVGEKLSAKENTVGMLRQEVLPLTLELEILEHPQEELKVECTPTPIAPSMLPAFSPAPPTPPTSPPCPPVVLSAAIARSPAVATEVQRVADEGESLRTCLSKDAKEMQDKAESESDGQAEETADPQSLHSGRSPAPVQTATTAPKSWKKTKEQTRTPDEVLEAEAEPKAEEELAVDSVLEPEQEKMSQGFPSERDPSALKRGKAEEGNGEEAEPVRNGAESASEGEGGDGNSGSADSSADGLTFPFKAESWKPADTEGKKQYDREFLLDIQFMPACIQKPEGLPPISDVVLDKINQPRLSMRTLDPRILPRGPDFTPAFADFPRQTPGGRGVPLLNVGPRRSQPGQRREPRKIITVSVKEDVHLRKAENAWKPSQKRDSHADDPESIKTQELFRKVRSILNKLTPQMFNQLMKQVSALTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQRKVQQLMTKEKRRPGVQRVDEGGWNTVQGAKNSRVLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASESDALRSSASSLNRFSPLQPPAPSGSPSATPLEFDSRRALTSRGSMGREKSDKPIPAGTARPNTFLRGSSKDLLDNQSQEEQRREMLETVKQLTGGLDAERASTEADRSKTRELAKSEMCAVPAPDKPALSEEEVERKSKSIIDEFLHINDFKEATQCIEELSAQGPLHVFVKVGVEFTLERSQITRDHMGHLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGISMRELIVEFSKPLLPVGRAGVLLSEILHLLCRQMSHKKVGALWREADLSWKDFLPEGEDVHHFLLEQKLDFTESEGPCSSEALSKKELSAEELSQRLEKLIMEEKADDERIFDWVEANLDESQMSSPTFLRALMTAVCKAAIIADCSTFRVDTAVIKQRVPILLKYLDSDTEKELQALYALQASIVKLDQPANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQAGKGVALKSVTAFFTWLREAEEESEDN", "length": 1579 }, "evidence": [ { "id": "A0A287AF76", "url": "https://omabrowser.org/oma/group/A0A287AF76/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF76", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76" } ], "pmid": "" }, { "name": "translation initiation factor activity", "id": "GO:0003743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003743", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF76", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF76", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of translation", "id": "GO:0006417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006417", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF76", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76" } ], "pmid": "" }, { "name": "translational initiation", "id": "GO:0006413", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006413", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF76", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "eukaryotic translation initiation factor 4F complex", "id": "GO:0016281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016281", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF76", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1235, "end_pos": 1237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1268, "end_pos": 1270, "annotation": "n_glycosylation_sequon" }, { "start_pos": 510, "end_pos": 512, "annotation": "n_glycosylation_sequon" }, { "start_pos": 98, "end_pos": 100, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AF76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76" }, { "id": "PS51366", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51366" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MI", "eco_id": "ECO_0000259", "start_pos": 1294, "end_pos": 1416, "start_aa": "Glu", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AF76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AF76" }, { "id": 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AF81-1", "uniprot_ac": "A0A287AF81", "uniprot_id": "A0A287AF81_PIG", "mass": { "chemical_mass": 26076.0, "monoisotopic_mass": 26076.0 }, "refseq": {}, "gene_names": [ { "name": "CAMTA2", "type": "recommended", "evidence": [ { "id": "A0A287AF81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81" } ] }, { "name": "SPAG7", "type": "recommended", "evidence": [ { "id": "A0A287AF81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81" } ] }, { "name": "SPAG7", "type": "synonym", "evidence": [ { "id": "A0A287AF81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81" } ] } ], "protein_names": [ { "name": "Sperm-associated antigen 7", "type": "recommended", "evidence": [ { "id": "A0A287AF81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AF81", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CAMTA2", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81", "locus": { "chromosome": "12", "start_pos": 51948705, "end_pos": 51931802, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017902", "url": "https://www.ensembl.org/id/ENSSSCG00000017902" } ] } } ], "crossref": [ { "id": "A0A287AF81", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AF81", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017902", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017902", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02636", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02636", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511958", "url": "https://www.ncbi.nlm.nih.gov/gene/100511958", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017330", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017330", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A8W4F9C5", "url": "https://www.orthodb.org/?gene=A0A8W4F9C5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13498", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13498", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13498:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13498:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01424", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01424", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AF81", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AF81-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9C5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9C5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9C5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADLLGSILSSMEKPPSLGDQETRRKAREQAARLKKLQEQEKQQKVEFRKRMEKEVSDFIQDSGQIKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDECRYVMIFKKEFAPSDEELDSYRRGEEWDPQKAEEKRRLKELAQRQEEEAAQQGPVVVSPASDYKDKYSHLIGKGAAKDAAHMLQANKTYGCVPVANKRDTRSIEEAMNEIRAKKRLRQSGEELPPTS", "length": 227, "header": "tr|A0A287AF81-1|A0A287AF81_PIG Isoform 1 of Sperm-associated antigen 7 OS=Sus scrofa OX=9823 GN=CAMTA2 PE=4 SV=3 CANONICAL=A0A287AF81-1" }, "isoforms": [ { "isoform_ac": "A0A287AF81-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81/entry#A0A287AF81-1", "sequence": { "sequence": "MADLLGSILSSMEKPPSLGDQETRRKAREQAARLKKLQEQEKQQKVEFRKRMEKEVSDFIQDSGQIKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDECRYVMIFKKEFAPSDEELDSYRRGEEWDPQKAEEKRRLKELAQRQEEEAAQQGPVVVSPASDYKDKYSHLIGKGAAKDAAHMLQANKTYGCVPVANKRDTRSIEEAMNEIRAKKRLRQSGEELPPTS", "length": 227, "header": "tr|A0A287AF81-1|A0A287AF81_PIG Isoform 1 of Sperm-associated antigen 7 OS=Sus scrofa OX=9823 GN=CAMTA2 PE=4 SV=3 CANONICAL=A0A287AF81-1" }, "locus": { "chromosome": "12", "start_pos": 51953276, "end_pos": 51948921, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049979.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049979.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042646.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042646.3" } ] } }, { "isoform_ac": "A0A8W4F9C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81/entry#A0A8W4F9C5-1", "sequence": { "sequence": "MEFLGEGSDLSHICGNAGSFNPLCLARDQTCVLVLQRCCRSHCASAGTPGLSFFGKCLERGEAWKPGARRAGKGVGGRGGERGIGVEPSSCVFFPFPCTKMEKEVSDFIQDSGQIKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDECRYVMIFKKEFAPSDEELDSYRRGEEWDPQKAEEKRRLKELAQRQEEEAAQQGPVVVSPASDYKDKYSHLIGKGAAKDAAHMLQANKTYGCVPVANKRDTRSIEEAMNEIRAKKRLRQSGEELPPTS", "length": 276, "header": "tr|A0A8W4F9C5-1|A0A287AF81_PIG Computationally mapped isoform of Sperm-associated antigen 7 OS=Sus scrofa OX=9823 GN=CAMTA2 PE=4 SV=1 CANONICAL=A0A287AF81-1" }, "locus": { "chromosome": "12", "start_pos": 51953276, "end_pos": 51951733, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096124.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096124.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075879.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075879.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F9C5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9C5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF81", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF81", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF81", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AF81-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 227, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AF81-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AF81" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AF81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AF81" }, { "id": "PS51061", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "R3H", "eco_id": "ECO_0000259", "start_pos": 46, "end_pos": 109, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 186, "end_pos": 188 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AF91-1", "uniprot_ac": "A0A287AF91", "uniprot_id": "A0A287AF91_PIG", "mass": { "chemical_mass": 142620.0, "monoisotopic_mass": 142620.0 }, "refseq": { "ac": "XP_020944451", "name": "DENN domain-containing protein 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944451" }, "gene_names": [ { "name": "DENND3", "type": "recommended", "evidence": [ { "id": "A0A287AF91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91" } ] }, { "name": "DENND3", "type": "synonym", "evidence": [ { "id": "XP_020944451", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944451" } ] } ], "protein_names": [ { "name": "DENN domain-containing protein 3", "type": "recommended", "evidence": [ { "id": "A0A287AF91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91/entry#names_and_taxonomy" } ] }, { "name": "DENN domain-containing protein 3", "type": "synonym", "evidence": [ { "id": "XP_020944451", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944451" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AF91", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DENND3", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91", "locus": { "chromosome": "4", "start_pos": 2530649, "end_pos": 2578098, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030831", "url": "https://www.ensembl.org/id/ENSSSCG00000030831" } ] } } ], "crossref": [ { "id": "A0A287AF91", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AF91", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030831", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030831", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155273", "url": "https://www.ncbi.nlm.nih.gov/gene/100155273", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051696", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051696", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057977", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057977", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155273", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155273", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CSRDSIM", "url": "https://omabrowser.org/oma/group/CSRDSIM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AF91", "url": "https://www.orthodb.org/?gene=A0A287AF91", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12296", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12296", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12296:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12296:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25570", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25570", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8876198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020944451", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944451", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AF91", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AF91-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEAAPQHLELPWGLLELCALLGPPRDSLRGPEQGAQKKGAKSPPSLAPEVLSVFVPPFVSKEDSAAAAAGASSGTLGKAKRRSFRRKRDRPRAEPGRGPRGAEPEDASIPDGVDLLALPQLCFPGGVRVASEPEEDRVHFLVLTDVCGNRTHGVVAQYYRPLHDKHCFYNGKTQWEASGPSGGAAGCFVPFAVCVVSRFPYYNALKDCLSCLLTHLKLCKDFEVDNHIKDFAAKLSLIPSPPPGPLHLVFNMKPLQIVFPSRADPESPLVDLDLHLPLLCFRPEKVLQILTCLLTERRLVFFSSSWALLTLVAECFMAFLHPLQWQHTFVPILSRQMLDFVMAPTSFLMGCHLDHFAEVSKEADGLILINIDTGSITSSNSEDADVPDIPLLAAQTFIQSIQSLQLHHELHLAHLCASTDLNEGRASRRAWQHRLNCQIQQISLQLLVSIFREVKNHLNYEHRVFNSEEFLKTRAPGDQQFYKQVLETYMFHAFLKARLSRRMDAFAQMELHTQSEEDRINGTLLSPRRPTIEKMASRKSTLLQAAPRRKVVSMPDLQVIAVPELLPRNSSLRKIHTADGGGSHAAVSLALQPTYTFKIPEVHFPLLAQCVQVFYEDCVAQLSKAMVSLAPENSVLLARYFYLRGLVQLMQGRLLGALLDFQSLYKTDVHIFPADLVQRTVESLSGPERTQAERMPELRRLISEVMDKPVDAPKADDRVKNFELPKTHLQLDDFVKRVQESGVVKDTGVIHRLFEALTVGQQKQIDPETFREFYNCWKEAEAEAQEVSLPLSALEHLDKNECVYKLSSSVKTSLGVGKIAMTQKRLFLLTEGRPGYVEIATFRDMEEVRSTTVAFLLLRIPTLKIKTASKKEVFEANLKTECDLWHLMVKEMWAGKKLADEHKDPQYVQQALTHVLLMDAVVGTLQSPGAIYAASKLSHFDKLRSEMPMVVPKTTSETLKHKINPSAGETAPRAVDVLLYTPGHLDPAEKVEDAHPKLWCALNGGKVVVFDASSWTIHQHCFKVGNSKLNCMVMVEQSQVWVGSEDSVIYIINVHSMSCHKQLTDHRASVTGLVVQDGAPSAVYSCSADGTVLAWNVSSLRVTSRFQVPGDGLSSITLYRDRLWCCAGNSIVVMTANGFLRQELKIDEGFKDRSAFLAFQLLHEQEQLWAACSRYDSIYVWSLEDLARPPQRVCLRDCSAITCMIRVKQQIWVGGTGLSQGRPKGKIYVIDAERRTVEKELVAHADTVKTLCSAEDRYVLSGSGCEEGKIAIWKVE", "length": 1277, "header": "tr|A0A287AF91-1|A0A287AF91_PIG Isoform 1 of DENN domain-containing protein 3 OS=Sus scrofa OX=9823 GN=DENND3 PE=4 SV=1 CANONICAL=A0A287AF91-1" }, "isoforms": [ { "isoform_ac": "A0A287AF91-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91/entry#A0A287AF91-1", "sequence": { "sequence": "MAEAAPQHLELPWGLLELCALLGPPRDSLRGPEQGAQKKGAKSPPSLAPEVLSVFVPPFVSKEDSAAAAAGASSGTLGKAKRRSFRRKRDRPRAEPGRGPRGAEPEDASIPDGVDLLALPQLCFPGGVRVASEPEEDRVHFLVLTDVCGNRTHGVVAQYYRPLHDKHCFYNGKTQWEASGPSGGAAGCFVPFAVCVVSRFPYYNALKDCLSCLLTHLKLCKDFEVDNHIKDFAAKLSLIPSPPPGPLHLVFNMKPLQIVFPSRADPESPLVDLDLHLPLLCFRPEKVLQILTCLLTERRLVFFSSSWALLTLVAECFMAFLHPLQWQHTFVPILSRQMLDFVMAPTSFLMGCHLDHFAEVSKEADGLILINIDTGSITSSNSEDADVPDIPLLAAQTFIQSIQSLQLHHELHLAHLCASTDLNEGRASRRAWQHRLNCQIQQISLQLLVSIFREVKNHLNYEHRVFNSEEFLKTRAPGDQQFYKQVLETYMFHAFLKARLSRRMDAFAQMELHTQSEEDRINGTLLSPRRPTIEKMASRKSTLLQAAPRRKVVSMPDLQVIAVPELLPRNSSLRKIHTADGGGSHAAVSLALQPTYTFKIPEVHFPLLAQCVQVFYEDCVAQLSKAMVSLAPENSVLLARYFYLRGLVQLMQGRLLGALLDFQSLYKTDVHIFPADLVQRTVESLSGPERTQAERMPELRRLISEVMDKPVDAPKADDRVKNFELPKTHLQLDDFVKRVQESGVVKDTGVIHRLFEALTVGQQKQIDPETFREFYNCWKEAEAEAQEVSLPLSALEHLDKNECVYKLSSSVKTSLGVGKIAMTQKRLFLLTEGRPGYVEIATFRDMEEVRSTTVAFLLLRIPTLKIKTASKKEVFEANLKTECDLWHLMVKEMWAGKKLADEHKDPQYVQQALTHVLLMDAVVGTLQSPGAIYAASKLSHFDKLRSEMPMVVPKTTSETLKHKINPSAGETAPRAVDVLLYTPGHLDPAEKVEDAHPKLWCALNGGKVVVFDASSWTIHQHCFKVGNSKLNCMVMVEQSQVWVGSEDSVIYIINVHSMSCHKQLTDHRASVTGLVVQDGAPSAVYSCSADGTVLAWNVSSLRVTSRFQVPGDGLSSITLYRDRLWCCAGNSIVVMTANGFLRQELKIDEGFKDRSAFLAFQLLHEQEQLWAACSRYDSIYVWSLEDLARPPQRVCLRDCSAITCMIRVKQQIWVGGTGLSQGRPKGKIYVIDAERRTVEKELVAHADTVKTLCSAEDRYVLSGSGCEEGKIAIWKVE", "length": 1277, "header": "tr|A0A287AF91-1|A0A287AF91_PIG Isoform 1 of DENN domain-containing protein 3 OS=Sus scrofa OX=9823 GN=DENND3 PE=4 SV=1 CANONICAL=A0A287AF91-1" }, "locus": { "chromosome": "4", "start_pos": 2577966, "end_pos": 2531658, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037658.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037658.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042511.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042511.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF91", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155273", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155273", "resource": "KEGG Pathway" }, { "id": "R-SSC-8876198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "resource": "Reactome", "description": "RAB GEFs exchange GTP for GDP on RABs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NUL1-1", "protein_name": "DENN domain-containing protein 3", "gene_name": "DENND3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEDALPSGLLEVCLLVGVPREQLRTQLQDAQRKPRSLLPLDPEVLSVFVPPLISRDDIHSTNTSGSNFNRGKRRSFRKKKERPKLENAKTVNGEQKAPGTEDITVPKDIDLIGLPQLCFPGGLFITSEPREDHIHFLVFTDVCGNRTYGVVAQYYQPMQDGCIASNGQTQWESVRAGKKPGCFVPLAICVISRYPYFNALKDCLSCLLVQLRSVKDLDIDDHIKEFAAKLFLIPSPPPGPLHLVFNMKPLQIIIPSREDPDSPVIDLDLHLPLLCFKPEQVLQIMTCILTERKMVFFSSDWALLTLVAECFMLYLHPLQWQHTFVPLLSRHMLDFVMAPTSFLMGCHADHFEEVSTEGEDLILINIDDGNISHSKMVEEEPEIPDVPAQAAETFKKRVESLQLHYDLELCHLRATTDLGELQMRRRAWQQKLNTEVQQMTLQLIVNIFREVKDHLNYEHRVFNSEEFLKTRATGDQPFYGKVLETYMFHSFLKARLNRKMDAFARLELSTQSEEDRFNLMFRAPRRLTMEKMASKRFNSQNIINRRMVISMPNLQDIKLPESPTRKSSLRRIETSIAMKKPSKSVSTFKIPEIHFPLMSHCVHSYYTEFFNHLSKAINTLAPDNSALLARYFYLRGLISLMQGKLLNALSDFQNLDKTDLRIFPTELVRKIVETLPPSERFQADRKPELKRLISLVMEQQREVTKIDDHVKHFELPKTHMQLHDFVKRIQESGIVRDTDTIHRLFDALTVGQQKQIDPETFRDFYNYWKETEAEAQEVNLPPAVIEHLDKNECVYKLSCSVKTNYGVGKIALTQKRLFLLTEGGRPGYVHIAAFREIEDVKNTTVAFLLLRIPTLRIETIYKKQVFEANLKTECDLWYLIVKEMWAGKKMADDHKDPQYIQQALTNVLLMDAVVGALQSSKAIYAASKLSYFDRMKNEVPMMIPKTTSETLKHKINPSAGETFPQAIDVLLYTPGHLDISERPDNAHPKLWCALNEGKVVVFDASTWTIQQHCFRMGRCKLTCMVMVEQSQVWIGSQDSIIYIINTHSMSCNKQLNDHRSGITDIVVEKRNGIPSEAYSSSLDGTVIAWNINTLKVNRAFQLPCQNLTSIKLHNDQLWCCTGSCIFVMSTYEFRLQMKIEHHLKDVCSYFLCFQLFPERNEVWASYSGSSDLYIWNTKDFASTPQKIHLQDCSEITCMIQVKNQMWVGSSGTSQGKIKGKIYVISAEKKTVEKELFGHADTVKALCSAEDRYVLSGAGKEEGKIAIWKVE", "length": 1270 }, "evidence": [ { "id": "A0A287AF91", "url": "https://omabrowser.org/oma/group/A0A287AF91/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8M9P256-1", "protein_name": "DENN domain-containing protein 3", "gene_name": "dennd3a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADNVPCGLLEACVLLGVSNERLKELCPGKDADVLVEAEVLQVHAPPFITKDRSCNGGVDQGVAPAFSRVQKRRSFKKKKRERPVSTLSNSSQASESEELSVPQNIDLIALPQLCFPDGLRITNESREDSYHFLVFTDVFGNQTHGVVAQYCRPVQFQQDNVIYANGHRTNEHKRLYTTFSICVISKYPYYNALRDCLSCFLFQMKTSRVSDFDEQVKEFSAKLALVPIPPSGPLHVVFNLRPLQIELPSRLDVDRPVMDLDLHLPFLCFKPKQILQIISSILMEQRVVFLSTDWAKLTLVSECFMIFIHPLRWQHPFVPVLSRQMLDFIMAPTAYLMGCHTYHFQEVAEEIEDLVLIDIDQGTVSSSTSDRFDLPDVPLAARDCFIFRCGGLQLHYDLDVCGSSSQTDVNDLRAHRRLWQRKLNSSILNISMELIVNIFSEVCDFLNYEHRVFNSEEFLRSRDSTDSAFYRKVLDTHIFHSFLRERLNRKNDAFTRMQLNIRSETRRLKIMTESPRRPTMEEINRKHRAENGLNKRLGMSMPNLADSRSLTVPIRQMSMMSVRMPLQMGSWSPIKPVKTFKLPEFPPPLAYHYVQNYYHDLIGQLDRSISSASPDDSALLARYYYLRGLVNSVTGRHVDALADFQSLYKTDMEIFPAQLLNTLVEALPVEEKRIAERRTDLKRLMSRVRRENEKDRARLVDGGTVKRFELPKKHLQKEDFVRRVQESGIVKDLETIKRLFEALTLGVEDSCRSVFYLELDGQVKQVDPETFRFFYNFWKETEAAAQDVDLPAVVLEHLENDECVYKVSSSVKTSHGVGKIAMTQRRLFLLTEGRPGYVEITKFRDIEDVRISSAPFLLLRIPSLKIRTSLRRESFEANLKSECDLWHLMIKEMWAGRKMADQHKDPQFMEQALTNALLMDAVVGSLQSQKAIYAATKLAYFDKMKSEVPMMVPKTTSDTLKHKINPSLDQTSPQAVDVLLYTPGQLGVSDVDGGGNPKLWCALSDGKLLVFDAASWSMQHNSVQVGTSRLTCMLAVNEQQLWIGSKDSFIYIINPRSVSCNKQLTEHRCELTGLALEERADKFSQTVAYSCSEDCNVIVWDVSSLQVRRQFRVSCGRLQSMHVHNGMLWCCGRDCVLEVRRNGSVHRRISLPDHLLSSPKGFSSFLLFNESEQLWAGFADAGELCVWHCRDISKPFIRIQLKDCAAVTCMIRVKNQIWVGGYNGSVTDRRVRGKIYIVNTDRYTVEKELQAHADAVQTMCSAEDRYVLSGAAQDDGKIGIWKVE", "length": 1285 }, "evidence": [ { "id": "A0A287AF91", "url": "https://omabrowser.org/oma/group/A0A287AF91/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A9J7FG86-1", "protein_name": "DENN domain-containing protein 3", "gene_name": "Dennd3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEPTARHLSLPSGLLELCALLGASQDSLRGLEQIGQKRGLKSVSSLAPEVLSVFVPPFTTQDDGQVSENSCMLSKTRRRSFRKKREKPRIEYWKSHPGDSKGPDSEDVTIPGGVDLLALPQLCFPGGVCVAPEPKEDYIHFLVLTDVCGNRTYGVVAQYYRPLHDEYCFYNGKTHWEPSVSSARRFVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFAARLSLIPCPPPGPLHLIFNMKPLQVVFPSRADPESPIIDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLIAECFVVYLHPLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKEADGLILIDIDHGSVTCSKSSDNDIDIPDVPLLLAQTFIQRVQSLQMHPDLHLAHLSSSTDLNEGLARRRAWQQTLNCKIQHISLQLLVGIFREVKNHLNYEHRVFNSEEFLKTRAAGDQQFYKQVLDTYMFHSFLKARLNGRMDAFARMDLDTQSEEDRIDRMLISPRRPTVEKMTSRKSSPLHVTHRRMVVSMPNLQDISLPELPPRNSSLRIMDTSSCKSSSSVFKVTPKSTYTFKIPEIHFPLMNQCVQAYYTDLITLLSKAMSLLGPGDSLLLARYFYLRGLIQVMQGQLLSALLDFQNLYKTDIGIFPADLVKSMVESMSASEWAQAERTPELRRLITEVLDKPGETPKADDAVKNFELPKKHMQLNDFVKRVQESGIVKDAVIIHRLFDALTVGHEKQIDPETFRDFYTCWKETEAEAQEVSLPALLTDHLDKNECVYKLSSSVKTNRGVGKIAMTQKRLFLLPEGRPGYVEIATFRNIEEVKNTTVAFLLLKIPTLKIKTVAKKEVFEANLKSECDLWHLMVKEMWAGKKLADDHKDPQYVQQALTNVLLMDAVVGTLQSPSAIYAASKLAYFDKMRSEMPMAVPKTTSETLKHKINPSAGETAPQAVDVLLYTPGRLDPAEKVEDAHPKLWCALNEGKVVVFDASSWTIHQHCFKVGASKVNCMVMAEHSQVWVGSEDSVIYIINVHSMSCNKQLTDHRAAVTGLVVQNGKKPSEVYSCSLDGTVLAWNVSTLRVTSRFQLPYGDLMSISLHNDCLWCCTGHSLVVVTMQGFHRHELKINSPYKASTSLLAFQLLPEKEQLWVACAGCSDLYIWSLKDLGQPPRKTHLQDCTEVSCMIRVKRQIWVGGRGLSQGKPRGKIFVMDVEKMTVEKELVAHSDTVKTLCSAEDRYVLSGAGHEEGKIAIWKVE", "length": 1278 }, "evidence": [ { "id": "A0A287AF91", "url": "https://omabrowser.org/oma/group/A0A287AF91/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A2RT67-1", "protein_name": "DENN domain-containing protein 3", "gene_name": "Dennd3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEPAARHLSLPSGLLELCALLGASQDSLRGLEQIAQKRGVKSASSLVPEVLSVFVPPFTTKEDGQVPGASCALGKGRRRSFRKKREKPRMEPWKSHPGDSKGPDSEDVTIPGGVDLLALPQLCFPGCVCVASEPKEDYIHFLVLTDVCGNRTYGVVAQYYRPLHDEYCFYNGKSHWEPSVISARCFVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFAARLSLIPSPPPGPLHLIFNMKPLQVVFPSRADPESPIVDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLMAECFVAYLHPLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKEADGLVLIDIDHGSVTCSKSSDDNIDIPDVPLLLAQTFIQRVQSLQLHPDLHLAHLSASTDLNEGRARRRAWQQTLNCKIQHITLQLLVGIFREVKNHLNYEHRVFNSEEFLKTRAAGDQQFYKQVLDTYMFHSFLKARLNGRMDAFARMDLDTQSEEDRIDRMLISPRRPTVEKMASRKASPLHITHRRMVVSMPNLQDISLPELPPRNSSLRIMDTSNCRSSSPVLKVTPKSTYMFKIPDIHFPLESQCVQAYYTDFVTLLSKAMALLGPGDSLLLARYFYLRGLLHLMQGQLLSALLDFQNLYKTDIGIFPADLVKRTVESMSASERAQAERTPELRRLITEVFDKHGEAPKADDAVKNFELPKKHMQLNDFVKRVQESGIVKDAVIIHRLFDALTFGHEKQIDPETFRDFYTCWKETEAEAQEVSLPALLMEHLDKNECVYKLSSSVKTNRGVGKIAMTQKRLFLLTEGRPGYVEIATFRNIEEVKNSTVAFLLLRIPTLKIKTVAKKEVFEANLKSECDLWHLMVKEMWAGKQLADDHKDPQYVQQALTNVLLMDAVVGTLQSPSAIHAASKLAYFDNMKKKSPMAVPKTTSETLKHKINPSAGETAPQAIEVLLYTPGRLDPAEKVEDAHPKLWCALNEGKVVVFDASSWTVHQHCFKVGSSKVNCMVMAEHNQVWVGSEDSVIYIINVHSMSCNKQLTDHRSPVTGLAVHNGKKPSEIYSCSLDGTVIAWNVSTLRVISRFQLSYGDLLSISLHNDRIWCCTVHKILVVTPQGFVRQELKHPKDASFLAFQLLPEEQQLWAASTGVSELYMWSLKDLDQPPQKTYLQDCSEVTCMIRVKRQIWVGGRGLSQGKTRGKIYVMDVEKVTVEKELVAHLDTVRTLCSAEDRYVLSGAGQEEGKIAIWKVE", "length": 1274 }, "evidence": [ { "id": "A0A287AF91", "url": "https://omabrowser.org/oma/group/A0A287AF91/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D4A2H4-1", "protein_name": "DENN domain-containing protein 3", "gene_name": "Dennd3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTPGFVRSHWKPRAGHPAAARHSACHLFCFSAFGPPGPRRARPAAPDPAASRAPAPRPPQPSGPGLTRSEAGARWGPCPPKPAPRPAPPNALSPRLRGLEQIAQKRGVNGASSLVPEVLSVFVPPFTTKEDGQVVGASCTLSKGRRRSFRKKREKPRMESWKSHPGDSKGPDSEDVTIPGGVDLLALPQLCFPGGVCVASEPKEDYIHFLVLTDVCGNRTYGVVAQYYRPLHDEYCFYNGKSHWEPSMSSARRFVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFAARLSLIPSPPPGPLHLIFNMKPLQVVFPSRADPESPIIDLDLHLPLLCFRPEKVLQILTCILTEQRMVFFSSDWALLTLMAECFVAYVHPLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKEADGLVLIDIDLGSVTCSKSSDEDVDIPDVPLLLAQAFIQRVQSLQLHPDLHLAHLSASTDLNEGRARRRAWQQALNCKIQHITLQLLVGIFREVKNHLNYEHRVFNSEEFLKTRAAGDQQFYKQVLDTYMFHSFLKARLNGRMDAFARMDLDTQSEEDRIDRMLISPRRPTVEKMASRKASPLNIAHRRMVVSMPNLQDISLPELPPRNSSLRIMDTSSCKSSSPVLKVTPKSTYTFKIPEIHFPLVSQCVQAYFTDLVTLLSKAMALLGPGDSLLLARYFYLRGLIHLMQGQLLNALLDFQSLYKTDIRIFPADLVKGMVDSMSASERAQAERTPELRRLITEVFDKQGEAPKVDDAVKNFELPKKHMQLNDFVKRVQESGIVKDTTIIHRLFDALTVGHEKQIDPETFRDFYTCWKETEAEAQEVSLPALLVDHLDRNECVYKLSSSVKTNRGVGKIAMTQKRLFLLPEGRPSYVEIATFRNIEEVKSTTVAFLLLKIPTLKIKTVAKKEVFEANLKSECDLWHLMVKEMWAGKKLADDHKDPQYVQQALTNVLLMDAVVGTLQSSGAIYAASKLAYFDKMKNELPMAVPKTTSETLKHKINPSAGETAPQAIEVLLYTPGRLDPAEKVEDAHPKLWCALNEGKVVVFDASSWTIHQHCFKVGSSKVNCMVMAEHSQVWVGSEDSVIYIINVHSMSCNKQLTDHRSAVTGLAVPSGKKPSAVYSCSLDGTVLAWNVSTLRVISRFQLQHGDLMSISLHNDRVFCCTARSILVVTLQGFVRQELRIQPSEEPSASFLAIQLLPEEQQLWVACTGVSELYIWSLKDLGQPPQKTHLQDCTEVTCMIRVKRQIWVGGRGLSQGKTRGKIYVMDVEKVTLEKELVAHSDTVRTLCSAEDRYVLSGAGGEEGKIAIWKVE", "length": 1345 }, "evidence": [ { "id": "A0A287AF91", "url": "https://omabrowser.org/oma/group/A0A287AF91/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of Rab protein signal transduction", "id": "GO:0032483", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032483", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF91", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91" } ], "pmid": "" }, { "name": "endosome to lysosome transport", "id": "GO:0008333", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008333", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF91", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91" } ], "pmid": "" }, { "name": "protein catabolic process", "id": "GO:0030163", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030163", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF91", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF91", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF91", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1097, "end_pos": 1099, "annotation": "n_glycosylation_sequon" }, { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 522, "end_pos": 524, "annotation": "n_glycosylation_sequon" }, { "start_pos": 570, "end_pos": 572, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AF91-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1277, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AF91-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AF91" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AF91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AF91" }, { "id": "PS50211", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50211" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UDENN", "eco_id": "ECO_0000259", "start_pos": 78, "end_pos": 506, "start_aa": "Gly", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], 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] } ], "sequence": { "sequence": "MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKDSWHGSTRKSSRGAVRTPRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSGLGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSESKEEDSSDVPQVSQASLKANDLSDFQSVSKLNQGKPCTCVGKECQCQRWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQSLHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKKMSHMAEMMYT", "length": 292, "header": "tr|A0A287AFP1-1|A0A287AFP1_PIG Isoform 1 of Oxidative stress-responsive serine-rich protein 1 OS=Sus scrofa OX=9823 GN=OSER1 PE=4 SV=1 CANONICAL=A0A287AFP1-1" }, "isoforms": [ { "isoform_ac": "A0A287AFP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFP1/entry#A0A287AFP1-1", "sequence": { "sequence": "MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKDSWHGSTRKSSRGAVRTPRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSGLGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSESKEEDSSDVPQVSQASLKANDLSDFQSVSKLNQGKPCTCVGKECQCQRWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQSLHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKKMSHMAEMMYT", "length": 292, "header": "tr|A0A287AFP1-1|A0A287AFP1_PIG Isoform 1 of Oxidative stress-responsive serine-rich protein 1 OS=Sus scrofa OX=9823 GN=OSER1 PE=4 SV=1 CANONICAL=A0A287AFP1-1" }, "locus": { "chromosome": "17", "start_pos": 46682430, "end_pos": 46674121, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046335.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046335.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042670.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042670.1" } ] } }, { "isoform_ac": "A0A287AGG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFP1/entry#A0A287AGG5-1", "sequence": { "sequence": "NIIGFSFLSIQKRVCYDVEPKTHQLKKILSLHCEIAETCCVAWSTRKSSRGAVRTPRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSGLGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSESKEEDSSDVPQVSQASLKANDLSDFQSVSKLNQGKPCTCVGKECQCQRWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQSLHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKKMSHMAEMMYT", "length": 271, "header": "tr|A0A287AGG5-1|A0A287AGG5_PIG Computationally mapped isoform of Oxidative stress-responsive serine-rich protein 1 OS=Sus scrofa OX=9823 GN=OSER1 PE=4 SV=2 CANONICAL=A0A287AFP1-1" }, "locus": { "chromosome": "17", "start_pos": 46678904, "end_pos": 46674121, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055914.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055914.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042995.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042995.3" } ] } }, { "isoform_ac": "I3LSU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFP1/entry#I3LSU2-1", "sequence": { "sequence": "MKELRIILVFFESINGNIHSSVKTFTMKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGTSVRASVRTAADDTKLKTTCASKDSWHGSTRKSSRGAVRTPRRRRSKSPVLHPPKFIHCSTIAAASSCQLKHKSQTDSPDGSSGLGISPPKEFNTGECSPSLDSNHTGAVVEPLRTSVPRLPSESKEEDSSDVPQVSQASLKANDLSDFQSVSKLNQGKPCTCVGKECQCQRWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQSLHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKKMSHMAEMMYT", "length": 318, "header": "tr|I3LSU2-1|A0A287AFP1_PIG Computationally mapped isoform of Oxidative stress-responsive serine-rich protein 1 OS=Sus scrofa OX=9823 GN=OSER1 PE=4 SV=2 CANONICAL=A0A287AFP1-1" }, "locus": { "chromosome": "17", "start_pos": 46685069, "end_pos": 46674121, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025121.3", "url": "https://www.ensembl.org/id/ENSSSCT00000025121.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027185.2", "url": "https://www.ensembl.org/id/ENSSSCP00000027185.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LSU2", "url": "https://www.uniprot.org/uniprotkb/I3LSU2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624468", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624468", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HD20-1", "protein_name": "Oxidative stress-responsive serine-rich protein 1", "gene_name": "Oser1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": 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295 }, "evidence": [ { "id": "A0A287AFP1", "url": "https://omabrowser.org/oma/group/A0A287AFP1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5E9A0-1", "protein_name": "Oxidative stress-responsive serine-rich protein 1", "gene_name": "OSER1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKSEAKDGEEESLQTAFKKLRVDASGSIASLSVGEGASVRASVRAAVEDAKPKSACASKDSWHGSTRKSSRGAVRTQRRRRSKSPVLHPPKFIHCSTIASSSSQLKHKSQTDSPDGSSGLGISTPKEFNAGECSSSLDTNHTGAVAEPLRTSVPRLPSESKEEDSSDAPQVSQASLQANDLSDFQSVSKLNLGKPCVCIGKECQCKRWHDMEVYSFSGLQNVPPLAPERRSTLEDYSQSLHTRTLSGSPRSCSEQARVYVDDVTIEDLSGYMEYYLYIPKKMSHMAEMMYT", "length": 291 }, "evidence": [ { "id": "A0A287AFP1", "url": "https://omabrowser.org/oma/group/A0A287AFP1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q703I1-1", "protein_name": "Oxidative stress-responsive serine-rich protein 1", "gene_name": "Oser1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKSEAKDGEEESLQTAFKKLRVDASGSIVSLSVGEGTSVRASVRTTVDDTKPKTMCAPKDSWHGSTRKSSRGAVRIQRRRRSKSPVLHPPKFIHCSTTASPSSSQLKQRSQTEPLDGSSGRGISTPKEFSTGENSTSLDINHTGAAIEPLRSSVLRLPSESKTEELSDATQVSPESLTANDLSDFQSVSKLSQGKPCVCVGKACQCKRWHDMEVYSFSGLQNVPPLAPERRSLEDYSQSLHTRTLSGSPRSCSEQARVYVDDVTIEDLAGYMEYYLYIPKKMSHMAEMMYT", "length": 291 }, "evidence": [ { "id": "A0A287AFP1", "url": "https://omabrowser.org/oma/group/A0A287AFP1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D722-1", "protein_name": "Oxidative stress-responsive serine-rich protein 1", "gene_name": "Oser1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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[ { "id": "A0A287AFP1", "url": "https://omabrowser.org/oma/group/A0A287AFP1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cellular response to hydrogen peroxide", "id": "GO:0070301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070301", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFP1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFP1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFP1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFP1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"PLEKHO2", "type": "synonym", "evidence": [ { "id": "XP_013848345", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848345" } ] } ], "protein_names": [ { "name": "Pleckstrin homology domain containing O2", "type": "synonym", "evidence": [ { "id": "A0A287AFQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AFQ5/entry#names_and_taxonomy" } ] }, { "name": "pleckstrin homology domain-containing family O member 2", "type": "synonym", "evidence": [ { "id": "XP_013848345", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848345" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AFQ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AFQ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLEKHO2", "url": "https://www.uniprot.org/uniprotkb/A0A287AFQ5", "locus": { "chromosome": "1", "start_pos": 107186288, "end_pos": 107218532, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004547", "url": "https://www.ensembl.org/id/ENSSSCG00000004547" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004547", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004547", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13317", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13317", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154769", "url": "https://www.ncbi.nlm.nih.gov/gene/100154769", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154769", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154769", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AFQ5", "url": "https://www.orthodb.org/?gene=A0A287AFQ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15871", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15871", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15871:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15871:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013848345", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848345", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AFQ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AFQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJV1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJV1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3Q3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3Q3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3Q3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3Q3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDK5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDK5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKE8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0B4", "url": "https://www.uniprot.org/uniprotkb/F1S0B4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0B4-1", "url": "https://www.uniprot.org/uniprotkb/F1S0B4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEEGVKEASEKPRGAQTADKAGWIKKSSGGFLGLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRALLKRKHRFILLRSPGNKVSDIKFQAPSGEEKESWIKALNEGINRGKNKAFDEVKVDKSCALEHVTRDRVRGGQRRRPPTRVHLKEVANAASDGLSRLDLDVPDSGPPVFAPSNDVTAVQPRETFQPPMPPTKPSPMPETTSLGDRVETPVGERAPTPVPASSEAHPESREDSETLTGEDSGSEQPPNRVLPDKLKVSWENPSPEEPPNPESVGLVQVPGSETSKAVPKEGGKPPAPPPKILSEKLRASMSGMEASGPAQSPGASDTLAPGPAQVSVNGVDDSPEPVKPSQATDTPGTPPKDSSTSIALPPGDPRPQFHPRCSSLGDLLGEGPRRPRQPGERLYRAQLEVKVASEQTEKLLNKVLGNEPAPVNAETLLSQAVEQLRQATQVLQEIRDLGELSQEAPGLQEKRKELVTLYRRSAP", "length": 499, "header": "tr|A0A287AFQ5-1|A0A287AFQ5_PIG Isoform 1 of Pleckstrin homology domain containing O2 OS=Sus scrofa OX=9823 GN=PLEKHO2 PE=1 SV=1 CANONICAL=A0A287AFQ5-1" }, "isoforms": [ { "isoform_ac": "A0A287AFQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFQ5/entry#A0A287AFQ5-1", "sequence": { "sequence": "MEEEGVKEASEKPRGAQTADKAGWIKKSSGGFLGLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRALLKRKHRFILLRSPGNKVSDIKFQAPSGEEKESWIKALNEGINRGKNKAFDEVKVDKSCALEHVTRDRVRGGQRRRPPTRVHLKEVANAASDGLSRLDLDVPDSGPPVFAPSNDVTAVQPRETFQPPMPPTKPSPMPETTSLGDRVETPVGERAPTPVPASSEAHPESREDSETLTGEDSGSEQPPNRVLPDKLKVSWENPSPEEPPNPESVGLVQVPGSETSKAVPKEGGKPPAPPPKILSEKLRASMSGMEASGPAQSPGASDTLAPGPAQVSVNGVDDSPEPVKPSQATDTPGTPPKDSSTSIALPPGDPRPQFHPRCSSLGDLLGEGPRRPRQPGERLYRAQLEVKVASEQTEKLLNKVLGNEPAPVNAETLLSQAVEQLRQATQVLQEIRDLGELSQEAPGLQEKRKELVTLYRRSAP", "length": 499, "header": "tr|A0A287AFQ5-1|A0A287AFQ5_PIG Isoform 1 of Pleckstrin homology domain containing O2 OS=Sus scrofa OX=9823 GN=PLEKHO2 PE=1 SV=1 CANONICAL=A0A287AFQ5-1" }, "locus": { "chromosome": "1", "start_pos": 107208837, "end_pos": 107188243, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054534.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054534.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042675.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042675.1" } ] } }, { "isoform_ac": "A0A5G2QJV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFQ5/entry#A0A5G2QJV1-1", "sequence": { "sequence": "MTLLPGRVVGVKEASEKPRGAQTADKAGWIKKSSGGFLGLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRALLKRKHRFILLRSPGNKVSDIKFQAPSGEEKESWIKALNEGINRGKNKAFDEVKVDKSCALEHVTRDRVRGGQRRRPPTRVHLKEVANAASDGLSRLDLDVPDSGPPVFAPSNDVTAVQPRETFQPPMPPTKPSPMPETTSLGDRVETPVGERAPTPVPASSEAHPESREDSETLTGEDSGSEQPPNRVLPDKLKVSWENPSPEEPPNPESVGLVQVPGSETSKAVPKEGGKPPAPPPKILSEKLRASMSGMEASGPAQSPGASDTLAPGPAQVSVNGVDDSPEPVKPSQATDTPGTPPKDSSTSIALPPGDPRPQFHPRCSSLGDLLGEGPRRPRQPGERLYRAQLEVKVASEQTEKLLNKVLGNEPAPVNAETLLSQAVEQLRQATQVLQEIRDLGELSQEAPGLQEKRKELVTLYRRSAP", "length": 504, "header": "tr|A0A5G2QJV1-1|A0A287AFQ5_PIG Computationally mapped isoform of Pleckstrin homology domain containing O2 OS=Sus scrofa OX=9823 GN=PLEKHO2 PE=1 SV=2 CANONICAL=A0A287AFQ5-1" }, "locus": { "chromosome": "1", "start_pos": 107202839, "end_pos": 107188243, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089603.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089603.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062332.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062332.2" } ] } }, { "isoform_ac": "A0A5G2QPX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFQ5/entry#A0A5G2QPX1-1", "sequence": { "sequence": "LHSPFTGVKEASEKPRGAQTADKAGWIKKSSGGFLGLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRALLKRKHRFILLRSPGNKVSDIKFQAPSGEEKESWIKALNEGINRGKNKAFDEVKVDKSCALEHVTRDRVRGGQRRRPPTRVHLKEVANAASDGLSRLDLDVPDSGPPVFAPSNDVTAVQPRETFQPPMPPTKPSPMPETTSLGDRVETPVGERAPTPVPASSEAHPESREDSETLTGEDSGSEQPPNRVLPDKLKVSWENPSPEEPPNPESVGLVQVPGSETSKAVPKEGGKPPAPPPKILSEKLRASMSGMEASGPAQSPGASDTLAPGPAQVSVNGVDDSPEPVKPSQATDTPGTPPKDSSTSIALPPGDPRPQFHPRCSSLGDLLGEGPRRPRQPGERLYRAQLEVKVASEQTEKLLNKVLGNEPAPVNAETLLSQAVEQLRQATQVLQEIRDLGELSQEAPGLQEKRKELVTLYRRSAP", "length": 501, "header": "tr|A0A5G2QPX1-1|A0A287AFQ5_PIG Computationally mapped isoform of Pleckstrin homology domain containing O2 OS=Sus scrofa OX=9823 GN=PLEKHO2 PE=1 SV=1 CANONICAL=A0A287AFQ5-1" }, "locus": { "chromosome": "1", "start_pos": 107203162, "end_pos": 107188243, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089006.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089006.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066106.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066106.1" } ] } }, { "isoform_ac": "A0A5G2R3Q3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFQ5/entry#A0A5G2R3Q3-1", "sequence": { "sequence": "MEEEGVKEASEKPRGAQTADKAGWIKKSSGGFLGLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRALLKRKHRFILLRSPGNKVSDIKFQAPSGEEKESWIKALNEGINRGKNKAFDEVKVDKSCALEHVTRDRVRGGQRRRPPTRVHLKEVANAASDGLSRLDLDVPDSGPPVFAPSNDVTAVQPRETFQPPMPPTKPSPMPETTSLGDRVETPVGERAPTPVPASSEAHPESREDSETLTGEDSGSEQPPNRVLPDKLKVSWENPSPEEPPNPESVGLVQVPGSETSKAVPKEGGKPPAPPPKILSEKLRASMSGMEASGPAAPGPAQVSVNGVDDSPEPVKPSQATDTPGTPPKDSSTSIALPPGDPRPQFHPRCSSLGDLLGEGPRRPRQPGERLYRAQLEVKVASEQTEKLLNKVLGNEPAPVNAETLLSQAVEQLRQATQVLQEIRDLGELSQEAPGLQEKRKELVTLYRRSAP", "length": 490, "header": "tr|A0A5G2R3Q3-1|A0A287AFQ5_PIG Computationally mapped isoform of Pleckstrin homology domain containing O2 OS=Sus scrofa OX=9823 GN=PLEKHO2 PE=1 SV=1 CANONICAL=A0A287AFQ5-1" }, "locus": { "chromosome": "1", "start_pos": 107208837, "end_pos": 107188243, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068924.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068924.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068822.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068822.1" } ] } }, { "isoform_ac": "A0A5G2RDK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFQ5/entry#A0A5G2RDK5-1", "sequence": { "sequence": "MGVKEASEKPRGAQTADKAGWIKKSSGGFLGLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRALLKRKHRFILLRSPGNKVSDIKFQAPSGEEKESWIKALNEGINRGKNKAFDEVKVDKSCALEHVTRDRVRGGQRRRPPTRVHLKEVANAASDGLSRLDLDVPDSGPPVFAPSNDVTAVQPRETFQPPMPPTKPSPMPETTSLGDRVETPVGERAPTPVPASSEAHPESREDSETLTGEDSGSEQPPNRVLPDKLKVSWENPSPEEPPNPESVGLVQVPGSETSKAVPKEGGKPPAPPPKILSEKLRASMSGMEASGPAQSPGASDTLAPGPAQVSVNGVDDSPEPVKPSQATDTPGTPPKDSSTSIALPPGDPRPQFHPRCSSLGDLLGEGPRRPRQPGERLYRAQLEVKVASEQTEKLLNKVLGNEPAPVNAETLLSQAVEQLRQATQVLQEIRDLGELSQEAPGLQEKRKELVTLYRRSAP", "length": 496, "header": "tr|A0A5G2RDK5-1|A0A287AFQ5_PIG Computationally mapped isoform of Pleckstrin homology domain containing O2 OS=Sus scrofa OX=9823 GN=PLEKHO2 PE=1 SV=1 CANONICAL=A0A287AFQ5-1" }, "locus": { "chromosome": "1", "start_pos": 107202943, "end_pos": 107188243, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071573.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071573.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072480.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072480.1" } ] } }, { "isoform_ac": "A0A8W4FKE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFQ5/entry#A0A8W4FKE8-1", "sequence": { "sequence": "MEEEDEQKCVETVELGSYEKCQDLRALLKRKHRFILLRSPGNKVSDIKFQAPSGEEKESWIKALNEGINRGKNKAFDEVKVDKSCALEHVTRDRVRGGQRRRPPTRVHLKEVANAASDGLSRLDLDVPDSGPPVFAPSNDVTAVQPRETFQPPMPPTKPSPMPETTSLGDRVETPVGERAPTPVPASSEAHPESREDSETLTGEDSGSEQPPNRVLPDKLKVSWENPSPEEPPNPESVGLVQVPGSETSKAVPKEGGKPPAPPPKILSEKLRASMSGMEASGPAAPGPAQVSVNGVDDSPEPVKPSQATDTPGTPPKDSSTSIALPPGDPRPQFHPRCSSLGDLLGEGPRRPRQPGERLYRAQLEVKVASEQTEKLLNKVLGNEPAPVNAETLLSQAVEQLRQATQVLQEIRDLGELSQEAPGLQEKRKELVTLYRRSAP", "length": 440, "header": "tr|A0A8W4FKE8-1|A0A287AFQ5_PIG Computationally mapped isoform of Pleckstrin homology domain containing O2 OS=Sus scrofa OX=9823 GN=PLEKHO2 PE=1 SV=1 CANONICAL=A0A287AFQ5-1" }, "locus": { "chromosome": "1", "start_pos": 107208837, "end_pos": 107188243, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105195.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105195.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079372.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079372.1" } ] } }, { "isoform_ac": "F1S0B4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFQ5/entry#F1S0B4-1", "sequence": { "sequence": "MTELEGILQGVKEASEKPRGAQTADKAGWIKKSSGGFLGLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRALLKRKHRFILLRSPGNKVSDIKFQAPSGEEKESWIKALNEGINRGKNKAFDEVKVDKSCALEHVTRDRVRGGQRRRPPTRVHLKEVANAASDGLSRLDLDVPDSGPPVFAPSNDVTAVQPRETFQPPMPPTKPSPMPETTSLGDRVETPVGERAPTPVPASSEAHPESREDSETLTGEDSGSEQPPNRVLPDKLKVSWENPSPEEPPNPESVGLVQVPGSETSKAVPKEGGKPPAPPPKILSEKLRASMSGMEASGPAQSPGASDTLAPGPAQVSVNGVDDSPEPVKPSQATDTPGTPPKDSSTSIALPPGDPRPQFHPRCSSLGDLLGEGPRRPRQPGERLYRAQLEVKVASEQTEKLLNKVLGNEPAPVNAETLLSQAVEQLRQATQVLQEIRDLGELSQEAPGLQEKRKELVTLYRRSAP", "length": 504, "header": "tr|F1S0B4-1|A0A287AFQ5_PIG Computationally mapped isoform of Pleckstrin homology domain containing O2 OS=Sus scrofa OX=9823 GN=PLEKHO2 PE=1 SV=3 CANONICAL=A0A287AFQ5-1" }, "locus": { "chromosome": "1", "start_pos": 107217666, "end_pos": 107188243, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": 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"MARGGVGAEEASLRSNALSWLACGLLALLANAWIILSISAKQQKHKPLELLLCFLAGTHILMAAVPLTTFAVVQLRRQASSDYDWNESICKVFVSTYYTLALATCFTVASLSYHRMWMVRWPVNYRLSNAKKQALHAVMGIWMVSFILSTLPSIGWHNNGERYYARGCQFIVSKIGLGFGVCFSLLLLGGIVMGLVCVAITFYQTLWARPRRARQARRAGVGGGAKGGGSGGLGTRPAFEVPAIVVEDARGKRRSSLDGSESAKTSLQVTNLVSAIVFLYDSLTGVPILVVSFFSLKSDSAPPWMVLAVLWCSMAQTLLLPSFIWSCERYRADVRTVWEQCVAIMSEEDGDDDGGCDDYADGRVCKVRFDANGATGPGGRDPAQVKLLPGRHMLFPPLERVHYLQVPLARRLSHDETNIFATPRAPGSFLHKWSSSDDIRVLPAQSRALGGPPEYLGQRQRLEDEEDEEEAEGGGLASLRQFLEGGVLGSGGGPPWGPGFFREEITTFIDETPLPSPTASPGPSPRRPRPLGISPRRLSLGSPESRAIGLPLGLSAGRRCSLTGGEGGARAWGGSWGPGNPIFPQLTL", "length": 588, "header": "tr|A0A287AG79-1|A0A287AG79_PIG Isoform 1 of G protein-coupled receptor 162 OS=Sus scrofa OX=9823 GN=GPR162 PE=4 SV=1 CANONICAL=A0A287AG79-1" }, "isoforms": [ { "isoform_ac": "A0A287AG79-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AG79/entry#A0A287AG79-1", "sequence": { "sequence": "MARGGVGAEEASLRSNALSWLACGLLALLANAWIILSISAKQQKHKPLELLLCFLAGTHILMAAVPLTTFAVVQLRRQASSDYDWNESICKVFVSTYYTLALATCFTVASLSYHRMWMVRWPVNYRLSNAKKQALHAVMGIWMVSFILSTLPSIGWHNNGERYYARGCQFIVSKIGLGFGVCFSLLLLGGIVMGLVCVAITFYQTLWARPRRARQARRAGVGGGAKGGGSGGLGTRPAFEVPAIVVEDARGKRRSSLDGSESAKTSLQVTNLVSAIVFLYDSLTGVPILVVSFFSLKSDSAPPWMVLAVLWCSMAQTLLLPSFIWSCERYRADVRTVWEQCVAIMSEEDGDDDGGCDDYADGRVCKVRFDANGATGPGGRDPAQVKLLPGRHMLFPPLERVHYLQVPLARRLSHDETNIFATPRAPGSFLHKWSSSDDIRVLPAQSRALGGPPEYLGQRQRLEDEEDEEEAEGGGLASLRQFLEGGVLGSGGGPPWGPGFFREEITTFIDETPLPSPTASPGPSPRRPRPLGISPRRLSLGSPESRAIGLPLGLSAGRRCSLTGGEGGARAWGGSWGPGNPIFPQLTL", "length": 588, "header": "tr|A0A287AG79-1|A0A287AG79_PIG Isoform 1 of G protein-coupled receptor 162 OS=Sus scrofa OX=9823 GN=GPR162 PE=4 SV=1 CANONICAL=A0A287AG79-1" }, "locus": { "chromosome": "5", "start_pos": 63889139, "end_pos": 63885926, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047977.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047977.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042847.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042847.1" } ] } }, { "isoform_ac": "F1SLV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AG79/entry#F1SLV0-1", "sequence": { "sequence": "MARGGVGAEEASLRSNALSWLACGLLALLANAWIILSISAKQQKHKPLELLLCFLAGTHILMAAVPLTTFAVVQLRRQASSDYDWNESICKVFVSTYYTLALATCFTVASLSYHRMWMVRWPVNYRLSNAKKQALHAVMGIWMVSFILSTLPSIGWHNNGERYYARGCQFIVSKIGLGFGVCFSLLLLGGIVMGLVCVAITFYQTLWARPRRARQARRAGVGGGAKGGGSGGLGTRPAFEVPAIVVEDARGKRRSSLDGSESAKTSLQVTNLVSAIVFLYDSLTGVPILVRLGSSPPSCSLQYPGPSMIAQPPAPSASHAAPPSSCLSSTQPTAFVVSFFSLKSDSAPPWMVLAVLWCSMAQTLLLPSFIWSCERYRADVRTVWEQCVAIMSEEDGDDDGGCDDYADGRVCKVRFDANGATGPGGRDPAQVKLLPGRHMLFPPLERVHYLQVPLARRLSHDETNIFATPRAPGSFLHKWSSSDDIRVLPAQSRALGGPPEYLGQRQRLEDEEDEEEAEGGGLASLRQFLEGGVLGSGGGPPWGPGFFREEITTFIDETPLPSPTASPGPSPRRPRPLGISPRRLSLGSPESRAIGLPLGLSAGRRCSLTGGEGGARAWGGSWGPGNPIFPQLTL", "length": 634, "header": "tr|F1SLV0-1|A0A287AG79_PIG Computationally mapped isoform of G protein-coupled receptor 162 OS=Sus scrofa OX=9823 GN=GPR162 PE=4 SV=3 CANONICAL=A0A287AG79-1" }, "locus": { "chromosome": "5", "start_pos": 63889139, "end_pos": 63885926, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000741.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000741.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000725.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000725.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 518, "start_aa": "Thr", "end_pos": 518, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr518", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLV0", "url": "https://www.uniprot.org/uniprotkb/F1SLV0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736664", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736664", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C9F2-1", "protein_name": "G protein-coupled receptor 162", "gene_name": "GPR162", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGDSESESTLHNNSLWWLACGMLALLANSWIILSITAKQQKHKPLELLLCFLAGTHILMAAVPLTTYAVVQLRRESSNYDWNESICKVFVSTYYTLALATCFTVASLSYHRMWMVRWPVNYRLSNAKKQALHAVMGIWMVSFILSTLPSIGWHNNGERYYARGCQFIVSKIGLGFGVCFSLLLLGGIVMGLVCVGITFYQTLWAHRRRRQCCHQRPEEASSCSSAHNTFNVPAIVVEDVRGKRRSSLDGSESAKTSLQMTNLISAIVFLYDTLTGVPILVVSFFSLRYDTAPTWMVLAVLWCSMVQTLLLPSFIWSCERYRADLRTIWEQCVAIMSEEDGDDDGVCDDYGDGRICKVRFDANGAAAVKRDSRDIKLLPMHHMLLPQDKVHYLQVPISRRMSHDETNIFSAHRSAPSFLHKWSSSDDIRISTLRKPGGPGFLPPQLHDYQHRQQPPEDELTSLRQFLEGGLVPRGSSSSACFFRDEITTFIDETPQPTPVCSPRHSRLPIAACRDRRLSLGSREEESTNRPRCCSLAGSEAWHLQDEEQAPRERTPEACEAQPLQDPKL", "length": 568 }, "evidence": [ { "id": "A0A287AG79", "url": "https://omabrowser.org/oma/group/A0A287AG79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q16538-1", "protein_name": "Probable G protein-coupled receptor 162", "gene_name": "GPR162", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARGGAGAEEASLRSNALSWLACGLLALLANAWIILSISAKQQKHKPLELLLCFLAGTHILMAAVPLTTFAVVQLRRQASSDYDWNESICKVFVSTYYTLALATCFTVASLSYHRMWMVRWPVNYRLSNAKKQALHAVMGIWMVSFILSTLPSIGWHNNGERYYARGCQFIVSKIGLGFGVCFSLLLLGGIVMGLVCVAITFYQTLWARPRRARQARRVGGGGGTKAGGPGALGTRPAFEVPAIVVEDARGKRRSSLDGSESAKTSLQVTNLVSAIVFLYDSLTGVPILVVSFFSLKSDSAPPWMVLAVLWCSMAQTLLLPSFIWSCERYRADVRTVWEQCVAIMSEEDGDDDGGCDDYAEGRVCKVRFDANGATGPGSRDPAQVKLLPGRHMLFPPLERVHYLQVPLSRRLSHDETNIFSTPREPGSFLHKWSSSDDIRVLPAQSRALGGPPEYLGQRHRLEDEEDEEEAEGGGLASLRQFLESGVLGSGGGPPRGPGFFREEITTFIDETPLPSPTASPGHSPRRPRPLGLSPRRLSLGSPESRAVGLPLGLSAGRRCSLTGGEESARAWGGSWGPGNPIFPQLTL", "length": 588 }, "evidence": [ { "id": "A0A287AG79", "url": "https://omabrowser.org/oma/group/A0A287AG79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3UN16-1", "protein_name": "Probable G protein-coupled receptor 162", "gene_name": "Gpr162", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARGGLGAEEASLRSNALSWLACGLLALLANAWIILSISAKQQKHKPLELLLCFLAGTHILMAAVPLTTFAVVQLRRQASSDYDWNESICKVFVSTYYTLALATCFTVASLSYHRMWMVRWPVNYRLSNAKKQALHAVMGIWMVSFILSTLPSIGWHNNGERYYARGCQFIVSKIGLGFGVCFSLLLLGGIVMGLVCVAITFYQTLWARPRRARQARRAGGSVGTKAGGLGGLGTRPAFEVPAIVVEDTRGKRRSSLDGSESAKTSLQVTNLVSAIVFLYDSLTGVPILVVSFFSLKSDSAPPWMVLAVLWCSMAQTLLLPSFIWSCERYRADVRTVWEQCVAIMSEDDGDDDGTCDDYTDGRVCKIRFDANGATGSGSRDPTQVKLLPGRHMLFPPLERVHYLQVPLSRRLSHDETNIFSTPRAPGSFLHKWSSSDDIRILPAQSRALGGPPEYLGQRHRLEDEEDEEEAEGGGLASLRQFLESGVLGSGGGPPRGPGFFREEITTFIDETPLPSPTASPGPSPRRPRPLGFSPRRLSLGSPDSRAVGLPLGLSAGRRCSLTGSEGSSRAWGRPWGPGNPIFPQLTL", "length": 588 }, "evidence": [ { "id": "A0A287AG79", "url": 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"A0A287AFE5_PIG", "mass": { "chemical_mass": 54836.0, "monoisotopic_mass": 54836.0 }, "refseq": { "ac": "XP_020938697", "name": "solute carrier family 43 member 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938697" }, "gene_names": [ { "name": "SLC43A3", "type": "recommended", "evidence": [ { "id": "A0A287AFE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5" } ] }, { "name": "SLC43A3", "type": "synonym", "evidence": [ { "id": "XP_020938697", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938697" } ] } ], "protein_names": [ { "name": "Solute carrier family 43 member 3", "type": "synonym", "evidence": [ { "id": "A0A287AFE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5/entry#names_and_taxonomy" } ] }, { "name": "solute carrier family 43 member 3", "type": "synonym", "evidence": [ { "id": "XP_020938697", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938697" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AFE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC43A3", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5", "locus": { "chromosome": "2", "start_pos": 13516120, "end_pos": 13490897, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033998", "url": "https://www.ensembl.org/id/ENSSSCG00000033998" } ] } } ], "crossref": [ { "id": "ENSSSCG00000033998", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033998", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110259261", "url": "https://www.ncbi.nlm.nih.gov/gene/110259261", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110259261", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259261", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CNILQQV", "url": "https://omabrowser.org/oma/group/CNILQQV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AFE5", "url": "https://www.orthodb.org/?gene=A0A287AFE5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20765", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20765", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20765:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20765:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020938697", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938697", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AFE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ40-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1Y1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1Y1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1Y1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RG00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RG00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RG00-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RG00-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQGASLPLRMATLLTGLLECIGFAGVLFGWASLVFIFKTERYFESLCEPNATLMGNATGPADCRAQDEQFSLIFTVASFMNNFMTFPTGFIFDRFKTTVTRLLAIFLYTSATLIIAFTSADSAMLLFLAMPMLTVGGILFLITNLQVGNLFGRHRSTIITLYNGAFDSSSAVFLIIKLLYEWGVDLRSSFIFISVCSAWHVGRTFLLMPRGHIPYPLPPNYSYGLCSRDGPREEGKTATESQKLEPQSKASLSPKEEISGPGQPQEPRSFWSCVFSRRYCWHLVWLSVIQLWHYLFIGTFNSLLTILARGDQALVSTYTNAFAITQFFGVLCAPWNGLLMDRLKQKYQEEARRKGSPASASVVALSSAVPSLALTSLLCLGFALCASVPVLPLQYVTFILQVVSRSFLYGGNAAFLTLAFPSEHFGKLFGLVMALSAVVSLLQFPIFTLSKGPLKNDPFYVNVMLVLLTLLTFVHPFLVYRECRRQDRPQEVA", "length": 493, "header": "tr|A0A287AFE5-1|A0A287AFE5_PIG Isoform 1 of Solute carrier family 43 member 3 OS=Sus scrofa OX=9823 GN=SLC43A3 PE=4 SV=1 CANONICAL=A0A287AFE5-1" }, "isoforms": [ { "isoform_ac": "A0A287AFE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5/entry#A0A287AFE5-1", "sequence": { "sequence": "MQGASLPLRMATLLTGLLECIGFAGVLFGWASLVFIFKTERYFESLCEPNATLMGNATGPADCRAQDEQFSLIFTVASFMNNFMTFPTGFIFDRFKTTVTRLLAIFLYTSATLIIAFTSADSAMLLFLAMPMLTVGGILFLITNLQVGNLFGRHRSTIITLYNGAFDSSSAVFLIIKLLYEWGVDLRSSFIFISVCSAWHVGRTFLLMPRGHIPYPLPPNYSYGLCSRDGPREEGKTATESQKLEPQSKASLSPKEEISGPGQPQEPRSFWSCVFSRRYCWHLVWLSVIQLWHYLFIGTFNSLLTILARGDQALVSTYTNAFAITQFFGVLCAPWNGLLMDRLKQKYQEEARRKGSPASASVVALSSAVPSLALTSLLCLGFALCASVPVLPLQYVTFILQVVSRSFLYGGNAAFLTLAFPSEHFGKLFGLVMALSAVVSLLQFPIFTLSKGPLKNDPFYVNVMLVLLTLLTFVHPFLVYRECRRQDRPQEVA", "length": 493, "header": "tr|A0A287AFE5-1|A0A287AFE5_PIG Isoform 1 of Solute carrier family 43 member 3 OS=Sus scrofa OX=9823 GN=SLC43A3 PE=4 SV=1 CANONICAL=A0A287AFE5-1" }, "locus": { "chromosome": "2", "start_pos": 13513575, "end_pos": 13492315, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058946.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058946.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042743.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042743.1" } ] } }, { "isoform_ac": "A0A5G2QZ40-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5/entry#A0A5G2QZ40-1", "sequence": { "sequence": "MQGASLPLRMATLLTGLLECIGFAGVLFGWASLVFIFKTERYFESLCEPNATLMGNATGPADCRAQDEQFSLIFTVASFMNNFMTFPTGFIFDRFKTTVTRLLAIFLYTSATLIIAFTSADSAMLLFLAMPMLTVGGILFLITNLQVGNLFGRHRSTIITLYNGAFDSSSAVFLIIKLLYEWGVDLRSSFIFISVCSAWHVGRTFLLMPRGHIPYPLPPNYSYGLCSRDGPREEGKTATESQKLEPQSKASLSPKEEISGPGQPQEPRSFWSCVFSRRYCWHLVWLSVIQLWHYLFIGTFNSLLTILARGDQALGSPASASVVALSSAVPSLALTSLLCLGFALCASVPVLPLQYVTFILQVVSRSFLYGGNAAFLTLAFPSEHFGKLFGLVMALSAVVSLLQFPIFTLSKGPLKNDPFYVNVMLVLLTLLTFVHPFLVYRECRRQDRPQEVA", "length": 453, "header": "tr|A0A5G2QZ40-1|A0A287AFE5_PIG Computationally mapped isoform of Solute carrier family 43 member 3 OS=Sus scrofa OX=9823 GN=SLC43A3 PE=4 SV=1 CANONICAL=A0A287AFE5-1" }, "locus": { "chromosome": "2", "start_pos": 13513575, "end_pos": 13492315, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089002.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089002.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063505.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063505.1" } ] } }, { "isoform_ac": "A0A5G2R1Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5/entry#A0A5G2R1Y1-1", "sequence": { "sequence": "MQGASLPLRMATLLTGLLECIGFAGVLFGWASLVFIFKTERYFESLCEPNATLMGNATGPAGGRGWRGDPFSLPDCRAQDEQFSLIFTVASFMNNFMTFPTGFIFDRFKTTVTRLLAIFLYTSATLIIAFTSADSAMLLFLAMPMLTVGGILFLITNLQVGNLFGRHRSTIITLYNGAFDSSSAVFLIIKLLYEWGVDLRSSFIFISVCSAWHVGRTFLLMPRGHIPYPLPPNYSYGLCSRDGPREEGKTATESQKLEPQSKASLSPKEEISGPGQPQEPRSFWSCVFSRRYCWHLVWLSVIQLWHYLFIGTFNSLLTILARGDQALVSTYTNAFAITQFFGVLCAPWNGLLMDRLKQKYQEEARRKSASVVALSSAVPSLALTSLLCLGFALCASVPVLPLQYVTFILQVVSRSFLYGGNAAFLTLAFPSEHFGKLFGLVMALSAVVSLLQFPIFTLSKGPLKNDPFYVNVMLVLLTLLTFVHPFLVYRECRRQDRPQEVA", "length": 502, "header": "tr|A0A5G2R1Y1-1|A0A5G2R1Y1_PIG Computationally mapped isoform of Solute carrier family 43 member 3 OS=Sus scrofa OX=9823 GN=SLC43A3 PE=4 SV=1 CANONICAL=A0A287AFE5-1" }, "locus": { "chromosome": "2", "start_pos": 13513575, "end_pos": 13492315, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087378.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087378.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070355.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070355.1" } ] } }, { "isoform_ac": "A0A5G2RG00-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5/entry#A0A5G2RG00-1", "sequence": { "sequence": "MQGASLPLRMATLLTGLLECIGFAGVLFGWASLVFIFKTERYFESLCEPNATLMGNATGPADCRAQDEQFSLIFTVASFMNNFMTFPTGFIFDRFKTTVTRLLAIFLYTSATLIIAFTSADSAMLLFLAMPMLTVGGILFLITNLQVGNLFGRHRSTIITLYNGAFDSSSAVFLIIKLLYEWGVDLRSSFIFISVCSAWHVGRTFLLMPRGHIPYPLPPNYSYGLCSRDGPREEGKTATESQKLEPQSKASLSPKEEISGPGQPQEPRSFWSCVFSRRYCWHLVWLSVIQLWHYLFIGTFNSLLTILARGDQALGIPGGLCAPEEDLSRGVGRRVRQGKGSPASASVVALSSAVPSLALTSLLCLGFALCASVPVLPLQYVTFILQVVSRSFLYGGNAAFLTLAFPSEHFGKLFGLVMALSAVVSLLQFPIFTLSKGPLKNDPFYVNVMLVLLTLLTFVHPFLVYRECRRQDRPQEVA", "length": 478, "header": "tr|A0A5G2RG00-1|A0A287AFE5_PIG Computationally mapped isoform of Solute carrier family 43 member 3 OS=Sus scrofa OX=9823 GN=SLC43A3 PE=4 SV=1 CANONICAL=A0A287AFE5-1" }, "locus": { "chromosome": "2", "start_pos": 13513575, "end_pos": 13492315, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074079.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074079.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073832.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073832.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ40" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110259261", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259261", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LPJ3-1", "protein_name": "Solute carrier family 43, member 3", "gene_name": "Slc43a3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQGSRQTDPRHFLLNPETVGTRGLIEVECLPKEISYTPLPVVSEVQDRICGPTSPQTMASQLPLYLATFLTGLLECIGFAGVLFGWTSLLFVFKAENYFLKPCEQDCVLGGNTTGLPDLKAQDEKFSLIFTLASFMNNFMTFPTGYIFDRFKTAVARLLAIFFYTCATLIIAFTSADTAMLLFLAMPMLAVGGILFLITNLQIGNLFGKHRSTIITFYNGAFDSSSAVFLIIKLLYEQGISLRHSFIFLSVCSAWHVGRTFLLMPRGHIPYPLPPNYSYGLCSRFCTRKEENEAAEHETKELQSRECQSPKEENSGPEQQQQQQQQQQQQQQQQQQHSFRRCVFSHRFILHVVWLSIIQLWHYLFIGTLNSLLTKLAGEDSVKVSAYTNAFAITQFFGVLCAPWNGLLMDCLKQKYQKEAKRTGLSSEAVALCSMVPSLALTSLLSLGFTLCASIPVIELQYATFILQVVSRSFLYGCNAAFLTLAFPSEHFGKLFGLVMALSAIVSLLQFPLFKVSPESKAVYVSMGLAIFLTLVHPFLVYRECRVEKTKPSVDA", "length": 557 }, "evidence": [ { "id": "A0A287AFE5", "url": "https://omabrowser.org/oma/group/A0A287AFE5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A2AVZ9-1", "protein_name": "Equilibrative nucleobase transporter 1", "gene_name": "Slc43a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKGLPLYLATLLTGLLECIGFAGVLFGWTSLLFVFKAENYFSEPCEQDCLLQSNVTGPSDLKAQDEKFSLIFTLASFMNNFMTFPTGYIFDRFKTTVARLIAIFFYTCATIIIAFTSANTAMLLFLAMPMLAVGGILFLITNLQIGNLFGKHRSTIITLYNGAFDSSSAVFLVIKLLYEQGISLRSSFIFMSVCSVWHIARTFLLMPKGHIPYPLPPNYSYGLCSRFGASKKENKAAEHETKELRSKECLPPKEENSGPEQQQQQEQQQQQQQQQEQHEQHSFRRCALSRRFILHVVWLSIIQLWHYLFIGTLNSLLTKLSGGDKVEVSAYTNAFAITQFFGVLCAPWNGLLMDRLKQKYQKAAKRTGSSSEAVALCSMVPSLALTSLLSLGFALCASIPVMQLQYATFILQVVSRSFLYGCNAAFLTLAFPSEHFGKLFGLVMALSAIVSLLQFPLFKVSPESNAVYVSMGLAIFLTLVHPFLVYRECRAEKTKSSVDA", "length": 502 }, "evidence": [ { "id": "A0A287AFE5", "url": "https://omabrowser.org/oma/group/A0A287AFE5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q04991-1", "protein_name": "Protein FMP42", "gene_name": "FMP42", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTSTRTLRYAQVACACIWCLFSAGIIFGFAALKPILISEGVYHELCDPKDGDRLLCTAQDLKLNFIFALSATVTNIMALPVGKILDMYGPRVCGIIGSCLLFLASGNFISAKHLVSLWDPYLVGYTLLAVAGPFVFISCFQLANSFPQRSGTVLALLTGSFDSSSALFLLYRLLYQNWFPTLNVSRFFTLYLIVPVFILACQLTIMPHSSYKTVNHIAKIAVEGLDENGRLIEGDTGSGIIPDEQERQSLIAIEREEDSIPSRPQRRKSVLETYVEDKLQKKSGGIFGVLHGKSAYEQIKSPWFYLMLLFALVAMLRINYFIATVRTQEEYLLNDPDLALKLNSIFDMLLPLGGAVSIPFIGLLLDHTDTLSTLTILFTTSTAIGVFGLIPNSFTWNLIGIVLLVVYRPFYYTVVSDYSSKVFGFDTFGTVYGLLSCICGIFNMSQNLLDKWTHTTFNMNPFPINLTLVILTVVFSLTLTFYIRSQILPKPVNERGLSSNYQTI", "length": 504 }, "evidence": [ { "id": "A0A287AFE5", "url": "https://omabrowser.org/oma/group/A0A287AFE5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54H08-1", "protein_name": "Major facilitator superfamily (MFS) profile domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKWNGIIKFNRFKSILKKKWKKKRYFLKKKKKKKKIFFFIFQFFLFFLFFFIYFLKLLIRTQVINMKDYTKVSNYDIDQDNYNENGSGGYKKIKNGASTSSTNNQQRILIEKEANDASLSIYTNKSRYITMILASFQMLLVSGMVFGWPALEYELEKQNVFKYLCKDGEELPCPSQASRLNLVYTIGAFTSTGSAFLTGAIYDRYGPRKTNFLSFLLLVLGCILWYCSYLYEANLYILSFALIGTGGPACQVSLLHISNLFPSTSSGITSLFSGMFVGSSIIFKVFSVIANKYSIEVSYIFLGYMVLLVPLFIPTWILLRNKPFIPINDFKILNNIPISDNNNDNGNNDNNNNNGNGNSEVSSIQNNQINPESLNLFSNVREQPVFTQIFSKEFFLLCFYMSFNSLHLVYYMGVVNDMFEDKQIYVDIFNYMWSGGVFFIPLVGWMMVKTSLHINCFLVNVFALVFGVLSSINVDQVQLGTFIFASFTNVSLWSFYFIYLSDVFGNNNYGKLLGLSSVVVAVVGLLEVCINILL", "length": 534 }, "evidence": [ { "id": "A0A287AFE5", "url": "https://omabrowser.org/oma/group/A0A287AFE5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NBI5-1", "protein_name": "Equilibrative nucleobase transporter 1", "gene_name": "SLC43A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGQGLPLHVATLLTGLLECLGFAGVLFGWPSLVFVFKNEDYFKDLCGPDAGPIGNATGQADCKAQDERFSLIFTLGSFMNNFMTFPTGYIFDRFKTTVARLIAIFFYTTATLIIAFTSAGSAVLLFLAMPMLTIGGILFLITNLQIGNLFGQHRSTIITLYNGAFDSSSAVFLIIKLLYEKGISLRASFIFISVCSTWHVARTFLLMPRGHIPYPLPPNYSYGLCPGNGTTKEEKETAEHENRELQSKEFLSAKEETPGAGQKQELRSFWSYAFSRRFAWHLVWLSVIQLWHYLFIGTLNSLLTNMAGGDMARVSTYTNAFAFTQFGVLCAPWNGLLMDRLKQKYQKEARKTGSSTLAVALCSTVPSLALTSLLCLGFALCASVPILPLQYLTFILQVISRSFLYGSNAAFLTLAFPSEHFGKLFGLVMALSAVVSLLQFPIFTLIKGSLQNDPFYVNVMFMLAILLTFFHPFLVYRECRTWKESPSAIA", "length": 491 }, "evidence": [ { "id": "A0A287AFE5", "url": "https://omabrowser.org/oma/group/A0A287AFE5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5" } ], "pmid": "" }, { "name": "fatty acid transmembrane transporter activity", "id": "GO:0015245", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015245", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5" } ], "pmid": "" }, { "name": "xenobiotic transmembrane transporter activity", "id": "GO:0042910", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042910", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5" } ], "pmid": "" }, { "name": "adenine transmembrane transporter activity", "id": "GO:0015207", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015207", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5" } ], "pmid": "" }, { "name": "guanine transmembrane transporter activity", "id": "GO:0015208", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015208", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "hypoxanthine transport", "id": "GO:0035344", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035344", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFE5", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 220, "end_pos": 222, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 220, "end_pos": 222 }, { "start_pos": 50, "end_pos": 52 }, { "start_pos": 56, "end_pos": 58 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287A841-1", "uniprot_ac": "A0A287A841", "uniprot_id": "A0A287A841_PIG", "mass": { "chemical_mass": 62494.0, "monoisotopic_mass": 62494.0 }, "refseq": {}, "gene_names": [ { "name": "SPATS2L", "type": "recommended", "evidence": [ { "id": "A0A287A841", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A841" } ] } ], "protein_names": [ { "name": "Spermatosis associated serine rich 2 like", "type": "synonym", "evidence": [ { "id": "A0A287A841", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287A841/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287A841", "url": "https://www.uniprot.org/uniprotkb/A0A287A841" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPATS2L", "url": "https://www.uniprot.org/uniprotkb/A0A287A841", "locus": { "chromosome": "15", "start_pos": 104060524, "end_pos": 103879356, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016090", "url": "https://www.ensembl.org/id/ENSSSCG00000016090" } ] } } ], "crossref": [ { "id": "A0A287A841", "url": "https://alphafold.ebi.ac.uk/entry/A0A287A841", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016090", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016090", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100415809", "url": "https://www.ncbi.nlm.nih.gov/gene/100415809", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009816", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009816", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15623", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15623", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15623:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15623:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07139", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07139", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZTZ9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZTZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5B1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A841", "url": "https://www.uniprot.org/uniprotkb/A0A287A841", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A841-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A841-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8L3", "url": "https://www.uniprot.org/uniprotkb/A0A287A8L3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8L3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8L3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANT4", "url": "https://www.uniprot.org/uniprotkb/A0A287ANT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANT4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPA2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPA2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8M8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8M8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8M8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8M8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJZ8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI69", "url": "https://www.uniprot.org/uniprotkb/F1SI69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI69-1", "url": "https://www.uniprot.org/uniprotkb/F1SI69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VAYSTRSKMAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNKEAKDKAERPDAGPLQPPAAPQIQNGHVNGCEKDSSSTDSASEKPAPAPREKKISILEEPSKALRGVTEGNRPLQQKLSLDGSPKSIHGTPERSDGLQWSAEQPCHPSKPKAKTSPVKSNAPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQIMLCGEITHPKNNYSSRTPCSSLLPLLNAHATTSGKQSNFTRKSSSHTKPSEGKAANPKMASNLPSTADSSHQTAPANKQNGSASQRRRFNPQYHNNRLNGSAKPQGSGNDNDPMGKGNNRHEHRRQPHNGFRPKNKGGAKNQEASLGTKTPEAPAHPEKPRRRQHAADNSEARPFRGNVSRVSQCNLCPTRIEVSTEAAVLSVPAVTLVA", "length": 567, "header": "tr|A0A287A841-1|A0A287A841_PIG Isoform 1 of Spermatosis associated serine rich 2 like OS=Sus scrofa OX=9823 GN=SPATS2L PE=1 SV=1 CANONICAL=A0A287A841-1" }, "isoforms": [ { "isoform_ac": "A0A286ZTZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A841/entry#A0A286ZTZ9-1", "sequence": { "sequence": "AYSTRSKMAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNKEAKDKAERPDAGPLQPPAAPQIQNGHVNGCEKDSSSTDSASEKPAPAPREKKISILEEPSKALRGVTEGNRPLQQKLSLDGSPKSIHGTPERSDGLQWSAEQPCHPSKPKAKTSPVKSNAPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQIMLCGEITHPKNNYSSRTPCSSLLPLLNAHATTSGKQSNFTRKSSSHTKPSEGKAANPKMASNLPSTADSSHQTAPANKQNGSASQRRRFNPQYHNNRLNGSAKPQGSGNDNDPMGKGNNRHEHRRQPHNGFRPKNKGGAKNQEASLGTKTPEAPAHPEKPRRRQHAADNSEARPFRGNVSRVSQCNLCPTRIEVSTEAAVLSVPAVTLVA", "length": 566, "header": "tr|A0A286ZTZ9-1|A0A287A841_PIG Computationally mapped isoform of Spermatosis associated serine rich 2 like OS=Sus scrofa OX=9823 GN=SPATS2L PE=1 SV=2 CANONICAL=A0A287A841-1" }, "locus": { "chromosome": "15", "start_pos": 104060006, "end_pos": 103964232, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046486.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046486.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035103.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035103.2" } ] } }, { "isoform_ac": "A0A287A5B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A841/entry#A0A287A5B1-1", "sequence": { "sequence": "VSSLKTHLIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNKEAKDKAERPDAGPLQPPAAPQIQNGHVNGCEKDSSSTDSASEKPAPAPREKKISILEEPSKALRGVTEGNRPLQQKLSLDGSPKSIHGTPERSDGLQWSAEQPCHPSKPKAKTSPVKSNAPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQIMLCGEITHPKNNYSSRTPCSSLLPLLNAHATTSGKQSNFTRKSSSHTKPSEGKAANPKMASNLPSTADSSHQTAPANKQNGSASQRRRFNPQYHNNRLNGSAKPQGSGNDNDPMGKGNNRHEHRRQPHNGFRPKNKGGAKNQEASLGTKTPEAPAHPEKPRRRQHAADNSEARPFRGNVSRVSQCNLCPTRIEVSTEAAVLSVPAVTLVA", "length": 554, "header": "tr|A0A287A5B1-1|A0A287A5B1_PIG Computationally mapped isoform of Spermatosis associated serine rich 2 like OS=Sus scrofa OX=9823 GN=SPATS2L PE=1 SV=1 CANONICAL=A0A287A841-1" }, "locus": { "chromosome": "15", "start_pos": 104060006, "end_pos": 103994336, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056854.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056854.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039155.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039155.2" } ] } }, { "isoform_ac": "A0A287A841-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A841/entry#A0A287A841-1", "sequence": { "sequence": "VAYSTRSKMAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNKEAKDKAERPDAGPLQPPAAPQIQNGHVNGCEKDSSSTDSASEKPAPAPREKKISILEEPSKALRGVTEGNRPLQQKLSLDGSPKSIHGTPERSDGLQWSAEQPCHPSKPKAKTSPVKSNAPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQIMLCGEITHPKNNYSSRTPCSSLLPLLNAHATTSGKQSNFTRKSSSHTKPSEGKAANPKMASNLPSTADSSHQTAPANKQNGSASQRRRFNPQYHNNRLNGSAKPQGSGNDNDPMGKGNNRHEHRRQPHNGFRPKNKGGAKNQEASLGTKTPEAPAHPEKPRRRQHAADNSEARPFRGNVSRVSQCNLCPTRIEVSTEAAVLSVPAVTLVA", "length": 567, "header": "tr|A0A287A841-1|A0A287A841_PIG Isoform 1 of Spermatosis associated serine rich 2 like OS=Sus scrofa OX=9823 GN=SPATS2L PE=1 SV=1 CANONICAL=A0A287A841-1" }, "locus": { "chromosome": "15", "start_pos": 104060006, "end_pos": 103923842, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047765.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047765.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039941.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039941.2" } ] } }, { "isoform_ac": "A0A287A8L3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A841/entry#A0A287A8L3-1", "sequence": { "sequence": "MFHRDQAYSTRSKMAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNKEAKDKAERPDAGPLQPPAAPQIQNGHVNGCEKDSSSTDSASEKPAPAPREKKISILEEPSKALRGVTGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQIMLCGEITHPKNNYSSRTPCSSLLPLLNAHATTSGKQSNFTRKSSSHTKPSEGKAANPKMASNLPSTADSSHQTAPANKQNGSASQRRRFNPQYHNNRLNGSAKPQGSGNDNDPMGKGNNRHEHRRQPHNGFRPKNKGGAKNQEASLGTKTPEAPAHPEKPRRRQHAADNSEARPFRGNVSRVSQCNLCPTRIEVSTEAAVLSVPAVTLVA", "length": 503, "header": "tr|A0A287A8L3-1|A0A287A8L3_PIG Computationally mapped isoform of Spermatosis associated serine rich 2 like OS=Sus scrofa OX=9823 GN=SPATS2L PE=1 SV=2 CANONICAL=A0A287A841-1" }, "locus": { "chromosome": "15", "start_pos": 104060006, "end_pos": 103956430, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061754.2", "url": "https://www.ensembl.org/id/ENSSSCT00000061754.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040323.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040323.2" } ] } }, { "isoform_ac": "A0A287ANT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A841/entry#A0A287ANT4-1", "sequence": { "sequence": "MAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNKEAKDKAERPDAGPLQPPAAPQIQNGHVNGCEKDSSSTDSASEKPAPAPREKKISILEEPSKALRGVTGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQIMLCGEITHPKNNYSSRTPCSSLLPLLNAHATTSGKQSNFTRKSSSHTKPSEGKAANPKMASNLPSTADSSHQTAPANKQNGSASQRRRFNPQYHNNRLNGSAKPQGSGNDNDPMGKGNNRHEHRRQPHNGFRPKNKGGAKNQEASLGTKTPEAPAHPEKPRRRQHAADNSEARPFRGNVSRVSQCNLCPTRIEVSTEAAVLSVPAVTLVA", "length": 490, "header": "tr|A0A287ANT4-1|A0A287ANT4_PIG Computationally mapped isoform of Spermatosis associated serine rich 2 like OS=Sus scrofa OX=9823 GN=SPATS2L PE=1 SV=3 CANONICAL=A0A287A841-1" }, "locus": { "chromosome": "15", "start_pos": 104060006, "end_pos": 103964253, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049288.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049288.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045728.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045728.3" } ] } }, { "isoform_ac": "A0A5G2QPA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A841/entry#A0A5G2QPA2-1", "sequence": { "sequence": "MSSNCLRPANLTFLQEPILQLDCETISQTHPAKTQWTPSKYLLIDFCVLCRAYSTRSKMAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNKEAKDKAERPDAGPLQPPAAPQIQNGHVNGCEKDSSSTDSASEKPAPAPREKKISILEEPSKALRGVTEGNRPLQQKLSLDGSPKSIHGTPERSDGLQWSAEQPCHPSKPKAKTSPVKSNAPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQIMLCGEITHPKNNYSSRTPCSSLLPLLNAHATTSGKQSNFTRKSSSHTKPSEGKAANPKMASNLPSTADSSHQTAPANKQNGSASQRRRFNPQYHNNRLNGSAKPQGSGNDNDPMGKGNNRHEHRRQPHNGFRPKNKGGAKNQEASLGTKTPEAPAHPEKPRRRQHAADNSEARPFRGNVSRVSQCNLCPTRIEVSTEAAVLSVPAVTLVA", "length": 617, "header": "tr|A0A5G2QPA2-1|A0A5G2QPA2_PIG Computationally mapped isoform of Spermatosis associated serine rich 2 like OS=Sus scrofa OX=9823 GN=SPATS2L PE=1 SV=1 CANONICAL=A0A287A841-1" }, "locus": { "chromosome": "15", "start_pos": 104060006, "end_pos": 103947637, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082431.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082431.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065896.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065896.1" } ] } }, { "isoform_ac": "A0A8W4F8M8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A841/entry#A0A8W4F8M8-1", "sequence": { "sequence": "IFHVSAMAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNKEAKDKAERPDAGPLQPPAAPQIQNGHVNGCEKDSSSTDSASEKPAPAPREKKISILEEPSKALRGVTGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQIMLCGEITHPKNNYSSRTPCSSLLPLLNAHATTSGKQSNFTRKSSSHTKPSEGKAANPKMASNLPSTADSSHQTAPANKQNGSASQRRRFNPQYHNNRLNGSAKPQGSGNDNDPMGKGNNRHEHRRQPHNGFRPKNKGGAKNQEASLGTKTPEAPAHPEKPRRRQHAADNSEARPFRGNVSRVSQCNLCPTRIEVSTEAAVLSVPAVTLVA", "length": 496, "header": "tr|A0A8W4F8M8-1|A0A287A841_PIG Computationally mapped isoform of Spermatosis associated serine rich 2 like OS=Sus scrofa OX=9823 GN=SPATS2L PE=1 SV=1 CANONICAL=A0A287A841-1" }, "locus": { "chromosome": "15", "start_pos": 104060006, "end_pos": 103963985, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097962.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097962.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074675.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074675.1" } ] } }, { "isoform_ac": "A0A8W4FJZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A841/entry#A0A8W4FJZ8-1", "sequence": { "sequence": "RTYLRQVAYSTRSKMAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNKEAKDKAERPDAGPLQPPAAPQIQNGHVNGCEKDSSSTDSASEKPAPAPREKKISILEEPSKALRGVTGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQIMLCGEITHPKNNYSSRTPCSSLLPLLNAHATTSGKQSNFTRKSSSHTKPSEGKAANPKMASNLPSTADSSHQTAPANKQNGSASQRRRFNPQYHNNRLNGSAKPQGSGNDNDPMGKGNNRHEHRRQPHNGFRPKNKGGAKNQEASLGTKTPEAPAHPEKPRRRQHAADNSEARPFRGNVSRVSQCNLCPTRIEVSTEAAVLSVPAVTLVA", "length": 504, "header": "tr|A0A8W4FJZ8-1|A0A287A841_PIG Computationally mapped isoform of Spermatosis associated serine rich 2 like OS=Sus scrofa OX=9823 GN=SPATS2L PE=1 SV=1 CANONICAL=A0A287A841-1" }, "locus": { "chromosome": "15", "start_pos": 104060006, "end_pos": 103964052, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101649.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101649.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079786.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079786.1" } ] } }, { "isoform_ac": "F1SI69-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A841/entry#F1SI69-1", "sequence": { "sequence": "MQFLRRAYSTRSKMAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNKEAKDKAERPDAGPLQPPAAPQIQNGHVNGCEKDSSSTDSASEKPAPAPREKKISILEEPSKALRGVTGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKEEAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQIMLCGEITHPKNNYSSRTPCSSLLPLLNAHATTSGKQSNFTRKSSSHTKPSEGKAANPKMASNLPSTADSSHQTAPANKQNGSASQRRRFNPQYHNNRLNGSAKPQGSGNDNDPMGKGNNRHEHRRQPHNGFRPKNKGGAKNQEASLGTKTPEAPAHPEKPRRRQHAADNSEARPFRGNVSRVSQCNLCPTRIEVSTEAAVLSVPAVTLVA", "length": 503, "header": "tr|F1SI69-1|A0A287A841_PIG Computationally mapped isoform of Spermatosis associated serine rich 2 like OS=Sus scrofa OX=9823 GN=SPATS2L PE=1 SV=4 CANONICAL=A0A287A841-1" }, "locus": { "chromosome": "15", "start_pos": 104060006, "end_pos": 103952197, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017518.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017518.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017046.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017046.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SI69", "url": "https://www.uniprot.org/uniprotkb/F1SI69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A287A841", "url": "https://www.uniprot.org/uniprotkb/A0A287A841" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287A841", "url": "https://www.uniprot.org/uniprotkb/A0A287A841" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287A841", "url": "https://www.uniprot.org/uniprotkb/A0A287A841" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A287A841", "url": "https://www.uniprot.org/uniprotkb/A0A287A841" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" }, { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 395, "end_pos": 397, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" }, { "start_pos": 456, "end_pos": 458, "annotation": "n_glycosylation_sequon" }, { "start_pos": 535, "end_pos": 537, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287A841-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 567, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287A841-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287A841" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 31, "end_pos": 33 }, { "start_pos": 369, "end_pos": 371 }, { "start_pos": 395, "end_pos": 397 }, { "start_pos": 437, "end_pos": 439 }, { "start_pos": 456, "end_pos": 458 }, { "start_pos": 535, "end_pos": 537 }, { "start_pos": 68, "end_pos": 70 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AIU6-1", "uniprot_ac": "A0A287AIU6", "uniprot_id": "A0A287AIU6_PIG", "mass": { "chemical_mass": 20591.0, "monoisotopic_mass": 20591.0 }, "refseq": {}, "gene_names": [ { "name": "AK4", "type": "recommended", "evidence": [ { "id": "A0A287AIU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ] }, { "name": "AK3L1", "type": "synonym", "evidence": [ { "id": "A0A287AIU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ] } ], "protein_names": [ { "name": "Adenylate kinase 4", "type": "synonym", "evidence": [ { "id": "A0A287AIU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Broad-specificity mitochondrial nucleoside phosphate kinase involved in cellular nucleotide homeostasis by catalyzing nucleoside-phosphate interconversions. Similar to other adenylate kinases, preferentially catalyzes the phosphorylation of the nucleoside monophosphate AMP with ATP as phosphate donor to produce ADP. Phosphorylates only AMP when using GTP as phosphate donor. In vitro, can also catalyze the phosphorylation of CMP, dAMP and dCMP and use GTP as an alternate phosphate donor. Moreover, exhibits a diphosphate kinase activity, producing ATP, CTP, GTP, UTP, TTP, dATP, dCTP and dGTP from the corresponding diphosphate substrates with either ATP or GTP as phosphate donors. Plays a role in controlling cellular ATP levels by regulating phosphorylation and activation of the energy sensor protein kinase AMPK. Plays a protective role in the cellular response to oxidative stress.", "evidence": [ { "database": "UniProtKB", "id": "B1NI70", "url": "https://www.uniprot.org/uniprotkb/B1NI70#function" }, { "database": "UniProtKB", "id": "ARBA00045931", "url": "https://www.uniprot.org/uniprotkb/ARBA00045931#function" } ] }, { "annotation": "Involved in maintaining the homeostasis of cellular nucleotides by catalyzing the interconversion of nucleoside phosphates. Efficiently phosphorylates AMP and dAMP using ATP as phosphate donor, but phosphorylates only AMP when using GTP as phosphate donor. Also displays broad nucleoside diphosphate kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "B1NI70", "url": "https://www.uniprot.org/uniprotkb/B1NI70#function" }, { "database": "HAMAP", "id": "MF_03170", "url": "https://hamap.expasy.org/signature/MF_03170" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AK4", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6", "locus": {} } ], "crossref": [ { "id": "A0A287AIU6", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AIU6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040337", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040337", "database": "Bgee", 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028586", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028586", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033690", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033690", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036193", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036193", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IKVENTM", "url": "https://omabrowser.org/oma/group/IKVENTM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "B1NI70", "url": "https://www.orthodb.org/?gene=B1NI70", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23359", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23359", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00406", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00406", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05191", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05191", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-499943", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-499943", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "11600", "url": "https://www.rhea-db.org/rhea/11600", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "12973", "url": "https://www.rhea-db.org/rhea/12973", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "13749", "url": "https://www.rhea-db.org/rhea/13749", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "18113", "url": "https://www.rhea-db.org/rhea/18113", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "23100", "url": "https://www.rhea-db.org/rhea/23100", 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"database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "29863", "url": "https://www.rhea-db.org/rhea/29863", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "44640", "url": "https://www.rhea-db.org/rhea/44640", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "79855", "url": "https://www.rhea-db.org/rhea/79855", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "79859", "url": "https://www.rhea-db.org/rhea/79859", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "79863", "url": "https://www.rhea-db.org/rhea/79863", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "79867", "url": "https://www.rhea-db.org/rhea/79867", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "79871", "url": "https://www.rhea-db.org/rhea/79871", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "79875", "url": "https://www.rhea-db.org/rhea/79875", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B1NI70", "url": "https://www.uniprot.org/uniprotkb/B1NI70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B1NI70-1", "url": "https://www.uniprot.org/uniprotkb/B1NI70-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKANTGFPRTLVQAEALDKICDLDLVITLNIPFETLKDRLSRRWIHPSSGRVYNLDFNPPHVHGIDDITGEPLIQQEDDKPEAVAARLRQYKDVAKPVIELYKGRGVLHQFSGTETNKIWPYVYTLFSNKITPIQSKEAY", "length": 183, "header": "tr|A0A287AIU6-1|A0A287AIU6_PIG Isoform 1 of Adenylate kinase 4 OS=Sus scrofa OX=9823 GN=AK4 PE=1 SV=1 CANONICAL=A0A287AIU6-1" }, "isoforms": [ { "isoform_ac": "A0A287AIU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6/entry#A0A287AIU6-1", "sequence": { "sequence": "MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKANTGFPRTLVQAEALDKICDLDLVITLNIPFETLKDRLSRRWIHPSSGRVYNLDFNPPHVHGIDDITGEPLIQQEDDKPEAVAARLRQYKDVAKPVIELYKGRGVLHQFSGTETNKIWPYVYTLFSNKITPIQSKEAY", "length": 183, "header": "tr|A0A287AIU6-1|A0A287AIU6_PIG Isoform 1 of Adenylate kinase 4 OS=Sus scrofa OX=9823 GN=AK4 PE=1 SV=1 CANONICAL=A0A287AIU6-1" }, "locus": { "chromosome": "6", "start_pos": 147257025, "end_pos": 147182947, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103010.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103010.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079387.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079387.1" } ] } }, { "isoform_ac": "B1NI70-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6/entry#B1NI70-1", "sequence": { "sequence": "MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKANTEVGDMAKQYIEKGLLVPDHLITRLMLSELENRRGQHWLLDGFPRTLVQAEALDKICDLDLVITLNIPFETLKDRLSRRWIHPSSGRVYNLDFNPPHVHGIDDITGEPLIQQEDDKPEAVAARLRQYKDVAKPVIELYKGRGVLHQFSGTETNKIWPYVYTLFSNKITPIQSKEAY", "length": 223, "header": "tr|B1NI70-1|A0A287AIU6_PIG Computationally mapped isoform of Adenylate kinase 4 OS=Sus scrofa OX=9823 GN=AK4 PE=1 SV=1 CANONICAL=A0A287AIU6-1" }, "locus": { "chromosome": "6", "start_pos": 147257025, "end_pos": 147182947, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042416.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042416.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035829.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035829.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "B1NI70", "url": "https://www.uniprot.org/uniprotkb/B1NI70" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-499943", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-499943", "resource": "Reactome", "description": "Interconversion of nucleotide di- and triphosphates" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZQU1-1", "protein_name": "Adenylate kinase 4, mitochondrial", "gene_name": "AK4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASKVLRAVVLGPPGSGKGTVCERIARSFGLQHLSSGQFLRESLRGGGEVGVLAKQYLERGLLVPDHVITRVMMTELEKRRAEHWLLDGFPRTLGQAEALDRICELDLVISLHIPFETLKDRLSARWIHPASGRVYNMEFNPPHVHGIDDVTGEPLVQREDDKPEAVTARLRKYKDAAKPVIELYKSRGILHSFSGTETNKIWPYVYALLSNKIPPLRSEEEH", "length": 223 }, "evidence": [ { "id": "A0A287AIU6", "url": "https://omabrowser.org/oma/group/A0A287AIU6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P26364-1", "protein_name": "GTP:AMP phosphotransferase, mitochondrial", "gene_name": "ADK2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MKADAKQITHLLKPLRLLLLGAPGSGKGTQTSRLLKQIPQLSSISSGDILRQEIKSESTLGREATTYIAQGKLLPDDLITRLITFRLSALGWLKPSAMWLLDGFPRTTAQASALDELLKQHDASLNLVVELDVPESTILERIENRYVHVPSGRVYNLQYNPPKVPGLDDITGEPLTKRLDDTAEVFKKRLEEYKKTNEPLKDYYKKSGIFGTVSGETSDIIFRNY", "length": 225 }, "evidence": [ { "id": "A0A287AIU6", "url": "https://omabrowser.org/oma/group/A0A287AIU6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P27144-1", "protein_name": "Adenylate kinase 4, mitochondrial", "gene_name": "AK4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETNKIWPYVYTLFSNKITPIQSKEAY", "length": 223 }, "evidence": [ { "id": "A0A287AIU6", "url": "https://omabrowser.org/oma/group/A0A287AIU6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0VCP1-1", "protein_name": "Adenylate kinase 4, mitochondrial", "gene_name": "AK4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKANTEVGDMAKQYIEKGLLVPDHVITRLMLLELENRRGEHWLLDGFPRTLVQAEALDRLCDLDLVITLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGMDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETNKIWPYVYTLFSNKITPVQSKEAY", "length": 223 }, "evidence": [ { "id": "A0A287AIU6", "url": "https://omabrowser.org/oma/group/A0A287AIU6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9WUR9-1", "protein_name": "Adenylate kinase 4, mitochondrial", "gene_name": "Ak4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKLLRAVILGPPGSGKGTVCERIAQNFGLQHLSSGHLLRENLKTGTEVGDVAKQYLEKGLLVPDHVITRLMMSELETRSAQHWLLDGFPRTLVQAEALDGICDVDLVISLNIPFETLKDRLSRRWIHPSSGRVYNLDFNPPQVQGIDDITGEPLVQQEDDKPEAVAARLRRYKDAAKPVIELYKSRGVLHQFSGTETNRIWPYVYTLFSNKITPIQSKEAY", "length": 223 }, "evidence": [ { "id": "A0A287AIU6", "url": "https://omabrowser.org/oma/group/A0A287AIU6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WUS0-1", "protein_name": "Adenylate kinase 4, mitochondrial", "gene_name": "Ak4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKLLRAVILGPPGSGKGTVCERIAQNFGLQHLSSGHLLRENLKTNTEVGDVAKQYLEKGLLVPDHVITRLMMSELETRSAQHWLLDGFPRTLVQAEALDRICDVDLVISLNIPFETLKDRLSRRWIHPSSGRVYNLDFNPPQVLGVDDITGEPLVQQEDDKPEALAARLRRYKDAAKPVIELYKSRGVLHQFSGTETNRIWPYVYTLFSNKITPIQSKEAY", "length": 223 }, "evidence": [ { "id": "A0A287AIU6", "url": "https://omabrowser.org/oma/group/A0A287AIU6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "AMP kinase activity", "id": "GO:0004017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004017", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ], "pmid": "" }, { "name": "nucleoside triphosphate adenylate kinase activity", "id": "GO:0046899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046899", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ], "pmid": "" }, { "name": "nucleoside diphosphate kinase activity", "id": "GO:0004550", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004550", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "ADP biosynthetic process", "id": "GO:0006172", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006172", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ], "pmid": "" }, { "name": "AMP metabolic process", "id": "GO:0046033", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046033", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ], "pmid": "" }, { "name": "ATP metabolic process", "id": "GO:0046034", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046034", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ], "pmid": "" }, { "name": "GTP metabolic process", "id": "GO:0046039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046039", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ], "pmid": "" }, { "name": "nucleoside triphosphate biosynthetic process", "id": "GO:0009142", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009142", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "11600", "name": "", "equation": "CMP + ATP = CDP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "11600", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/11600" } ] }, { "id": "12973", "name": "", "equation": "AMP + ATP = 2 ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "12973", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/12973" } ] }, { "id": "13749", "name": "", "equation": "a ribonucleoside 5'-triphosphate + AMP = a ribonucleoside 5'-diphosphate + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13749", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13749" } ] }, { "id": "18113", "name": "", "equation": "a ribonucleoside 5'-diphosphate + ATP = a ribonucleoside 5'-triphosphate + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "18113", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/18113" } ] }, { "id": "23100", "name": "", "equation": "dAMP + ATP = dADP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "23100", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/23100" } ] }, { "id": "24036", "name": "", "equation": "a ribonucleoside 5'-phosphate + ATP = a ribonucleoside 5'-diphosphate + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "24036", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/24036" } ] }, { "id": "25094", "name": "", "equation": "dCMP + ATP = dCDP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "25094", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/25094" } ] }, { "id": "25098", "name": "", "equation": "UDP + ATP = UTP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "25098", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/25098" } ] }, { "id": "25237", "name": "", "equation": "CDP + ATP = CTP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "25237", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/25237" } ] }, { "id": "27678", "name": "", "equation": "dCDP + ATP = dCTP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "27678", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/27678" } ] }, { "id": "27682", "name": "", "equation": "dTDP + ATP = dTTP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "27682", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/27682" } ] }, { "id": "27686", "name": "", "equation": "GDP + ATP = GTP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "27686", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/27686" } ] }, { "id": "27690", "name": "", "equation": "dGDP + ATP = dGTP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "27690", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/27690" } ] }, { "id": "29863", "name": "", "equation": "GTP + AMP = GDP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29863", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29863" } ] }, { "id": "44640", "name": "", "equation": "a 2'-deoxyribonucleoside 5'-diphosphate + ATP = a 2'-deoxyribonucleoside 5'-triphosphate + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "44640", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/44640" } ] }, { "id": "79855", "name": "", "equation": "GTP + CMP = CDP + GDP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "79855", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/79855" } ] }, { "id": "79859", "name": "", "equation": "CDP + GTP = CTP + GDP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "79859", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/79859" } ] }, { "id": "79863", "name": "", "equation": "GTP + UDP = UTP + GDP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "79863", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/79863" } ] }, { "id": "79867", "name": "", "equation": "dTDP + GTP = dTTP + GDP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "79867", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/79867" } ] }, { "id": "79871", "name": "", "equation": "dADP + GTP = dATP + GDP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "79871", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/79871" } ] }, { "id": "79875", "name": "", "equation": "dCDP + GTP = dCTP + GDP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "79875", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/79875" } ] }, { "id": "R-SSC-6788798", "name": "AK4 phosphorylates (d)NMPs to (d)NDPs", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6788798", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6788798" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AIU6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 183, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AIU6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AIU6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AIU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU6" }, { "id": "PF05191", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05191" } ], 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"https://www.uniprot.org/uniprotkb/A0A287AN79/entry#A0A287AN79-1", "sequence": { "sequence": "MAESHLQSPLITASQFFEIWLHFDADGSGYLEGKELQNLIQELQQARKKAGLLAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGVKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQDLDINNIPTYKKSIMALSDGGKLYRTDLALILSAGDN", "length": 236, "header": "tr|A0A287AN79-1|A0A287AN79_PIG Isoform 1 of Calbindin OS=Sus scrofa OX=9823 GN=CALB1 PE=1 SV=1 CANONICAL=A0A287AN79-1" }, "locus": { "chromosome": "4", "start_pos": 46723468, "end_pos": 46701282, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063108.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063108.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045457.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045457.1" } ] } }, { "isoform_ac": "A0A5G2R0J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AN79/entry#A0A5G2R0J0-1", "sequence": { "sequence": "MAESHLQSPLITASQFFEIWLHFDADGSGYLEGKELQNLIQELQQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGVKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQDLDINNIPTYKKSIMALSDGGKLYRTDLALILSAGDN", "length": 242, "header": "tr|A0A5G2R0J0-1|A0A287AN79_PIG Computationally mapped isoform of Calbindin OS=Sus scrofa OX=9823 GN=CALB1 PE=1 SV=1 CANONICAL=A0A287AN79-1" }, "locus": { "chromosome": "4", "start_pos": 46723468, "end_pos": 46701282, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073654.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073654.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070670.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070670.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0J0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": 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"start_pos": 188624892, "end_pos": 188598501, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000034798", "url": "https://www.ensembl.org/id/ENSSSCG00000034798" } ] } } ], "crossref": [ { "id": "ENSSSCG00000034798", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034798", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110262314", "url": "https://www.ncbi.nlm.nih.gov/gene/110262314", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008485", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008485", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110262314", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110262314", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CPGIYCG", "url": "https://omabrowser.org/oma/group/CPGIYCG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AIT1", "url": "https://www.orthodb.org/?gene=A0A287AIT1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12740", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12740", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12740:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12740:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05571", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05571", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020958370", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020958370", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AIT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIT1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WCY0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WCY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALCECSAAALITLLVSDPVGVLHIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEPSRILSEGANGH", "length": 311, "header": "tr|A0A287AIT1-1|A0A287AIT1_PIG Isoform 1 of JNK1/MAPK8 associated membrane protein OS=Sus scrofa OX=9823 GN=JKAMP PE=4 SV=2 CANONICAL=A0A287AIT1-1" }, "isoforms": [ { "isoform_ac": "A0A287AIT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIT1/entry#A0A287AIT1-1", "sequence": { "sequence": "MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALCECSAAALITLLVSDPVGVLHIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEPSRILSEGANGH", "length": 311, "header": "tr|A0A287AIT1-1|A0A287AIT1_PIG Isoform 1 of JNK1/MAPK8 associated membrane protein OS=Sus scrofa OX=9823 GN=JKAMP PE=4 SV=2 CANONICAL=A0A287AIT1-1" }, "locus": { "chromosome": "1", "start_pos": 188616920, "end_pos": 188598594, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050869.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050869.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043913.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043913.2" } ] } }, { "isoform_ac": "A0A4X1WCY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIT1/entry#A0A4X1WCY0-1", "sequence": { "sequence": "MKGKNERTLGARGFFAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALCECSAAALITLLVSDPVGVLHIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEPSRILSEGANGH", "length": 325, "header": "tr|A0A4X1WCY0-1|A0A287AIT1_PIG Computationally mapped isoform of JNK1/MAPK8 associated membrane protein OS=Sus scrofa OX=9823 GN=JKAMP PE=4 SV=1 CANONICAL=A0A287AIT1-1" }, "locus": { "chromosome": "1", "start_pos": 188616920, "end_pos": 188599090, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046375.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046375.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055123.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055123.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 286, "start_aa": "Thr", "end_pos": 286, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr286", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCY0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCY0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110262314", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110262314", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0B4KHY1-1", "protein_name": "JNK1/MAPK8-associated membrane protein", "gene_name": "anon-WO0118547.412", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MRMYDALERCPGAYCGRSPLGNNSWSSCGVCPRGSRVNQSYACSPCRDELSTYSWLYLGFMTMLPLMMHCFFIDMDAKDRKFSRKQLILTASAFVEVAISAILATLLMEPMWELRLYACDVRKLTDWYTLFYNPSPNYEARVYCTQEAVYPLQTIVLVFYFLCLVNMFLIRPLVSKIMDVGGRSKAPIYSALYFLPLLTFIHALGCGLIYYSFPYLSVAISMVANAIHYSLKLDQTLKALVHSSVWELKNVVIIAVHWMLLAYGLTSLNYHYAFMCLVPFPTLFYILTVRFTDPAEFRELESRIXCGDVQMQIFHARGTRRSTVVIYV", "length": 328 }, "evidence": [ { "id": "A0A287AIT1", "url": "https://omabrowser.org/oma/group/A0A287AIT1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "A0A8V0Z6F0-1", "protein_name": "JNK1/MAPK8-associated membrane protein", "gene_name": "JKAMP", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MIRSAVDIQPACLGLYCGRVVLAVNGSVEVYGDCGVCPRGQRTDDNKICRECVGSPDRYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALLQHITALFECSIAAIVTLLVSDPAGSLHIRSCKVKKLSDWYTMLYNPSPDYITTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPFLVKKIACGLGKSDRFKSIYAALYFFPVLTVLQAVGGGLLYYAFPYIILVLSLVTLAVYLSASEVESFKDLLVRKKRLVVLLSHWLLHAYGIISIPKLDKLEQDLPLLALVPAPAIFYLMTAKYTEPSRILSEGGNGH", "length": 314 }, "evidence": [ { "id": "A0A287AIT1", "url": "https://omabrowser.org/oma/group/A0A287AIT1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZZT8-1", "protein_name": "JNK1/MAPK8-associated membrane protein", "gene_name": "Jkamp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAVDIQPACLGLYCGKTLLFKNGSSEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECTMAAIITLLVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFVYYAFCLVLMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIVSISRVDRLEHDLPLLALVPTPALFYLFTAKFTEPSRILSEGANGH", "length": 311 }, "evidence": [ { "id": "A0A287AIT1", "url": "https://omabrowser.org/oma/group/A0A287AIT1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3ID72-1", "protein_name": "JNK1/MAPK8-associated membrane protein isoform X1", "gene_name": "Jkamp", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAVDIQPACLGLYCGKTLLFKNGSNEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFVYYAFCLVLMMLLRPLLVKKIACGLGKSERFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIVSISRADRLEHDLPLLALVPTPALFYLFTAKFTEPSRILSEGANGH", "length": 311 }, "evidence": [ { "id": "A0A287AIT1", "url": "https://omabrowser.org/oma/group/A0A287AIT1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8BI36-1", "protein_name": "JNK1/MAPK8-associated membrane protein", "gene_name": "Jkamp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVDIQPACLGLYCGKTLLFKNGSSEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECTMAAIITLLVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFVYYAFCLVLMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIVSISRVDRLEHDLPLLALVPTPALFYLFTAKFTEPSRILSEGANGH", "length": 311 }, "evidence": [ { "id": "A0A287AIT1", "url": "https://omabrowser.org/oma/group/A0A287AIT1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9P055-4", "protein_name": "JNK1/MAPK8-associated membrane protein", "gene_name": "JKAMP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEPSRILSEGANGH", "length": 311 }, "evidence": [ { "id": "A0A287AIT1", "url": "https://omabrowser.org/oma/group/A0A287AIT1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIT1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIT1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIT1" } ], "pmid": "" }, { "name": "response to unfolded protein", "id": "GO:0006986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006986", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIT1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 286 ], "snv_sites": [], 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"MTVERWLRLRGKGLAMLHVTRGVWGSRVRIWPLLPALLGHPRALSSLAVKMGEYRKMWNPTEPRDWAQQYRERFIPFSKDQLLRLLIQALYDPINPDRDTLDQPSLTEPQRLANEQEVLQALEPLLAQANFSQLSEDTLAYALVVHHPQDLVQVTVNLEQYIYMQFWALGQRVGQMPRKSSVGSKRGFFKSPPAERRYFKRVVLAARTKRGHLVLKSFKDTPLEGLEQLLPELKVRTPTLQRALLNITLVVSGMVCFVNVGMVVLSDLKMATSLLLLLFAAFMGLRASKMFGQRRSVQALELAHMLYFRSTSNNSELLSALALRAQDEHAKEALLAHSFLARRPGGARGPPEETSQWLQSEVENWLLAQSGCDVTFNGTRALAHLQALTPSIGMYPPPGFPKLEPVAAITSPKAAPSRDSP", "length": 421, "header": "tr|A0A287AK83-1|A0A287AK83_PIG Isoform 1 of Transmembrane protein 143 OS=Sus scrofa OX=9823 GN=TMEM143 PE=4 SV=3 CANONICAL=A0A287AK83-1" }, "isoforms": [ { "isoform_ac": "A0A287AK83-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AK83/entry#A0A287AK83-1", "sequence": { "sequence": "MTVERWLRLRGKGLAMLHVTRGVWGSRVRIWPLLPALLGHPRALSSLAVKMGEYRKMWNPTEPRDWAQQYRERFIPFSKDQLLRLLIQALYDPINPDRDTLDQPSLTEPQRLANEQEVLQALEPLLAQANFSQLSEDTLAYALVVHHPQDLVQVTVNLEQYIYMQFWALGQRVGQMPRKSSVGSKRGFFKSPPAERRYFKRVVLAARTKRGHLVLKSFKDTPLEGLEQLLPELKVRTPTLQRALLNITLVVSGMVCFVNVGMVVLSDLKMATSLLLLLFAAFMGLRASKMFGQRRSVQALELAHMLYFRSTSNNSELLSALALRAQDEHAKEALLAHSFLARRPGGARGPPEETSQWLQSEVENWLLAQSGCDVTFNGTRALAHLQALTPSIGMYPPPGFPKLEPVAAITSPKAAPSRDSP", "length": 421, "header": "tr|A0A287AK83-1|A0A287AK83_PIG Isoform 1 of Transmembrane protein 143 OS=Sus scrofa OX=9823 GN=TMEM143 PE=4 SV=3 CANONICAL=A0A287AK83-1" }, "locus": { "chromosome": "6", "start_pos": 53784175, "end_pos": 53763984, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050080.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050080.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044315.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044315.3" } ] } }, { "isoform_ac": "A0A5G2Q7C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AK83/entry#A0A5G2Q7C2-1", "sequence": { "sequence": "MTVERWLRLRGKGLAMLHVTRGVWGSRVRIWPLLPALLGHPRALSSLAVKMGEYRKMWNPTEPRDWAQQYRERFIPFSKDQLLRLLIQVTVNLEQYIYMQFWALGQRVGQMPRKSSVGSKRGFFKSPPAERRYFKRVVLAARTKRGHLVLKSFKDTPLEGLEQLLPELKVRTPTLQRALLNITLVVSGMVCFVNVGMVVLSDLKMATSLLLLLFAAFMGLRASKMFGQRRSVQALELAHMLYFRSTSNNSELLSALALRAQDEHAKEALLAHSFLARRPGGARGPPEETSQWLQSEVENWLLAQSGCDVTFNGTRALAHLQALTPSIGMYPPPGFPKLEPVAAITSPKAAPSRDSP", "length": 356, "header": "tr|A0A5G2Q7C2-1|A0A287AK83_PIG Computationally mapped isoform of Transmembrane protein 143 OS=Sus scrofa OX=9823 GN=TMEM143 PE=4 SV=2 CANONICAL=A0A287AK83-1" }, "locus": { "chromosome": "6", "start_pos": 53784175, "end_pos": 53763984, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070552.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070552.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059969.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059969.2" } ] } }, { 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"database": "Ensembl Peptide", "id": "ENSSSCP00000027765.3", "url": "https://www.ensembl.org/id/ENSSSCP00000027765.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7C2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A287AK83", "url": "https://www.uniprot.org/uniprotkb/A0A287AK83" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 246, "end_pos": 248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 313, "end_pos": 315, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AK83-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 421, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AK83-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AK83" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 130, "end_pos": 132 }, { "start_pos": 246, "end_pos": 248 }, { "start_pos": 313, "end_pos": 315 }, { "start_pos": 377, "end_pos": 379 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"evidence": [ { "id": "NP_001422350", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422350" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AM13", "url": "https://www.uniprot.org/uniprotkb/A0A287AM13" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LARP4B", "url": "https://www.uniprot.org/uniprotkb/A0A287AM13", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000011162", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011162", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08036", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08036", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12706", "url": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF26088", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001422350", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422350", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AM13", "url": "https://www.uniprot.org/uniprotkb/A0A287AM13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AM13-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU52", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU52-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RX46", "url": "https://www.uniprot.org/uniprotkb/F1RX46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RX46-1", "url": "https://www.uniprot.org/uniprotkb/F1RX46-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSDQDAKVVAEPQGQRVQEGKDCAHLMNGPISQATSQTSSIPALSQVPTAKVSELNPNAKVWGTHMLHLEAGSTADGGVRAAWEETPRRGQEGLDTHGSGDRSPENAALSDLQESDRTAMSTLGLDHSEYESPPENSETGGNESQPEGQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDMDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYRYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDMSLYAQQRYTASFYFPPVYSPQQPFPLYSLIAPQTWSATHSYLDPPLVTPFPNTGFINGFTSPTFKPAASPLASLRQYPPRSRNPSKSHLRQAIPSAERGPGLLESPSIFNFTAERLINGVRSPQTRQASQPRARIQTPAAFAKREVGPGRVEQSSLESPPGLGRGRKNSFGYRKKREEKFTRSQTQSPTPPRPPSPSFELGLSSFPPLPGAAGHLKTEDSFENRLPGLLAGPAKERSLNADASTNTQPAAPSREPPATCALTAACERAPSPARPPEDPEVVERQRETPSVDRPPPALSTTASKSVQVNGGATELRKPSYAEICQRTSREPPSSVLQPQKEQKPHAVACGKDERKLAEREPPAPRSSPGPAKDQRRPLGRRPSPPAPGRRPHRDQSPPPRSPQ", "length": 728, "header": "tr|A0A287AM13-1|A0A287AM13_PIG Isoform 1 of La ribonucleoprotein 4B OS=Sus scrofa OX=9823 GN=LARP4B PE=4 SV=2 CANONICAL=A0A287AM13-1" }, "isoforms": [ { "isoform_ac": "A0A287AM13-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM13/entry#A0A287AM13-1", "sequence": { "sequence": "MTSDQDAKVVAEPQGQRVQEGKDCAHLMNGPISQATSQTSSIPALSQVPTAKVSELNPNAKVWGTHMLHLEAGSTADGGVRAAWEETPRRGQEGLDTHGSGDRSPENAALSDLQESDRTAMSTLGLDHSEYESPPENSETGGNESQPEGQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDMDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYRYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDMSLYAQQRYTASFYFPPVYSPQQPFPLYSLIAPQTWSATHSYLDPPLVTPFPNTGFINGFTSPTFKPAASPLASLRQYPPRSRNPSKSHLRQAIPSAERGPGLLESPSIFNFTAERLINGVRSPQTRQASQPRARIQTPAAFAKREVGPGRVEQSSLESPPGLGRGRKNSFGYRKKREEKFTRSQTQSPTPPRPPSPSFELGLSSFPPLPGAAGHLKTEDSFENRLPGLLAGPAKERSLNADASTNTQPAAPSREPPATCALTAACERAPSPARPPEDPEVVERQRETPSVDRPPPALSTTASKSVQVNGGATELRKPSYAEICQRTSREPPSSVLQPQKEQKPHAVACGKDERKLAEREPPAPRSSPGPAKDQRRPLGRRPSPPAPGRRPHRDQSPPPRSPQ", "length": 728, "header": "tr|A0A287AM13-1|A0A287AM13_PIG Isoform 1 of La ribonucleoprotein 4B OS=Sus scrofa OX=9823 GN=LARP4B PE=4 SV=2 CANONICAL=A0A287AM13-1" }, "locus": { "chromosome": "10", "start_pos": 68704835, "end_pos": 68645834, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044332.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044332.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044949.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044949.2" } ] } }, { "isoform_ac": "A0A5G2QU52-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM13/entry#A0A5G2QU52-1", "sequence": { "sequence": "MERSTLRRVGTLPTLNGNTDMNSQVCAHPSPKVGGGCSSGPGGLGPDSHVHVVNDAPDVERNGDSGPGTACVGQSVDSEREGGHCVEPLRDSRSESGLLSLRRHRINASSKRRAAAVGFGNRCLPVRADFQASAPSSRDGPGPELLLGPEMLEEQRGHGSLGTGGSRLADKAELSLWSQNSWSYQEEDESCIFEGEGCATRAFRGASACRGGLCADTRAGEAQAHTCDLTPCAVQAATVEAVPPNSKPPDGFKWPGSAVVSSACVLTRAEEDSGAEDAACADSSGSDPCRPESAERGSPGACQRETRKRDIVGVQADPETALDWETNVRKCKAESSWDVLVRVSSGVTRKPNFETNQIEENVTQGVNDCRYEGPSLVSPLSRSQRPGTQRSGVEGASPGDGGRRLQPKQVFSQSAGEASLASGGGASGSEPEPVSGVQEETLGQEQGSGDGGLAGHVGPRRVGRQRAAGPMEQGPALNRTLGFVESSQLGFGRMEVSDTCAGCPCLAGVGLAQGDGHSAVPPGGPGDSKEVVVRDPEDLVPSLLSESPSKGDGQNCPEDVYSQFVNELAWYPVGELVGHVFSEGLADGPGCQEGCPWTKGVAEDAGEEEQILSGHLRVKPWDLEMALVWMEKPPYQPPVAEAGVTWGWQDRGGQLVPTAKVSELNPNAKVWGTHMLHLEAGSTADGGVRAAWEETPRRGQEGLDTHGSGDRSPENAALSDLQESDRTAMSTLGLDHSEYESPPENSETGGNESQPEGQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDMDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYRYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDMSLYAQQRYTASFYFPPVYSPQQPFPLYSLIAPQTWSATHSYLDPPLVTPFPNTGFINGFTSPTFKPAASPLASLRQYPPRSRNPSKSHLRQAIPSAERGPGLLESPSIFNFTAERLINGVRSPQTRQASQPRARIQTPAAFAKREVGPGRVEQSSLESPPGLGRGRKNSFGYRKKREEKFTRSQTQSPTPPRPPSPSFELGLSSFPPLPGAAGHLKTEDSFENRLPGLLAGPAKERSLNADASTNTQPAAPSREPPATCALTAACERAPSPARPPEDPEVVERQRETPSVDRPPPALSTTASKSVQVNGGATELRKPSYAEICQRTSREPPSSVLQPQKEQKPHAVACGKDERKLAEREPPAPRSSPGPAKDQRRPLGRRPSPPAPGRRPHRDQSPPPRSPQ", "length": 1336, "header": "tr|A0A5G2QU52-1|A0A287AM13_PIG Computationally mapped isoform of La ribonucleoprotein 4B OS=Sus scrofa OX=9823 GN=LARP4B PE=4 SV=2 CANONICAL=A0A287AM13-1" }, "locus": { "chromosome": "10", "start_pos": 68704835, "end_pos": 68662792, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088911.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088911.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061660.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061660.2" } ] } }, { "isoform_ac": "F1RX46-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM13/entry#F1RX46-1", "sequence": { "sequence": "MEQGPALNRTLGFVESSQLGFGRMEVSDTCAGCPCLAGVGLAQGDGHSAVPPGGPGDSKEVVVRDPEDLVPSLLSESPSKGDGQNCPEDVYSQFVNELAWYPVGELVGHVFSEGLADGPGCQEGCPWTKGVAEDAGEEEQILSGHLRVKPWDLEMALVWMEKPPYQPPVAEAGVTWGWQDRGGQLVPTAKVSELNPNAKVWGTHMLHLEAGSTADGGVRAAWEETPRRGQEGLDTHGSGDRSPENAALSDLQESDRTAMSTLGLDHSEYESPPENSETGGNESQPEGQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDMDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYRYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDMSLYAQQRYTASFYFPPVYSPQQPFPLYSLIAPQTWSATHSYLDPPLVTPFPNTGFINGFTSPTFKPAASPLASLRQYPPRSRNPSKSHLRQAIPSAERGPGLLESPSIFNFTAERLINGVRSPQTRQASQPRARIQTPAAFAKREVGPGRVEQSSLESPPGLGRGRKNSFGYRKKREEKFTRSQTQSPTPPRPPSPSFELGLSSFPPLPGAAGHLKTEDSFENRLPGLLAGPAKERGPRGGGETAGNPECGQTSSCAEHNRQ", "length": 726, "header": "tr|F1RX46-1|A0A287AM13_PIG Computationally mapped isoform of La ribonucleoprotein 4B OS=Sus scrofa OX=9823 GN=LARP4B PE=4 SV=3 CANONICAL=A0A287AM13-1" }, "locus": { "chromosome": "10", "start_pos": 68703775, "end_pos": 68664202, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012224.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012224.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011910.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011910.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 515, "start_aa": "Thr", "end_pos": 515, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr515", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU52", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU52" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LR80-1", "protein_name": "La ribonucleoprotein 4B", "gene_name": "LARP4B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLPELFSKACGLEGSNTDSLANIELLPVEPQSKQLMTSDQDTKVVAEPQGQRVQEGKDSTHLMNGPISQTTSQSSSIPALSQVPTAKVSELNPNAKVWGTPLLQLEARGAADGGVSTVWEAPPGRGHLGLDTNGDGDKSHDNVGLSDLQESDQTAMSTLGLDHSEYESPPESGETGGNDSQPESQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDMDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREIPESTPVEEVEALFKGDNLPRFINCEFAYNDNWFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDMSLYTQQRYTASFYLPPVYSPQQQFPLYSLIAPQTWSATHSYLDPPLVTPFPNTGFINGFTSPTFKPAASPLASLRQYPPRSRNPSKSHLRHAIPSAERGPGLLESPSIFNFTADRLMNGVRSPQVRQTAQPRARLQNPPAFAKRDVGPGRVEQSSFESSPGLGRGRKSSFGYRKKREEKFTRSQTQSPTPPRPPSPSFELGLSSFPPLPGAAGHLKTEDLFENRLSGLLTGTSKERSLNADASTNTLPAVHPREPLAPCAVSAACERTPSPARPPEDAKVVEKQRETPSVDRPPPALALSTTASKSVQVNGAASELRKPSYAEICQRTSREPPSSPLQPPKEQKPNPVGSGKEERKVTEREPPAPKSSPGPPKDQRRPLGRRPSPPGLGRRPHREQSPPPRPPQ", "length": 765 }, "evidence": [ { "id": "A0A287AM13", "url": "https://omabrowser.org/oma/group/A0A287AM13/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A9J7FI18-1", "protein_name": "La-related protein 4B isoform X1", "gene_name": "Larp4b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTSDQDTKIVAEPQAQRVQEGKDSSHLMNGPISQTTSQTSSIPALTQTPYQLPVSEDGVVWGWQTRGGLFVPTTKVSELNPNAKVWGLHLEASSAAVGVNASWEEAPDHPVDCDQQVIGLDANGDGDKSHENAGLSDLQEADQTDMSTLALDHSEYEPLPESNDTGGNESQPESQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYKYLREEVRTFQGKPIKARIKAKAIAINTFLPKNGFRPLDMNLYTQQRYATSFYLPPVYSPQQQFPLYGLITPQTWSTTHSYLDPPLVTPFPSTGFINGFTSPTFKPAASPLTSLRQYPPRSRNPSKSHLRHAIPSTERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREIGTGRVEPSSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSNFPPLPGAAGNLKAEDLFENRLSGLIIGSSKERNLSTDASTNTVPVVVPREPSVPAPCAVSTAFERSPSPAHLPEDPKVAEKQRETHSVDRLPSTPTTTACKSVQVNGAATELRKPSYAEICQRTSRETPSSPLQPPKEQKPNTVACGKEEKKLAEPVERYREPPALKSTPGAPKDQRRQPGRRPSPPAAGKRLNREQNTPPKSPQ", "length": 760 }, "evidence": [ { "id": "A0A287AM13", "url": "https://omabrowser.org/oma/group/A0A287AM13/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6A0A2-1", "protein_name": "La-related protein 4B", "gene_name": "Larp4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSDQDAKVVAEPQAQRVQEGKDSSHLMNGPISQTTSQTRSLPALTQVPTTKVSELNPNAKVWGTHMLHLEASSAAVGVNAAWEEAPGHPTDCDQQVLGLDANGDGDKSRENAALPDAQEAEQTDMSTLALDHSEYEPLPENNDTGGNESQPESQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYKYLREEVRTFQGKPIKARIKAKAIAINTFLPKNGFRPLDMNLYTQQRYATSFYLPPVYSPQQQFPLYSLITPQTWSTTHSYLDPPLVTPFPSTGFINGFTSPTFKPATSPLTSLRQYPPRSRNPSKSHLRHAIPSTERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREIGTGRVEPSSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSNFPPLPGAAGNLKTEDLFENRLSSLIIGSSKERNLSTDASTNTVPVVGPREPSVPAPCAVSAAFERSPSPVHLPEDPKVAEKQRETQSVDRLPSTPTTTACKSVQVNGAATELRKPSYAEICQRTSKDPSSSSPLQPPKEQKPSTVACGKEEKQLSEPVERHREPPALKSTPGVPKDQRRQPGRRASPPAAGKRLSKEQNTPPKSPQ", "length": 741 }, "evidence": [ { "id": "A0A287AM13", "url": "https://omabrowser.org/oma/group/A0A287AM13/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q92615-1", "protein_name": "La-related protein 4B", "gene_name": "LARP4B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSDQDAKVVAEPQTQRVQEGKDSAHLMNGPISQTTSQTSSIPPLSQVPATKVSELNPNAEVWGAPVLHLEASSAADGVSAAWEEVAGHHADRGPQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPENSETGGNESQPDSQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQQRYATSFYFPPMYSPQQQFPLYSLITPQTWSATHSYLDPPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPPRSRNPSKSHLRHAIPSAERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSKERTLSADASVNTLPVVVSREPSVPASCAVSATYERSPSPAHLPDDPKVAEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQKEQKPNTVGCGKEEKKLAEPAERYREPPALKSTPGAPRDQRRPAGGRPSPSAMGKRLSREQSTPPKSPQ", "length": 738 }, "evidence": [ { "id": "A0A287AM13", "url": "https://omabrowser.org/oma/group/A0A287AM13/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM13", "url": "https://www.uniprot.org/uniprotkb/A0A287AM13" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM13", "url": "https://www.uniprot.org/uniprotkb/A0A287AM13" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of translation", "id": "GO:0045727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045727", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM13", "url": "https://www.uniprot.org/uniprotkb/A0A287AM13" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM13", "url": "https://www.uniprot.org/uniprotkb/A0A287AM13" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" }, { "start_pos": 436, "end_pos": 438, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AM13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AM13" }, { "id": "PS50961", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50961" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HTH La-type RNA-binding", "eco_id": "ECO_0000259", "start_pos": 147, "end_pos": 236, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 515 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 143, "end_pos": 145 }, { "start_pos": 436, "end_pos": 438 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": 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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AH49-1", "uniprot_ac": "A0A287AH49", "uniprot_id": "A0A287AH49_PIG", "mass": { "chemical_mass": 103864.0, "monoisotopic_mass": 103864.0 }, "refseq": {}, "gene_names": [ { "name": "MLIP", "type": "recommended", "evidence": [ { "id": "A0A287AH49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49" } ] } ], "protein_names": [ { "name": "Muscular LMNA interacting protein", "type": "synonym", "evidence": [ { "id": "A0A287AH49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AH49", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MLIP", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49", "locus": { "chromosome": "7", "start_pos": 26561359, "end_pos": 26793724, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001485", "url": "https://www.ensembl.org/id/ENSSSCG00000001485" } ] } } ], "crossref": [ { "id": "A0A287AH49", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AH49", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001485", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001485", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100623023", "url": "https://www.ncbi.nlm.nih.gov/gene/100623023", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31514", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31514", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31514:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31514:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15274", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15274", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A928", "url": "https://www.uniprot.org/uniprotkb/A0A287A928", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A928-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A928-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AH49", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AH49-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8B2", "url": "https://www.uniprot.org/uniprotkb/A0A287B8B2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8B2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8B2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN33", "url": "https://www.uniprot.org/uniprotkb/A0A287BN33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN33-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN33-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQN0", "url": "https://www.uniprot.org/uniprotkb/A0A287BQN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQN0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1FG28", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FG28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1FG28-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FG28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1FIN1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FIN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1FIN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FIN1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1KI02", "url": "https://www.uniprot.org/uniprotkb/A0A8D1KI02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1KI02-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1KI02-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LDI0", "url": "https://www.uniprot.org/uniprotkb/I3LDI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LDI0-1", "url": "https://www.uniprot.org/uniprotkb/I3LDI0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEFEKHEKGSLSNKNLEEKLTVSPGDSEAKPLIFTFVPTVRRLPTHSQLGDTSKFLVKIPEEPSDKTPETINRSHFNEYLTLNAGSQQERDQGTLTDPLEVEGKTTQGRGFKANEPQGMQQSDLFKAEYVFIVDSEGEEEATTSKSEQGPPRGMSTTAARPTSLAISSSLASDSVRPKTRGADLQAPSHPEMPHGMAPQQKHGQFTSSPTASEQLACKPPAFSFVSPTNQKTPPAPVNLSEASVLEEIHTRRLDVTGALVEETATYFQTSAHSAPFSASKGVFSTSQFPHSTQLSGSPLSHPSAAQQKPGLTSEALKKTTAVTSPVLSPSESPRTSSSPASGASLKSNSASYIPVRIITHSLCPSPKPFPSLFHGSSSTVCSHVSSSGNLSKSGVKSPVPSRLSLLTAILKSNPSHQRPLSPASCPTFTLNSLTSSTLALDQKVKQTSPTPKKSLSSCSLRAGSPEQRENQVSGLSQQTFLSPFSTKAAPLPQTPSHISSSPVSLNVEKMPSPSSLKSSPMLSPLQTSTSSSAGLPPVPPPSSSPLSPKGRRDADLRDPGKPRNICPHPSKSASSASSSVSPLTNQRARLSSPEKCYHPSPALSNLINRSKRASAPLSGQGQTPSAPPPPSVSSAGSASLPQMGSSSPPFANLPTQALQLSPSALHSNLTLPSRFGKSESSISDHRSSVSTPPPPISLTRTKELISPCALSMSTGSENKKPKQYKTKSSYKAFAAIPTNILLLEQKALDEPVKTEGISKDNTLDPPLELCFPAQLRQQTEEVCATIDKVLQDSLSMHSSDSPSSSLQTLLSSDSIKIPTTLPRAAGRETKYANLSSPSSTVSETQLTKPGVIRPVPVKSKILLKKEEEIYEPNPFSKYLEDNNDFFSEQDVPAPPKPVSLHPLYKSRLHPPAKSLLHPQALPHADCLTPGPFGHLSSFSLSDEQNSHTLFSHNAFNKIKCLFFLSKSFPGVPIVA", "length": 975, "header": "tr|A0A287AH49-1|A0A287AH49_PIG Isoform 1 of Muscular LMNA interacting protein OS=Sus scrofa OX=9823 GN=MLIP PE=1 SV=2 CANONICAL=A0A287AH49-1" }, "isoforms": [ { "isoform_ac": "A0A287A928-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49/entry#A0A287A928-1", "sequence": { "sequence": "MEFEKHEKGSLSNKNLEEKLTVSPGDSEAKPLIFTFVPTVRRLPTHSQLGDTSKFLVKIPEEPSDKTPETINRSHFNEYLTLNAGSQQERDQGTLTDPLEVEGKTTQGRGFKANEPQGMQQSDLFKAEYVFIVDSEGEEEATTSKSEQGPPRGMSTTAARPTSLAISSSLASDSVRPKTRGADLQAPSHPEMPHGMAPQQKHGQFTSSPTASEQLACKPPAFSFVSPTNQKTPPAPVNLSEASVLEEIHTRRLDVTGALVEETATYFQTSAHSAPFSASKGVFSTSQFPHSTQLSGSPLSHPSAAQQKPGLTSEALKKTTAVTSPVLSPSESPRTSSSPASGASLKSNSASYIPVRIITHSLCPSPKPFPSLFHGSSSTVCSHVSSSGNLSKSGVKSPVPSRLSLLTAILKSNPSHQRPLSPASCPTFTLNSLTSSTLALDQKVKQTSPTPKKSLSSCSLRAGSPEQRENQVSGLSQQTFLSPFSTKAAPLPQTPSHISSSPVSLNVEKMPSPSSLKSSPMLSPLQTSTSSSAGLPPVPPPSSSPLSPKGRRDADLRDPGKPRNICPHPSKSASSASSSVSPLTNQRARLSSPEKCYHPSPALSNLINRSKRASAPLSGQGQTPSAPPPPSVSSAGSASLPQMGSSSPPFANLPTQALQLSPSALHSNLTLPSRFGKSESSISDHRSSVSTPPPPISLTRTKELISPCALSMSTGSENKKPKQYKTKSSYKAFAAIPTNILLLEQKALDEPVKTEGISKDNTLDPPLELCFPAQLRQQTEEVCATIDKVLQDSLSMHSSDSPSSSLQTLLSSDSIKIPTTLPRAAGRETKYANLSSPSSTVSETQLTKPGVIRPVPVKSKILLKKEEEIYEPNPFSKYLEDNNDFFSEQQ", "length": 890, "header": "tr|A0A287A928-1|A0A287AH49_PIG Computationally mapped isoform of Muscular LMNA interacting protein OS=Sus scrofa OX=9823 GN=MLIP PE=1 SV=3 CANONICAL=A0A287AH49-1" }, "locus": { "chromosome": "7", "start_pos": 26793599, "end_pos": 26563117, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059140.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059140.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040294.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040294.3" } ] } }, { "isoform_ac": "A0A287AH49-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49/entry#A0A287AH49-1", "sequence": { "sequence": "MEFEKHEKGSLSNKNLEEKLTVSPGDSEAKPLIFTFVPTVRRLPTHSQLGDTSKFLVKIPEEPSDKTPETINRSHFNEYLTLNAGSQQERDQGTLTDPLEVEGKTTQGRGFKANEPQGMQQSDLFKAEYVFIVDSEGEEEATTSKSEQGPPRGMSTTAARPTSLAISSSLASDSVRPKTRGADLQAPSHPEMPHGMAPQQKHGQFTSSPTASEQLACKPPAFSFVSPTNQKTPPAPVNLSEASVLEEIHTRRLDVTGALVEETATYFQTSAHSAPFSASKGVFSTSQFPHSTQLSGSPLSHPSAAQQKPGLTSEALKKTTAVTSPVLSPSESPRTSSSPASGASLKSNSASYIPVRIITHSLCPSPKPFPSLFHGSSSTVCSHVSSSGNLSKSGVKSPVPSRLSLLTAILKSNPSHQRPLSPASCPTFTLNSLTSSTLALDQKVKQTSPTPKKSLSSCSLRAGSPEQRENQVSGLSQQTFLSPFSTKAAPLPQTPSHISSSPVSLNVEKMPSPSSLKSSPMLSPLQTSTSSSAGLPPVPPPSSSPLSPKGRRDADLRDPGKPRNICPHPSKSASSASSSVSPLTNQRARLSSPEKCYHPSPALSNLINRSKRASAPLSGQGQTPSAPPPPSVSSAGSASLPQMGSSSPPFANLPTQALQLSPSALHSNLTLPSRFGKSESSISDHRSSVSTPPPPISLTRTKELISPCALSMSTGSENKKPKQYKTKSSYKAFAAIPTNILLLEQKALDEPVKTEGISKDNTLDPPLELCFPAQLRQQTEEVCATIDKVLQDSLSMHSSDSPSSSLQTLLSSDSIKIPTTLPRAAGRETKYANLSSPSSTVSETQLTKPGVIRPVPVKSKILLKKEEEIYEPNPFSKYLEDNNDFFSEQDVPAPPKPVSLHPLYKSRLHPPAKSLLHPQALPHADCLTPGPFGHLSSFSLSDEQNSHTLFSHNAFNKIKCLFFLSKSFPGVPIVA", "length": 975, "header": "tr|A0A287AH49-1|A0A287AH49_PIG Isoform 1 of Muscular LMNA interacting protein OS=Sus scrofa OX=9823 GN=MLIP PE=1 SV=2 CANONICAL=A0A287AH49-1" }, "locus": { "chromosome": "7", "start_pos": 26793599, "end_pos": 26599189, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043149.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043149.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043358.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043358.2" } ] } }, { "isoform_ac": "A0A287B8B2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49/entry#A0A287B8B2-1", "sequence": { "sequence": "MEFEKHEKGSLSNKNLEEKLTVSPGDSEAKPLIFTFVPTVRRLPTHSQLGDTSKFLVKIPEEPSDKTPETINRSHFNEYLTLNAGSQQERDQGTLTDPLEVEGKTTQGRGFKANEPQGMQQSDLFKAEYVFIVDSEGEEEATTSKSEQGPPRGMSTTAARPTSLAISSSLASDSVRPKTRGADLQAPSHPEMPHGMAPQQKHGQFTSSPTASEQLACKPPAFSFVSPTNQKTPPAPVNLSEASVLEEIHTRRLDVTGALVEETATYFQTSAHSAPFSASKGVFSTSQFPHSTQLSGSPLSHPSAAQQKPGLTSEALKKTTAVTSPVLSPSESPRTSSSPASGASLKSNSASYIPVRIITHSLCPSPKPFPSLFHGSSSTVCSHVSSSGNLSKSGVKSPVPSRLSLLTAILKSNPSHQRPLSPASCPTFTLNSLTSSTLALDQKVKQTSPTPKKSLSSCSLRAGSPEQRENQVSGLSQQTFLSPFSTKAAPLPQTPSHISSSPVSLNVEKMPSPSSLKSSPMLSPLQTSTSSSAGLPPVPPPSSSPLSPKGRRDADLRDPGKPRNICPHPSKSASSASSSVSPLTNQRARLSSPEKCYHPSPALSNLINRSKRASAPLSGQGQTPSAPPPPSVSSAGSASLPQMGSSSPPFANLPTQALQLSPSALHSNLTLPSRFGKSESSISDHRSSVSTPPPPISLTRTKELISPCALSMSTGSENKKPKQYKTKSSYKAFAAIPTNILLLEQKALDEPVKTEGISKDNTLDPPLELCFPAQLRQQTEEVCATIDKVLQDSLSMHSSDSPSSSLQTLLSSDSIKIPTTLPRAAGRETKYANLSSPSSTVSETQLTKPGVIRPVPVKSKILLKKEEEIYEPNPFSKYLEDNNDFFSEQDVPAPPKPVSLHPLYKSRLHPPAKSLLHPQALPHADCLTPGPFGHLSSFSLSDEQNSHTLFSHNAFNKVRTPPMKMEQK", "length": 968, "header": "tr|A0A287B8B2-1|A0A287B8B2_PIG Computationally mapped isoform of Muscular LMNA interacting protein OS=Sus scrofa OX=9823 GN=MLIP PE=1 SV=3 CANONICAL=A0A287AH49-1" }, "locus": { "chromosome": "7", "start_pos": 26793599, "end_pos": 26563100, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055044.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055044.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052715.3", "url": "https://www.ensembl.org/id/ENSSSCP00000052715.3" } ] } }, { "isoform_ac": "A0A287BN33-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49/entry#A0A287BN33-1", "sequence": { "sequence": "MEFEKHEKGSLSNKNLEEKLTVSPGDSEAKPLIFTFVPTVRRLPTHSQLGDTSKFLVKIPEEPSDKTPETINRSHFNEYLTLNAGSQQERDQGTLTDPLEVEGKTTQGRGFKANEPQGMQQSDLFKAEYVFIVDSEGEEEATTSKSEQGPPRGMSTTAARPTSLAISSSLASDSVRPKTRGADLQAPSHPEMPHGMAPQQKHGQFTSSPTASEQLACKPPAFSFVSPTNQKTPPAPVNLSEASVLEEIHTRRLDVTGALVEETATYFQTSAHSAPFSASKGVFSTSQFPHSTQLSGSPLSHPSAAQQKPGLTSEALKKTTAVTSPVLSPSESPRTSSSPASGASLKSNSASYIPVRIITHSLCPSPKPFPSLFHGSSSTVCSHVSSSGNLSKSGVKSPVPSRLSLLTAILKSNPSHQRPLSPASCPTFTLNSLTSSTLALDQKVKQTSPTPKKSLSSCSLRAGSPEQRENQVSGLSQQTFLSPFSTKAAPLPQTPSHISSSPVSLNVEKMPSPSSLKSSPMLSPLQTSTSSSAGLPPVPPPSSSPLSPKGRRDADLRDPGKPRNICPHPSKSASSASSSVSPLTNQRARLSSPEKCYHPSPALSNLINRSKRASAPLSGQGQTPSAPPPPSVSSAGSASLPQMGSSSPPFANLPTQALQLSPSALHSNLTLPSRFGKSESSISDHRSSVSTPPPPISLTRTKELISPCALSMSTGSENKKPKQYKTKSSYKAFAAIPTNILLLEQKALDEPVKTEGISKDNTLDPPLEHSSDSPSSSLQTLLSSDSIKIPTTLPRAAGRETKYANLSSPSSTVSETQLTKPGVIRPVPVKSKILLKKEEEIYEPNPFSKYLEDNNDFFSEQVSMHVRKSDIWLNNCTNYRYASMNIVCARKCLCDWNSLSNKEDVFFCIIKKNPQVFPGWYFEVFNFLFFPENFLLSPSIVWGIKTLLPIKTSWSH", "length": 956, "header": "tr|A0A287BN33-1|A0A287BN33_PIG Computationally mapped isoform of Muscular LMNA interacting protein OS=Sus scrofa OX=9823 GN=MLIP PE=1 SV=2 CANONICAL=A0A287AH49-1" }, "locus": { "chromosome": "7", "start_pos": 26793599, "end_pos": 26620682, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048682.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048682.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057567.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057567.2" } ] } }, { "isoform_ac": "A0A287BQN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49/entry#A0A287BQN0-1", "sequence": { "sequence": "MEFEKHEKGSLSNKNLEEKLTVSPGDSEAKPLIFTFVPTVRRLPTHSQLGDTSKFLVKIPEEPSDKTPETINRSHFNEYLTLNAGSQQERDQGTLTDPLEVEGKTTQGRGFKANEPQGMQQSDLFKAEYVFIVDSEGEEEATTSKSEQGPPRGMSTTAARPTSLAISSSLASDSVRPKTRGADLQAPSHPEMPHGMAPQQKHGQFTSSPTASEQLACKPPAFSFVSPTNQKTPPAPVNLSEASVLEEIHTRRLDVTGALVEETATYFQTSAHSAPFSASKGVFSTSQFPHSTQLSGSPLSHPSAAQQKPGLTSEALKKTTAVTSPVLSPSESPRTSSSPASGASLKSNSASYIPVRIITHSLCPSPKPFPSLFHGSSSTVCSHVSSSGNLSKSGVKSPVPSRLSLLTAILKSNPSHQRPLSPASCPTFTLNSLTSSTLALDQKVKQTSPTPKKSLSSCSLRAGSPEQRENQVSGLSQQTFLSPFSTKAAPLPQTPSHISSSPVSLNVEKMPSPSSLKSSPMLSPLQTSTSSSAGLPPVPPPSSSPLSPKGRRDADLRDPGKPRNICPHPSKSASSASSSVSPLTNQRARLSSPEKCYHPSPALSNLINRSKRASAPLSGQGQTPSAPPPPSVSSAGSASLPQMGSSSPPFANLPTQALQLSPSALHSNLTLPSRFGKSESSISDHRSSVSTPPPPISLTRTKELISPCALSMSTGSENKKPKVFFACCMVHALFEIWKNLFFFFREKALDEPVKTEGISKDNTLDPPLELCFPAQLRQQTEEVCATIDKVLQDSLSMHSSDSPSSSLQTLLSSDSIKYFFLYFLKTNFIFMKTKPGVIRPVPVKSKILLKKEEEIYEPNPFSKYLEDNNDFFSEQDVPAPPKPVSLHPLYKSRLHPPAKSLLHPQALPHADCLTPGPFGHLSSFSLSDEQNSHTLFSHNAFNKLSHPMVPIPEYETLDSKEVNVRYSWRSGYSFLCDIRL", "length": 980, "header": "tr|A0A287BQN0-1|A0A287BQN0_PIG Computationally mapped isoform of Muscular LMNA interacting protein OS=Sus scrofa OX=9823 GN=MLIP PE=1 SV=3 CANONICAL=A0A287AH49-1" }, "locus": { "chromosome": "7", "start_pos": 26793599, "end_pos": 26573773, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058556.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058556.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058420.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058420.3" } ] } }, { "isoform_ac": "A0A8D1FG28-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49/entry#A0A8D1FG28-1", "sequence": { "sequence": "MEFEKHEKGSLSNKNLEEKLTVSPGDSEAKPLIFTFVPTVRRLPTHSQLGDTSKFLVKIPEEPSDKTPETINRSHFNEYLTLNAGSQQERDQGTLTDPLEVEGKTTQGRGFKANEPQGMQQSDLFKAEYVFIVDSEGEEEATTSKSEQGPPRGMSTTAARPTSLAISSSLASDSVRPKTRGADLQAPSHPEMPHGMAPQQKHGQFTSSPTASEQLACKPPAFSFVSPTNQKTPPAPVNLSEASVLEEIHTRRLDVTGALVEETATYFQTSAHSAPFSASKGVFSTSQFPHSTQLSGSPLSHPSAAQQKPGLTSEALKKTTAVTSPVLSPSESPRTSSSPASGASLKSNSASYIPVRIITHSLCPSPKPFPSLFHGSSSTVCSHVSSSGNLSKSGVKSPVPSRLSLLTAILKSNPSHQRPLSPASCPTFTLNSLTSSTLALDQKVKQTSPTPKKSLSSCSLRAGSPEQRENQVSGLSQQTFLSPFSTKAAPLPQTPSHISSSPVSLNVEKMPSPSSLKSSPMLSPLQTSTSSSAGLPPVPPPSSSPLSPKGRRDADLRDPGKPRNICPHPSKSASSASSSVSPLTNQRARLSSPEKCYHPSPALSNLINRSKRASAPLSGQGQTPSAPPPPSVSSAGSASLPQMGSSSPPFANLPTQALQLSPSALHSNLTLPSRFGKSESSISDHRSSVSTPPPPISLTRTKELISPCALSMSTGSENKKPKQYKTKSSYKAFAAIPTNILLLEQKALDEPVKTEGISKDNTLDPPLELCFPAQLRQQTEEVCATIDKHSSDSPSSSLQTLLSSDSIKIPTTLPRAAGRETKYANLSSPSSTVSETQLTKPGVIRPVPVKSKILLKKEEEIYEPNPFSKYLEDNNDFFSEQLSHPMVPIPEYETLDSKEQ", "length": 900, "header": "tr|A0A8D1FG28-1|A0A287AH49_PIG Computationally mapped isoform of Muscular LMNA interacting protein OS=Sus scrofa OX=9823 GN=MLIP PE=1 SV=1 CANONICAL=A0A287AH49-1" }, "locus": { "chromosome": "7", "start_pos": 26793599, "end_pos": 26563117, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058001.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058001.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056660.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056660.2" } ] } }, { "isoform_ac": "A0A8D1FIN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49/entry#A0A8D1FIN1-1", "sequence": { "sequence": "MNPCFQNGGFRGTAGNNHFQMNSCLLAGSVQTTPQSHFNEYLTLNAGSQQERDQGTLTDPLEVEGKTTQGRGFKANEPQGMQQSDLFKAEYVFIVDSEGEEEATTSKSEQGPPRGMSTTAARPTSLAISSSLASDSVRPKTRGADLQAPSHPEMPHGMAPQQKHGQFTSSPTASEQLACKPPAFSFVSPTNQKTPPAPVNLSEASVLEEIHTRRLDVTGALVEETATYFQTSAHSAPFSASKGVFSTSQFPHSTQLSGSPLSHPSAAQQKPGLTSEALKKTTAVTSPVLSPSESPRTSSSPASGASLKSNSASYIPVRIITHSLCPSPKPFPSLFHGSSSTVCSHVSSSGNLSKSGVKSPVPSRLSLLTAILKSNPSHQRPLSPASCPTFTLNSLTSSTLALDQKVKQTSPTPKKSLSSCSLRAGSPEQRENQVSGLSQQTFLSPFSTKAAPLPQTPSHISSSPVSLNVEKMPSPSSLKSSPMLSPLQTSTSSSAGLPPVPPPSSSPLSPKGRRDADLRDPGKPRNICPHPSKSASSASSSVSPLTNQRARLSSPEKCYHPSPALSNLINRSKRASAPLSGQGQTPSAPPPPSVSSAGSASLPQMGSSSPPFANLPTQALQLSPSALHSNLTLPSRFGKSESSISDHRSSVSTPPPPISLTRTKELISPCALSMSTGSENKKPKQYKTKSSYKAFAAIPTNILLLEQKALDEPVKTEGISKDNTLDPPLELCFPAQLRQQTEEVCATIDKVLQDSLSMHSSDSPSSSLQTLLSSDSIKIPTTLPRAAGRETKYANLSSPSSTVSETQLTKPGVIRPVPVKSKILLKKEEEIYEPNPFSKYLEDNNDFFSEQDVPAPPKPVSLHPLYKSRLHPPAKSLLHPQALPHADCLTPGPFGHLSSFSLSDEQNSHTLFSHNAFNKVRTPRALNPLHA", "length": 931, "header": "tr|A0A8D1FIN1-1|A0A287AH49_PIG Computationally mapped isoform of Muscular LMNA interacting protein OS=Sus scrofa OX=9823 GN=MLIP PE=1 SV=1 CANONICAL=A0A287AH49-1" }, "locus": { "chromosome": "7", "start_pos": 26700024, "end_pos": 26599362, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001657.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001657.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001615.3", "url": "https://www.ensembl.org/id/ENSSSCP00000001615.3" } ] } }, { "isoform_ac": "A0A8D1KI02-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49/entry#A0A8D1KI02-1", "sequence": { "sequence": "MEFEKHEKGSLSNKNLEEKLTSHFNEYLTLNAGSQQERDQGTLTDPLEVEGKTTQGRGFKANEPQGMQQSDLFKAEYVFIVDSEGEEEATTSKSEQGPPRGMSTTAARPTSLAISSSLASDSVRPKTRGADLQAPSHPEMPHGMAPQQKHGQFTSSPTASEQLACKPPAFSFVSPTNQKTPPAPVNLSEASVLEEIHTRRLDVTGALVEETATYFQTSAHSAPFSASKGVFSTSQFPHSTQLSGSPLSHPSAAQQKPGLTSEALKKTTAVTSPVLSPSESPRTSSSPASGASLKSNSASYIPVRIITHSLCPSPKPFPSLFHGSSSTVCSHVSSSGNLSKSGVKSPVPSRLSLLTAILKSNPSHQRPLSPASCPTFTLNSLTSSTLALDQKVKQTSPTPKKSLSSCSLRAGSPEQRENQVSGLSQQTFLSPFSTKAAPLPQTPSHISSSPVSLNVEKMPSPSSLKSSPMLSPLQTSTSSSAGLPPVPPPSSSPLSPKGRRDADLRDPGKPRNICPHPSKSASSASSSVSPLTNQRARLSSPEKCYHPSPALSNLINRSKRASAPLSGQGQTPSAPPPPSVSSAGSASLPQMGSSSPPFANLPTQALQLSPSALHSNLTLPSRFGKSESSISDHRSSVSTPPPPISLTRTKELISPCALSMSTGSENKKPKQYKTKSSYKAFAAIPTNILLLEQKALDEPVKTEGISKDNTLDPPLELCFPAQLRQQTEEVCATIDKVLQDSLSMHSSDSPSSSLQTLLSSDSIKIPTTLPRAAGRETKYANLSSPSSTVSETQLTKPGVIRPVPVKSKILLKKEEEIYEPNPFSKYLEDNNDFFSEQDVPAPPKPVSLHPLYKSRLHPPAKSLLHPQALPHADCLTPGPFGHLSSFSLSDEQNSHTLFSHNAFNKVRTPPMKMEQK", "length": 916, "header": "tr|A0A8D1KI02-1|A0A287AH49_PIG Computationally mapped isoform of Muscular LMNA interacting protein OS=Sus scrofa OX=9823 GN=MLIP PE=1 SV=1 CANONICAL=A0A287AH49-1" }, "locus": { "chromosome": "7", "start_pos": 26793599, "end_pos": 26563100, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055866.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055866.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039896.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039896.2" } ] } }, { "isoform_ac": "I3LDI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49/entry#I3LDI0-1", "sequence": { "sequence": "MNPCFQNGGFRGTAGNNHFQMNSCLLAGSVQTTPQVSPGDSEAKPLIFTFVPTVRRLPTHSQLGDTSKFLVKIPEEPSDKTPETINRSHFNEYLTLNAGSQQERDQGTLTDPLEVEGKTTQGRGFKANEPQGMQQSDLFKAEYVFIVDSEGEEEATTSKSEQGPPRGMSTTAARPTSLAISSSLASDSVRPKTRGADLQAPSHPEMPHGMAPQQKHGQFTSSPTASEQLACKPPAFSFVSPTNQKTPPAPVNLSEASVLEEIHTRRLDVTGALVEETATYFQTSAHSAPFSASKGVFSTSQFPHSTQLSGSPLSHPSAAQQKPGLTSEALKKTTAVTSPVLSPSESPRTSSSPASGASLKSNSASYIPVRIITHSLCPSPKPFPSLFHGSSSTVCSHVSSSGNLSKSGVKSPVPSRLSLLTAILKSNPSHQRPLSPASCPTFTLNSLTSSTLALDQKVKQTSPTPKKSLSSCSLRAGSPEQRENQVSGLSQQTFLSPFSTKAAPLPQTPSHISSSPVSLNVEKMPSPSSLKSSPMLSPLQTSTSSSAGLPPVPPPSSSPLSPKGRRDADLRDPGKPRNICPHPSKSASSASSSVSPLTNQRARLSSPEKCYHPSPALSNLINRSKRASAPLSGQGQTPSAPPPPSVSSAGSASLPQMGSSSPPFANLPTQALQLSPSALHSNLTLPSRFGKSESSISDHRSSVSTPPPPISLTRTKELISPCALSMSTGSENKKPKQYKTKSSYKAFAAIPTNILLLEQKALDEPVKTEGISKDNTLDPPLELCFPAQLRQQTEEVCATIDKVLQDSLSMHSSDSPSSSLQTLLSSDSIKIPTTLPRAAGRETKYANLSSPSSTVSETQLTKPGVIRPVPVKSKILLKKEEEIYEPNPFSKYLEDNNDFFSEQVSMHVRKSDIWLNNCTNYRYASMNIVCARKCLCDWNSLSNKEDVFFCIIKKNPQVFPGWYFEVFNFLFFPENFLLSPSIVWGIKTLLPIKTSWSH", "length": 998, "header": "tr|I3LDI0-1|A0A287AH49_PIG Computationally mapped isoform of Muscular LMNA interacting protein OS=Sus scrofa OX=9823 GN=MLIP PE=1 SV=4 CANONICAL=A0A287AH49-1" }, "locus": { "chromosome": "7", "start_pos": 26700024, "end_pos": 26620682, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029860.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029860.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022111.4", "url": "https://www.ensembl.org/id/ENSSSCP00000022111.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LDI0", "url": "https://www.uniprot.org/uniprotkb/I3LDI0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH49", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49" } ], "pmid": "" }, { "name": "sarcolemma", "id": "GO:0042383", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042383", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH49", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49" } ], "pmid": "" }, { "name": "PML body", "id": "GO:0016605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016605", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH49", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH49", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49" } ], "pmid": "" }, { "name": "lamin binding", "id": "GO:0005521", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005521", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH49", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of cardiac muscle hypertrophy in response to stress", "id": "GO:1903243", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903243", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH49", "url": "https://www.uniprot.org/uniprotkb/A0A287AH49" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 238, "end_pos": 240, "annotation": "n_glycosylation_sequon" }, { "start_pos": 389, "end_pos": 391, "annotation": "n_glycosylation_sequon" }, { "start_pos": 608, "end_pos": 610, "annotation": "n_glycosylation_sequon" }, { "start_pos": 668, "end_pos": 670, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" }, { "start_pos": 833, "end_pos": 835, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AH49-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 975, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AH49-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AH49" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 238, "end_pos": 240 }, { "start_pos": 389, "end_pos": 391 }, { "start_pos": 608, "end_pos": 610 }, { "start_pos": 668, "end_pos": 670 }, { "start_pos": 72, "end_pos": 74 }, { "start_pos": 833, "end_pos": 835 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AN36-1", "uniprot_ac": "A0A287AN36", "uniprot_id": "A0A287AN36_PIG", "mass": { "chemical_mass": 49657.0, "monoisotopic_mass": 49657.0 }, "refseq": {}, "gene_names": [ { "name": "MLPH", "type": "recommended", "evidence": [ { "id": "A0A287AN36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36" } ] } ], "protein_names": [ { "name": "Melanophilin", "type": "synonym", "evidence": [ { "id": "A0A287AN36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AN36", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MLPH", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36", "locus": { "chromosome": "15", 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"https://www.ebi.ac.uk/interpro/entry/IPR010911", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037442", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037442", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041282", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041282", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051745", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051745", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EAQGWLC", "url": "https://omabrowser.org/oma/group/EAQGWLC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14555", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14555", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14555:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14555:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02318", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02318", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04698", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04698", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9824585", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9824585", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZJY4", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZJY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJY4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AN36", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AN36-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK33-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK33-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKKLDLSTLTDEEAKHIWEVVQRDFELRRKEEERLAGLKGKIKKESSRRELLSDTAYPDDTHCARCLQPYRLLSAPKRQCLDCGLCTCQDCGHAHPEGQGWLCDPCHLARVVKMGSLEWYYGHVRARFKRFGSAQVVRSLRGRLRGGGAPEPSPEERSGDSEQMVEDGGPDTAAQAQPVGSKKKRLLPVHGLDFEADSDDSVPSCGHPPSLSSVPAATASLQGPAGSEPTAADVEEAALKRKLEELTRHVSDRGASSAEEESQDEGLDLDSSTPIRELPRPAAQVSTAAGQAPRWEKDPRGPQDPMQPKRTTDEELSELEDRVATTVSEVQQTESEVSDIESRIAALQAAGLTVRPSGKARRKSNLPIFLPRLVGKYGRTAEDSSALPSDEVKAAAVPSLVRGKLNHYSKGQDKEGDPFPRESVYRGSLTQRNPNGRKAAASHSFAKPVMTHQP", "length": 455, "header": "tr|A0A287AN36-1|A0A287AN36_PIG Isoform 1 of Melanophilin OS=Sus scrofa OX=9823 GN=MLPH PE=4 SV=2 CANONICAL=A0A287AN36-1" }, "isoforms": [ { "isoform_ac": "A0A286ZJY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36/entry#A0A286ZJY4-1", "sequence": { "sequence": "MGKKLDLSTLTDEEAKHIWEVVQRDFELRRKEEERLAGLKGKIKKESSRRELLSDTAYPDDTHCARCLQPYRLLSAPKRQCLDCGLCTCQDCGHAHPEGQGWLCDPCHLARVVKMGSLEWYYGHVRARFKRFGSAQVVRSLRGRLRGGGLADGVQARPTSMVSAPEPSPEERSGDSEQMVEDGGPDTAAQAQPVGSKKKRLLPVHGLDFEADSDDSVPSCGHPPSLSSVPAATASLQALTGEPCAEGTSSYQADARASGRHLHPEEQAVGLSPVGPDALAELCLPGDSCSVALGVAATPGTNSLRNEQPPQQYLADVDTSDEEAVGAQRVISHRSRQRSWPSSESQGPAGSEPTAADVEEAALKRKLEELTRHVSDRGASSAEEESQDEGLDLDSSTPIRELPRPAAQVSTAAGQAPRWEKDPRGPQDPMQPKRTTDEELSELEDRVATTVSEVQQTESEVSDIESRIAALQAAGLTVRPSGKARRKSNLPIFLPRLVGKYGRTAEDSSALPSDEVKAAAVPSLVRGKLNHYSKGQDKEGDPFPRESVYRGSLTQRNPNGRKAAASHSFAPHPPASCHHPAGNLTSHQL", "length": 589, "header": "tr|A0A286ZJY4-1|A0A287AN36_PIG Computationally mapped isoform of Melanophilin OS=Sus scrofa OX=9823 GN=MLPH PE=4 SV=2 CANONICAL=A0A287AN36-1" }, "locus": { "chromosome": "15", "start_pos": 137218556, "end_pos": 137181009, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062714.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062714.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031781.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031781.2" } ] } }, { "isoform_ac": "A0A287AN36-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36/entry#A0A287AN36-1", "sequence": { "sequence": "MGKKLDLSTLTDEEAKHIWEVVQRDFELRRKEEERLAGLKGKIKKESSRRELLSDTAYPDDTHCARCLQPYRLLSAPKRQCLDCGLCTCQDCGHAHPEGQGWLCDPCHLARVVKMGSLEWYYGHVRARFKRFGSAQVVRSLRGRLRGGGAPEPSPEERSGDSEQMVEDGGPDTAAQAQPVGSKKKRLLPVHGLDFEADSDDSVPSCGHPPSLSSVPAATASLQGPAGSEPTAADVEEAALKRKLEELTRHVSDRGASSAEEESQDEGLDLDSSTPIRELPRPAAQVSTAAGQAPRWEKDPRGPQDPMQPKRTTDEELSELEDRVATTVSEVQQTESEVSDIESRIAALQAAGLTVRPSGKARRKSNLPIFLPRLVGKYGRTAEDSSALPSDEVKAAAVPSLVRGKLNHYSKGQDKEGDPFPRESVYRGSLTQRNPNGRKAAASHSFAKPVMTHQP", "length": 455, "header": "tr|A0A287AN36-1|A0A287AN36_PIG Isoform 1 of Melanophilin OS=Sus scrofa OX=9823 GN=MLPH PE=4 SV=2 CANONICAL=A0A287AN36-1" }, "locus": { "chromosome": "15", "start_pos": 137219450, "end_pos": 137181009, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060426.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060426.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045412.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045412.2" } ] } }, { "isoform_ac": "A0A5G2QK33-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36/entry#A0A5G2QK33-1", "sequence": { "sequence": "MGKKLDLSTLTDEEAKHIWEVVQRDFELRRKEEERLAGLKGKIKKESSRRELLSDTAYPDDTHCARCLQPYRLLSAPKRQCLDCGLCTCQDCGHAHPEGQGWLCDPCHLARVVKMGSLEWYYGHVRARFKRFGSAQVVRSLRGRLRGGGAPEPSPEERSGDSEQMVEDGGPDTAAQAQPVGSKKKRLLPVHGLDFEADSDDSVPSCGHPPSLSSVPAATASLQALTGEPCAEGTSSYQADARASGRHLHPEEQAVGLSPVGPDALAELCLPGDSCSVALGVAATPGTNSLRNEQPPQQYLADVDTSDEEAVGAQRVISHRSRQRSWPSSESQGPAGSEPTAADVEEAALKRKLEELTRHVSDRGASSAEEESQDEGLDLDSSTPIRELPRPAAQVSTAAGQAPRWEKDPRGPQDPMQPKRTTDEELSELEDRVATTVSEVQQTESEVSDIESRIAALQAAGLTVRPSGKARRKSNLPIFLPRLVGKYGRTAEDSSALPSDEVKAAAVPSLVRGKLNHYSKGQDKEGDPFPRESVYRGSLTQRNPNGRKAAASHSFAKPVMTHQP", "length": 564, "header": "tr|A0A5G2QK33-1|A0A287AN36_PIG Computationally mapped isoform of Melanophilin OS=Sus scrofa OX=9823 GN=MLPH PE=4 SV=2 CANONICAL=A0A287AN36-1" }, "locus": { "chromosome": "15", "start_pos": 137219450, "end_pos": 137181009, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084539.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084539.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062417.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062417.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK33" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9824585", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9824585", "resource": "Reactome", "description": "Regulation of MITF-M-dependent genes involved in pigmentation" } ], "orthologs": [ { "uniprot_canonical_ac": "Q91V27-1", "protein_name": "Melanophilin", "gene_name": "Mlph", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGKRLDLSTLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARVVKIGSLEWYYQHVRARFKRFGSAKVIRSLCGRLQGGGGSEPSLEEGNGDSEQTDEDGDLDTEARDQPLNSKKKKRLLSFRDVDFEEDSDHLVQPCSQTLGLSSVPESAHSLQSLSGEPYSEDTTSLEPEGLEETGARALGCRPSPEVQPCSPLPSGEDAHAELDSPAASCKSAFGTTAMPGTDDVRGKHLPSQYLADVDTSDEDSIQGPRAASQHSKRRARTVPETQILELNKRMSAVEHLLVHLENTVLPPSAQEPTVETHPSADTEEETLRRRLEELTSNISGSSTSSEDETKPDGTFLGGSPKVCTDTGHMETQERNPRSPGNPARPTKSTDEELSEMEDRVAMTASEVQQAESEISDIESRIAALRAAGLTVKPSGKPRRKSGIPIFLPRVTEKLDRIPKTPPADPDDQAKMPKATTAVPSLLRRKYSPSSQGVDSGSFDRKSVYRGSLTQRNPNGRRGTARHIFAKPVMAQQP", "length": 590 }, "evidence": [ { "id": "A0A287AN36", "url": "https://omabrowser.org/oma/group/A0A287AN36/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BV36-1", "protein_name": "Melanophilin", "gene_name": "MLPH", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGKKLDLSKLTDEEAQHVLEVVQRDFDLRRKEEERLEALKGKIKKESSKRELLSDTAHLNETHCARCLQPYQLLVNSKRQCLECGLFTCKSCGRVHPEEQGWICDPCHLARVVKIGSLEWYYEHVKARFKRFGSAKVIRSLHGRLQGGAGPELISEERSGDSDQTDEDGEPGSEAQAQAQPFGSKKKRLLSVHDFDFEGDSDDSTQPQGHSLHLSSVPEARDSPQSLTDESCSEKAAPHKAEGLEEADTGASGCHSHPEEQPTSISPSRHGALAELCPPGGSHRMALGTAAALGSNVIRNEQLPLQYLADVDTSDEESIRAHVMASHHSKRRGRASSESQIFELNKHISAVECLLTYLENTVVPPLAKGLGAGVRTEADVEEEALRRKLEELTSNVSDQETSSEEEEAKDEKAEPNRDKSVGPLPQADPEVGTAAHQTNRQEKSPQDPGDPVQYNRTTDEELSELEDRVAVTASEVQQAESEVSDIESRIAALRAAGLTVKPSGKPRRKSNLPIFLPRVAGKLGKRPEDPNADPSSEAKAMAVPYLLRRKFSNSLKSQGKDDDSFDRKSVYRGSLTQRNPNARKGMASHTFAKPVVAHQS", "length": 600 }, "evidence": [ { "id": "A0A287AN36", "url": "https://omabrowser.org/oma/group/A0A287AN36/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN36", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN36", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36" } ], "pmid": "" }, { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN36", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36" } ], "pmid": "" }, { "name": "myosin binding", "id": "GO:0017022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017022", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN36", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN36", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN36", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN36", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN36", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36" } ], "pmid": "" }, { "name": "cortical actin cytoskeleton", "id": "GO:0030864", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030864", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN36", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN36", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AN36-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 455, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AN36-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AN36" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AN36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AN36" }, { "id": "PS50916", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50916" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RabBD", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 124, "start_aa": "Lys", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AJG5-1", "uniprot_ac": "A0A287AJG5", "uniprot_id": "A0A287AJG5_PIG", "mass": { "chemical_mass": 97589.0, "monoisotopic_mass": 97589.0 }, "refseq": { "ac": "XP_020938367", "name": "serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X14", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938367" }, "gene_names": [ { "name": "PPP6R3", "type": "recommended", "evidence": [ { "id": "A0A287AJG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5" } ] }, { "name": "PPP6R3", "type": "synonym", "evidence": [ { "id": "XP_020938367", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938367" } ] } ], "protein_names": [ { "name": "Protein phosphatase 6 regulatory subunit 3", "type": "synonym", "evidence": [ { "id": "A0A287AJG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X14", "type": "synonym", "evidence": [ { "id": "XP_020938367", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938367" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AJG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPP6R3", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5", "locus": { "chromosome": "2", "start_pos": 4394675, "end_pos": 4523411, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012884", "url": "https://www.ensembl.org/id/ENSSSCG00000012884" } ] } } ], "crossref": [ { "id": "A0A287AJG5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AJG5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012884", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012884", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524129", "url": "https://www.ncbi.nlm.nih.gov/gene/100524129", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007587", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007587", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NEMRHAD", "url": "https://omabrowser.org/oma/group/NEMRHAD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12634", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12634", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12634:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12634:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-171319", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171319", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020938367", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938367", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZVI5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZVI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVI5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AF18", "url": "https://www.uniprot.org/uniprotkb/A0A287AF18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AF18-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF18-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLU3", "url": "https://www.uniprot.org/uniprotkb/A0A287BLU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLU3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SQK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SQK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQK0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SSB5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SSB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSB5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9U8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9U8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9U8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RY63", "url": "https://www.uniprot.org/uniprotkb/F1RY63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RY63-1", "url": "https://www.uniprot.org/uniprotkb/F1RY63-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNDPPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEEKIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQIQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNEPAIVSAIQVLLTLLETRRPTFEGHIEICPPGMSPSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFETTENSTITDQDATGDSLLLKHLFQKCQLIERILDAWEMNEKKQAEGGRRHGYMGHLTRIANCIVHSAEKGPRSASVQQLIRDLPEEVRERWEAFCASSLGETNKRNTVDLVTTCHIHSSSDDEIDFKETGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHVAFTPESQRRSSSGSTDSEESTDSEEEDGAKPDLFEPSGANAEDKMEVDLNEPPSWSANFDVPMETAHGAALDSVGSDVWSTEESVPTKETGWASFSEFTSSLSTKDSLRSNSPVEMETSTEPMDPLTPSVAALAVQPEVPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEGRLSTSQDAACKDAEESPEPPEGKSAAPRPPSRSPEQRTEQPSVPGDAAVNGPV", "length": 873, "header": "tr|A0A287AJG5-1|A0A287AJG5_PIG Isoform 1 of Protein phosphatase 6 regulatory subunit 3 OS=Sus scrofa OX=9823 GN=PPP6R3 PE=1 SV=2 CANONICAL=A0A287AJG5-1" }, "isoforms": [ { "isoform_ac": "A0A286ZVI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5/entry#A0A286ZVI5-1", "sequence": { "sequence": "MHPGRRWPHLSCYSVLLNATSMFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNDPPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEEKIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQIQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNEPAIVSAIQVLLTLLETRRPTFEGHIEICPPGMSPSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFETTENSTITDQDATGDSLLLKHLFQKCQLIERILDAWEMNEKKQAEGGRRHGYMGHLTRIANCIVHSAEKGPRSASVQQLIRDLPEEVRERWEAFCASSLGETNKRNTVDLAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHVAFTPESQRRSSSGSTDSEESTDSEEEDGAKPDLFEPSGANAEDKMEVDLNEPPSWSANFDVPMETAHGAALDSVGSDVWSTEESVPTKETGWASFSEFTSSLSTKDSLRSNSPVEMETSTEPMDPLTPSVAALAVQPEVPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKRIPIELFMKGRVVEKTKGQNSQDPLRRGRRGHHIPLGLGHLPRRRTWPWRSCADRSLHLKRELCPCWGDTSTRREGTNKL", "length": 888, "header": "tr|A0A286ZVI5-1|A0A287AJG5_PIG Computationally mapped isoform of Protein phosphatase 6 regulatory subunit 3 OS=Sus scrofa OX=9823 GN=PPP6R3 PE=1 SV=2 CANONICAL=A0A287AJG5-1" }, "locus": { "chromosome": "2", "start_pos": 4472971, "end_pos": 4404035, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055428.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055428.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035671.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035671.2" } ] } }, { "isoform_ac": "A0A287AF18-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5/entry#A0A287AF18-1", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNDPPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEEKIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQIQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNEPAIVSAIQVLLTLLETRRPTFEGHIEICPPGMSPSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFETTENSTITDQDATGDSLLLKHLFQKCQLIERILDAWEMNEKKQAEGGRRHGYMGHLTRIANCIVHSAEKGPRSASVQQLIRDLPEEVRERWEAFCASSLGETNKRNTVDLVTTCHIHSSSDDEIDFKETGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIVWEKITWLSDLFFWSPCCKERIQQFDDGGSDEEDIWEEKHVAFTPESQRRSSSGSTDSEESTDSEEEDGAKPDLFEPSGANAEDKMEVDLNEPPSWSANFDVPMETAHGAALDSVGSDVWSTEESVPTKETGWASFSEFTSSLSTKDSLRSNSPVEMETSTEPMDPLTPSVAALAVQPEVPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKR", "length": 805, "header": "tr|A0A287AF18-1|A0A287AJG5_PIG Computationally mapped isoform of Protein phosphatase 6 regulatory subunit 3 OS=Sus scrofa OX=9823 GN=PPP6R3 PE=1 SV=2 CANONICAL=A0A287AJG5-1" }, "locus": { "chromosome": "2", "start_pos": 4467698, "end_pos": 4405479, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052161.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052161.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042622.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042622.2" } ] } }, { "isoform_ac": "A0A287AJG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5/entry#A0A287AJG5-1", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNDPPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEEKIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQIQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNEPAIVSAIQVLLTLLETRRPTFEGHIEICPPGMSPSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFETTENSTITDQDATGDSLLLKHLFQKCQLIERILDAWEMNEKKQAEGGRRHGYMGHLTRIANCIVHSAEKGPRSASVQQLIRDLPEEVRERWEAFCASSLGETNKRNTVDLVTTCHIHSSSDDEIDFKETGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHVAFTPESQRRSSSGSTDSEESTDSEEEDGAKPDLFEPSGANAEDKMEVDLNEPPSWSANFDVPMETAHGAALDSVGSDVWSTEESVPTKETGWASFSEFTSSLSTKDSLRSNSPVEMETSTEPMDPLTPSVAALAVQPEVPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEGRLSTSQDAACKDAEESPEPPEGKSAAPRPPSRSPEQRTEQPSVPGDAAVNGPV", "length": 873, "header": "tr|A0A287AJG5-1|A0A287AJG5_PIG Isoform 1 of Protein phosphatase 6 regulatory subunit 3 OS=Sus scrofa OX=9823 GN=PPP6R3 PE=1 SV=2 CANONICAL=A0A287AJG5-1" }, "locus": { "chromosome": "2", "start_pos": 4467698, "end_pos": 4396700, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061252.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061252.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044156.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044156.3" } ] } }, { "isoform_ac": "A0A287BLU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5/entry#A0A287BLU3-1", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNDPPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEEKIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQIQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNEPAIVSAIQVLLTLLETRRPTFEGHIEICPPGMSPSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFETTENSTITDQDATGDSLLLKHLFQKCQLIERILDAWEMNEKKQAEGGRRHGYMGHLTRIANCIVHSAEKGPRSASVQQLIRDLPEEVRERWEAFCASSLGETNKRNTVDLMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHVAFTPESQRRSSSGSTDSEESTDSEEEDGAKPDLFEPSGANAEDKMEVDLNEPPSWSANFDVPMETAHGAALDSVGSDVWSTEESVPTKETGWASFSEFTSSLSTKDSLRSNSPVEMETSTEPMDPLTPSVAALAVQPEVPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEGRLSTSQDAACKDAEESPEPPEGKSAAPRPPSRSPEQRTEQPSVPGDAAVNGPV", "length": 838, "header": "tr|A0A287BLU3-1|A0A287BLU3_PIG Computationally mapped isoform of Protein phosphatase 6 regulatory subunit 3 OS=Sus scrofa OX=9823 GN=PPP6R3 PE=1 SV=2 CANONICAL=A0A287AJG5-1" }, "locus": { "chromosome": "2", "start_pos": 4467698, "end_pos": 4396700, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063174.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063174.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057585.3", "url": "https://www.ensembl.org/id/ENSSSCP00000057585.3" } ] } }, { "isoform_ac": "A0A4X1SQK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5/entry#A0A4X1SQK0-1", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNDPPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEEKIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQIQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNEPAIVSAIQVLLTLLETRRPTFEGHIEICPPGMSPSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFETTENSTITDQDATGDSLLLKHLFQKCQLIERILDAWEMNEKKQAEGGRRHGYMGHLTRIANCIVHSAEKGPRSASVQQLIRDLPEEVRERWEAFCASSLGETNKRNTVDLVTTCHIHSSSDDEIDFKETGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHVAFTPESQRRSSSGSTDSEESTDSEEEDGAKPDLFEPSGANAEDKMEVDLNEPPSWSANFDVPMETAHGAALDSVGSDVWSTEESVPTKETGWASFSEFTSSLSTKDSLRSNSPVEMETSTEPMDPLTPSVAALAVQPEVPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKRVLKSYREEGRLSTSQDAACKDAEESPEPPEGKSAAPRPPSRSPEQRTEQPSVPGDAAVNGPV", "length": 879, "header": "tr|A0A4X1SQK0-1|A0A4X1SQK0_PIG Computationally mapped isoform of Protein phosphatase 6 regulatory subunit 3 OS=Sus scrofa OX=9823 GN=PPP6R3 PE=1 SV=1 CANONICAL=A0A287AJG5-1" }, "locus": { "chromosome": "2", "start_pos": 4467698, "end_pos": 4396700, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063131.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063131.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031171.3", "url": "https://www.ensembl.org/id/ENSSSCP00000031171.3" } ] } }, { "isoform_ac": "A0A4X1SSB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5/entry#A0A4X1SSB5-1", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNDPPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEEKIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQIQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNEPAIVSAIQVLLTLLETRRPTFEGHIEICPPGMSPSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFETTENSTITDQDATGDSLLLKHLFQKCQLIERILDAWEMNEKKQAEGGRRHGYMGHLTRIANCIVHSAEKGPRSASVQQLIRDLPEEVRERWEAFCASSLGETNKRNTVDLVTTCHIHSSSDDEIDFKETGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHVAFTPESQRRSSSGSTDSEESTDSEEEDGAKPDLFEPSGANAEDKMEVDLNEPPSWSANFDVPMETAHGAALDSVGSDVWSTEESVPTKETGWASFSEFTSSLSTKDSLRSNSPVEMETSTEPMDPLTPSVAALAVQPEVPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSVQKTVVEVSWTQNTRA", "length": 833, "header": "tr|A0A4X1SSB5-1|A0A4X1SSB5_PIG Computationally mapped isoform of Protein phosphatase 6 regulatory subunit 3 OS=Sus scrofa OX=9823 GN=PPP6R3 PE=1 SV=1 CANONICAL=A0A287AJG5-1" }, "locus": { "chromosome": "2", "start_pos": 4467698, "end_pos": 4405231, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050172.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050172.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051721.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051721.1" } ] } }, { "isoform_ac": "A0A8W4F9U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5/entry#A0A8W4F9U8-1", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNDPPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNKSVMKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFETTENSTITDQDATGDSLLLKHLFQKCQLIERILDAWEMNEKKQAEGGRRHGYMGHLTRIANCIVHSAEKGPRSASVQQLIRDLPEEVRERWEAFCASSLGETNKRNTVDLVTTCHIHSSSDDEIDFKETGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHVAFTPESQRRSSSGSTDSEESTDSEEEDGAKPDLFEPSGANAEDKMEVDLNEPPSWSANFDVPMETAHGAALDSVGSDVWSTEESVPTKETGWASFSEFTSSLSTKDSLRSNSPVEMETSTEPMDPLTPSVAALAVQPEVPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEGRLSTSQDAACKDAEESPEPPEGKSAAPRPPSRSPEQRTEQPSVPGDAAVNGPV", "length": 732, "header": "tr|A0A8W4F9U8-1|A0A287AJG5_PIG Computationally mapped isoform of Protein phosphatase 6 regulatory subunit 3 OS=Sus scrofa OX=9823 GN=PPP6R3 PE=1 SV=1 CANONICAL=A0A287AJG5-1" }, "locus": { "chromosome": "2", "start_pos": 4467698, "end_pos": 4396700, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099472.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099472.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076050.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076050.1" } ] } }, { "isoform_ac": "F1RY63-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5/entry#F1RY63-1", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNDPPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEEKIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQIQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNEPAIVSAIQVLLTLLETRRPTFEGHIEICPPGMSPSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFETTENSTITDQDATGDSLLLKHLFQKCQLIERILDAWEMNEKKQAEGGRRHGYMGHLTRIANCIVHSAEKGPRSASVQQLIRDLPEEVRERWEAFCASSLGETNKRNTVDLVTTCHIHSSSDDEIDFKETGFSQDSSLQQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHVAFTPESQRRSSSGSTDSEESTDSEEEDGAKPDLFEPSGANAEDKMEVDLNEPPSWSANFDVPMETAHGAALDSVGSDVWSTEESVPTKETGWASFSEFTSSLSTKDSLRSNSPVEMETSTEPMDPLTPSVAALAVQPEVPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEGRLSTSQDAACKDAEESPEPPEGKSAAPRPPSRSPEQRTEQPSVPGDAAVNGPV", "length": 867, "header": "tr|F1RY63-1|A0A287AJG5_PIG Computationally mapped isoform of Protein phosphatase 6 regulatory subunit 3 OS=Sus scrofa OX=9823 GN=PPP6R3 PE=1 SV=4 CANONICAL=A0A287AJG5-1" }, "locus": { "chromosome": "2", "start_pos": 4467698, "end_pos": 4396700, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014085.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014085.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013699.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013699.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZVI5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVI5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-171319", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171319", "resource": "Reactome", "description": "Telomere Extension By Telomerase" }, { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M3AWD3-1", "protein_name": "Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1", "gene_name": "ppp6r3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFWKFDLHSTSHIDTLLEKDDVTLTEVMDEEDVLQECKAQNHKLVDFLVRPQCMEDLVVYITQEPNDDVEEKIKYKYPNISCELLTSDVGQINDRLGEDESLLMKLYSFLQNEPPLNPLLASFFSKVLSILIGRKPEQIVEFLRKREDFVDLMIKHIGTSAIMDLLLRMLTCIEPQQLRQDVLNWLNEEKVIQRLVDMVQPSQDEDRHSNASQSLCEIIRLSRDQMFQVQGSSEPDPLLATLEKQETVEQLLSNIFDKEKNESAIVSVIQILLTLFETRRPAFEGHLEICPPGMNHPSFSVNQSILDAVRPRLKDFHQLLLEPPKKTVLNTTWGVLDPPVGNTRLNVVRLVTSLLQTNTHIINQELIALNTLGVILDMYFKYLWNNFLHTQVEICTAMVLAMPSTQSESPEINRENDQEPIRENILIKHLFQKCQLIQRILDAWGSNDKEQTEGGRRRGYMGHLTRIANSIVHNSDKGPNGSQIQQLISGLSIELPEEDRERWEAFTSGQLADTNKKNTVDLVNTHHIHSSSDDEVDFKDSGFHQDSSLQQAFSDYQMQQMTSNFIEQFGFNDEEFADQDDVGDIPFDRISDINFSLNTNESANVALFEACCKEKIQQFEDAGSDEEDIWDEKDVTFAPEAPRRPRSSGSTDSEESTDSEEEDGKRDPFESTNATSDDRMEVDSGDGTVWTANFDDIPMDTGSSTAPSAPVSNSTASVPESTGWSSPNASGDGETGWADFSSFTPVSPKDPLRCNSPVAMETSIETVDPLGVNAPMQQENTDQWLPNETTPTSPRGKTGDASDPEEEPVSDRITETVTNGSMKETVSLTVDAKTETAVFKRVLKSYREEEKQSTSEDASAKLFVAESGDAEKSNCPSSNCQKPGLKHLEKAKSPCEALNGPLEDAADMDEAKSEQCTANPEAAVNGPA", "length": 928 }, "evidence": [ { "id": "A0A287AJG5", "url": "https://omabrowser.org/oma/group/A0A287AJG5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A9J7JKW5-1", "protein_name": "Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1", "gene_name": "Ppp6r3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLVTTCHIHSSSDDEIDFKDTGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQSHLLLRLSQWSEGIGQAKASAAEGPRPYTRPRR", "length": 889 }, "evidence": [ { "id": "A0A287AJG5", "url": "https://omabrowser.org/oma/group/A0A287AJG5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1MAH5-1", "protein_name": "Protein phosphatase 6, regulatory subunit 3", "gene_name": "Ppp6r3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMSHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILDAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSALVQQLIKGLPDGVRERWEAFCTDSLGEANKRNTADLVTTCHIHSSSDDEIDFKDTGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPTKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVGPLTPGAAALASQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDTEETPESAEAKCTAPRTPNSSPEQRTDQPSMPGDTSVNGPV", "length": 873 }, "evidence": [ { "id": "A0A287AJG5", "url": "https://omabrowser.org/oma/group/A0A287AJG5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5H9R7-1", "protein_name": "Serine/threonine-protein phosphatase 6 regulatory subunit 3", "gene_name": "PPP6R3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNDSPLNPLLASFFSKVLSILISRKPEQIVDFLKKKHDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEEKIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQIQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMSHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILNMFFKYTWNNFLHTQVEICIALILASPFENTENATITDQDSTGDNLLLKHLFQKCQLIERILEAWEMNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSALVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLVTTCHIHSSSDDEIDFKETGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFEPSSANTEDKMEVDLSEPPNWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPTKETGWASFSEFTSSLSTKDSLRSNSPVEMETSTEPMDPLTPSAAALAVQPEAAGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEGKLSTSQDAACKDAEECPETAEAKCAAPRPPSSSPEQRTGQPSAPGDTSVNGPV", "length": 873 }, "evidence": [ { "id": "A0A287AJG5", "url": "https://omabrowser.org/oma/group/A0A287AJG5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q922D4-1", "protein_name": "Serine/threonine-protein phosphatase 6 regulatory subunit 3", "gene_name": "Ppp6r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMSHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSTGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSALVQQLIKDLPDEVRERWETFCTNSLGETNKRNTVDLAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPTKETGWASFSEFTSSLSTKESLRSNSPVEMETSTESVDPLTPGAAALATQPEAPGSMAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDAEETPEPAEAKCTAPLTPSSSPEQRTDQPSMPSDPSVNGPV", "length": 844 }, "evidence": [ { "id": "A0A287AJG5", "url": "https://omabrowser.org/oma/group/A0A287AJG5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5" } ], "pmid": "" }, { "name": "protein phosphatase binding", "id": "GO:0019903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019903", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 358, "end_pos": 360, "annotation": "n_glycosylation_sequon" }, { "start_pos": 409, "end_pos": 411, "annotation": "n_glycosylation_sequon" }, { "start_pos": 577, "end_pos": 579, "annotation": "n_glycosylation_sequon" }, { "start_pos": 587, "end_pos": 589, "annotation": "n_glycosylation_sequon" }, { "start_pos": 593, "end_pos": 595, "annotation": "n_glycosylation_sequon" }, { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AJG5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 873, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AJG5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AJG5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 210, "end_pos": 212 }, { "start_pos": 231, "end_pos": 233 }, { "start_pos": 302, "end_pos": 304 }, { "start_pos": 358, "end_pos": 360 }, { "start_pos": 409, "end_pos": 411 }, { "start_pos": 577, "end_pos": 579 }, { "start_pos": 587, "end_pos": 589 }, { "start_pos": 593, "end_pos": 595 }, { "start_pos": 79, "end_pos": 81 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AKX1-1", "uniprot_ac": "A0A287AKX1", "uniprot_id": "A0A287AKX1_PIG", "mass": { "chemical_mass": 58432.0, "monoisotopic_mass": 58432.0 }, "refseq": {}, "gene_names": [ { "name": "BBS4", "type": "recommended", "evidence": [ { "id": "A0A287AKX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ] } ], "protein_names": [ { "name": "BBSome complex member BBS4", "type": "recommended", "evidence": [ { "id": "A0A287AKX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BBS4", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1", "locus": { "chromosome": "7", "start_pos": 60631914, "end_pos": 60693334, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001924", "url": "https://www.ensembl.org/id/ENSSSCG00000001924" } ] } } ], "crossref": [ { "id": "A0A287AKX1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AKX1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001924", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001924", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513212", "url": "https://www.ncbi.nlm.nih.gov/gene/100513212", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YCEVAWH", "url": "https://omabrowser.org/oma/group/YCEVAWH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR44186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44186:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44186:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13414", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13414", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5620922", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620922", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZXM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZXM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXM9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI91", "url": "https://www.uniprot.org/uniprotkb/F1SI91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI91-1", "url": "https://www.uniprot.org/uniprotkb/F1SI91-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEERLATRTQFLASAESQKPQLKKAPEFPILEKQNWLIHLHYIRKDYEACKAIIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAILSPQCADNLKQVARSLFLLGKHKAATEVYNEAAKLNQKDWEICHNLGVCYIYLKQFDKAQDQLHNALHLNRHDLTYIMLGKIHLLEGDLDKAIEIYKKAVEFSPENTELLTTLGLLYLQLGIYQKAFEHLGNALTYDPTNYKAILAAGSMMQTHGDFEVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDLENAKRAYAEAVRLDKCNPLVNLNYAVLLYNQGEKRGALAQYQEMEKKVNLLKDSSSLEFDPEMVEMAQKLGAALQAGEALVWTKPVKDPKSKHRTPSTSKTTSVQQPLGSNQALGQAMSSAATYRKLPSGAGGTPQPTKPPSLPLEPEPTVEAQPTGASAQIREKQV", "length": 521, "header": "tr|A0A287AKX1-1|A0A287AKX1_PIG Isoform 1 of BBSome complex member BBS4 OS=Sus scrofa OX=9823 GN=BBS4 PE=3 SV=2 CANONICAL=A0A287AKX1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZXM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1/entry#A0A286ZXM9-1", "sequence": { "sequence": "MAEERLATHLEFPGPGSDPSHSFDLYHCARLGIEPASWCCRDATDPVAHTPEFPILEKQNWLIHLHYIRKDYEACKAIIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAILSPQCADNLKQVARSLFLLGKHKAATEVYNEAAKLNQKDWEICHNLGVCYIYLKQFDKAQDQLHNALHLNRHDLTYIMLGKIHLLEGDLDKAIEIYKKAVEFSPENTELLTTLGLLYLQLGIYQKAFEHLGNALTYDPTNYKAILAAGSMMQTHGDFEVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDLENAKRAYAEAVRLDKCNPLVNLNYAVLLYNQGEKRGALAQYQEMEKKVNLLKDSSSLEFDPEMVEMAQKLGAALQAGEALVWTKPVKDPKSKHRTPSTSKTTSVQQPLGSNQALGQAMSSAATYRKLPSGAGGTPQPTKPPSLPLEPEPTVEAQPTGASAQIREKQV", "length": 545, "header": "tr|A0A286ZXM9-1|A0A287AKX1_PIG Computationally mapped isoform of BBSome complex member BBS4 OS=Sus scrofa OX=9823 GN=BBS4 PE=3 SV=1 CANONICAL=A0A287AKX1-1" }, "locus": { "chromosome": "7", "start_pos": 60693309, "end_pos": 60632804, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047516.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047516.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036217.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036217.2" } ] } }, { "isoform_ac": "A0A287AKX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1/entry#A0A287AKX1-1", "sequence": { "sequence": "MAEERLATRTQFLASAESQKPQLKKAPEFPILEKQNWLIHLHYIRKDYEACKAIIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAILSPQCADNLKQVARSLFLLGKHKAATEVYNEAAKLNQKDWEICHNLGVCYIYLKQFDKAQDQLHNALHLNRHDLTYIMLGKIHLLEGDLDKAIEIYKKAVEFSPENTELLTTLGLLYLQLGIYQKAFEHLGNALTYDPTNYKAILAAGSMMQTHGDFEVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDLENAKRAYAEAVRLDKCNPLVNLNYAVLLYNQGEKRGALAQYQEMEKKVNLLKDSSSLEFDPEMVEMAQKLGAALQAGEALVWTKPVKDPKSKHRTPSTSKTTSVQQPLGSNQALGQAMSSAATYRKLPSGAGGTPQPTKPPSLPLEPEPTVEAQPTGASAQIREKQV", "length": 521, "header": "tr|A0A287AKX1-1|A0A287AKX1_PIG Isoform 1 of BBSome complex member BBS4 OS=Sus scrofa OX=9823 GN=BBS4 PE=3 SV=2 CANONICAL=A0A287AKX1-1" }, "locus": { "chromosome": "7", "start_pos": 60693309, "end_pos": 60632804, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044273.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044273.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044548.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044548.2" } ] } }, { "isoform_ac": "F1SI91-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1/entry#F1SI91-1", "sequence": { "sequence": "MIWNTRNSAYTFTAPEFPILEKQNWLIHLHYIRKDYEACKAIIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAILSPQCADNLKQVARSLFLLGKHKAATEVYNEAAKLNQKDWEICHNLGVCYIYLKQFDKAQDQLHNALHLNRHDLTYIMLGKIHLLEGDLDKAIEIYKKAVEFSPENTELLTTLGLLYLQLGIYQKAFEHLGNALTYDPTNYKAILAAGSMMQTHGDFEVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDLENAKRAYAEAVRLDKCNPLVNLNYAVLLYNQGEKRGALAQYQEMEKKVNLLKDSSSLEFDPEMVEMAQKLGAALQAGEALVWTKPVKDPKSKHRTPSTSKTTSVQQPLGSNQALGQAMSSAATYRKLPSGAGGTPQPTKPPSLPLEPEPTVEAQPTGASAQIREKQV", "length": 509, "header": "tr|F1SI91-1|A0A287AKX1_PIG Computationally mapped isoform of BBSome complex member BBS4 OS=Sus scrofa OX=9823 GN=BBS4 PE=3 SV=3 CANONICAL=A0A287AKX1-1" }, "locus": { "chromosome": "7", "start_pos": 60664068, "end_pos": 60632804, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002153.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002153.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002102.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002102.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 488, "start_aa": "Thr", "end_pos": 488, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr488", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SI91", "url": "https://www.uniprot.org/uniprotkb/F1SI91" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5620922", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620922", "resource": "Reactome", "description": "BBSome-mediated cargo-targeting to cilium" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2N4D2-1", "protein_name": "BBSome complex member BBS4", "gene_name": "Bbs4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEEKLRMKTQVPESQKPRPKKALEFPIVERLNWLIHLHYIRKDYEACKAVIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAVLSPQCADNLKQVARSLFLLGKHKAATEVYNEAAKLNQKDWEICHNLGVCYTYLKQFSKAQDQLHSALQLNKHDLTYIMLGKIHLLEGDLDKAIEIYKKAVEFSPENTDLLTTLGLLYLQLGVYQKAFEHLGNALTYDPANYKAILAAGSMMQTHGDFDVALTKYRVVACAIPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDTENAKRAYAEAVRLDKCNPLVNLNYAVLLYNQGDKKGALAQYQEMEKKVNFLKDNSTLEFDSEMVEMAQKLGAALQVGEALVWTKPVKDPKSKHRTNSASKSAALQQPLGSNQALGQAMSSAAAYRKLPSGAVGAQLTKPPSLPLEPEPESTVEASPTEASEQKKEK", "length": 517 }, "evidence": [ { "id": "A0A287AKX1", "url": "https://omabrowser.org/oma/group/A0A287AKX1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I6AHB5-1", "protein_name": "BBSome complex member BBS4", "gene_name": "Bbs4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLERYSFRRCTLACSDSVDLFHLLGSTEMPMKTQVPASIESQKPRPKKAPEFPIVEKLNWLIHLYYIRKDYEACKAVIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAVLSPQCADNLKQVARSLFLLGKHKAATEVYNEAAKLNQKDWEICHNLGVCYTYLKQFSKAQDQLHSALQLNKHDLTYIMLGKIHLLQGDLDKAIEIYKKAVEFSPENTELLTTLGLLYLQLGVYQKAFEHLGNALTYDPANYKAILAAGSMMQTHGDFDVALTKYRVVACAIPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDIENAKRAYVEAVRLDKCNPLVNLNYAVLLYNQGEKKGALAQYQEMEKKVHFLKDNNPLEFDSEMVEMAQKLGAALQVGEALVWTKPVKDPKSKHRTNSGSKSATLQQPLGSFQALGQAMSSAAAHRKIPSGAVGAQLTKPPSLPLEPEPEPTVEASPTEASEQNKEK", "length": 544 }, "evidence": [ { "id": "A0A287AKX1", "url": "https://omabrowser.org/oma/group/A0A287AKX1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0ZKJ3-1", "protein_name": "BBSome complex member BBS4", "gene_name": "BBS4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAEPQAGPVSSSPVVAGPPKPHPKRGKKEERRLLCSQSVPEIPVLERRNWFIYLLYVRREYDECKAVIKEQLQESHGRCEYAVYVQALIFRLEGKIQESLELFQTCSILNPRSADNLKQVARSLFLLGKHKAAIEVYNEAAKLDEKDWEISHNLGVCYMYLKHFNKARDQLNNALEMNRHDLTYMMLGKIHLLEGETEKAIEVYKKAVEFSPENTDLLTKLGLIYLQLGDYQKAFEHLGKALTYDQGNYKATLAAGSMMQAHGDYDVALSKYRAVISSMPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDIENAKRSYEQAVALDKCNPLVNLNYAVLLYNHGDKKGALCQYQEMEKKVTALKENSTLDFDPEMVEVAQKMGTALQVGESQVWTKPAKESRSKQRAAPSGKSASMQQQLGSNQALGQAMSSAAGYGKNMQLPPGAGALATPAKPPSLPLEPEPGPEETSAPAEAKEQRQEKHKSRQAAD", "length": 545 }, "evidence": [ { "id": "A0A287AKX1", "url": "https://omabrowser.org/oma/group/A0A287AKX1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A1Z8E9-1", "protein_name": "BBSome complex member BBS4 homolog", "gene_name": "BBS4", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MYEPGTEQINCNGRLIELPTLEVVRPAPKMPSDANIDWLLHIYFTRREFTRCRRLIERELNRHLNPEYLYFVQGLIDREEGNHIEALRHLQKSAELNPRNIETYKEIGRTLYIMGRFSQALGVFREAEQRSSRQDHEIYHYLGELLYRAATTQSQKDVASQQQDEARTYFELAVQSGRKLESYVRLAELYRKDKQYQKAIEILENCLHLTPENSEVLIEISVLYLKINETQKAHDRLAEVVSIERKCSPKGLLAFGAILQSRNDIDGALSKYSQIANAEPEIAELWNNIGLCFFKKQKFIVAISSLRKSVWLSPLNYNALYNLSLIYIASEQYASAFHTLAAAINLRKDNAECYMLLGLCLRKLDDMENAFVALERASSMATGQQGAGRNPLVVLNFALFCYETGRLALSTEQYNRFMSQAQDLLLPTEYKFQATKLKSLLRISNQGNGILLDSADMGESDLGHNRATELLPDELPLEVNAVVSQN", "length": 486 }, "evidence": [ { "id": "A0A287AKX1", "url": "https://omabrowser.org/oma/group/A0A287AKX1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "E7EXH4-1", "protein_name": "BBSome complex member BBS4", "gene_name": "bbs4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADDAMRTDVQLPVATELKKPRLKKAPELPILEKRNWLIHLHYIRKDYETCKAIVKEQLHETQGMCEYAVYVQALIMRLEGKIQESLELFQSCAIINPTSSDNLKQVARSLFLLGKHKAAIEVYNEAARLNQKDWEISHNLGVCYIYTKDFRSAEEQLNLALQLNKHDLTYMMLGKIHLLQGDTEKAIDVYKSAVEFSPENTELLTTLGLLYMQLGKYQKAFEHLGNALTYDPNNFKAILAAGSMMQTHGDYDVAMNKYRVAAYAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLSPFDWKILYNLGLVHLTMQQFASAFHFLSAAINLRPRMSELYMLLAVALTNLDDAENARRSYEQAVQIDESSPLVNLNFAVFLYNQGDKKAALLQYQEMERKVNTQLENSSNTEFDPELVEMAQKLGGALQAGENLYWSKPGKDGKTSQRSSSSKPSGSQQPLGTNQALGQAMSSAAGFSKSMQISAEADVSRAPSPPAGDPEDEDEVEDAAGPAKPKDKKGRAKPVAE", "length": 528 }, "evidence": [ { "id": "A0A287AKX1", "url": "https://omabrowser.org/oma/group/A0A287AKX1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1JQ97-1", "protein_name": "BBSome complex member BBS4", "gene_name": "BBS4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAEEKLSARTQLPVSAESQKPVLKKAPEFPILEKQNWLIHLYYIQKDYEACKAVIKEQLQETHGLCEYAIYVQALIFRLEGNIQESLRLFQMCAFLSPQCADNLKQVARSLFLLGKHKAAIEVYNEAAKLNQKDWEICHNLGVCYIYLKQFDKAQDQLHNALHLNRHDLTYIMLGKIFLLKGDLDKAIEIYKKAVEFSPENTELLTTLGLLYLQLGIYQKAFEHLGNTLTYDPTNYKAILAAGSMMQTHGDFDVALTKYKVVACAVIESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPLDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDSENAKRAYEEAVRLDKCNPLVNLNYAVLLYNQGEKRDALAQYQEMEKKVNLLKYSSSLEFDPEMVEVAQKLGAALQVGEALVWTKPVKDPKSKHQTASTSKAAGFQQPLGSNQALGQAMSSAATCRKLSSGAGGTSQLTKPPSLPLEPEPTVEAQPTEASAQTREK", "length": 519 }, "evidence": [ { "id": "A0A287AKX1", "url": "https://omabrowser.org/oma/group/A0A287AKX1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8C1Z7-1", "protein_name": "BBSome complex member BBS4", "gene_name": "Bbs4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEVKLGMKTQVPASVESQKPRSKKAPDFPIVEKQNWLIHLHYIRKDYEACKAVIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAVLSPQCADNLKQVARSLFLLGKHKAATEVYNEAAKLNQKDWEICHNLGVCYTYLKQFNKAQDQLHSALQLNKHDLTYIMLGKIHLLQGDLDKAIEIYKKAVEFSPENTELLTTLGLLYLQLGVYQKAFEHLGNALTYDPANYKAILAAGSMMQTHGDFDVALTKYRVVACAIPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDIENARRAYVEAVRLDKCNPLVNLNYAVLLYNQGEKKSALAQYQEMEKKVNFLKDNSPLEFDSEMVEMAQKLGAALQVGEALVWTKPVKDPKTKHRTNSGSKSATLQQPLGSIQALGQAMSSAAAYRKILSGAVGAQLPKPPSLPLEPEPEPTVEASPTEASEQKKEK", "length": 520 }, "evidence": [ { "id": "A0A287AKX1", "url": "https://omabrowser.org/oma/group/A0A287AKX1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96RK4-1", "protein_name": "BBSome complex member BBS4", "gene_name": "BBS4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEERVATRTQFPVSTESQKPRQKKAPEFPILEKQNWLIHLHYIRKDYEACKAVIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAVLSPQSADNLKQVARSLFLLGKHKAAIEVYNEAAKLNQKDWEISHNLGVCYIYLKQFNKAQDQLHNALNLNRHDLTYIMLGKIHLLEGDLDKAIEVYKKAVEFSPENTELLTTLGLLYLQLGIYQKAFEHLGNALTYDPTNYKAILAAGSMMQTHGDFDVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDIENAKRAYAEAVHLDKCNPLVNLNYAVLLYNQGEKKNALAQYQEMEKKVSLLKDNSSLEFDSEMVEMAQKLGAALQVGEALVWTKPVKDPKSKHQTTSTSKPASFQQPLGSNQALGQAMSSAAAYRTLPSGAGGTSQFTKPPSLPLEPEPAVESSPTETSEQIREK", "length": 519 }, "evidence": [ { "id": "A0A287AKX1", "url": "https://omabrowser.org/oma/group/A0A287AKX1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 13, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "motile cilium", "id": "GO:0031514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031514", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "photoreceptor inner segment", "id": "GO:0001917", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001917", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "ciliary membrane", "id": "GO:0060170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060170", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "photoreceptor connecting cilium", "id": "GO:0032391", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032391", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "photoreceptor outer segment", "id": "GO:0001750", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001750", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "BBSome", "id": "GO:0034464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034464", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "pericentriolar material", "id": "GO:0000242", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000242", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "non-motile cilium", "id": "GO:0097730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097730", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "ciliary transition zone", "id": "GO:0035869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035869", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 15, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "sensory perception", "id": "GO:0007600", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007600", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "fat cell differentiation", "id": "GO:0045444", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045444", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "mitotic cytokinesis", "id": "GO:0000281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000281", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "centrosome cycle", "id": "GO:0007098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007098", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "maintenance of protein location in nucleus", "id": "GO:0051457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051457", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "protein localization to cilium", "id": "GO:0061512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061512", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "regulation of cytokinesis", "id": "GO:0032465", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032465", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "protein localization to centrosome", "id": "GO:0071539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071539", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "negative regulation of appetite by leptin-mediated signaling pathway", "id": "GO:0038108", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038108", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "regulation of cilium beat frequency involved in ciliary motility", "id": "GO:0060296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060296", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "microtubule anchoring at centrosome", "id": "GO:0034454", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034454", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "microtubule cytoskeleton organization", "id": "GO:0000226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000226", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "cell projection organization", "id": "GO:0030030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030030", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "beta-tubulin binding", "id": "GO:0048487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048487", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "alpha-tubulin binding", "id": "GO:0043014", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043014", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "RNA polymerase II-specific DNA-binding transcription factor binding", "id": "GO:0061629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061629", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" }, { "name": "dynactin binding", "id": "GO:0034452", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034452", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AKX1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 521, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AKX1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AKX1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 488 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AJI4-1", "uniprot_ac": "A0A287AJI4", "uniprot_id": "A0A287AJI4_PIG", "mass": { "chemical_mass": 54542.0, "monoisotopic_mass": 54542.0 }, "refseq": { "ac": "XP_020923238", "name": "alpha-2-antiplasmin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923238" }, "gene_names": [ { "name": "SERPINF2", "type": "recommended", "evidence": [ { "id": "A0A287AJI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI4" } ] }, { "name": "SERPINF2", "type": "synonym", "evidence": [ { "id": "XP_020923238", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923238" } ] } ], "protein_names": [ { "name": "Serpin family F member 2", "type": "synonym", "evidence": [ { "id": "A0A287AJI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI4/entry#names_and_taxonomy" } ] }, { "name": "alpha-2-antiplasmin", "type": "synonym", "evidence": [ { "id": "XP_020923238", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923238" } ] } ], "function": [], 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"https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02053", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525254", "url": "https://www.ncbi.nlm.nih.gov/gene/100525254", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000215", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000215", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033833", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033833", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525254", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525254", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SCEMTWK", "url": "https://omabrowser.org/oma/group/SCEMTWK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AJI4", "url": "https://www.orthodb.org/?gene=A0A287AJI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00079", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00079", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114608", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75205", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75205", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020923238", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923238", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AJI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B9B3", "url": "https://www.uniprot.org/uniprotkb/A0A287B9B3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B9B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B9B3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN21-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN21-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSG7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R885", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R885", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R885-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R885-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFF8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFF8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALLSGLLVLSLFCLHVLPPVSAMDPLGLQLMIGQGQEKLSPLSLLELDNQEHGGHTALNEAPGECKGTPTPEQTRRLAQAMMAFTRDLFSLVARSSTRPNLVLSPLSVALALSHLALGAQNQTLQRLQQVLHADSGPCLPYLLSRLCQDLGPGAFRLAARMYLQKGFPIKEDFLEQSEELFGAKPMSLTGRKGDDLANINQWVKEATEGKIEDFLSDLPEDTVLLLLNAIHFQGFWRSKFDPNLTQRDTFHLDEQFTVPVDMMQARMYPLRWFLLEQPEIQVAYFPFKNNMSFVVMVPIHFEWNVSQVLANLSWDILHQPLLRERPTKVQLPKLHLKYQLDLVATLSQLGLQGLFQAPDLRGISDESLVVSSVQHQSTLELSEAGVEAAAATSTAMSRMSLSFSVNRPFLFFILEDTTSLPLFVGSVRNPNPGAQPERKEQQDSPDSRYPFWNQKAFPRGDKPFYPDLKLAPPSEEEDYPQPSGPK", "length": 487, "header": "tr|A0A287AJI4-1|A0A287AJI4_PIG Isoform 1 of Serpin family F member 2 OS=Sus scrofa OX=9823 GN=SERPINF2 PE=1 SV=2 CANONICAL=A0A287AJI4-1" }, "isoforms": [ { "isoform_ac": "A0A287AJI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI4/entry#A0A287AJI4-1", "sequence": { "sequence": "MALLSGLLVLSLFCLHVLPPVSAMDPLGLQLMIGQGQEKLSPLSLLELDNQEHGGHTALNEAPGECKGTPTPEQTRRLAQAMMAFTRDLFSLVARSSTRPNLVLSPLSVALALSHLALGAQNQTLQRLQQVLHADSGPCLPYLLSRLCQDLGPGAFRLAARMYLQKGFPIKEDFLEQSEELFGAKPMSLTGRKGDDLANINQWVKEATEGKIEDFLSDLPEDTVLLLLNAIHFQGFWRSKFDPNLTQRDTFHLDEQFTVPVDMMQARMYPLRWFLLEQPEIQVAYFPFKNNMSFVVMVPIHFEWNVSQVLANLSWDILHQPLLRERPTKVQLPKLHLKYQLDLVATLSQLGLQGLFQAPDLRGISDESLVVSSVQHQSTLELSEAGVEAAAATSTAMSRMSLSFSVNRPFLFFILEDTTSLPLFVGSVRNPNPGAQPERKEQQDSPDSRYPFWNQKAFPRGDKPFYPDLKLAPPSEEEDYPQPSGPK", "length": 487, "header": "tr|A0A287AJI4-1|A0A287AJI4_PIG Isoform 1 of Serpin family F member 2 OS=Sus scrofa OX=9823 GN=SERPINF2 PE=1 SV=2 CANONICAL=A0A287AJI4-1" }, "locus": { "chromosome": "12", "start_pos": 47941581, "end_pos": 47936044, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051082.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051082.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044176.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044176.2" } ] } }, { "isoform_ac": "A0A287B9B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI4/entry#A0A287B9B3-1", "sequence": { "sequence": "MPWWERGFWPQHQCLTGCAGQCLPEEKALGTGLAESKGPGGRGGLGWAAGARAERGEHPSGARGTSCAAARSPQRNMALLSGLLVLSLFCLHVLPPVSAMDPLGLQLMIGQGQEKLSPLSLLELDNQEHGGHTALNEAPGECKGTPTPEQTRRLAQAMMAFTRDLFSLVARSSTRPNLVLSPLSVALALSHLALGAQNQTLQRLQQVLHADSGPCLPYLLSRLCQDLGPGAFRLAARMYLQKGFPIKEDFLEQSEELFGAKPMSLTGRKGDDLANINQWVKEATEGKIEDFLSDLPEDTVLLLLNAIHFQGFWRSKFDPNLTQRDTFHLDEQFTVPVDMMQARMYPLRWFLLEQPEIQVAYFPFKNNMSFVVMVPIHFEWNVSQVLANLSWDILHQPLLRERPTKVQLPKLHLKYQLDLVATLSQLGLQGLFQAPDLRGISDESLVVSSVQHQSTLELSEAGVEAAAATSTAMSRMSLSFSVNRPFLFFILEDTTSLPLFVGSVRNPNPGAQPERKEQQDSPDSRYPFWNQKAFPRGDKPFYPDLKLAPPSEEEDYPQPSGPK", "length": 563, "header": "tr|A0A287B9B3-1|A0A287AJI4_PIG Computationally mapped isoform of Serpin family F member 2 OS=Sus scrofa OX=9823 GN=SERPINF2 PE=1 SV=1 CANONICAL=A0A287AJI4-1" }, "locus": { "chromosome": "12", "start_pos": 47941581, "end_pos": 47934459, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062549.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062549.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053075.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053075.1" } ] } }, { "isoform_ac": "A0A5G2QN21-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI4/entry#A0A5G2QN21-1", "sequence": { "sequence": "MPWWERGFWPQHQCLTGCAGQCLPEEKALGTGLAESKGPGGRGGLGWAAGARAERGEHPSGARGTSCAAARSPQSPVRCSSSAPSFLQLMIGQGQEKLSPLSLLELDNQEHGGHTALNEAPGECKGTPTPEQTRRLAQAMMAFTRDLFSLVARSSTRPNLVLSPLSVALALSHLALGAQNQTLQRLQQVLHADSGPCLPYLLSRLCQDLGPGAFRLAARMYLQKGFPIKEDFLEQSEELFGAKPMSLTGRKGDDLANINQWVKEATEGKIEDFLSDLPEDTVLLLLNAIHFQGFWRSKFDPNLTQRDTFHLDEQFTVPVDMMQARMYPLRWFLLEQPEIQVAYFPFKNNMSFVVMVPIHFEWNVSQVLANLSWDILHQPLLRERPTKVQLPKLHLKYQLDLVATLSQLGLQGLFQAPDLRGISDESLVVSSVQHQSTLELSEAGVEAAAATSTAMSRMSLSFSVNRPFLFFILEDTTSLPLFVGSVRNPNPGAQPERKEQQDSPDSRYPFWNQKAFPRGDKPFYPDLKLAPPSEEEDYPQPSGPK", "length": 545, "header": "tr|A0A5G2QN21-1|A0A287AJI4_PIG Computationally mapped isoform of Serpin family F member 2 OS=Sus scrofa OX=9823 GN=SERPINF2 PE=1 SV=1 CANONICAL=A0A287AJI4-1" }, "locus": { "chromosome": "12", "start_pos": 47941581, "end_pos": 47934459, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078844.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078844.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066287.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066287.1" } ] } }, { "isoform_ac": "A0A5G2QSG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI4/entry#A0A5G2QSG7-1", "sequence": { "sequence": "MRLRSLASISGLGIPRSCGCGCGRQLYPVRCSSSAPSFLQLMIGQGQEKLSPLSLLELDNQEHGGHTALNEAPGECKGTPTPEQTRRLAQAMMAFTRDLFSLVARSSTRPNLVLSPLSVALALSHLALGAQNQTLQRLQQVLHADSGPCLPYLLSRLCQDLGPGAFRLAARMYLQKGFPIKEDFLEQSEELFGAKPMSLTGRKGDDLANINQWVKEATEGKIEDFLSDLPEDTVLLLLNAIHFQGFWRSKFDPNLTQRDTFHLDEQFTVPVDMMQARMYPLRWFLLEQPEIQVAYFPFKNNMSFVVMVPIHFEWNVSQVLANLSWDILHQPLLRERPTKVQLPKLHLKYQLDLVATLSQLGLQGLFQAPDLRGISDESLVVSSVQHQSTLELSEAGVEAAAATSTAMSRMSLSFSVNRPFLFFILEDTTSLPLFVGSVRNPNPGAQPERKEQQDSPDSRYPFWNQKAFPRGDKPFYPDLKLAPPSEEEDYPQPSGPK", "length": 497, "header": "tr|A0A5G2QSG7-1|A0A287AJI4_PIG Computationally mapped isoform of Serpin family F member 2 OS=Sus scrofa OX=9823 GN=SERPINF2 PE=1 SV=2 CANONICAL=A0A287AJI4-1" }, "locus": { "chromosome": "12", "start_pos": 47941581, "end_pos": 47935584, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074671.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074671.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067762.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067762.2" } ] } }, { "isoform_ac": "A0A5G2R885-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI4/entry#A0A5G2R885-1", "sequence": { "sequence": "MALLSGLLVLSLFCLHVLPPVSAMDPLGLQLMIGQGQEKLSPLSLLELDNQVQAGAQNQTLQRLQQVLHADSGPCLPYLLSRLCQDLGPGAFRLAARMYLQKGFPIKEDFLEQSEELFGAKPMSLTGRKGDDLANINQWVKEATEGKIEDFLSDLPEDTVLLLLNAIHFQGFWRSKFDPNLTQRDTFHLDEQFTVPVDMMQARMYPLRWFLLEQPEIQVAYFPFKNNMSFVVMVPIHFEWNVSQVLANLSWDILHQPLLRERPTKVQLPKLHLKYQLDLVATLSQLGLQGLFQAPDLRGISDESLVVSSVQHQSTLELSEAGVEAAAATSTAMSRMSLSFSVNRPFLFFILEDTTSLPLFVGSVRNPNPGAQPERKEQQDSPDSRYPFWNQKAFPRGDKPFYPDLKLAPPSEEEDYPQPSGPK", "length": 423, "header": "tr|A0A5G2R885-1|A0A287AJI4_PIG Computationally mapped isoform of Serpin family F member 2 OS=Sus scrofa OX=9823 GN=SERPINF2 PE=1 SV=1 CANONICAL=A0A287AJI4-1" }, "locus": { "chromosome": "12", "start_pos": 47941581, "end_pos": 47936044, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071722.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071722.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070332.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070332.1" } ] } }, { "isoform_ac": "A0A5G2RFF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI4/entry#A0A5G2RFF8-1", "sequence": { "sequence": "MALLSGLLVLSLFCLHVLMIGQGQEKLSPLSLLELDNQEHGGHTALNEAPGECKGTPTPEQTRRLAQAMMAFTRDLFSLVARSSTRPNLVLSPLSVALALSHLALGAQNQTLQRLQQVLHADSGPCLPYLLSRLCQDLGPGAFRLAARMYLQKGFPIKEDFLEQSEELFGAKPMSLTGRKGDDLANINQWVKEATEGKIEDFLSDLPEDTVLLLLNAIHFQGFWRSKFDPNLTQRDTFHLDEQFTVPVDMMQARMYPLRWFLLEQPEIQVAYFPFKNNMSFVVMVPIHFEWNVSQVLANLSWDILHQPLLRERPTKVQLPKLHLKYQLDLVATLSQLGLQGLFQAPDLRGISDESLVVSSVQHQSTLELSEAGVEAAAATSTAMSRMSLSFSVNRPFLFFILEDTTSLPLFVGSVRNPNPGAQPERKEQQDSPDSRYPFWNQKAFPRGDKPFYPDLKLAPPSEEEDYPQPSGPK", "length": 474, "header": "tr|A0A5G2RFF8-1|A0A287AJI4_PIG Computationally mapped isoform of Serpin family F member 2 OS=Sus scrofa OX=9823 GN=SERPINF2 PE=1 SV=1 CANONICAL=A0A287AJI4-1" }, "locus": { "chromosome": "12", "start_pos": 47941581, "end_pos": 47936044, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091596.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091596.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069749.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069749.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN21" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525254", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525254", "resource": "KEGG Pathway" }, { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" }, { "id": "R-SSC-75205", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75205", "resource": "Reactome", "description": "Dissolution of Fibrin Clot" } 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"categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A074", "url": "https://www.uniprot.org/uniprotkb/A0A287A074", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A074-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A074-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADX0", "url": "https://www.uniprot.org/uniprotkb/A0A287ADX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADX0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AGD8", "url": "https://www.uniprot.org/uniprotkb/A0A287AGD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AGD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGD8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQA8", "url": "https://www.uniprot.org/uniprotkb/A0A287AQA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQA8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BG12", "url": "https://www.uniprot.org/uniprotkb/A0A287BG12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BG12-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BG12-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHD9", "url": "https://www.uniprot.org/uniprotkb/A0A287BHD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHV1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHV1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN23", "url": "https://www.uniprot.org/uniprotkb/A0A287BN23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN23-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S575", "url": "https://www.uniprot.org/uniprotkb/F1S575", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S575-1", "url": "https://www.uniprot.org/uniprotkb/F1S575-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LUE4", "url": "https://www.uniprot.org/uniprotkb/I3LUE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LUE4-1", "url": "https://www.uniprot.org/uniprotkb/I3LUE4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDVCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYMTNSKIIHFEIKDRFAFFAGPWLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVHGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGNCECFGHSNRCSYIDLLNTVICVSCKHNTRGQHCELCRLGYFRNASAELDDENVCIECYCNPLGSVHDRCNGSGFCECKTGTTGPKCDECLPGNSWHYGCQPNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPRGSPSLLLLAALLGITSPLGI", "length": 539, "header": "tr|A0A287AGD8-1|A0A287AGD8_PIG Isoform 1 of Netrin-G1 OS=Sus scrofa OX=9823 GN=NTNG1 PE=1 SV=2 CANONICAL=A0A287AGD8-1" }, "isoforms": [ { "isoform_ac": "A0A287A074-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGD8/entry#A0A287A074-1", "sequence": { "sequence": "MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDVCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYMTNSKIIHFEIKDRFAFFAGPWLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVHGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGNCECFGHSNRCSYIDLLNTVICVSCKHNTRGQHCELCRLGYFRNASAELDDENVCIECYCNPLGSVHDRCNGSGFCECKTGTTGPKCDECLPGNSWHYGCQPNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPRGSPSLLLLLLLLLLLAALLGITSPLGI", "length": 546, "header": "tr|A0A287A074-1|A0A287AGD8_PIG Computationally mapped isoform of Netrin-G1 OS=Sus scrofa OX=9823 GN=NTNG1 PE=1 SV=1 CANONICAL=A0A287AGD8-1" }, "locus": { "chromosome": "4", "start_pos": 112605906, "end_pos": 112288594, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035789.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035789.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037296.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037296.1" } ] } }, { "isoform_ac": "A0A287ADX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGD8/entry#A0A287ADX0-1", "sequence": { "sequence": "MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDVCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYMTNSKIIHFEIKDRFAFFAGPWLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVHGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGIAPKLALSTVSSVQVANHKRANVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPRGSPSLLLLLLLLLLLAALLGITSPLGI", "length": 465, "header": "tr|A0A287ADX0-1|A0A287AGD8_PIG Computationally mapped isoform of Netrin-G1 OS=Sus scrofa OX=9823 GN=NTNG1 PE=1 SV=1 CANONICAL=A0A287AGD8-1" }, "locus": { "chromosome": "4", "start_pos": 112605906, "end_pos": 112288594, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060764.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060764.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042006.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042006.1" } ] } }, { "isoform_ac": "A0A287AGD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGD8/entry#A0A287AGD8-1", "sequence": { "sequence": "MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDVCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYMTNSKIIHFEIKDRFAFFAGPWLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVHGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGNCECFGHSNRCSYIDLLNTVICVSCKHNTRGQHCELCRLGYFRNASAELDDENVCIECYCNPLGSVHDRCNGSGFCECKTGTTGPKCDECLPGNSWHYGCQPNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPRGSPSLLLLAALLGITSPLGI", "length": 539, "header": "tr|A0A287AGD8-1|A0A287AGD8_PIG Isoform 1 of Netrin-G1 OS=Sus scrofa OX=9823 GN=NTNG1 PE=1 SV=2 CANONICAL=A0A287AGD8-1" }, "locus": { "chromosome": "4", "start_pos": 112605906, "end_pos": 112288594, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044183.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044183.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042907.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042907.3" } ] } }, { "isoform_ac": "A0A287AQA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGD8/entry#A0A287AQA8-1", "sequence": { "sequence": "MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDVCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYMTNSKIIHFEIKDRFAFFAGPWLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVHGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTLLFLMCSLSTVSSVQVANHKRANVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPRGSPSLLLLLLLLLLLAALLGITSPLGI", "length": 457, "header": "tr|A0A287AQA8-1|A0A287AQA8_PIG Computationally mapped isoform of Netrin G1 OS=Sus scrofa OX=9823 GN=NTNG1 PE=1 SV=3 CANONICAL=A0A287AGD8-1" }, "locus": { "chromosome": "4", "start_pos": 112605906, "end_pos": 112288594, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033143.4", "url": "https://www.ensembl.org/id/ENSSSCT00000033143.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046063.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046063.3" } ] } }, { "isoform_ac": "A0A287BG12-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGD8/entry#A0A287BG12-1", "sequence": { "sequence": "MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDVCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYMTNSKIIHFEIKDRFAFFAGPWLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVHGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPRGSPSLLLLLLLLLLLAALLGITSPLGI", "length": 445, "header": "tr|A0A287BG12-1|A0A287BG12_PIG Computationally mapped isoform of Netrin G1 OS=Sus scrofa OX=9823 GN=NTNG1 PE=1 SV=1 CANONICAL=A0A287AGD8-1" }, "locus": { "chromosome": "4", "start_pos": 112605906, "end_pos": 112288594, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064513.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064513.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055068.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055068.1" } ] } }, { "isoform_ac": "A0A287BHD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGD8/entry#A0A287BHD9-1", "sequence": { "sequence": "MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDVCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYMTNSKIIHFEIKDRFAFFAGPWLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVHGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGNPPKFNRIWPNISSLEVSNPKQVAPKLALSTVSSVQVANHKRANVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPRGSPSLLLLLLLLLLLAALLGITSPLGI", "length": 487, "header": "tr|A0A287BHD9-1|A0A287BHD9_PIG Computationally mapped isoform of Netrin G1 OS=Sus scrofa OX=9823 GN=NTNG1 PE=1 SV=1 CANONICAL=A0A287AGD8-1" }, "locus": { "chromosome": "4", "start_pos": 112605906, "end_pos": 112288594, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037350.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037350.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055775.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055775.1" } ] } }, { "isoform_ac": "A0A287BHV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGD8/entry#A0A287BHV1-1", "sequence": { "sequence": "MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDVCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYMTNSKIIHFEIKDRFAFFAGPWLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVHGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTSLSTVSSVQVANHKRANVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPRGSPSLLLLLLLLLLLAALLGITSPLGI", "length": 451, "header": "tr|A0A287BHV1-1|A0A287BHV1_PIG Computationally mapped isoform of Netrin G1 OS=Sus scrofa OX=9823 GN=NTNG1 PE=1 SV=3 CANONICAL=A0A287AGD8-1" }, "locus": { "chromosome": "4", "start_pos": 112605906, "end_pos": 112288594, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062276.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062276.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056175.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056175.3" } ] } }, { "isoform_ac": "A0A287BN23-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGD8/entry#A0A287BN23-1", "sequence": { "sequence": "MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDVCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYMTNSKIIHFEIKDRFAFFAGPWLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVHGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGNPPKFNRIWPNISSLEVSNPKQVAPKLALSTVSSVQVANHKRDCECFGHSNRCSYIDLLNTVICVSCKHNTRGQHCELCRLGYFRNASAELDDENVCIECYCNPLGSVHDRCNGSGFCECKTGTTGPKCDECLPGNSWHYGCQPNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPRGSPSLLLLLLLLLLLAALLGITSPLGI", "length": 588, "header": "tr|A0A287BN23-1|A0A287AGD8_PIG Computationally mapped isoform of Netrin-G1 OS=Sus scrofa OX=9823 GN=NTNG1 PE=1 SV=1 CANONICAL=A0A287AGD8-1" }, "locus": { "chromosome": "4", "start_pos": 112605906, "end_pos": 112288594, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044036.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044036.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057481.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057481.1" } ] } }, { "isoform_ac": "F1S575-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGD8/entry#F1S575-1", "sequence": { "sequence": "MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDVCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYMTNSKIIHFEIKDRFAFFAGPWLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVHGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGNPPKFNRIWPNISSLEVSNPKQANVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPRGSPSLLLLLLLLLLLAALLGITSPLGI", "length": 467, "header": "tr|F1S575-1|A0A287AGD8_PIG Computationally mapped isoform of Netrin-G1 OS=Sus scrofa OX=9823 GN=NTNG1 PE=1 SV=3 CANONICAL=A0A287AGD8-1" }, "locus": { "chromosome": "4", "start_pos": 112605906, "end_pos": 112288594, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007505.3", "url": "https://www.ensembl.org/id/ENSSSCT00000007505.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007307.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007307.3" } ] } }, { "isoform_ac": "I3LUE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGD8/entry#I3LUE4-1", "sequence": { "sequence": "MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDVCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYMTNSKIIHFEIKDRFAFFAGPWLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVHGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGKCYCNPLGSVHDRCNGSGFCECKTGTTGPKCDECLPGNSWHYGCQPNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPRGSPSLLLLLLLLLLLAALLGITSPLGI", "length": 490, "header": "tr|I3LUE4-1|A0A287AGD8_PIG Computationally mapped isoform of Netrin-G1 OS=Sus scrofa OX=9823 GN=NTNG1 PE=1 SV=2 CANONICAL=A0A287AGD8-1" }, "locus": { "chromosome": "4", "start_pos": 112605906, "end_pos": 112288594, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022367.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022367.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027743.2", "url": "https://www.ensembl.org/id/ENSSSCP00000027743.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LUE4", "url": "https://www.uniprot.org/uniprotkb/I3LUE4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152257", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152257", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZNR9-1", "protein_name": "Netrin-G1", "gene_name": "Ntng1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"length": 1783, "header": "tr|A0A287AG90-1|A0A287AG90_PIG Isoform 1 of Signal induced proliferation associated 1 like 1 OS=Sus scrofa OX=9823 GN=SIPA1L1 PE=4 SV=2 CANONICAL=A0A287AG90-1" }, "isoforms": [ { "isoform_ac": "A0A287AG90-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90/entry#A0A287AG90-1", "sequence": { "sequence": "MTSLKRSQTERPVATERASVVGTDGTPKVHTDDFYMRRFRSQNGSLGSSVMAPVGPPRSEGSHHITSTPGVPKMGVRARIADWPPRKENVKESSRSSQEIETSSCLESLSSKSSPVSQGSSVSLNSSDSAMLKSIQNTLKNKTRPSENMDSRFLMPEAYPSSPRKALRRIRQRSNSDITISELDVDSFDECISPTYKPGPSLHREYGSTSSIDKQGTSGESFFDLLKGYKDDKSDRGPTPTKLSDFLIAGGGKGSGFSLDVIDGPISQRENLRLFKEREKPLKRRSKSETGDSSIFRKLRNAKGEELGKSSDLEDNRSEDSVRPWTCPKCFAHYDVQSILFDLNEAIVNRHNVIKRRNTTTGASAAAVASLVSGPLSHSASFSSPMGSTEDLNSKGSLSMDQGDDKSNELVMSCPYFRNEIGGEGERKISLSKSNSGSFSGCESASFESTLSSHCTNAGVAVLEVPKENLVLHLDRVKRYIVEHVDLGAYYYRKFFYQKEHWNYFGADENLGPVAVSIRREKPEETKENGSPYNYRIIFRTSELMTLRGSVLEDAVPSTAKHSTARGLPLKEVLEHVIPELNVQCLRLAFNTPKVTEQLMKLDEQGLNYQQKVGIMYCKAGQSTEEEMYNNESAGPAFEEFLQLLGERVRLKGFEKYRAQLDTKTDSTGTHSLYTTYKDYEIMFHVSTMLPYTPNNKQQLLRKRHIGNDIVTIVFQEPGAQPFSPKNIRSHFQHVFVIVRVHNPCTDSVCYSVAVTRSRDVPSFGPPIPKGVTFPKSNVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAEKNVTNTPIDPSGKFPFISLASKKKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEIDCLLGVSNEFIVLIEQETKSVVFNCSCRDVIGWTSTDTSLKIFYERGECVSVESFLNNEEIKEIVKRLQFVSKGCESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHEQMIDLLRTSVTVKVVIIPPHDDCTPRRSCSETYRMPVMEYKMNEGVSYEFKFPFRNNNKWQRNANKGAHSPQVPSQVQSPMTSRLNAGKGDGKMPPPERAANIPRSISSDGRPLERRLSPGSDIYVTVSSMALARSQPCRSSPSNLSSSSETGSGGGTYRQKSMPEGFGISRRSPASIDRQNTQSDIGGSGKSTPSWQRSEDSIADQMEPTCHLPAVSKVLPAFRESPSGRLIRQDPVVHLSPNKQGHSDSHYSSHSSSNTLSSNASSAHSDEKWYDGDRAESELNGYNYLQGTSADSGIDTTSYGPSHGSTASLGAATSSPRSGPGKEKVAPLWHSSSEVISLADRTLESESHGMDRKTESSLSLDIHTKSQAGSNPLTRENSTFSINDAASHTSTMSSRHSASPVVFTSARSSPKEELHPATSSQLAPSFSSAASSSGPRTFYPRQGATSKYLIGWKKPEGTINSVGFMDTRKRHQSDGNEIAHTRLRASTRDLRASPKPTSKSTIEEDLKKLIDLESPTPESQKNFKFHALSSPQSPFPTTPTSRRALHRTLSDESIYSGQREHFFTSRASLLDQALPNDVLFSSTYPSLPKSLPLRRPSYTLGMKSLHGEFSASDSSLTDVQESRRPPMPDPGLMPLPDTAADLDWSNLVDAAKAYEVQRASFFAASDENHRPLSAASNSDQLEDQALAQMKSYSSSKDSSPTLASKVDQLEGMLKMLREDLKKEKEDKAHLQAEVQHLREDNLRLQEESQNASDKLKKFTEWVFNTIDMS", "length": 1783, "header": "tr|A0A287AG90-1|A0A287AG90_PIG Isoform 1 of Signal induced proliferation associated 1 like 1 OS=Sus scrofa OX=9823 GN=SIPA1L1 PE=4 SV=2 CANONICAL=A0A287AG90-1" }, "locus": { "chromosome": "7", "start_pos": 95166918, "end_pos": 95023123, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037538.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037538.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042917.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042917.2" } ] } }, { "isoform_ac": "A0A8W4FC17-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90/entry#A0A8W4FC17-1", "sequence": { "sequence": "MTSLKRSQTERPVATERASVVGTDGTPKVHTDDFYMRRFRSQNGSLGSSVMAPVGPPRSEGSHHITSTPGVPKMGVRARIADWPPRKENVKESSRSSQEIETSSCLESLSSKSSPVSQGSSVSLNSSDSAMLKSIQNTLKNKTRPSENMDSRFLMPEAYPSSPRKALRRIRQRSNSDITISELDVDSFDECISPTYKPGPSLHREYGSTSSIDKQGTSGESFFDLLKGYKDDKSDRGPTPTKLSDFLIAGGGKGSGFSLDVIDGPISQRENLRLFKEREKPLKRRSKSETGDSSIFRKLRNAKGEELGKSSDLEDNRSEDSVRPWTCPKCFAHYDVQSILFDLNEAIVNRHNVIKRRNTTTGASAAAVASLVSGPLSHSASFSSPMGSTEDLNSKGSLSMDQGDDKSNELVMSCPYFRNEIGGEGERKISLSKSNSGSFSGCESASFESTLSSHCTNAGVAVLEVPKENLVLHLDRVKRYIVEHVDLGAYYYRKFFYQKEHWNYFGADENLGPVAVSIRREKPEETKENGSPYNYRIIFRTSELMTLRGSVLEDAVPSTAKHSTARGLPLKEVLEHVIPELNVQCLRLAFNTPKVTEQLMKLDEQGLNYQQKVGIMYCKAGQSTEEEMYNNESAGPAFEEFLQLLGERVRLKGFEKYRAQLDTKTDSTGTHSLYTTYKDYEIMFHVSTMLPYTPNNKQQLLRKRHIGNDIVTIVFQEPGAQPFSPKNIRSHFQHVFVIVRVHNPCTDSVCYSVAVTRSRDVPSFGPPIPKGVTFPKSNVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAEKNVTNTPIDPSGKFPFISLASKKKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEIDCLLGVSNEFIVLIEQETKSVVFNCSCRDVIGWTSTDTSLKIFYERGECVSVESFLNNEEIKEIVKRLQFVSKGCESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHEQMIDLLRTSVTVKVVIIPPHDDCTPRRSCSETYRMPVMEYKMNEGVSYEFKFPFRNNNKWQRNANKGAHSPQVPSQVQSPMTSRLNAGKGDGKMPPPERAANIPRSISSDGRPLERRLSPGSDIYVTVSSMALARSQPCRSSPSNLSSSSETGSGGGTYRQKSMPEGFGISRRSPASIDRQNTQSDIGGSGKSTPSWQRSEDSIADQMAYSYRGPQDFNSFVLEQHEYTEPTCHLPAVSKVLPAFRESPSGRLIRQDPVVHLSPNKQGHSDSHYSSHSSSNTLSSNASSAHSDEKWYDGDRAESELNGYNYLQGTSADSGIDTTSYGPSHGSTASLGAATSSPRSGPGKEKVAPLWHSSSEVISLADRTLESESHGMDRKTESSLSLDIHTKSQAGSNPLTRENSTFSINDAASHTSTMSSRHSASPVVFTSARSSPKEELHPATSSQLAPSFSSAASSSGPRTFYPRQGATSKYLIGWKKPEGTINSVGFMDTRKRHQSDGNEIAHTRLRASTRDLRASPKPTSKSTIEEDLKKLIDLESPTPESQKNFKFHALSSPQSPFPTTPTSRRALHRTLSDESIYSGQREHFFTSRASLLDQALPNDVLFSSTYPSLPKSLPLRRPSYTLGMKSLHGEFSASDSSLTDVQESRRPPMPDPGLMPLPDTAADLDWSNLVDAAKAYEVQRASFFAASDENHRPLSAASNSDQLEDQALAQMKSYSSSKDSSPTLASKVDQLEGMLKMLREDLKKEKEDKAHLQAEVQHLREDNLRLQEESQNASDKLKKFTEWVFNTIDMS", "length": 1804, "header": "tr|A0A8W4FC17-1|A0A287AG90_PIG Computationally mapped isoform of Signal induced proliferation associated 1 like 1 OS=Sus scrofa OX=9823 GN=SIPA1L1 PE=4 SV=1 CANONICAL=A0A287AG90-1" }, "locus": { "chromosome": "7", "start_pos": 95166918, "end_pos": 95023123, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096965.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096965.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076808.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076808.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1530, "start_aa": "Thr", "end_pos": 1530, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1530", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 239, "start_aa": "Thr", "end_pos": 239, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr239", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 756, "start_aa": "Thr", "end_pos": 756, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr756", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FC17", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC17" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG90", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90" } ], "pmid": "" }, { "name": "ephrin receptor binding", "id": "GO:0046875", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046875", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG90", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "regulation of small GTPase mediated signal transduction", "id": "GO:0051056", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051056", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG90", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90" } ], "pmid": "" }, { "name": "regulation of axonogenesis", "id": "GO:0050770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050770", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG90", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90" } ], "pmid": "" }, { "name": "ephrin receptor signaling pathway", "id": "GO:0048013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048013", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG90", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90" } ], "pmid": "" }, { "name": "regulation of synaptic plasticity", "id": "GO:0048167", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048167", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG90", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90" } ], "pmid": "" }, { "name": "actin cytoskeleton organization", "id": "GO:0030036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030036", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG90", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90" } ], "pmid": "" }, { "name": "regulation of dendritic spine morphogenesis", "id": "GO:0061001", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061001", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG90", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG90", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG90", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1153, "end_pos": 1155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1273, "end_pos": 1275, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1391, "end_pos": 1393, "annotation": "n_glycosylation_sequon" }, { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1764, "end_pos": 1766, "annotation": "n_glycosylation_sequon" }, { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" }, { "start_pos": 358, "end_pos": 360, "annotation": "n_glycosylation_sequon" }, { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" }, { "start_pos": 529, "end_pos": 531, "annotation": "n_glycosylation_sequon" }, { "start_pos": 631, "end_pos": 633, "annotation": "n_glycosylation_sequon" }, { "start_pos": 820, "end_pos": 822, "annotation": "n_glycosylation_sequon" }, { "start_pos": 898, "end_pos": 900, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AG90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 953, "end_pos": 1017, "start_aa": "Glu", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AG90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AG90" }, { "id": "PS50085", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50085" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rap-GAP", "eco_id": "ECO_0000259", "start_pos": 599, "end_pos": 816, 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR001212", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517950", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517950", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AEIYHSG", "url": "https://omabrowser.org/oma/group/AEIYHSG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287ANT6", "url": "https://www.orthodb.org/?gene=A0A287ANT6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12411", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12411", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00112", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00112", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005665215", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665215", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ANT6", "url": "https://www.uniprot.org/uniprotkb/A0A287ANT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANT6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VTY5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VTY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1PAK7", "url": "https://www.uniprot.org/uniprotkb/A0A8D1PAK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1PAK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1PAK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1TCS0", "url": "https://www.uniprot.org/uniprotkb/A0A8D1TCS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1TCS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1TCS0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWRCPLGLLLLLLLAGELALGARRGRGRRELAPALHLRGIRDAGGRYCQEQDLCCRGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCQGGRLDGAWWFLRRRGVVSDHCYPFSGHERNEAGPAPRCMMHSRAMGRGKRQATARCPNSYVHANDIYQVTPAYRLGSNEKDIMKELMENGPVQALMEVHEDFFLYQSGIYSHTPVSHGRPERYRRHGTHSVKITGWGEETLPDGRMLKYWTAANSWGPGWGERGHFRIVRGANECDIESFVLGVWGRVGMEDMGHP", "length": 467, "header": "tr|A0A287ANT6-1|A0A287ANT6_PIG Isoform 1 of Tubulointerstitial nephritis antigen like 1 OS=Sus scrofa OX=9823 GN=TINAGL1 PE=1 SV=1 CANONICAL=A0A287ANT6-1" }, "isoforms": [ { "isoform_ac": "A0A287ANT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANT6/entry#A0A287ANT6-1", "sequence": { "sequence": "MWRCPLGLLLLLLLAGELALGARRGRGRRELAPALHLRGIRDAGGRYCQEQDLCCRGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCQGGRLDGAWWFLRRRGVVSDHCYPFSGHERNEAGPAPRCMMHSRAMGRGKRQATARCPNSYVHANDIYQVTPAYRLGSNEKDIMKELMENGPVQALMEVHEDFFLYQSGIYSHTPVSHGRPERYRRHGTHSVKITGWGEETLPDGRMLKYWTAANSWGPGWGERGHFRIVRGANECDIESFVLGVWGRVGMEDMGHP", "length": 467, "header": "tr|A0A287ANT6-1|A0A287ANT6_PIG Isoform 1 of Tubulointerstitial nephritis antigen like 1 OS=Sus scrofa OX=9823 GN=TINAGL1 PE=1 SV=1 CANONICAL=A0A287ANT6-1" }, "locus": { "chromosome": "6", "start_pos": 88105745, "end_pos": 88096294, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050373.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050373.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045562.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045562.1" } ] } }, { "isoform_ac": "A0A4X1VTY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANT6/entry#A0A4X1VTY5-1", "sequence": { "sequence": "MWRCPLGLLLLLLLAGELALGARRGRGRRELAPALHLRGIRDAGGRYCQEQDLCCRGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHRGRIYPVLGTYWDNCNRWWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCQGGRLDGAWWFLRRRGVVSDHCYPFSGHERNEAGPAPRCMMHSRAMGRGKRQATARCPNSYVHANDIYQVTPAYRLGSNEKDIMKELMENGPVQALMEVHEDFFLYQSGIYSHTPVSHGRPERYRRHGTHSVKITGWGEETLPDGRMLKYWTAANSWGPGWGERGHFRIVRGANECDIESFVLGVWGRVGMEDMGHP", "length": 436, "header": "tr|A0A4X1VTY5-1|A0A287ANT6_PIG Computationally mapped isoform of Tubulointerstitial nephritis antigen like 1 OS=Sus scrofa OX=9823 GN=TINAGL1 PE=1 SV=1 CANONICAL=A0A287ANT6-1" }, "locus": { "chromosome": "6", "start_pos": 88105745, "end_pos": 88096294, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066544.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066544.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067558.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067558.1" } ] } }, { "isoform_ac": "A0A8D1PAK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANT6/entry#A0A8D1PAK7-1", "sequence": { "sequence": "MWRCPLGLLLLLLLAGELALGARRGRGRRELAPALHLRGIRDAGGRYCQEQDLCCRGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHVGKEGQGLSPLTAPLPPPPAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCQGGRLDGAWWFLRRRGVVSDHCYPFSGHERNEAGPAPRCMMHSRAMGRGKRQATARCPNSYVHANDIYQVTPAYRLGSNEKDIMKELMENGPVQALMEVHEDFFLYQSGIYSHTPVSHGRPERYRRHGTHSVKITGWGEETLPDGRMLKYWTAANSWGPGWGERGHFRIVRGANECDIESFVLGVWGRVGMEDMGHP", "length": 445, "header": "tr|A0A8D1PAK7-1|A0A287ANT6_PIG Computationally mapped isoform of Tubulointerstitial nephritis antigen like 1 OS=Sus scrofa OX=9823 GN=TINAGL1 PE=1 SV=1 CANONICAL=A0A287ANT6-1" }, "locus": { "chromosome": "6", "start_pos": 88105745, "end_pos": 88096294, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075608.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075608.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063079.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063079.1" } ] } }, { "isoform_ac": "A0A8D1TCS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANT6/entry#A0A8D1TCS0-1", "sequence": { "sequence": "MWRCPLGLLLLLLLAGELALGARRGRGRRELAPALHLRGIRDAGGRYCQEQDLCCRGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHPAQSRDLTASSLPCPLGPEAQGPGGKKDVADQKTVLGPGEVLPRAFEASEKWPNLIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCQGGRLDGAWWFLRRRGVVSDHCYPFSGHERNEAGPAPRCMMHSRAMGRGKRQATARCPNSYVHANDIYQVTPAYRLGSNEKDIMKELMENGPVQALMEVHEDFFLYQSGIYSHTPVSHGRPERYRRHGTHSVKITGWGEETLPDGRMLKYWTAANSWGPGWGERGHFRIVRGANECDIESFVLGVWGRVGMEDMGHP", "length": 500, "header": "tr|A0A8D1TCS0-1|A0A287ANT6_PIG Computationally mapped isoform of Tubulointerstitial nephritis antigen like 1 OS=Sus scrofa OX=9823 GN=TINAGL1 PE=1 SV=1 CANONICAL=A0A287ANT6-1" }, "locus": { "chromosome": "6", "start_pos": 88105745, "end_pos": 88096294, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003995.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003995.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003904.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003904.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 341, "start_aa": "Thr", "end_pos": 341, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr341", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VTY5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTY5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517950", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517950", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YZT4-1", "protein_name": "Tubulointerstitial nephritis antigen like 1", "gene_name": "TINAGL1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MANTALVPWVLLWLLAAVGSAARARTRRELSPGLYEHGVFDAGGSYCQRGDVCCRGRDDGCTVPYLDTICYCDLFCNRTVSDCCPDFWEYCLGIPAPFPKAPGCARSGRTYPSGATYRDNCNLCTCSPGGQWQCEEHACLMDGDLIDAVNRGNYGWRAANYSQFWGMTLEDGMRYRLGTFRPPPTVMNMNEMHMAMDSNEVLPRHFDAATKWPGMIHEPLDQGNCAGSWAFSTAAVASDRISIHSMGHMTPSLSPQNLLSCDTRNQRGCSGGRLDGAWWYLRRRGVVTDECYPFTSQDSQPAAQPCMMHSRSTGRGKRQATARCPNPQTHANDIYQSTPAYRLAPSEKEIMKELMENGPVQAILEVHEDFFLYKSGIYRHTAVAEGKGPKHQQHGTHSVKITGWGEEQLPDGQVQKYWTAANSWGRAWGEDGHFRIARGVNECEVESFVVGVWGRVSVEDMPHK", "length": 464 }, "evidence": [ { "id": "A0A287ANT6", "url": "https://omabrowser.org/oma/group/A0A287ANT6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3H1W4-1", "protein_name": "Tubulointerstitial nephritis antigen-like", "gene_name": "Tinagl1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MWGCRLGLLLLLLAGQAALEARRSRWRRELAPGLHLRGIRDAGGRYCQERDMCCRGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHGGRIYPVFGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMINAINRGNYGWQAGNHSAFWGMTLDEGIRYRLGTIRPSSSVMNMNEIYTALGRGEVLPRAFEASEKWPNLIQEPLDQGNCAGSWAFSTAAVASDRVSIHSMGHMTPILSPQNLLSCDTHHQQGCRGGRLDGAWWFLRRRGVVSDNCYPFVGREQNEAGTSSRCMMHSRAMGRGKRQATSRCPNGQVDSNDIYQVTPAYRLGSDEKEIMKELMENGPVQALMEVHEDFFLYQSGIYSHTPISQGRPEQYRRHGTHSVKITGWGEEKLPDGRTIKYWTAANSWGPWWGERGHFRIVRGTNECDIESFVLGVWGRVGMEDMGH", "length": 465 }, "evidence": [ { "id": "A0A287ANT6", "url": "https://omabrowser.org/oma/group/A0A287ANT6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { 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"A0A287AH84-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYB8", "url": "https://www.uniprot.org/uniprotkb/A0A287AYB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYB8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGU4", "url": "https://www.uniprot.org/uniprotkb/A0A287BGU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGU4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U3W0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U3W0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U3W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U3W0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHM7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHM7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVK1", "url": "https://www.uniprot.org/uniprotkb/F1RVK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVK1-1", "url": "https://www.uniprot.org/uniprotkb/F1RVK1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKIFGFGSKKGESPLGSSTSPGREGRNRSNSHPGYHIRDKDLGKIHKAASVGNVARVQQILLLRKNGLNDRDKMNRTALHLACANGHPAVVTLLVERKCQLNLCDNENRTALIKAVQCQEEECASILLEHGADPNLADLSGNTALHYAAFGQNISIAAKLLSYNADIEARNKDDLTPLLLAVRENKQQMVDFLAEKEANTHVVDKIKSNRQLISEYKEEKRPKSPSLNSNLVVDESSEEDSLSRLSDKPGVDDSWPTSDEDFDFDTKPVLKPSLTTLMSASQLPKKITEAKCGIVGPENNTFFEDNNSASENEDVVETFPKPSINVQDFSNSAFPSPESFLKPFKSLTGLGLTKEGETKPETGKKENSTDVIESAPQEPTTHDNLTSVNGARRNNRSDMLSALGLEEDDIESPWDSESISESLPQKFVDHFSGASGQRGKNLLDGEVEDVFYIPSCMSGSRNFKRAKLEDPRNGGIPVAHMDSPEEYPHLKPAVGVKESVPNKTLGMKDLQKSRSDFLAEPDLEMTLEEEQERLDGNENNHSQVCKNPNKLPLLHLQKMPQEPEPSKECGREDLSVYSGLPCVEKCEEMWNKQGKLEWKNNLKRVTEELKQKFGAICEKCKIPLGPEQEPPHDNSRKGADVQETLSTLTKNTLDGEEKDAGVSLSVVFQSFPQQKGPSLENVSPSYSHSGSPRYACQSSSKLYLNENKLNYKSGQPDTEQVFNRYKESFYNGTENKKGRTPVVIFEVKEDQEFDMQMLQSRTQCATNWKSDIGHLSQSGDPKSPFDLWLARSSEMKHMIHIKSDGISAVTNTSKKTKPVQDWFQRSLHTDNCSANNYKSMEPELGNGSSPSNSNRTSKVYLSEELQQDMQRFKNEIGMLQVEEEKKKHRNSVMEVSENRRDAAESGLIQKRENGKTNNQQFPTMENDVFDSSPGIYLKDVKKNENEKWTSETLEITPVFEKADSPTGGLLHMNDDSSLSEIDQDDGRPAKKTSNEENKVKEQINSVDDLDDLTQSSETASEGCELLYSNYKNSMLLIEQLGMECKDSVSLLKIQDAVLSYERLLELKKSHCDVLNGKIKKMENKVSGLQKELSETKEVKSQLEHQKVEWEQELCSLRFTLKQEEEKRRNADMLYEKIREQLRRKEEQYGKEVEMKQQLELTLRALDMELRTVKNNLNQVIEERNDIQKQLSRKQNARILQDGILTNHLSKQKEIEMANKEMNSEVSECREKEENLLRRNHMLQDEIALLKLEIDTIKKQNQEKENKYFEDIEIVKEKNDDLQKTIKLNEETLAKTILQYSGQLNVLTAENTMLKSKLESEKQNKDRLEAEVESYHSRLAAAIQDREQSQTSKRDLELAFQRAKDEWLRLQDKMNFDVANLKDNNEMLSQQLSKTESKFNSLETELHHTKDALREKALVLERVQRDLSQAQGQKKEIEHMYQSEQGKVNKYMGKQESLEERLSQLQSENLLLRQQLDDAQNKVDSKEKTVINIQGQFQDIVKRLQAESERQGLMLEERNKELTNECNHLKERLYQYENEKAEREAVVRQLQQELADTLKKQSMSEASLEVTSRYRANLEDEAQDLKKKLRQITSQLQEAQDRHTEAVKCTEKTQDHVQKLEIENAKLKVTVKKQVGKIEQLQKNLLSTGSSEDEKEQLKKLTELKQSLESSLDQEMKKNDELEKELTGFKELLKMTRRKLNEYENGEFNSPGDLKTNQIEMDIQINLLKHKIDDLTAKLETASSKCLHLDTKNQVLQQELLSMKVMQKKCKKLEKNKSKLEQEVVNLKSHIEMNTVERSQVEQYKREIEERARQELVEKLKEVNLFLQAQAASQENLEQLWENNYASIRSQMELRIKDLESELSKMKSFQEYSDKTELEKYKQLYLEEVKLGKSLANKLNKTNERLAEISAKLLVEKEQNRSLLHTLTTRPVLEPPCARNLNNGLMFNRNLTPRENLVISTSSPRPSNDSIETYLTKMQQELQKNISRELAEAAAEFESGICRTSPLGSTDDLVLKTSQEYVQILKKNYML", "length": 2031, "header": "tr|A0A287AH84-1|A0A287AH84_PIG Isoform 1 of YME1 like 1 ATPase OS=Sus scrofa OX=9823 GN=LOC100516390 PE=4 SV=2 CANONICAL=A0A287AH84-1" }, "isoforms": [ { "isoform_ac": "A0A286ZNB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84/entry#A0A286ZNB1-1", "sequence": { "sequence": "MKKIFGFGSKKGESPLGSSTSPGREGRNRSNSHPGYHIRDKDLGKIHKAASVGNVARVQQILLLRKNGLNDRDKMNRTALHLACANGHPAVVTLLVERKCQLNLCDNENRTALIKAVQCQEEECASILLEHGADPNLADLSGNTALHYAAFGQNISIAAKLLSYNADIEARNKDDLTPLLLAVRENKQQMVDFLAEKEANTHVVDKIKSNRQLISEYKEEKRPKSPSLNSNLVVDESSEEDSLSRLSDKPGVDDSWPTSDEDFDFDTKPVLKPSLTTLMSASQLPKKITEAKCGIVGPENNTFFEDNNSASENEDVVETFPKPSINVQDFSNSAFPSPESFLKPFKSLTGLGLTKEGETKPETGKKENSTDVIESAPQEPTTHDNLTSVNGARRNNRSDMLSALGLEEDDIESPWDSESISESLPQKFVDHFSGASGQRGKNLLDGEVEDSPEEYPHLKPAVGVKESVPNKTLGMKDLQKSRSDFLAEPDLEMTLEEEQERLDGNENNHSQVEEEKKKHRNSVMEVSENRRDAAESGLIQKRENGKTNNQQFPTMENDVFDSSPGIYLKDVKKNENEKWTSETLEITPVFEKADSPTGGLLHMNDDSSLSEIDQDDGRPAKKTSNEENKVKEQINSVDDLDDLTQSSETASEGCELLYSNYKNSMLLIEQLGMECKDSVSLLKIQDAVLSYERLLELKKSHCDVLNGKIKKMENKVSGLQKELSETKEVKSQLEHQKVEWEQELCSLRFTLKQEEEKRRNADMLYEKIREQLRRKEEQYGKEVEMKQQLELTLRALDMELRTVKNNLNQVIEERNDIQKQLSRKQNARILQDGILTNHLSKQKEIEMANKEMNSEVSECREKEENLLRRNHMLQDEIALLKLEIDTIKKQNQEKENKYFEDIEIVKEKNDDLQKTIKLNEETLAKTILQYSGQLNVLTAENTMLKSKLESEKQNKDRLEAEVESYHSRLAAAIQDREQSQTSKRDLELAFQRAKDEWLRLQDKMNFDVANLKDNNEMLSQQLSKTESKFNSLETELHHTKDALREKALVLERVQRDLSQAQGQKKEIEHMYQSEQGKVNKYMGKQESLEERLSQLQSENLLLRQQLDDAQNKVDSKEKTVINIQGQFQDIVKRLQAESERQGLMLEERNKELTNECNHLKERLYQYENEKAEREAVVRQLQQELADTLKKQSMSEASLEVTSRYRANLEDEAQDLKKKLRQITSQLQEAQDRHTEAVKCTEKTQDHVQKLEIENAKLKVTVKKQVGKIEQLQKNLLSTGSSEDEKEQLKKLTELKQSLESSLDQEMKKNDELEKELTGFKELLKMTRRKLNEYENGEFNSPGDLKTNQIEMDIQINLLKHKIDDLTAKLETASSKCLHLDTKNQVLQQELLSMKVMQKKCKKLEKNKSKLEQEVVNLKSHIEMNTVERSQVEQYKREIEERARQELVEKLKEVNLFLQAQAASQENLEQLWENNYASIRSQMELRIKDLESELSKMKSFQEYSDKTELEKYKQLYLEEVKLGKSLANKLNKTNERLAEISAKLLVEKEQNRSLLHTLTTRPVLEPPCARNLNNGLMFNRNLTPRENLVISTSSPRPSNDSIETYLTKMQQELQKNISRELAEAAAEFESGICRTSPLGSTDDLVLKTSQEYVQILKKNYML", "length": 1661, "header": "tr|A0A286ZNB1-1|A0A287AH84_PIG Computationally mapped isoform of YME1 like 1 ATPase OS=Sus scrofa OX=9823 GN=LOC100516390 PE=4 SV=1 CANONICAL=A0A287AH84-1" }, "locus": { "chromosome": "10", "start_pos": 48795578, "end_pos": 48695655, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058596.1", "url": "https://www.ensembl.org/id/ENSSSCT00000058596.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033068.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033068.1" } ] } }, { "isoform_ac": "A0A287AH84-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84/entry#A0A287AH84-1", "sequence": { "sequence": "MKKIFGFGSKKGESPLGSSTSPGREGRNRSNSHPGYHIRDKDLGKIHKAASVGNVARVQQILLLRKNGLNDRDKMNRTALHLACANGHPAVVTLLVERKCQLNLCDNENRTALIKAVQCQEEECASILLEHGADPNLADLSGNTALHYAAFGQNISIAAKLLSYNADIEARNKDDLTPLLLAVRENKQQMVDFLAEKEANTHVVDKIKSNRQLISEYKEEKRPKSPSLNSNLVVDESSEEDSLSRLSDKPGVDDSWPTSDEDFDFDTKPVLKPSLTTLMSASQLPKKITEAKCGIVGPENNTFFEDNNSASENEDVVETFPKPSINVQDFSNSAFPSPESFLKPFKSLTGLGLTKEGETKPETGKKENSTDVIESAPQEPTTHDNLTSVNGARRNNRSDMLSALGLEEDDIESPWDSESISESLPQKFVDHFSGASGQRGKNLLDGEVEDVFYIPSCMSGSRNFKRAKLEDPRNGGIPVAHMDSPEEYPHLKPAVGVKESVPNKTLGMKDLQKSRSDFLAEPDLEMTLEEEQERLDGNENNHSQVCKNPNKLPLLHLQKMPQEPEPSKECGREDLSVYSGLPCVEKCEEMWNKQGKLEWKNNLKRVTEELKQKFGAICEKCKIPLGPEQEPPHDNSRKGADVQETLSTLTKNTLDGEEKDAGVSLSVVFQSFPQQKGPSLENVSPSYSHSGSPRYACQSSSKLYLNENKLNYKSGQPDTEQVFNRYKESFYNGTENKKGRTPVVIFEVKEDQEFDMQMLQSRTQCATNWKSDIGHLSQSGDPKSPFDLWLARSSEMKHMIHIKSDGISAVTNTSKKTKPVQDWFQRSLHTDNCSANNYKSMEPELGNGSSPSNSNRTSKVYLSEELQQDMQRFKNEIGMLQVEEEKKKHRNSVMEVSENRRDAAESGLIQKRENGKTNNQQFPTMENDVFDSSPGIYLKDVKKNENEKWTSETLEITPVFEKADSPTGGLLHMNDDSSLSEIDQDDGRPAKKTSNEENKVKEQINSVDDLDDLTQSSETASEGCELLYSNYKNSMLLIEQLGMECKDSVSLLKIQDAVLSYERLLELKKSHCDVLNGKIKKMENKVSGLQKELSETKEVKSQLEHQKVEWEQELCSLRFTLKQEEEKRRNADMLYEKIREQLRRKEEQYGKEVEMKQQLELTLRALDMELRTVKNNLNQVIEERNDIQKQLSRKQNARILQDGILTNHLSKQKEIEMANKEMNSEVSECREKEENLLRRNHMLQDEIALLKLEIDTIKKQNQEKENKYFEDIEIVKEKNDDLQKTIKLNEETLAKTILQYSGQLNVLTAENTMLKSKLESEKQNKDRLEAEVESYHSRLAAAIQDREQSQTSKRDLELAFQRAKDEWLRLQDKMNFDVANLKDNNEMLSQQLSKTESKFNSLETELHHTKDALREKALVLERVQRDLSQAQGQKKEIEHMYQSEQGKVNKYMGKQESLEERLSQLQSENLLLRQQLDDAQNKVDSKEKTVINIQGQFQDIVKRLQAESERQGLMLEERNKELTNECNHLKERLYQYENEKAEREAVVRQLQQELADTLKKQSMSEASLEVTSRYRANLEDEAQDLKKKLRQITSQLQEAQDRHTEAVKCTEKTQDHVQKLEIENAKLKVTVKKQVGKIEQLQKNLLSTGSSEDEKEQLKKLTELKQSLESSLDQEMKKNDELEKELTGFKELLKMTRRKLNEYENGEFNSPGDLKTNQIEMDIQINLLKHKIDDLTAKLETASSKCLHLDTKNQVLQQELLSMKVMQKKCKKLEKNKSKLEQEVVNLKSHIEMNTVERSQVEQYKREIEERARQELVEKLKEVNLFLQAQAASQENLEQLWENNYASIRSQMELRIKDLESELSKMKSFQEYSDKTELEKYKQLYLEEVKLGKSLANKLNKTNERLAEISAKLLVEKEQNRSLLHTLTTRPVLEPPCARNLNNGLMFNRNLTPRENLVISTSSPRPSNDSIETYLTKMQQELQKNISRELAEAAAEFESGICRTSPLGSTDDLVLKTSQEYVQILKKNYML", "length": 2031, "header": "tr|A0A287AH84-1|A0A287AH84_PIG Isoform 1 of YME1 like 1 ATPase OS=Sus scrofa OX=9823 GN=LOC100516390 PE=4 SV=2 CANONICAL=A0A287AH84-1" }, "locus": { "chromosome": "10", "start_pos": 48795578, "end_pos": 48695655, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062750.2", "url": "https://www.ensembl.org/id/ENSSSCT00000062750.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043243.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043243.2" } ] } }, { "isoform_ac": "A0A287AYB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84/entry#A0A287AYB8-1", "sequence": { "sequence": "MKKIFGFGSKKGESPLGSSTSPGREGRNRSNSHPGYHIRDKDLGKIHKAASVGNVARVQQILLLRKNGLNDRDKMNRTALHLACANGHPAVVTLLVERKCQLNLCDNENRTALIKAVQCQEEECASILLEHGADPNLADLSGNTALHYAAFGQNISIAAKLLSYNADIEARNKDDLTPLLLAVRENKQQMVDFLAEKEANTHVVDKIKSNRQLISEYKEEKRPKSPSLNSNLVVDESSEEDSLSRLSDKPGVDDSWPTSDEDFDFDTKPVLKPSLTTLMSASQLPKKITEAKCGIVGPENNTFFEDNNSASENEDVVETFPKPSINVQDFSNSAFPSPESFLKPFKSLTGLGLTKEGETKPETGKKENSTDVIESAPQEPTTHDNLTSVNGARRNNRSDMLSALGLEEDDIESPWDSESISESLPQKFVDHFSGASGQRGKNLLDGEVEDVFYIPSCMSGSRNFKRAKLEDPRNGGIPVAHMDSPEEYPHLKPAVGVKESVPNKTLGMKDLQKSRSDFLAEPDLEMTLEEEQERLDGNENNHSQVEEEKKKHRNSVMEVSENRRDAAESGLIQKRENGKTNNQQFPTMENDVFDSSPGIYLKDVKKNENEKWTSETLEITPVFEKADSPTGGLLHMNDDSSLSEIDQDDGRPAKKTSNEENKVKEQINSVDDLDDLTQSSETASEGCELLYSNYKNSMLLIEQLGMECKDSVSLLKIQDAVLSYERLLELKKSHCDVLNGKIKKMENKVSGLQKELSETKEVKSQLEHQKVEWEQELCSLRFTLKQEEEKRRNADMLYEKIREQLRRKEEQYGKEVEMKQQLELTLRALDMELRTVKNNLNQVIEERNDIQKQLSRKQNARILQDGILTNHLSKQKEIEMANKEMNSEVSECREKEENLLRRNHMLQDEIALLKLEIDTIKKQNQEKENKYFEDIEIVKEKNDDLQKTIKLNEETLAKTILQYSGQLNVLTAENTMLKSKLESEKQNKDRLEAEVESYHSRLAAAIQDREQSQTSKRDLELAFQRAKDEWLRLQDKMNFDVANLKDNNEMLSQQLSKTESKFNSLETELHHTKDALREKALVLERVQRDLSQAQGQKKEIEHMYQSEQGKVNKYMGKQESLEERLSQLQSENLLLRQQLDDAQNKVDSKEKTVINIQGQFQDIVKRLQAESERQGLMLEERNKELTNECNHLKERLYQYENEKAEREAVVRQLQQELADTLKKQSMSEASLEVTSRYRANLEDEAQDLKKKLRQITSQLQEAQDRHTEAVKCTEKTQDHVQKLEIENAKLKVTVKKQVGKIEQLQKNLLSTGSSEDEKEQLKKLTELKQSLESSLDQEMKKNDELEKELTGFKELLKMTRRKLNEYENGEFNSPGDLKTNQIEMDIQINLLKHKIDDLTAKLETASSKCLHLDTKNQVLQQELLSMKVMQKKCKKLEKNKSKLEQEVVNLKSHIEMNTVERSQVEQYKREIEERARQELVEKLKEVNLFLQAQAASQENLEQLWENNYASIRSQMELRIKDLESELSKMKSFQEYSDKTELEKYKQLYLEEVKLGKSLANKLNKTNERLAEISAKLLVEKEQNRSLLHTLTTRPVLEPPCARNLNNGLMFNRNLTPRENLVISTSSPRPSNDSIETYLTKMQQELQKNISRELAEAAAEFESGICRTSPLGSTDDLVLKTSQEYVQILKKNYML", "length": 1694, "header": "tr|A0A287AYB8-1|A0A287AYB8_PIG Computationally mapped isoform of YME1 like 1 ATPase OS=Sus scrofa OX=9823 GN=LOC100516390 PE=4 SV=2 CANONICAL=A0A287AH84-1" }, "locus": { "chromosome": "10", "start_pos": 48795578, "end_pos": 48695655, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038107.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038107.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049144.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049144.2" } ] } }, { "isoform_ac": "A0A287BGU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84/entry#A0A287BGU4-1", "sequence": { "sequence": "MFSLSSTVQPQPILNLRDLGLSELKIGQIDQLVDSLLPGFCKGKNVSSHWHTSHVSAQSFFENKYVFVQSRGFKTLKSRTRRLQSTSERLAETQHTAPSFVKGFLLRDRGSDIESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIVFILLVVGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTGKLSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEVR", "length": 638, "header": "tr|A0A287BGU4-1|A0A287AH84_PIG Computationally mapped isoform of YME1 like 1 ATPase OS=Sus scrofa OX=9823 GN=LOC100516390 PE=4 SV=2 CANONICAL=A0A287AH84-1" }, "locus": { "chromosome": "10", "start_pos": 48855030, "end_pos": 48811915, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058945.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058945.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055813.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055813.2" } ] } }, { "isoform_ac": "A0A4X1U3W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84/entry#A0A4X1U3W0-1", "sequence": { "sequence": "MFSLSSTVQPQPILNLRDLGLSELKIGQIDQLVDSLLPGFCKGKNVSSHWHTSHVSAQSFFENKYGSLDIFSTLRSSCLYRQHSRTLKRICSDLQYWPVFVQSRGFKTLKSRTRRLQSTSERLAETQHTAPSFVKGFLLRDRGSDIESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIVFILLVVGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTGKLSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEVR", "length": 671, "header": "tr|A0A4X1U3W0-1|A0A4X1U3W0_PIG Computationally mapped isoform of ATP-dependent zinc metalloprotease YME1L1 OS=Sus scrofa OX=9823 GN=LOC100516390 PE=1 SV=1 CANONICAL=A0A287AH84-1" }, "locus": { "chromosome": "10", "start_pos": 48855030, "end_pos": 48811915, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064510.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064510.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040471.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040471.2" } ] } }, { "isoform_ac": "A0A8W4FHM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84/entry#A0A8W4FHM7-1", "sequence": { "sequence": "MFSLSSTVQPQVTVPLSHLINAFHSPKNTSISVSASFSQNQHRDVVPEHEAPSSEPILNLRDLGLSELKIGQIDQLVDSLLPGFCKGKNVSSHWHTSHVSAQSFFENKYGSLDIFSTLRSSCLYRQHSRTLKRICSDLQYWPVFVQSRGFKTLKSRTRRLQSTSERLAETQHTAPSFVKVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTGKLSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEVR", "length": 609, "header": "tr|A0A8W4FHM7-1|A0A287AH84_PIG Computationally mapped isoform of YME1 like 1 ATPase OS=Sus scrofa OX=9823 GN=LOC100516390 PE=4 SV=1 CANONICAL=A0A287AH84-1" }, "locus": { "chromosome": "10", "start_pos": 48855030, "end_pos": 48811915, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102433.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102433.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078825.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078825.1" } ] } }, { "isoform_ac": "F1RVK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84/entry#F1RVK1-1", "sequence": { "sequence": "MFSLSSTVQPQVTVPLSHLINAFHSPKNTSISVSASFSQNQHRDVVPEHEAPSSEPILNLRDLGLSELKIGQIDQLVDSLLPGFCKGKNVSSHWHTSHVSAQSFFENKYGSLDIFSTLRSSCLYRQHSRTLKRICSDLQYWPVFVQSRGFKTLKSRTRRLQSTSERLAETQHTAPSFVKGFLLRDRGSDIESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIVFILLVVGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTGKLSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEDCSPFGLCQWPSSSGNSPGREEMPA", "length": 738, "header": "tr|F1RVK1-1|A0A287AH84_PIG Computationally mapped isoform of YME1 like 1 ATPase OS=Sus scrofa OX=9823 GN=LOC100516390 PE=4 SV=4 CANONICAL=A0A287AH84-1" }, "locus": { "chromosome": "10", "start_pos": 48855030, "end_pos": 48788300, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012110.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012110.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011802.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011802.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FHM7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHM7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516390", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516390", "resource": "KEGG Pathway" }, { "id": "R-SSC-9696264", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696264", "resource": "Reactome", "description": "RND3 GTPase cycle" }, { "id": "R-SSC-9696270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "resource": "Reactome", "description": "RND2 GTPase cycle" }, { "id": "R-SSC-9696273", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "resource": "Reactome", "description": "RND1 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IJC7-1", "protein_name": "ATP-dependent zinc metalloprotease YME1L1", "gene_name": "yme1l1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFSLSTTLQPQVTVQLSHLINALHSLKGSVSSNTSVSHKHRENTPEQDLNSTEPSLSLRDLGLSDLGLVQIDELLEKLLPRVSQQDSQLKTVPDIWRTSHLSSDSFFHNKHGFSRMGGVTPVFSRQNQSPLQTLCTDLNYLPLLVQNRGFKTLKSRTRRLQGGFEGPVEPEGITPSFMKGFLTRDKGPDVETLEKLLKNKNIPEGQHDAFKTGFAEGFLKAQALTQRTQESLRRTRLILLVLLLVGLYGLSKTPFLSVRFRTTSGLDSAVDPVQMKNVTFEHVKGVEEAKNELQEVVEFLRNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKGNAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLKKIKVDSAVEAEVIARGTVGFSGAELENLVNQAALKAAVDGKDMVTMKELEFAKDKILMGPERRSAEIDKRNKEITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSMLPENDRWSETRAQLLAQMDVSMGGRVAEELIFGNENITTGASSDFDSATKIAKMMVTRFGMSEKLGVMTYSDLTKQSPETQAAIEHEVRILLRDSYERAKALLKSRAKEHRNLAEALLRYETLDAKEIQLVLEGKAINSR", "length": 715 }, "evidence": [ { "id": "A0A287AH84", "url": "https://omabrowser.org/oma/group/A0A287AH84/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O88967-1", "protein_name": "ATP-dependent zinc metalloprotease YME1L1", "gene_name": "Yme1l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSLSSTVQPQVTIPLSHLINAFHSPKNISVSVNTPVSQKQHRDTVPEHEAPSSEPVLNLRDLGLSELKIGQIDKMVENLLPGFYKDKRVSSCWHTSHISAQSFFENKYGHLDMFSTLRSSSLYRQHPKTLRSICSDLQYFPVFIQSRGFKTLKSRTRRLQSTSERLVEAQNIAPSFVKGFLLRDRGTDLESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLILFVLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTGKLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEVR", "length": 715 }, "evidence": [ { "id": "A0A287AH84", "url": "https://omabrowser.org/oma/group/A0A287AH84/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925S8-1", "protein_name": "ATP-dependent zinc metalloprotease YME1L1", "gene_name": "Yme1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSLSSTVQPQVTVPLSHLINAFHSPKNISVSVNTSASPKQHRDTVAEHEAPSSEPVLNLRDLGLSELKIGQIDKLVENLLPGFYKDKRVSSCWHTSHISAQSFFENKYGHLDMFSTLRSSSLYRQHPKTLQSICSDLQNFPVFIQSRGFKTLKSRTRRLQSTSERLAEAQNIAPSFVKGFLLRDRGTDLESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLILFVLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIEFPMHPYSRQTIIQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNEIRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTGKLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEVR", "length": 715 }, "evidence": [ { "id": "A0A287AH84", "url": "https://omabrowser.org/oma/group/A0A287AH84/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96TA2-1", "protein_name": "ATP-dependent zinc metalloprotease YME1L1", "gene_name": "YME1L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFSLSSTVQPQVTVPLSHLINAFHTPKNTSVSLSGVSVSQNQHRDVVPEHEAPSSECMFSDFLTKLNIVSIGKGKIFEGYRSMFMEPAKRMKKSLDTTDNWHIRPEPFSLSIPPSLNLRDLGLSELKIGQIDQLVENLLPGFCKGKNISSHWHTSHVSAQSFFENKYGNLDIFSTLRSSCLYRHHSRALQSICSDLQYWPVFIQSRGFKTLKSRTRRLQSTSERLAETQNIAPSFVKGFLLRDRGSDVESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLILFVLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTGKLSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLEVR", "length": 773 }, "evidence": [ { "id": "A0A287AH84", "url": "https://omabrowser.org/oma/group/A0A287AH84/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of mitochondrial fusion", "id": "GO:0010636", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010636", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH84", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84" } ], "pmid": "" }, { "name": "mitochondrial protein processing", "id": "GO:0034982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034982", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH84", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "metalloendopeptidase activity", "id": "GO:0004222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004222", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH84", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH84", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH84", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH84", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84" } ], "pmid": "" }, { "name": "ATP-dependent peptidase activity", "id": "GO:0004176", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004176", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH84", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial membrane", "id": "GO:0031966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031966", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH84", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1776, "end_pos": 1778, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1900, "end_pos": 1902, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1920, "end_pos": 1922, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1950, "end_pos": 1952, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1968, "end_pos": 1970, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1985, "end_pos": 1987, "annotation": "n_glycosylation_sequon" }, { "start_pos": 28, "end_pos": 30, "annotation": "n_glycosylation_sequon" }, { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" }, { "start_pos": 307, "end_pos": 309, "annotation": "n_glycosylation_sequon" }, { "start_pos": 368, "end_pos": 370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 385, "end_pos": 387, "annotation": "n_glycosylation_sequon" }, { "start_pos": 396, "end_pos": 398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 503, "end_pos": 505, "annotation": "n_glycosylation_sequon" }, { "start_pos": 541, "end_pos": 543, "annotation": "n_glycosylation_sequon" }, { "start_pos": 682, "end_pos": 684, "annotation": "n_glycosylation_sequon" }, { "start_pos": 732, "end_pos": 734, "annotation": "n_glycosylation_sequon" }, { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" }, { "start_pos": 812, "end_pos": 814, "annotation": "n_glycosylation_sequon" }, { "start_pos": 832, "end_pos": 834, "annotation": "n_glycosylation_sequon" }, { "start_pos": 847, "end_pos": 849, "annotation": "n_glycosylation_sequon" }, { "start_pos": 855, "end_pos": 857, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AH84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AH84" }, { "id": "PF14915", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14915" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCDC144C-like coiled-coil", "eco_id": "ECO_0000259", "start_pos": 1119, "end_pos": 1595, 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}, "locus": { "chromosome": "8", "start_pos": 86545395, "end_pos": 86531273, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076256.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076256.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070228.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070228.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda 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"https://www.uniprot.org/uniprotkb/A0A5G2R405-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5Z2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5Z2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5Z2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5Z2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASPRTRKVLKEIRVQDGNNVCFECGAFNPQWVSVSYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDAELEKMKAGGNAKFQEFLESQEDYDPGWSLQEKYNSKAAALFRDKVATVAEGGEWSLESSPARNWTPPRPKMLPTCAHGATGRPQNSTASSDKAFEDWLNDDLGSYQGAPENRYVGFGNTVPPQKKEDDFLNSAMSSLYSGWSSFTTGASRFASAAKEGATKFGSQASQKASELGHSLNESVLKPAQEKVKEGKIFDDVTSGVSQLASKVQGAGSRGWRDVTTFFSGRTEDSSDRPPEGQSHQNSGGDHSQSSPFDPGFWEAFGSADPAKAHRSPSSDSWTCADASADRRSSDSWDVWGSGSASNNKNSDSGDGGEAWGGGGEGRAKVTKKAAPPPAVDEGWDNQDW", "length": 416, "header": "tr|A0A287AQ96-1|A0A287AQ96_PIG Isoform 1 of ADP-ribosylation factor GTPase-activating protein 1 OS=Sus scrofa OX=9823 GN=ARFGAP1 PE=4 SV=3 CANONICAL=A0A287AQ96-1" }, "isoforms": [ { "isoform_ac": "A0A286ZJ05-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ96/entry#A0A286ZJ05-1", "sequence": { "sequence": "MASPRTRKVLKEIRVQDGNNVCFECGAFNPQWVSVSYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDAELEKMKAGGNAKFQEFLESQEDYDPGWSLQEKYNSKAAALFRDKVATVAEGGEWSLESSPARNWTPPRPKMLPTCAHGATGRPQNSTASSDKAFEDWLNDDLGSYQGAPENRYVGFGNTVPPQKKEDDFLNSAMSSLYSGWSSFTTGASRFASAAKEGATKFGSQASQKFWGSKQQPEPASELGHSLNESVLKPAQEKVKEGKIFDDVTSGVSQLASKGAGSRGWRDVTTFFSGRTEDSSDRPPEGQSHQNSGGDHSQSSPFDPGFWEAFGSADPAKAHRSPSSDSWTCADASADRRSSDSWDVWGSGSASNNKNSDSGDGGEAWGGGGEGRAKVTKKAAPPPAVDEGWDNQDW", "length": 424, "header": "tr|A0A286ZJ05-1|A0A287AQ96_PIG Computationally mapped isoform of ADP-ribosylation factor GTPase-activating protein 1 OS=Sus scrofa OX=9823 GN=ARFGAP1 PE=4 SV=2 CANONICAL=A0A287AQ96-1" }, "locus": { "chromosome": "17", "start_pos": 62391558, "end_pos": 62383248, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061928.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061928.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031462.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031462.2" } ] } }, { "isoform_ac": "A0A287AQ96-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ96/entry#A0A287AQ96-1", "sequence": { "sequence": "MASPRTRKVLKEIRVQDGNNVCFECGAFNPQWVSVSYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDAELEKMKAGGNAKFQEFLESQEDYDPGWSLQEKYNSKAAALFRDKVATVAEGGEWSLESSPARNWTPPRPKMLPTCAHGATGRPQNSTASSDKAFEDWLNDDLGSYQGAPENRYVGFGNTVPPQKKEDDFLNSAMSSLYSGWSSFTTGASRFASAAKEGATKFGSQASQKASELGHSLNESVLKPAQEKVKEGKIFDDVTSGVSQLASKVQGAGSRGWRDVTTFFSGRTEDSSDRPPEGQSHQNSGGDHSQSSPFDPGFWEAFGSADPAKAHRSPSSDSWTCADASADRRSSDSWDVWGSGSASNNKNSDSGDGGEAWGGGGEGRAKVTKKAAPPPAVDEGWDNQDW", "length": 416, "header": "tr|A0A287AQ96-1|A0A287AQ96_PIG Isoform 1 of ADP-ribosylation factor GTPase-activating protein 1 OS=Sus scrofa OX=9823 GN=ARFGAP1 PE=4 SV=3 CANONICAL=A0A287AQ96-1" }, "locus": { "chromosome": "17", "start_pos": 62391558, "end_pos": 62383248, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039233.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039233.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046069.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046069.3" } ] } }, { "isoform_ac": "A0A5G2R405-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ96/entry#A0A5G2R405-1", "sequence": { "sequence": "TPSSRSSWSPRRTTTPAGPCRRSTTARPPPCFGTRATGRPQNSTASSDKAFEDWLNDDLGSYQGAPENRYVGFGNTVPPQKKEDDFLNSAMSSLYSGWSSFTTGASRFASAAKEGATKFGSQASQKASELGHSLNESVLKPAQEKVKEGKIFDDVTSGVSQLASKVQGAGSRGWRDVTTFFSGRTEDSSDRPPEGQSHQNSGGDHSQSSPFDPGFWEAFGSADPAKAHRSPSSDSWTCADASADRRSSDSWDVWGSGSASNNKNSDSGDGGEAWGGGGEGRAKVTKKAAPPPAVDEGWDNQDW", "length": 303, "header": "tr|A0A5G2R405-1|A0A287AQ96_PIG Computationally mapped isoform of ADP-ribosylation factor GTPase-activating protein 1 OS=Sus scrofa OX=9823 GN=ARFGAP1 PE=4 SV=2 CANONICAL=A0A287AQ96-1" }, "locus": { "chromosome": "17", "start_pos": 62391558, "end_pos": 62384088, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087960.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087960.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071821.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071821.2" } ] } }, { "isoform_ac": "A0A5G2R5Z2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ96/entry#A0A5G2R5Z2-1", "sequence": { "sequence": "METTFVRSVTMDKWKDAELEKMKAGGNAKFQEFLESQEDYDPGWSLQEKYNSKAAALFRDKVATVAEGGEWSLESSPARNWTPPRPKMLPTCAHGATGRPQNSTASSDKAFEDWLNDDLGSYQGAPENRYVGFGNTVPPQKKEDDFLNSAMSSLYSGWSSFTTGASRFASAAKEGATKFGSQASQKFWGSKQQPEPASELGHSLNESVLKPAQEKVKEGKIFDDVTSGVSQLASKGAGSRGWRDVTTFFSGRTEDSSDRPPEGQSHQNSGGDHSQSSPFDPGFWEAFGSADPAKAHRSPSSDSWTCADASADRRSSDSWDVWGSGSASNNKNSDSGDGGEAWGGGGEGRAKVTKKAAPPPAVDEGWDNQDW", "length": 371, "header": "tr|A0A5G2R5Z2-1|A0A287AQ96_PIG Computationally mapped isoform of ADP-ribosylation factor GTPase-activating protein 1 OS=Sus scrofa OX=9823 GN=ARFGAP1 PE=4 SV=1 CANONICAL=A0A287AQ96-1" }, "locus": { "chromosome": "17", "start_pos": 62391558, "end_pos": 62383297, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081416.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081416.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071750.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071750.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R405", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R405" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6807878", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "resource": "Reactome", "description": "COPI-mediated anterograde transport" }, { "id": "R-SSC-6811434", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "resource": "Reactome", "description": "COPI-dependent Golgi-to-ER retrograde traffic" } ], "orthologs": [ { "uniprot_canonical_ac": "P35197-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein GCS1", "gene_name": "GCS1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSDWKVDPDTRRRLLQLQKIGANKKCMDCGAPNPQWATPKFGAFICLECAGIHRGLGVHISFVRSITMDQFKPEELLRMEKGGNEPLTEWFKSHNIDLSLPQKVKYDNPVAEDYKEKLTCLCEDRVFEEREHLDFDASKLSATSQTAASATPGVAQSREGTPLENRRSATPANSSNGANFQKEKNEAYFAELGKKNQSRPDHLPPSQGGKYQGFGSTPAKPPQERSAGSSNTLSLENFQADPLGTLSRGWGLFSSAVTKSFEDVNETVIKPHVQQWQSGELSEETKRAAAQFGQKFQETSSYGFQAFSNFTKNFNGNAEDSSTAGNTTHTEYQKIDNNDKKNEQDEDKWDDF", "length": 352 }, "evidence": [ { "id": "A0A287AQ96", "url": "https://omabrowser.org/oma/group/A0A287AQ96/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q62848-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein 1", "gene_name": "Arfgap1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASPRTRKVLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLEAQDDYEPSWSLQDKYSSRAAALFRDKVATLAEGKEWSLESSPAQNWTPPQPKTLQFTAHRPAGQPQNVTTSGDKAFEDWLNDDLGSYQGAQENRYVGFGNTVPPQKREDDFLNSAMSSLYSGWSSFTTGASKFASAAKEGATKFGSQASQKASELGHSLNENVLKPAQEKVKEGRIFDDVSSGVSQLASKVQGVGSKGWRDVTTFFSGKAEDTSDRPLEGHSYQNSSGDNSQNSTIDQSFWETFGSAEPPKAKSPSSDSWTCADASTGRRSSDSWDIWGSGSASNNKNSNSDGWESWEGASGEGRAKATKKAAPSTAADEGWDNQNW", "length": 415 }, "evidence": [ { "id": "A0A287AQ96", "url": "https://omabrowser.org/oma/group/A0A287AQ96/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N6T3-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein 1", "gene_name": "ARFGAP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AK67-1", "uniprot_ac": "A0A287AK67", "uniprot_id": "A0A287AK67_PIG", "mass": { "chemical_mass": 89365.0, "monoisotopic_mass": 89365.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287AK67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AK67/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AK67", "url": "https://www.uniprot.org/uniprotkb/A0A287AK67" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287AK67", "locus": {} } ], "crossref": [ { "id": "A0A287AK67", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AK67", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017577", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017577", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032754", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032754", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23045", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23045", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23045:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23045:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14914", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14914", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15779", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15779", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZN09", "url": "https://www.uniprot.org/uniprotkb/A0A286ZN09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZN09-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZN09-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AK67", "url": "https://www.uniprot.org/uniprotkb/A0A287AK67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AK67-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AK67-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJ52", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJ52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJ52-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJ52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPI7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RT73", "url": "https://www.uniprot.org/uniprotkb/F1RT73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RT73-1", "url": "https://www.uniprot.org/uniprotkb/F1RT73-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LL86", "url": "https://www.uniprot.org/uniprotkb/I3LL86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LL86-1", "url": "https://www.uniprot.org/uniprotkb/I3LL86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARELPHAVEITFSFFRILRDNALIELHKDSFEGLLSLWYLDLSCNKIQSIERRTFESLPFLQYVNLGCNLITEVSFGTFQAWHGMQFLHKLVLSHNPLTTVEDSYLYKLPALRYLDLGTTQVSLTTVESILMMTLELEKILPSHMACCLCQFKNSIEVVCKTVKLHCDRCLQDSAHCETSLGHAEGSFMKVLQARKKNTSTELIIEPERPSSGRSRVSLSSFMDEQPDFSDESDVISALNYILPYFSEGNLEDAESTLLPFIQLLFSNSAEKRPPKVNRVLEGPRGIKKRHFREMRRQSPRGKENAQPLVENAARGSKLRGPSARELAQLHVAQRPGKLVANSLEKEALLLKERKAEVSSFLKQYSRGRPAASIHPEAPGKVKKKSKDLSNTLLVLEDANARVKNMKTSKTVSHPRKIYSFRNSHSPLLHRTAVPKKGQGFPGKISSYRSLFALRPPSSAVRSLINSPSLEASSPSGEPSSQEKPSPQSFSPSEPSTENVISENNTPQVVFEELTTASGTTTLSGTLPASTAQSTLPSGYSAVPADNVMPTDQHTHKIQWEYHGVGTDVASKPTSFIAPGVSSPGTQFEAQLNQQLQSLIPNNDVRGLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKVSKAEWDTDQWKTENYINENTEAQGEQKESSELPKEVPGYGYNNKLILAISVTVVVMLLIVIFCLIECRGQRKEGRCRLNISLSALQREGFFWRRRPLWLQDMYRPLNATRKKNMAQKLHDKESSDEEEVLHADLGEESDAAPEVPPE", "length": 799, "header": "tr|A0A287AK67-1|A0A287AK67_PIG Isoform 1 of LRRC37A/B like protein 1 C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=4 CANONICAL=A0A287AK67-1" }, "isoforms": [ { "isoform_ac": "A0A286ZN09-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AK67/entry#A0A286ZN09-1", "sequence": { "sequence": "SQSVDFQGNAISYIDGNTWKAFQWVETLILRDNALIELHKDSFEGLLSLWYLVLSHNPLTTVEDSYLYKLPALRYLDLGTTQVSLTTVESILMMTLELEKILPSHMACCLCQFKNSIEVVCKTVKLHCDRCLQDSAHCETSLGHAEGSFMKVLQARKKNTSTELIIEPERPSSGRSRVSLSSFMDEQPDFSDESDVISALNYILPYFSEGNLEDAESTLLPFIQLLFSNSLEEVESAEKRPPKVNRVLEGPRGIKKRHFREMRRQSPRGKENAQPLVENAARGSKLRGPSARELAQLHVAQRPGKLVANSLEKEALLLKERKAEVSSFLKQYSRGRPAASIHPEAPGKVKKKSKDLSNTLLVLEDANARVKNMKTSKTVSHPRKIYSFRNSHSPLLHRTAVPKKGQGFPGKISSYRSLFALRPPSSAVRSLINSPSLEASSPSGEPSSQEKPSPQSFSPSEPSTENVISENNTPQVVFEELTTASGTTTLSGTLPASTAQSTLPSGYSAVPADNVMPTDQHTHKIQWEYHGVGTDVASKPTSFIAPGVSSPGTQFEAQLNQQLQSLIPNNDVRGLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKVSKAEWDTDQWKTENYINENTEAQGEQKESSELPKEVPGYGYNNKLILAISVTVVVMLLIVIFCLIEVRTTITSDSEPAN", "length": 697, "header": "tr|A0A286ZN09-1|A0A287AK67_PIG Computationally mapped isoform of LRRC37A/B like protein 1 C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=A0A287AK67-1" }, "locus": { "chromosome": "12", "start_pos": 17901773, "end_pos": 17869794, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060338.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060338.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032842.3", "url": "https://www.ensembl.org/id/ENSSSCP00000032842.3" } ] } }, { "isoform_ac": "A0A287AK67-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AK67/entry#A0A287AK67-1", "sequence": { "sequence": "MARELPHAVEITFSFFRILRDNALIELHKDSFEGLLSLWYLDLSCNKIQSIERRTFESLPFLQYVNLGCNLITEVSFGTFQAWHGMQFLHKLVLSHNPLTTVEDSYLYKLPALRYLDLGTTQVSLTTVESILMMTLELEKILPSHMACCLCQFKNSIEVVCKTVKLHCDRCLQDSAHCETSLGHAEGSFMKVLQARKKNTSTELIIEPERPSSGRSRVSLSSFMDEQPDFSDESDVISALNYILPYFSEGNLEDAESTLLPFIQLLFSNSAEKRPPKVNRVLEGPRGIKKRHFREMRRQSPRGKENAQPLVENAARGSKLRGPSARELAQLHVAQRPGKLVANSLEKEALLLKERKAEVSSFLKQYSRGRPAASIHPEAPGKVKKKSKDLSNTLLVLEDANARVKNMKTSKTVSHPRKIYSFRNSHSPLLHRTAVPKKGQGFPGKISSYRSLFALRPPSSAVRSLINSPSLEASSPSGEPSSQEKPSPQSFSPSEPSTENVISENNTPQVVFEELTTASGTTTLSGTLPASTAQSTLPSGYSAVPADNVMPTDQHTHKIQWEYHGVGTDVASKPTSFIAPGVSSPGTQFEAQLNQQLQSLIPNNDVRGLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKVSKAEWDTDQWKTENYINENTEAQGEQKESSELPKEVPGYGYNNKLILAISVTVVVMLLIVIFCLIECRGQRKEGRCRLNISLSALQREGFFWRRRPLWLQDMYRPLNATRKKNMAQKLHDKESSDEEEVLHADLGEESDAAPEVPPE", "length": 799, "header": "tr|A0A287AK67-1|A0A287AK67_PIG Isoform 1 of LRRC37A/B like protein 1 C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=4 CANONICAL=A0A287AK67-1" }, "locus": { "chromosome": "12", "start_pos": 17906321, "end_pos": 17881718, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039955.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039955.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044294.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044294.3" } ] } }, { "isoform_ac": "A0A8W4FJ52-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AK67/entry#A0A8W4FJ52-1", "sequence": { "sequence": "VCCCLVYFCPISLPCSEPVSSFSTDKETSLGHAEGSFMKVLQARKKNTSTELIIEPERPSSGRSRVSLSSFMDEQPDFSDESDVISALNYILPYFSEGNLEDAESTLLPFIQLLFSNSLEEVESAEKRPPKVNRVLEGPRGIKKRHFREMRRQSPRGKENAQPLVENAARGSKLRGPSARELAQLHVAQRPGKLVANSLEKEALLLKERKAEVSSFLKQYSRGRPAASIHPEAPGKVKKKSKDLSNTLLVLEDANARVKNMKTSKTVSHPRKIYSFRNSHSPLLHRTAVPKKGQGFPGKISSYRSLFALRPPSSAVRSLINSPSLEASSPSGEPSSQEKPSPQSFSPSEPSTENVISENNTPQVVFEELTTASGTTTLSGTLPASTAQSTLPSGYSAVPADNVMPTDQHTHKIQWEYHGVGTDVASKPTSFIAPGVSSPGTQFEAQLNQQLQSLIPNNDVRGLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKVSKAEWDTDQWKTENYINENTEAQGEQKESSELPKEVPGYGYNNKLILAISVTVVVMLLIVIFCLIEVRTTITSDSEPAN", "length": 585, "header": "tr|A0A8W4FJ52-1|A0A287AK67_PIG Computationally mapped isoform of LRRC37A/B like protein 1 C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A287AK67-1" }, "locus": { "chromosome": "12", "start_pos": 17901773, "end_pos": 17899137, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103462.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103462.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078919.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078919.1" } ] } }, { "isoform_ac": "A0A8W4FPI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AK67/entry#A0A8W4FPI7-1", "sequence": { "sequence": "MEADHPTVLQQTTAPPAYLEATLPHPEQLQAQRPYLTEVTVQPSDLELTISAEPAKGDEPSAATQETPAQTLEPPKEVVVQPPLYQSATNAAPGQDQAPHPTLPNPPVQPLDVVLTVTPEPTTEVEHPTTPPPNPTEGTLPRPEQVQHQHPTLTEVTVQPLDLGLSITTEPTKEEEPSPATQETLTQPPVSQSQTVLTPHQGQAELPTSPSVTGKPVNQEPSTTAEPSTEAEHSTGLQQTTAPPIEHPEATRPHADLTQVTIQPVELTETTGSGVEAEPSPTEQETPPQPPEPLHQEAEPSTVLQETTSPAPEYPAVTLPYPGLTQVTAPPTTLPSAQSSVVHSAQYPPEKEQSEQNVVTEHVDICELCTCRNETLSCTGLSPNQRLRSVPVLGPKSYNHTFTVLDFQGNAISYIDGNTWKAFQWVETLILRDNALIELHKDSFEGLLSLWYLDLSCNKIQSIERRTFESLPFLQYVNLGCNLITEVSFGTFQAWHGMQFLHKLVLSHNPLTTVEDSYLYKLPALRYLILPSHMACCLCQFKNSIEVVCKTVKLHCDRCLQDSAHCDKETSLGHAEGSFMKVLQARKKNTSTELIIEPERPSSGRISSPGTQFEAQLNQQLQSLIPNNDVRGLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKVSKAEWDTDQWKTENYINENTEAQGEQKESSELPKEVPGYGYNNKLILAISVTVVVMLLIVIFCLIEHSHLSTYYRLNPLFSHED", "length": 760, "header": "tr|A0A8W4FPI7-1|A0A287AK67_PIG Computationally mapped isoform of LRRC37A/B like protein 1 C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A287AK67-1" }, "locus": { "chromosome": "12", "start_pos": 17901834, "end_pos": 17866293, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098961.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098961.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080225.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080225.1" } ] } }, { "isoform_ac": "F1RT73-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AK67/entry#F1RT73-1", "sequence": { "sequence": "YQFLLDLSLLLFLSHNPLTTVEDSYLYKLPALRYLDLGTTQVSLTTVESILMMTLELEKILPSHMACCLCQFKNSIEVVCKTVKLHCDRCLQDSAHCDKETSLGHAEGSFMKVLQARKKNTSTELIIEPERPSSGRSRVSLSSFMDEQPDFSDESDVISALNYILPYFSEGNLEDAESTLLPFIQLLFSNSAEKRPPKVNRVLEGPRGIKKRHFREMRRQSPRGKENAQPLVENAARGSKLRGPSARELAQLHVAQRPGKLVANSLEKEALLLKERKAEVSSFLKQYSRGRPAASIHPEAPGKVKKKSKDLSNTLLVLEDANARVKNMKTSKTVSHPRKIYSFRNSHSPLLHRTAVPKKGQGFPGKISSYRSLFALRPPSSAVRSLINSPSLEASSPSGEPSSQEKPSPQSFSPSEPSTENVISENNTPQVVFEELTTASGTTTLSGTLPASTAQSTLPSGYSAVPADNVMPTDQHTHKIQWEYHGVGTDVASKPTSFIAPGVSSPGTQFEAQLNQQLQSLIPNNDVRGLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKVSKAEWDTDQWKTENYINENTEAQGEQKESSELPKEVPGYGYNNKLILAISVTVVVMLLIVIFCLIECRGQRKEGRCRLNISLSALQREGFFWRRRPLWLQDMYRPLNATRKKNMAQKLHDKESSDEEEVLHADLGEESDAAPEVPPE", "length": 720, "header": "tr|F1RT73-1|A0A287AK67_PIG Computationally mapped isoform of LRRC37A/B like protein 1 C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=5 CANONICAL=A0A287AK67-1" }, "locus": { "chromosome": "12", "start_pos": 17906321, "end_pos": 17892537, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019134.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019134.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018628.5", "url": "https://www.ensembl.org/id/ENSSSCP00000018628.5" } ] } }, { "isoform_ac": "I3LL86-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AK67/entry#I3LL86-1", "sequence": { "sequence": "YQFLLDLSLLLFLSHNPLTTVEDSYLYKLPALRYLDLGTTQVSLTTVESILMMTLELEKILPSHMACCLCQFKNSIEVVCKTVKLHCDRCLQDSAHCETSLGHAEGSFMKVLQARKKNTSTELIIEPERPSSGRSRVSLSSFMDEQPDFSDESDVISALNYILPYFSEGNLEDAESTLLPFIQLLFSNSAEKRPPKVNRVLEGPRGIKKRHFREMRRQSPRGKENAQPLVENAARGSKLRGPSARELAQLHVAQRPGKLVANSLEKEALLLKERKAEVSSFLKQYSRGRPAASIHPEAPGKVKKKSKDLSNTLLVLEDANARVKNMKTSKTVSHPRKIYSFRNSHSPLLHRTAVPKKGQGFPGKISSYRSLFALRPPSSAVRSLINSPSLEASSPSGEPSSQEKPSPQSFSPSEPSTENVISENNTPQVVFEELTTASGTTTLSGTLPASTAQSTLPSGYSAVPADNVMPTDQHTHKIQWEYHGVGTDVASKPTSFIAPGVSSPGTQFEAQLNQQLQSLIPNNDVRGLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKVSKAEWDTDQWKTENYINENTEAQGEQKESSELPKEVPGYGYNNKLILAISVTVVVMLLIVIFCLIEVCSRKRALREGNVGLFWNRRTEGFFWRRRPLWLQDMYRPLNATRKKNMAQKLHDKESSDEEEVLHADLGEESDAAPEVPPE", "length": 718, "header": "tr|I3LL86-1|A0A287AK67_PIG Computationally mapped isoform of LRRC37A/B like protein 1 C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=4 CANONICAL=A0A287AK67-1" }, "locus": { "chromosome": "12", "start_pos": 17906321, "end_pos": 17892537, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030733.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030733.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024853.4", "url": "https://www.ensembl.org/id/ENSSSCP00000024853.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZN09", "url": "https://www.uniprot.org/uniprotkb/A0A286ZN09" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 505, "end_pos": 507, "annotation": "n_glycosylation_sequon" }, { "start_pos": 731, "end_pos": 733, "annotation": "n_glycosylation_sequon" }, { "start_pos": 759, "end_pos": 761, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AK67-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 799, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AK67-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AK67" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AK67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AK67" }, { "id": "PF14914", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14914" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRC37A/B like protein 1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 584, "end_pos": 725, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 199, "end_pos": 201 }, { "start_pos": 505, "end_pos": 507 }, { "start_pos": 731, "end_pos": 733 }, { "start_pos": 759, "end_pos": 761 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AHR6-1", "uniprot_ac": "A0A287AHR6", "uniprot_id": "A0A287AHR6_PIG", "mass": { "chemical_mass": 114666.0, "monoisotopic_mass": 114666.0 }, "refseq": {}, "gene_names": [ { "name": "NEBL", "type": "recommended", "evidence": [ { "id": "A0A287AHR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6" } ] } ], "protein_names": [ { "name": "Nebulette", "type": "synonym", "evidence": [ { "id": "A0A287AHR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AHR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NEBL", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6", "locus": { "chromosome": "10", "start_pos": 53958047, "end_pos": 53602936, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011090", "url": "https://www.ensembl.org/id/ENSSSCG00000011090" } ] } } ], "crossref": [ { "id": "A0A287AHR6", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AHR6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011090", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011090", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09447", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09447", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11935", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11935", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522395", "url": "https://www.ncbi.nlm.nih.gov/gene/100522395", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000900", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000900", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013998", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013998", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035631", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035631", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051759", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051759", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055297", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055297", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CEAHYPK", "url": "https://omabrowser.org/oma/group/CEAHYPK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8W4FA88", "url": "https://www.orthodb.org/?gene=A0A8W4FA88", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11039", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11039", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11039:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11039:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46218", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46218", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46218:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46218:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00880", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00880", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14604", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14604", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZNE6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZNE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BFR4", "url": "https://www.uniprot.org/uniprotkb/A0A287BFR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BFR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BFR4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ92-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ92-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FA88", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FA88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FA88-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FA88-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVG6", "url": "https://www.uniprot.org/uniprotkb/F1RVG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVG6-1", "url": "https://www.uniprot.org/uniprotkb/F1RVG6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRFPFVRLALATLSDPVFFKPVIEDLSMELARKCTKLISDIHYKEEHRKSKGKCTFVTDTPMLNHVKHIGAFISEAKYKGTIKGDLSNSLYKQMPATIDSVFAKEVTQLQSEIAYKQKHQAARGFSDYAHMKEPPEVRHALEVTKHQSNISYRKDVQDTHTYSAEPDRPDIKMATQISKIVSNAEYKKGQGVMNKEPAVIGRPDFEHAVEASKLSSQVKYKEKFDNEMKDKKHHYNPLESASFRQSQLATALASNVKYKKDVENMHDPVSGLPNLFLDHALKASKMLSGREYRKLFEENKGMYHFEADAAEHLHHKDNARLQSQVKYKEEYEKNKGKSMLEFVETPSYQASKEAQKMQSEKVYREDFEKEIKGRSSLDLDKTPEFLHVKYITNLLKEKEYKKDLENEIKGKGMELNSEVLDIQRAKRASEMASEKEYKKDLESKIKGKGMQVGSDALGIQHAKRASEIASEVSRGNDADLRTHTWNLTMSTLLQKATQSSEDYFLFFQKEYKKDLENEIKGKGMQVSVDIPDMLRAKRASEIYSQKKYKDEAEKMLSNYSTVADTPEIQRIKTTQQNISAVFYKKEVGAGTAVKDTPEIERVKKNQQNISSVKYKEEMKPATAICDPPELRRVKENQKNLSNLQYQERCHRATPVSSTPEMERVRRNQEQLSAVKYKGELKQATAISDPPELKRVKENQKNLSNVYYKGHLGRATALSVTPEMERVKKNQENISSVKYTQDQKQMKGRPSLILDTPGLRHVKEAQSHISMVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVDLKVWRTDPGSIFDIDPLEDNIQSRSLRMLSEKASHYWRQRSRSHSGSTFGTGLGDDKSEISETYPSFSCCSEGTRPSDEGAPVLPGAYQQSHSQGYGYMHQTSLSSVRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGKTGMLPANYIEFVN", "length": 1002, "header": "tr|A0A287AHR6-1|A0A287AHR6_PIG Isoform 1 of Nebulette OS=Sus scrofa OX=9823 GN=NEBL PE=1 SV=3 CANONICAL=A0A287AHR6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZNE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6/entry#A0A286ZNE6-1", "sequence": { "sequence": "MCSDRAQDSLFLPPQNLACTLRQTHANGNMQVNAVKIVMGQKVPSRTHVRDQECFLAEMESQLRPTRHYPKQSFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAPVLPGAYQQSHSQGYGYMHQTSLSSVRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGKTGMLPANYIEFVN", "length": 282, "header": "tr|A0A286ZNE6-1|A0A287AHR6_PIG Computationally mapped isoform of Nebulette OS=Sus scrofa OX=9823 GN=NEBL PE=1 SV=2 CANONICAL=A0A287AHR6-1" }, "locus": { "chromosome": "10", "start_pos": 53952733, "end_pos": 53728614, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045325.2", "url": "https://www.ensembl.org/id/ENSSSCT00000045325.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033103.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033103.2" } ] } }, { "isoform_ac": "A0A287AHR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6/entry#A0A287AHR6-1", "sequence": { "sequence": "MRFPFVRLALATLSDPVFFKPVIEDLSMELARKCTKLISDIHYKEEHRKSKGKCTFVTDTPMLNHVKHIGAFISEAKYKGTIKGDLSNSLYKQMPATIDSVFAKEVTQLQSEIAYKQKHQAARGFSDYAHMKEPPEVRHALEVTKHQSNISYRKDVQDTHTYSAEPDRPDIKMATQISKIVSNAEYKKGQGVMNKEPAVIGRPDFEHAVEASKLSSQVKYKEKFDNEMKDKKHHYNPLESASFRQSQLATALASNVKYKKDVENMHDPVSGLPNLFLDHALKASKMLSGREYRKLFEENKGMYHFEADAAEHLHHKDNARLQSQVKYKEEYEKNKGKSMLEFVETPSYQASKEAQKMQSEKVYREDFEKEIKGRSSLDLDKTPEFLHVKYITNLLKEKEYKKDLENEIKGKGMELNSEVLDIQRAKRASEMASEKEYKKDLESKIKGKGMQVGSDALGIQHAKRASEIASEVSRGNDADLRTHTWNLTMSTLLQKATQSSEDYFLFFQKEYKKDLENEIKGKGMQVSVDIPDMLRAKRASEIYSQKKYKDEAEKMLSNYSTVADTPEIQRIKTTQQNISAVFYKKEVGAGTAVKDTPEIERVKKNQQNISSVKYKEEMKPATAICDPPELRRVKENQKNLSNLQYQERCHRATPVSSTPEMERVRRNQEQLSAVKYKGELKQATAISDPPELKRVKENQKNLSNVYYKGHLGRATALSVTPEMERVKKNQENISSVKYTQDQKQMKGRPSLILDTPGLRHVKEAQSHISMVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVDLKVWRTDPGSIFDIDPLEDNIQSRSLRMLSEKASHYWRQRSRSHSGSTFGTGLGDDKSEISETYPSFSCCSEGTRPSDEGAPVLPGAYQQSHSQGYGYMHQTSLSSVRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGKTGMLPANYIEFVN", "length": 1002, "header": "tr|A0A287AHR6-1|A0A287AHR6_PIG Isoform 1 of Nebulette OS=Sus scrofa OX=9823 GN=NEBL PE=1 SV=3 CANONICAL=A0A287AHR6-1" }, "locus": { "chromosome": "10", "start_pos": 53952733, "end_pos": 53840573, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062235.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062235.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043408.3", "url": "https://www.ensembl.org/id/ENSSSCP00000043408.3" } ] } }, { "isoform_ac": "A0A287BFR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6/entry#A0A287BFR4-1", "sequence": { "sequence": "MRKALSSSPGSLTKVFFKPVIEDLSMELARKCTKLISDIHYKEEHRKSKGKCTFVTDTPMLNHVKHIGAFISEAKYKGTIKGDLSNSLYKQMPATIDSVFAKEVTQLQSEIAYKQKHQAARGFSDYAHMKEPPEVRHALEVTKHQSNISYRKDVQDTHTYSAEPDRPDIKMATQISKIVSNAEYKKGQGVMNKEPAVIGRPDFEHAVEASKLSSQVKYKEKFDNEMKDKKHHYNPLESASFRQSQLATALASNVKYKKDVENMHDPVSGLPNLFLDHALKASKMLSGREYRKLFEENKGMYHFEADAAEHLHHKDNARLQSQVKYKEEYEKNKGKSMLEFVETPSYQASKEAQKMQSEKVYREDFEKEIKGRSSLDLDKTPEFLHVKYITNLLKEKEYKKDLENEIKGKGMELNSEVLDIQRAKRASEMASEKEYKKDLESKIKGKGMQVGSDALGIQHAKRASEIASEKDYKRDLETEIRGKGMQVSTGTLDIQRAKRASEMASQKEYKKDLENEIKGKGMQVSVDIPDMLRAKRASEIYSQKKYKDEAEKMLSNYSTVADTPEIQRIKTTQQNISAVFYKKEVGAGTAVKDTPEIERVKKNQQNISSVKYKEEMKPATAICDPPELRRVKENQKNLSNLQYQERCHRATPVSSTPEMERVRRNQEQLSAVKYKGELKQATAISDPPELKRVKENQKNLSNVYYKGHLGRATALSVTPEMERVKKNQENISSVKYTQDQKQMKGRPSLILDTPGLRHVKEAQSHISMVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAPVLPGAYQQSHSQGYGYMHQTSLSSVRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGKTGMLPANYIEFVN", "length": 919, "header": "tr|A0A287BFR4-1|A0A287BFR4_PIG Computationally mapped isoform of Nebulette OS=Sus scrofa OX=9823 GN=NEBL PE=1 SV=2 CANONICAL=A0A287AHR6-1" }, "locus": { "chromosome": "10", "start_pos": 53952733, "end_pos": 53838636, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040834.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040834.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055421.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055421.2" } ] } }, { "isoform_ac": "A0A5G2QZ92-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6/entry#A0A5G2QZ92-1", "sequence": { "sequence": "MRKALSSSPGSLTKVFFKPVIEDLSMELARKCTKLISDIHYKEEHRKSKGKCTFVTDTPMLNHVKHIGAFISEAKYKGTIKGDLSNSLYKQMPATIDSVFAKEVTQLQSEIAYKQKHQAARGFSDYAHMKEPPEVRHALEVTKHQSNISYRKDVQDTHTYSAEPDRPDIKMATQISKIVSNAEYKKGQGVMNKEPAVIGRPDFEHAVEASKLSSQVKYKEKFDNEMKDKKHHYNPLESASFRQSQLATALASNVKYKKDVENMHDPVSGLPNLFLDHALKASKMLSGREYRKLFEENKGMYHFEADAAEHLHHKDNARLQSQVKYKEEYEKNKGKSMLEFVETPSYQASKEAQKMQSEKVYREDFEKEIKGRSSLDLDKTPEFLHVKYITNLLKEKEYKKDLENEIKGKGMELNSEVLDIQRAKRASEMASEKEYKKDLESKIKGKGMQVGSDALGIQHAKRASEIASEKDYKRDLETEIRGKGMQVSTGTLDIQRAKRASEMASQKEYKKDLENEIKGKGMQVSVDIPDMLRAKRASEIYSQKKYKDEAEKMLSNYSTVADTPEIQRIKTTQQNISAVFYKKEVGAGTAVKDTPEIERVKKNQQNISSVKYKEEMKPATAICDPPELRRVKENQKNLSNLQYQERCHRATPVSSTPEMERVRRNQEQLSAVKYKGELKQATAISDPPELKRVKENQKNLSNVYYKGHLGRATALSVTPEMERVKKNQENISSVKYTQDQKQMKGRPSLILDTPGLRHVKEAQSHISMVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVDLKVWRTDPGSIFDIDPLEDNIQSRSLRMLSEKASHYWRQRSRSHSGSTFGTGLGDDKSEISETYPSFSCCSEGTRPSDEGAPVLPGAYQQSHSQGYGYMHQTSLSSVRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGKTGMLPANYIEFVN", "length": 1000, "header": "tr|A0A5G2QZ92-1|A0A287AHR6_PIG Computationally mapped isoform of Nebulette OS=Sus scrofa OX=9823 GN=NEBL PE=1 SV=1 CANONICAL=A0A287AHR6-1" }, "locus": { "chromosome": "10", "start_pos": 53952733, "end_pos": 53838636, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079252.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079252.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063555.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063555.1" } ] } }, { "isoform_ac": "A0A8W4FA88-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6/entry#A0A8W4FA88-1", "sequence": { "sequence": "MNPQCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQSFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAPVLPGAYQQSHSQGYGYMHQTSLSSVRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGKTGMLPANYIEFVN", "length": 270, "header": "tr|A0A8W4FA88-1|A0A287AHR6_PIG Computationally mapped isoform of Nebulette OS=Sus scrofa OX=9823 GN=NEBL PE=1 SV=1 CANONICAL=A0A287AHR6-1" }, "locus": { "chromosome": "10", "start_pos": 53952733, "end_pos": 53603211, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104122.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104122.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075749.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075749.1" } ] } }, { "isoform_ac": "F1RVG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6/entry#F1RVG6-1", "sequence": { "sequence": "MRVPVFEDVKDETEEEKTGEEENEEDKVFFKPVIEDLSMELARKCTKLISDIHYKEEHRKSKGKCTFVTDTPMLNHVKHIGAFISEAKYKGTIKGDLSNSLYKQMPATIDSVFAKEVTQLQSEIAYKQKHQAARGFSDYAHMKEPPEVRHALEVTKHQSNISYRKDVQDTHTYSAEPDRPDIKMATQISKIVSNAEYKKGQGVMNKEPAVIGRPDFEHAVEASKLSSQVKYKEKFDNEMKDKKHHYNPLESASFRQSQLATALASNVKYKKDVENMHDPVSGLPNLFLDHALKASKMLSGREYRKLFEENKGMYHFEADAAEHLHHKDNARLQSQVKYKEEYEKNKGKSMLEFVETPSYQASKEAQKMQSEKVYREDFEKEIKGRSSLDLDKTPEFLHVKYITNLLKEKEYKKDLENEIKGKGMELNSEVLDIQRAKRASEMASEKEYKKDLESKIKGKGMQVGSDALGIQHAKRASEIASEVSRGNDADLRTHTWNLTMSTLLQKATQSSEDYFLFFQKEYKKDLENEIKGKGMQVSVDIPDMLRAKRASEIYSQKKYKDEAEKMLSNYSTVADTPEIQRIKTTQQNISAVFYKKEVGAGTAVKDTPEIERVKKNQQNISSVKYKEEMKPATAICDPPELRRVKENQKNLSNLQYQERCHRATPVSSTPEMERVRRNQEQLSAVKYKGELKQATAISDPPELKRVKENQKNLSNVYYKGHLGRATALSVTPEMERVKKNQENISSVKYTQDQKQMKGRPSLILDTPGLRHVKEAQSHISMVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAPVLPGAYQQSHSQGYGYMHQTSLSSVRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGLETWCC", "length": 914, "header": "tr|F1RVG6-1|A0A287AHR6_PIG Computationally mapped isoform of Nebulette OS=Sus scrofa OX=9823 GN=NEBL PE=1 SV=3 CANONICAL=A0A287AHR6-1" }, "locus": { "chromosome": "10", "start_pos": 53952968, "end_pos": 53840797, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012137.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012137.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011828.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011828.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ92" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XND8-1", "protein_name": "Nebulette", "gene_name": "NEBL", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRVSVTQEFTEDENENGEEERVFLKPVIEDRNMELARKCSEIISDVHYKEEFEKSKGKCIFVPDTPQLKHVKSVGAFISEVKYKGAAKKDLSNSLYQQMPATIDSAFAKELTQLQSKVLYKQKHDAEKGTSDYAHMKEPPDIKHAMEVNKYQSDVSYKRDVQDTHRYTEVLNRPDIKMATEITKIISDAEYKKGRGEMNKEPAVLGRPDFEHAKGVSKLLSQVKYKEQFKKEMKSHQYNPLDSASFKQAQIASTLASNVNYKKDYKESLHDPASDLPNLLYLNHALNISKMHSDVKYRENYEKSKGKSMLEFVDTPLYQVSKDVQKMQSEKIYRKDFEESLKGRPSLDLDKTPEFLHIKQVTNLLKEKEYRKDLEEWMKGKGMTVFEDTPDLIRVKNAAQILNEKQYKKDLETEIKGKGMQVGPDTPEIRRAKKASEIASTKEYKKDLENEIKGKGMEVGMDTPDIQRAKKASEIVSQKEYRKDLETEIIGKGMQVGPFTPEIQRVKRASEIASQKMYKDEAEKMLCNYSAVPDTPEMERIKSTQKNISSVFYKKVVGAGTAVKETPEIERVKKNQQNISSIKYKEETQHATPISDPPELRRIKENQKNISNVHYREQPGKATAVSITPEIERVKKNQDNISSVKYSSDQRQMKGRRSVILDTPELRHVKETQNNISMVKYHEDFEKTKGRGFTPVVDDPITERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVDLKVWRTDPGSIFDIDPLEDNIQSRSLHMLSERASRYSKQYLHSTSLGDYKSDGSDTNPTFSYCSEITRPSDEGAPVLPGAYQQSQSQGYGYMHQTSMSSMRSVHSQPHPAGLRTYRAMYDYSAQDEDEVSFRDGDYIINVQPIDDGWMYGTVQRTGKTGMLPANYIEFVN", "length": 906 }, "evidence": [ { "id": "A0A287AHR6", "url": "https://omabrowser.org/oma/group/A0A287AHR6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O76041-1", "protein_name": "Nebulette", "gene_name": "NEBL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRVPVFEDIKDETEEEKIGEEENEEDQVFYKPVIEDLSMELARKCTELISDIRYKEEFKKSKDKCTFVTDSPMLNHVKNIGAFISEAKYKGTIKADLSNSLYKRMPATIDSVFAGEVTQLQSEVAYKQKHDAAKGFSDYAHMKEPPEVKHAMEVNKHQSNISYRKDVQDTHTYSAELDRPDIKMATQISKIISNAEYKKGQGIMNKEPAVIGRPDFEHAVEASKLSSQIKYKEKFDNEMKDKKHHYNPLESASFRQNQLAATLASNVKYKKDIQNMHDPVSDLPNLLFLDHVLKASKMLSGREYKKLFEENKGMYHFDADAVEHLHHKGNAVLQSQVKYKEEYEKNKGKPMLEFVETPSYQASKEAQKMQSEKVYKEDFEKEIKGRSSLDLDKTPEFLHVKYITNLLREKEYKKDLENEIKGKGMELNSEVLDIQRAKRASEMASEKEYKKDLESIIKGKGMQAGTDTLEMQHAKKAAEIASEKDYKRDLETEIKGKGMQVSTDTLDVQRAKKASEMASQKQYKKDLENEIKGKGMQVSMDIPDILRAKRTSEIYSQRKYKDEAEKMLSNYSTIADTPEIQRIKTTQQNISAVFYKKEVGAGTAVKDSPEIERVKKNQQNISSVKYKEEIKHATAISDPPELKRVKENQKNISNLQYKEQNYKATPVSMTPEIERVRRNQEQLSAVKYKGELQRGTAISDPPELKRAKENQKNISNVYYRGQLGRATTLSVTPEMERVKKNQENISSVKYTQDHKQMKGRPSLILDTPAMRHVKEAQNHISMVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVDLKVWRTDPGSIFDLDPLEDNIQSRSLHMLSEKASHYRRHWSRSHSSSTFGTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVLPGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN", "length": 1014 }, "evidence": [ { "id": "A0A287AHR6", "url": "https://omabrowser.org/oma/group/A0A287AHR6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0II04-1", "protein_name": "Nebulette", "gene_name": "Nebl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKVPVSGDVKEETEEENVEQEENQEAKVSLKPVIEDLSMELARKCTELISDIHYKEEYKKSKDKCTFVTDTPMLNHVKNIGAFISEAKYKGTIKADLSNCLYKDMPATIDSVFAREVSQLQSEVAYKQKHEAEKGFSDYTHMKEPPEVRRAMEVNRHQSNISYRKDMQGTHTYTAELDRPDIKKATQISKIISDAEYKKGQGIVNKEPSVIGRPDFEHAVGASKLSSQVKYKEKFDNEMKEKSHHYNPLGSAFFRQHQFAAVLASDWEYKRDFEENKGLYHFDAEAPEHLHHKGNATLQSQVKYREEYEKNKGKSMLEFVETPSYQSSKEAQKMQSEKVYKEDFEKEIKGRSSLDLDKTPAFLHVKHITNLMREKEYKKDLENEIKGKGMELSSEVLDIQRAKRASEMASEKDYKRDLETEIKGKGMQVSTDTLDVQRAKRASEMASQVRMV", "length": 452 }, "evidence": [ { "id": "A0A287AHR6", "url": "https://omabrowser.org/oma/group/A0A287AHR6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6" } ], "pmid": "" }, { "name": "tropomyosin binding", "id": "GO:0005523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005523", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6" } ], "pmid": "" }, { "name": "filamin binding", "id": "GO:0031005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031005", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6" } ], "pmid": "" }, { "name": "cytoskeletal protein binding", "id": "GO:0008092", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008092", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6" } ], "pmid": "" }, { "name": "stress fiber", "id": "GO:0001725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001725", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cardiac muscle thin filament assembly", "id": "GO:0071691", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071691", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" }, { "start_pos": 558, "end_pos": 560, "annotation": "n_glycosylation_sequon" }, { "start_pos": 577, "end_pos": 579, "annotation": "n_glycosylation_sequon" }, { "start_pos": 608, "end_pos": 610, "annotation": "n_glycosylation_sequon" }, { "start_pos": 639, "end_pos": 641, "annotation": "n_glycosylation_sequon" }, { "start_pos": 701, "end_pos": 703, "annotation": "n_glycosylation_sequon" }, { "start_pos": 732, "end_pos": 734, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AHR6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1002, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AHR6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AHR6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AHR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHR6" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 942, "end_pos": 1002, "start_aa": "Pro", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 149, "end_pos": 151 }, { "start_pos": 486, "end_pos": 488 }, { "start_pos": 558, "end_pos": 560 }, { "start_pos": 577, "end_pos": 579 }, { "start_pos": 608, "end_pos": 610 }, { "start_pos": 639, "end_pos": 641 }, { "start_pos": 701, "end_pos": 703 }, { "start_pos": 732, "end_pos": 734 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBW1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQL3", "url": "https://www.uniprot.org/uniprotkb/F1SQL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQL3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQL3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKAAGGASAAAAESCPPTSAGQSAAAAVEDLSKVSDEELLQWSKEELIRCLRRAEAEKVSAMLDHSNLIREVNRRLQLHLGEIRGLKDINQKLQEDNQELRDLCCFLDDDRQKGKRVSREWQRLGRYTAGVMHKEVALYLQKLKELEVKQEEVVKENMELKELCVLLDEEKGAGCAGSRCSIDSQASLCQLTATSAPYVRDVGDGSSTSSTGSTDSPDHKHHASGGSPEHLQKPRGEGSPEHSKHRSTSPEHLQKPRAPGTPDHPKALKGPSPEHHKPLCKGSPEQQRHPHAGSSPETLPKHVLSGSPEHFQKHRPGGSPEHARHSGGSPEHLQKHALGGSLEHLPRARGTSPEHLKQHYGGSPDHKHVGGGGGGSGGGSREGTLRRQAQEDVSPHHRNVYSGMNESTLSYVRQLEARVRQLEEENRMLPQNRRQPPTRNSSNMEKGWGPRARRVLQWWQGCRGIGRCLPTLPGSFRLSSGADGSNSSPNSPASFSGHTTPSQQPEPVVHSLKVVWRKLGDAAGSCPGIRQHLSGNQYKGPM", "length": 543, "header": "tr|A0A287ALS1-1|A0A287ALS1_PIG Isoform 1 of Coiled-coil domain containing 85A OS=Sus scrofa OX=9823 GN=CCDC85A PE=3 SV=3 CANONICAL=A0A287ALS1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZPJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALS1/entry#A0A286ZPJ4-1", "sequence": { "sequence": "MSKAAGGASAAAAESCPPTSAGQSAAAAVEDLSKVSDEELLQWSKEELIRCLRRAEAEKVSAMLDHSNLIREVNRRLQLHLGEIRGLKDINQKLQEDNQELRDLCCFLDDDRQKGKRVSREWQRLGRYTAGVMHKEVALYLQKLKELEVKQEEVVKENMELKELCVLLDEEKGAGCAGSRCSIDSQASLCQLTATSAPYVRDVGDGSSTSSTGSTDSPDHKHHASGGSPEHLQKPRGEGSPEHSKHRSTSPEHLQKPRAPGTPDHPKALKGPSPEHHKPLCKGSPEQQRHPHAGSSPETLPKHVLSGSPEHFQKHRPGGSPEHARHSGGSPEHLQKHALGGSLEHLPRARGTSPEHLKQHYGGSPDHKHVGGGGGGSGGGSREGTLRRQAQEDVSPHHRNVYSGMNESTLSYVRQLEARVRQLEEENRMLPQNRRQPPTRNSSNMEKGWGPRARRVLQWWQGCRGIGRCLPTLPGSFRLSSGADGSNSSPNSPASFSGHTTPSQQPEPVVHSLKVLDVQETIDRQQGKEYEHDLSETEKAIVREMCNVVWRKLGDAAGSCPGIRQHLSGNQYKGPM", "length": 576, "header": "tr|A0A286ZPJ4-1|A0A287ALS1_PIG Computationally mapped isoform of Coiled-coil domain containing 85A OS=Sus scrofa OX=9823 GN=CCDC85A PE=3 SV=2 CANONICAL=A0A287ALS1-1" }, "locus": { "chromosome": "3", "start_pos": 85164972, "end_pos": 84960110, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045506.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045506.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033397.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033397.2" } ] } }, { "isoform_ac": "A0A286ZUX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALS1/entry#A0A286ZUX7-1", "sequence": { "sequence": "MSKAAGGASAAAAESCPPTSAGQSAAAAVEDLSKVSDEELLQWSKEELIRCLRRAEAEKVSAMLDHSNLIREVNRRLQLHLGEIRGLKDINQKLQEDNQELRDLCCFLDDDRQKGKRVSREWQRLGRYTAGVMHKEVALYLQKLKELEVKQEEVVKENMELKELCVLLDEEKGAGCAGSRCSIDSQASLCQLTATSAPYVRDVGDGSSTSSTGSTDSPDHKHHASGGSPEHLQKPRGEGSPEHSKHRSTSPEHLQKPRAPGTPDHPKALKGPSPEHHKPLCKGSPEQQRHPHAGSSPETLPKHVLSGSPEHFQKHRPGGSPEHARHSGGSPEHLQKHALGGSLEHLPRARGTSPEHLKQHYGGSPDHKHVGGGGGGSGGGSREGTLRRQAQEDVSPHHRNVYSGMNESTLSYVRQLEARVRQLEEENRMLPQGSFRLSSGADGSNSSPNSPASFSGHTTPSQQPEPVVHSLKVVWRKLGDAAGSCPGIRQHLSGNQYKGPM", "length": 501, "header": "tr|A0A286ZUX7-1|A0A287ALS1_PIG Computationally mapped isoform of Coiled-coil domain containing 85A OS=Sus scrofa OX=9823 GN=CCDC85A PE=3 SV=3 CANONICAL=A0A287ALS1-1" }, "locus": { "chromosome": "3", "start_pos": 85164972, "end_pos": 84960110, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058480.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058480.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035440.3", "url": "https://www.ensembl.org/id/ENSSSCP00000035440.3" } ] } }, { "isoform_ac": "A0A287ALS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALS1/entry#A0A287ALS1-1", "sequence": { "sequence": "MSKAAGGASAAAAESCPPTSAGQSAAAAVEDLSKVSDEELLQWSKEELIRCLRRAEAEKVSAMLDHSNLIREVNRRLQLHLGEIRGLKDINQKLQEDNQELRDLCCFLDDDRQKGKRVSREWQRLGRYTAGVMHKEVALYLQKLKELEVKQEEVVKENMELKELCVLLDEEKGAGCAGSRCSIDSQASLCQLTATSAPYVRDVGDGSSTSSTGSTDSPDHKHHASGGSPEHLQKPRGEGSPEHSKHRSTSPEHLQKPRAPGTPDHPKALKGPSPEHHKPLCKGSPEQQRHPHAGSSPETLPKHVLSGSPEHFQKHRPGGSPEHARHSGGSPEHLQKHALGGSLEHLPRARGTSPEHLKQHYGGSPDHKHVGGGGGGSGGGSREGTLRRQAQEDVSPHHRNVYSGMNESTLSYVRQLEARVRQLEEENRMLPQNRRQPPTRNSSNMEKGWGPRARRVLQWWQGCRGIGRCLPTLPGSFRLSSGADGSNSSPNSPASFSGHTTPSQQPEPVVHSLKVVWRKLGDAAGSCPGIRQHLSGNQYKGPM", "length": 543, "header": "tr|A0A287ALS1-1|A0A287ALS1_PIG Isoform 1 of Coiled-coil domain containing 85A OS=Sus scrofa OX=9823 GN=CCDC85A PE=3 SV=3 CANONICAL=A0A287ALS1-1" }, "locus": { "chromosome": "3", "start_pos": 85164972, "end_pos": 84960110, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050611.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050611.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044844.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044844.3" } ] } }, { "isoform_ac": "A0A5G2QF99-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALS1/entry#A0A5G2QF99-1", "sequence": { "sequence": "MSKAAGGASAAAAESCPPTSAGQSAAAAVEDLSKVSDEELLQWSKEELIRCLRRAEAEKVSAMLDHSNLIREVNRRLQLHLGEIRGLKDINQKLQEDNQELRDLCCFLDDDRQKGKRVSREWQRLGRYTAGVMHKEVALYLQKLKELEVKQEEVVKENMELKELCVLLDEEKGAGCAGSRCSIDSQASLCQLTATSAPYVRDVGDGSSTSSTGSTDSPDHKHHASGGSPEHLQKPRGEGSPEHSKHRSTSPEHLQKPRAPGTPDHPKALKGPSPEHHKPLCKGSPEQQRHPHAGSSPETLPKHVLSGSPEHFQKHRPGGSPEHARHSGGSPEHLQKHALGGSLEHLPRARGTSPEHLKQHYGGSPDHKHVGGGGGGSGGGSREGTLRRQAQEDVSPHHRNVYSGMNESAGAGVEVGWGEEHTFVPQIMMCVSPPHLFQSIQLPVR", "length": 445, "header": "tr|A0A5G2QF99-1|A0A287ALS1_PIG Computationally mapped isoform of Coiled-coil domain containing 85A OS=Sus scrofa OX=9823 GN=CCDC85A PE=3 SV=1 CANONICAL=A0A287ALS1-1" }, "locus": { "chromosome": "3", "start_pos": 85164972, "end_pos": 85155606, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083436.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083436.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062405.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062405.1" } ] } }, { "isoform_ac": "A0A5G2RBW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALS1/entry#A0A5G2RBW1-1", "sequence": { "sequence": "MSKAAGGASAAAAESCPPTSAGQSAAAAVEDLSKVSDEELLQWSKEELIRCLRRAEAEKVSAMLDHSNLIREVNRRLQLHLGEIRGLKDINQKLQEDNQELRDLCCFLDDDRQKGKRVSREWQRLGRYTAGVMHKEVALYLQKLKELEVKQEEVVKENMELKELCVLLDEEKGAGCAGSRCSIDSQASLCQLTATSAPYVRDVGDGSSTSSTGSTDSPDHKHHASGGSPEHLQKPRGEGSPEHSKHRSTSPEHLQKPRAPGTPDHPKALKGPSPEHHKPLCKGSPEQQRHPHAGSSPETLPKHVLSGSPEHFQKHRPGGSPEHARHSGGSPEHLQKHALGGSLEHLPRARGTSPEHLKQHYGGSPDHKHVGGGGGGSGGGSREGTLRRQAQEDVSPHHRNVYSGMNGGSVVWRKLGDAAGSCPGIRQHLSGNQYKGPM", "length": 438, "header": "tr|A0A5G2RBW1-1|A0A287ALS1_PIG Computationally mapped isoform of Coiled-coil domain containing 85A OS=Sus scrofa OX=9823 GN=CCDC85A PE=3 SV=1 CANONICAL=A0A287ALS1-1" }, "locus": { "chromosome": "3", "start_pos": 85164972, "end_pos": 84960110, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078063.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078063.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071672.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071672.1" } ] } }, { "isoform_ac": "F1SQL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALS1/entry#F1SQL3-1", "sequence": { "sequence": "MSKAAGGASAAAAESCPPTSAGQSAAAAVEDLSKVSDEELLQWSKEELIRCLRRAEAEKVSAMLDHSNLIREVNRRLQLHLGEIRGLKDINQKLQEDNQELRDLCCFLDDDRQKGKRVSREWQRLGRYTAGVMHKEVALYLQKLKELEVKQEEVVKENMELKELCVLLDEEKGAGCAGSRCSIDSQASLCQLTATSAPYVRDVGDGSSTSSTGSTDSPDHKHHASGGSPEHLQKPRGEGSPEHSKHRSTSPEHLQKPRAPGTPDHPKALKGPSPEHHKPLCKGSPEQQRHPHAGSSPETLPKHVLSGSPEHFQKHRPGGSPEHARHSGGSPEHLQKHALGGSLEHLPRARGTSPEHLKQHYGGSPDHKHVGGGGGGSGGGSREGTLRRQAQEDVSPHHRNVYSGMNESTLSYVRQLEARVRQLEEENRMLPQVVWRKLGDAAGSCPGIRQHLSGNQYKGPM", "length": 461, "header": "tr|F1SQL3-1|A0A287ALS1_PIG Computationally mapped isoform of Coiled-coil domain containing 85A OS=Sus scrofa OX=9823 GN=CCDC85A PE=3 SV=3 CANONICAL=A0A287ALS1-1" }, "locus": { "chromosome": "3", "start_pos": 85164972, "end_pos": 84960110, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009193.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009193.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008960.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008960.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF99", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF99" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALS1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALS1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 487, "end_pos": 489, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ALS1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 543, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ALS1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ALS1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 406, "end_pos": 408 }, { "start_pos": 441, 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AKF6-1", "uniprot_ac": "A0A287AKF6", "uniprot_id": "A0A287AKF6_PIG", "mass": { "chemical_mass": 43149.0, "monoisotopic_mass": 43149.0 }, "refseq": { "ac": "XP_003481475", "name": "cell adhesion molecule 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481475" }, "gene_names": [ { "name": "CADM3", "type": "recommended", "evidence": [ { "id": "A0A287AKF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF6" } ] }, { "name": "CADM3", "type": "synonym", "evidence": [ { "id": "XP_003481475", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481475" } ] } ], "protein_names": [ { "name": "Cell adhesion molecule 3", "type": "recommended", "evidence": [ { "id": "A0A287AKF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF6/entry#names_and_taxonomy" } ] }, { "name": "Immunoglobulin superfamily member 4B", "type": "synonym", "evidence": [ { "id": "A0A287AKF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF6/entry#names_and_taxonomy" } ] }, { "name": "Nectin-like protein 1", "type": "synonym", "evidence": [ { "id": "A0A287AKF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF6/entry#names_and_taxonomy" } ] }, { "name": "Synaptic cell adhesion molecule 3", "type": "synonym", "evidence": [ { "id": "A0A287AKF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF6/entry#names_and_taxonomy" } ] }, { "name": "TSLC1-like protein 1", "type": "synonym", "evidence": [ { "id": "A0A287AKF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF6/entry#names_and_taxonomy" } ] }, { "name": "cell adhesion molecule 3 isoform X2", "type": "synonym", 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Has both calcium-independent homophilic cell-cell adhesion activity and calcium-independent heterophilic cell-cell adhesion activity with IGSF4, NECTIN1 and NECTIN3. 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"Genome Annotation" ] }, { "id": "IPR003585", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003585", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157273", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157273", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ANVTCTV", "url": "https://omabrowser.org/oma/group/ANVTCTV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZQM3", "url": "https://www.orthodb.org/?gene=A0A286ZQM3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45889", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45889", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45889:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45889:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08205", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08205", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418990", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418990", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-420597", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-420597", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003481475", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481475", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZQM3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKF6", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF38-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF38-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAPSALPLLLLFACCWAPGGANLSQDDSQPWTSDETVVAGGTVVLKCQVKEHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVRSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQKPIITGYKSSLREKDTTTLNCQSSGSKPAAQLTWRKGDQELHGEPTRVQEDPNGKTFTVSSSVTFQVTQEDDGADIVCSVNHESLKGADRSTSQRIEVLYKPTAKIRPDPPHPREGQKLLLHCEGRGNPVPQQYLWEKEGSVPPLKMTQDSALIFPFLNKSDSGTYGCTATSNMGSYKAYYTLNVNDPSPVPSSSSTYHAIIGGIVAFIVFLLLILLIFLGHYLIRHKGTYLTHEAKGSDDAPDADTAIINAEGGQSGGDDKKEYFI", "length": 396, "header": "tr|A0A287AKF6-1|A0A287AKF6_PIG Isoform 1 of Cell adhesion molecule 3 OS=Sus scrofa OX=9823 GN=CADM3 PE=1 SV=1 CANONICAL=A0A287AKF6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZQM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF6/entry#A0A286ZQM3-1", "sequence": { "sequence": "MGAPSALPLLLLFACCWAPGGANLSQDGYWQEQNLELGTLASLDEAISSTVWSSPDMLASQDSQPWTSDETVVAGGTVVLKCQVKEHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVRSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQKPIITGYKSSLREKDTTTLNCQSSGSKPAAQLTWRKGDQELHGEPTRVQEDPNGKTFTVSSSVTFQVTQEDDGADIVCSVNHESLKGADRSTSQRIEVLYKPTAKIRPDPPHPREGQKLLLHCEGRGNPVPQQYLWEKEGSVPPLKMTQDSALIFPFLNKSDSGTYGCTATSNMGSYKAYYTLNVNDPSPVPSSSSTYHAIIGGIVAFIVFLLLILLIFLGHYLIRHKGTYLTHEAKGSDDAPDADTAIINAEGGQSGGDDKKEYFI", "length": 430, "header": "tr|A0A286ZQM3-1|A0A287AKF6_PIG Computationally mapped isoform of Cell adhesion molecule 3 OS=Sus scrofa OX=9823 GN=CADM3 PE=1 SV=1 CANONICAL=A0A287AKF6-1" }, "locus": { "chromosome": "4", "start_pos": 91259945, "end_pos": 91229533, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042275.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042275.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033904.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033904.1" } ] } }, { "isoform_ac": "A0A287AKF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF6/entry#A0A287AKF6-1", "sequence": { "sequence": "MGAPSALPLLLLFACCWAPGGANLSQDDSQPWTSDETVVAGGTVVLKCQVKEHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVRSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQKPIITGYKSSLREKDTTTLNCQSSGSKPAAQLTWRKGDQELHGEPTRVQEDPNGKTFTVSSSVTFQVTQEDDGADIVCSVNHESLKGADRSTSQRIEVLYKPTAKIRPDPPHPREGQKLLLHCEGRGNPVPQQYLWEKEGSVPPLKMTQDSALIFPFLNKSDSGTYGCTATSNMGSYKAYYTLNVNDPSPVPSSSSTYHAIIGGIVAFIVFLLLILLIFLGHYLIRHKGTYLTHEAKGSDDAPDADTAIINAEGGQSGGDDKKEYFI", "length": 396, "header": "tr|A0A287AKF6-1|A0A287AKF6_PIG Isoform 1 of Cell adhesion molecule 3 OS=Sus scrofa OX=9823 GN=CADM3 PE=1 SV=1 CANONICAL=A0A287AKF6-1" }, "locus": { "chromosome": "4", "start_pos": 91259945, "end_pos": 91229533, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053737.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053737.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044483.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044483.1" } ] } }, { "isoform_ac": "A0A5G2QF38-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF6/entry#A0A5G2QF38-1", "sequence": { "sequence": "MGAPSALPLLLLFACCWAPGGANLSQDDSQPWTSDETVVAGGTVVLKCQVKEHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVRSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQKPIITGYKSSLREKDTTTLNCQSSGSKPAAQLTWRKGDQELHGEPTRVQEDPNGKTFTVSSSVTFQVTQEDDGADIVCSVNHESLKGADRSTSQRIEVLYKPTAKIRPDPPHPREGQKLLLHCEGRGNPVPQQYLWEKEGSVPPLKMTQDSALIFPFLNKSDSGTYGCTATSNMGSYKAYYTLNVNDLSCPALLTIGNERKFLCPRAWSLADPPCPVLERPVLFISAFSADAWR", "length": 363, "header": "tr|A0A5G2QF38-1|A0A287AKF6_PIG Computationally mapped isoform of Cell adhesion molecule 3 OS=Sus scrofa OX=9823 GN=CADM3 PE=1 SV=1 CANONICAL=A0A287AKF6-1" }, "locus": { "chromosome": "4", "start_pos": 91259945, "end_pos": 91232445, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079356.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079356.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060647.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060647.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF38" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157273", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157273", "resource": "KEGG Pathway" }, { "id": "R-SSC-418990", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418990", "resource": "Reactome", "description": "Adherens junctions interactions" }, { "id": "R-SSC-420597", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-420597", "resource": "Reactome", "description": "Nectin/Necl trans heterodimerization" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M7P7-1", "protein_name": "Cell adhesion molecule 3", "gene_name": "CADM3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTSRSFAYVIGYFRRAILERFCDLISLSLCLSGYWQEQNLELGALAPLDEAISSTVWSSPDMLASQDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVKSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQKPIISGYKSSLREKDKTTLSCQSSGSKPAAQLTWRKGDQELHGESTRIQEDPNGKTFTVSSSVTFQVTREDDGADIVCSVNHESLKGADRSTAQRIEVLYTPTAKIRPDPPHPREGQKLLLHCEGRGNPVPQQYVWEKEGSVPPLKMAQESALIFPFLNKSDSGTYGCTATSNMGSYKAYYTLNVNDPSPVPSSSSTYHAIIGGIVAFIVFLLLILLIFLGHYLIRHKGTYLTHEAKGSDDAPDADTAIINAEGGQSGGDDKKEYFI", "length": 435 }, "evidence": [ { "id": "A0A287AKF6", "url": "https://omabrowser.org/oma/group/A0A287AKF6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q1WIM3-1", "protein_name": "Cell adhesion molecule 3", "gene_name": "Cadm3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAPSALPLLLLLACSWAPGGANLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVSSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQKPIITGYKSSLREKETATLNCQSSGSKPAAQLAWRKGDQELHGDQTRIQEDPNGKTFTVSSSVSFQVTRDDDGANVVCSVNHESLKGADRSTSQRIEVLYTPTAMIRPEPAHPREGQKLLLHCEGRGNPVPQQYVWVKEGSEPPLKMTQESALIFPFLNKSDSGTYGCTATSNMGSYTAYFTLNVNDPSPVPSSSSTYHAIIGGIVAFIVFLLLILLIFLGHYLIRHKGTYLTHEAKGSDDAPDADTAIINAEGGQSGGDDKKEYFI", "length": 396 }, "evidence": [ { "id": "A0A287AKF6", "url": "https://omabrowser.org/oma/group/A0A287AKF6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N126-1", "protein_name": "Cell adhesion molecule 3", "gene_name": "CADM3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"chromosome": "14", "start_pos": 136459137, "end_pos": 136421550, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042206.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042206.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033923.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033923.2" } ] } }, { "isoform_ac": "A0A287ANL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANL2/entry#A0A287ANL2-1", "sequence": { "sequence": "MVSKETSKCVLTTTATEVEPAACLALEMRYALDPNRQIKKRNKALQVRFKDICEAQNEQRDTQLASGQLGDKREAKPASYRAAYRKYMTVPARRSIPNVTKSTGVQTSPDLKKCYQTFPLDRKKGTLKGIAGADAFKSQNNGFVIDAKAKREEGPGEEARWGAGRVQKTTALVFHSDEHVNALDQPAGLNCADTCPSPEPRSPRDAPPRNATRPPSQEPHDQPHRKAKHDGASPDTEEPAPPAHGRVFKTEVAAVYAPSAKAPRALSHSAPSSEWSLCPAADQERRRAAQANGLQAPPGSALACAPPTQCLSPECSEAPLQTQAPPGQEHQPCPPALAVGDECQQIVPHTEVVDLKAQLQMMENLISSSQETIKVLLGVIQELEKGEAHREGVELDFKQQEDKLQPVLRKLHPFEETQVTPSPYSQEIYSSTPKQKSKTESKKHGRWKLWFL", "length": 452, "header": "tr|A0A287ANL2-1|A0A287ANL2_PIG Isoform 1 of Inhibitory synaptic factor 2A OS=Sus scrofa OX=9823 GN=INSYN2A PE=4 SV=2 CANONICAL=A0A287ANL2-1" }, "locus": { "chromosome": "14", "start_pos": 136459137, "end_pos": 136421550, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063717.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063717.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045600.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045600.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZQM8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQM8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANL2", "url": "https://www.uniprot.org/uniprotkb/A0A287ANL2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "inhibitory postsynaptic potential", "id": "GO:0060080", "url": 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"common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "APBB1", "url": "https://www.uniprot.org/uniprotkb/A0A287APQ2", "locus": { "chromosome": "9", "start_pos": 3324037, "end_pos": 3303112, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014628", "url": "https://www.ensembl.org/id/ENSSSCG00000014628" } ] } } ], "crossref": [ { "id": "A0A287APQ2", "url": "https://alphafold.ebi.ac.uk/entry/A0A287APQ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014628", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014628", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00201", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00201", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01271", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01271", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01272", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01272", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519163", "url": "https://www.ncbi.nlm.nih.gov/gene/100519163", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039576", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039576", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZSV5", "url": "https://www.orthodb.org/?gene=A0A286ZSV5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14058", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14058", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14058:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14058:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00397", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00397", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5693565", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693565", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020918002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918002", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZRP5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZRP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZSV5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZSV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSV5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APQ2", "url": "https://www.uniprot.org/uniprotkb/A0A287APQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1NQN0", "url": "https://www.uniprot.org/uniprotkb/A0A8D1NQN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1NQN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1NQN0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F723", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F723", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F723-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F723-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMN5", "url": "https://www.uniprot.org/uniprotkb/F1RMN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMN5-1", "url": "https://www.uniprot.org/uniprotkb/F1RMN5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVPSSLSQSAINANSHGGPALSLPLPLHAAHNQLLNAKLQATAVGPKDLRSAMGEGGGPEPGPANAKWLKEGQNQLRRAATAHRDQNRNVTLTLAEEASQEPETAPLGPKGLMHLYSELELSAHNAANRGLRGPGLIISAQEQGPDEGEEKAAGEAEEDDEEEEEEEEEDLSSPPGLPEPLESVEVPAGPQALADGPREHSKSASLLFGMRNSAASDEDSSWATLSQGSPSYGSPEDADSFWNRNAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPSQSQGSSPREESQLTWTGFAHGEGFDDGEFWKDEPSEEAPMDLGLKEPEERVLPFPAQSLSPEPLPQEEEKLPARNANPGAKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPMSGGWGEGKDLLLQLEDETLKLVEPHSQALLHAQPIVSIRVWGVGRDSGRERDFAYVARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKIMAERRNARCLVNGLSLDHSKLVDVPFQVEFPAPKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILHQQTEAVLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAASLSEAVQAACMLRYQKCLDARSQASTSCLPAPPAESVARRVGWTVRRGVQSLWGSLKPKRLGSHTP", "length": 711, "header": "tr|A0A287APQ2-1|A0A287APQ2_PIG Isoform 1 of Amyloid beta protein binding family B member 1 OS=Sus scrofa OX=9823 GN=APBB1 PE=1 SV=3 CANONICAL=A0A287APQ2-1" }, "isoforms": [ { "isoform_ac": "A0A286ZRP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APQ2/entry#A0A286ZRP5-1", "sequence": { "sequence": "MSQPHTSLCPWHGSAKAMSVPSSLSQSAINANSHGGPALSLPLPLHAAHNQLLNAKLQATAVGPKDLRSAMGEGGGPEPGPANAKWLKEGQNQLRRAATAHRDQNRNVTLTLAEEASQEPETAPLGPKGLMHLYSELELSAHNAANRGLRGPGLIISAQEQGPDEGEEKAAGEAEEDDEEEEEEEEEDLSSPPGLPEPLESVEVPAGPQALADGPREHSKSASLLFGMRNSAASDEDSSWATLSQGSPSYGSPEDADSFWNRNAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPSQSQGSSPREESQLTWTGFAHGEGFDDGEFWKDEPSEEAPMDLGLKEPEERVLPFPAQSLSPEPLPQEEEKLPARNANPGAKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPMSGGWGEGKDLLLQLEDETLKLVEPHSQALLHAQPIVSIRVWGVGRDSGRDFAYVARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKAATFALQDIMAERRNARCLVNGLSLDHSKLVDVPFQVEFPAPKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILHQQTEAVLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAASLSEAVQAACMVSAGSGAAAVPSPQGRLQRDCPPPLCSSATRSVWMPAPRPPPPASRHPPLSLLPGA", "length": 735, "header": "tr|A0A286ZRP5-1|A0A287APQ2_PIG Computationally mapped isoform of Amyloid beta protein binding family B member 1 OS=Sus scrofa OX=9823 GN=APBB1 PE=1 SV=2 CANONICAL=A0A287APQ2-1" }, "locus": { "chromosome": "9", "start_pos": 3323348, "end_pos": 3310637, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039147.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039147.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034308.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034308.2" } ] } }, { "isoform_ac": "A0A286ZSV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APQ2/entry#A0A286ZSV5-1", "sequence": { "sequence": "MSVPSSLSQSAINANSHGGPALSLPLPLHAAHNQLLNAKLQATAVGPKDLRSAMGEGGGPEPGPANAKWLKEGQNQLRRAATAHRDQNRNVTLTLAEEASQEPETAPLGPKGLMHLYSELELSAHNAANRGLRGPGLIISAQEQGPDEGEEKAAGEAEEDDEEEEEEEEEDLSSPPGLPEPLESVEVPAGPQALADGPREHSKSASLLFGMRNSAASDEDSSWATLSQGSPSYGSPEDADSFWNRNAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPSQSQGSSPREESQLTWTGFAHGEGFDDGEFWKDEPSEEAPMDLGLKEPEERVLPFPAQSLSPEPLPQEEEKLPARNANPGAKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPMSGGWGEGKDLLLQLEDETLKLVEPHSQALLHAQPIVSIRVWGVGRDSGRWGRGPGSGAGLSQQSERASSLTLFFASLVLPDPERGSMLIRTVPLPSPGADAAQPPSSLVVPCPLLAALLTHPPLACSPVYPLARRQHLLDATPRAEALEELRWTGVGGRGGTRLSTRWPWETLRRPSPNRDFAYVARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKIMAERRNARCLVNGLSLDHSKLVDVPFQVEFPAPKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILHQQTEAVLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAASLSEAVQAACMLRYQKCLDARSQASTSCLPAPPAESVARRVGWTVRRGVQSLWGSLKPKRLGSHTP", "length": 840, "header": "tr|A0A286ZSV5-1|A0A287APQ2_PIG Computationally mapped isoform of Amyloid beta protein binding family B member 1 OS=Sus scrofa OX=9823 GN=APBB1 PE=1 SV=1 CANONICAL=A0A287APQ2-1" }, "locus": { "chromosome": "9", "start_pos": 3323425, "end_pos": 3311025, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063678.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063678.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034717.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034717.2" } ] } }, { "isoform_ac": "A0A287APQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APQ2/entry#A0A287APQ2-1", "sequence": { "sequence": "MSVPSSLSQSAINANSHGGPALSLPLPLHAAHNQLLNAKLQATAVGPKDLRSAMGEGGGPEPGPANAKWLKEGQNQLRRAATAHRDQNRNVTLTLAEEASQEPETAPLGPKGLMHLYSELELSAHNAANRGLRGPGLIISAQEQGPDEGEEKAAGEAEEDDEEEEEEEEEDLSSPPGLPEPLESVEVPAGPQALADGPREHSKSASLLFGMRNSAASDEDSSWATLSQGSPSYGSPEDADSFWNRNAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPSQSQGSSPREESQLTWTGFAHGEGFDDGEFWKDEPSEEAPMDLGLKEPEERVLPFPAQSLSPEPLPQEEEKLPARNANPGAKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPMSGGWGEGKDLLLQLEDETLKLVEPHSQALLHAQPIVSIRVWGVGRDSGRERDFAYVARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKIMAERRNARCLVNGLSLDHSKLVDVPFQVEFPAPKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILHQQTEAVLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAASLSEAVQAACMLRYQKCLDARSQASTSCLPAPPAESVARRVGWTVRRGVQSLWGSLKPKRLGSHTP", "length": 711, "header": "tr|A0A287APQ2-1|A0A287APQ2_PIG Isoform 1 of Amyloid beta protein binding family B member 1 OS=Sus scrofa OX=9823 GN=APBB1 PE=1 SV=3 CANONICAL=A0A287APQ2-1" }, "locus": { "chromosome": "9", "start_pos": 3323425, "end_pos": 3311025, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052829.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052829.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046011.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046011.3" } ] } }, { "isoform_ac": "A0A8D1NQN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APQ2/entry#A0A8D1NQN0-1", "sequence": { "sequence": "TSAMFSQDFFLAIILQDGSPDSFWNRNAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPSQSQGSSPREESQLTWTGFAHGEGFDDGEFWKDEPSEEAPMDLGLKEPEERVLPFPAQSLSPEPLPQEEEKLPARNANPGAKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPMSGGWGEGKDLLLQLEDETLKLVEPHSQALLHAQPIVSIRVWGVGRDSGRERDFAYVARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKIMAERRNARCLVNGLSLDHSKLVDVPFQVEFPAPKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILHQQTEAVLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAASLSEAVQAACMLRYQKCLDARSQASTSCLPAPPAESVARRVGWTVRRGVQSLWGSLKPKRLGSHTP", "length": 492, "header": "tr|A0A8D1NQN0-1|A0A287APQ2_PIG Computationally mapped isoform of Amyloid beta protein binding family B member 1 OS=Sus scrofa OX=9823 GN=APBB1 PE=1 SV=1 CANONICAL=A0A287APQ2-1" }, "locus": { "chromosome": "9", "start_pos": 3323425, "end_pos": 3316301, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059493.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059493.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058819.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058819.3" } ] } }, { "isoform_ac": "A0A8W4F723-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APQ2/entry#A0A8W4F723-1", "sequence": { "sequence": "MSVPSSLSQSAINANSHGGPALSLPLPLHAAHNQLLNAKLQATAVGPKDLRSAMGEGGGPEPGPANAKWLKEGQNQLRRAATAHRDQNRNVTLTLAEEASQEPETAPLGPKGLMHLYSELELSAHNAANRGLRGPGLIISAQEQGPDEGEEKAAGEAEEDDEEEEEEEEEDLSSPPGLPEPLESVEVPAGPQALADGPREHSKSASLLFGMRNSAASDEDSSWATLSQGSPSYGSPEDADSFWNRNAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPSQSQGSSPREESQLTWTGFAHGEGFDDGEFWKDEPSEEAPMDLGLKEPEERVLPFPAQSLSPEPLPQEEEKLPARNANPGAKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPMSGGWGEGKDLLLQLEDETLKLVEPHSQALLHAQPIVSIRVWGVGRDSGRWGRGPGSGAGLSQQSERASSLTLFFASLVLPDPERGSMLIRTVPLPSPGADAAQPPSSLVVPCPLLAALLTHPPLACSPVYPLARRQHLLDATPRAEALEELRWTGVGGRGGTRLSTRWPWETLRRPSPNRDFAYVARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKAPAPGLAATFALQDIMAERRNARCLVNGLSLDHSKLVDVPFQVEFPAPKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILHQQTEAVLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAASLSEAVQAACMLRYQKCLDARSQASTSCLPAPPAESVARRVGWTVRRGVQSLWGSLKPKRLGSHTP", "length": 854, "header": "tr|A0A8W4F723-1|A0A287APQ2_PIG Computationally mapped isoform of Amyloid beta protein binding family B member 1 OS=Sus scrofa OX=9823 GN=APBB1 PE=1 SV=1 CANONICAL=A0A287APQ2-1" }, "locus": { "chromosome": "9", "start_pos": 3323425, "end_pos": 3311025, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103816.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103816.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075031.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075031.1" } ] } }, { "isoform_ac": "F1RMN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APQ2/entry#F1RMN5-1", "sequence": { "sequence": "MADRGRTRLFSWENSSRATQGSAKAMSVPSSLSQSAINANSHGGPALSLPLPLHAAHNQLLNAKLQATAVGPKDLRSAMGEGGGPEPGPANAKWLKEGQNQLRRAATAHRDQNRNVTLTLAEEASQEPETAPLGPKGLMHLYSELELSAHNAANRGLRGPGLIISAQEQGPDEGEEKAAGEAEEDDEEEEEEEEEDLSSPPGLPEPLESVEVPAGPQALADGPREHSKSASLLFGMRNSAASDEDSSWATLSQGSPSYGSPEDADSFWNRNAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPSQSQGSSPREESQLTWTGFAHGEGFDDGEFWKDEPSEEAPMDLGLKEPEERVLPFPAQSLSPEPLPQEEEKLPARNANPGAKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPMSGGWGEGKDLLLQLEDETLKLVEPHSQALLHAQPIVSIRVWGVGRDSGRDFAYVARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKAATFALQDIMAERRNARCLVNGLSLDHSKLVDVPFQVEFPAPKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILHQQTEAVLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAASLSEAVQAACMLRYQKCLDARSQASTSCLPAPPAESVARRVGWTVRRGVQSLWGSLKPKRLGSHTP", "length": 742, "header": "tr|F1RMN5-1|A0A287APQ2_PIG Computationally mapped isoform of Amyloid beta protein binding family B member 1 OS=Sus scrofa OX=9823 GN=APBB1 PE=1 SV=4 CANONICAL=A0A287APQ2-1" }, "locus": { "chromosome": "9", "start_pos": 3323425, "end_pos": 3310840, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015979.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015979.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015558.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015558.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1NQN0", "url": "https://www.uniprot.org/uniprotkb/A0A8D1NQN0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5693565", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693565", "resource": "Reactome", "description": "Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287APQ2", "url": "https://www.uniprot.org/uniprotkb/A0A287APQ2" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ 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"https://www.uniprot.org/uniprotkb/A0A286ZT19" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8M2B9S8-1", "protein_name": "TLC domain-containing protein 4 isoform X1", "gene_name": "tlcd4a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAEGMSVKHLLYFSPGAWGRVAMDPFSQLILLISVVSFFFFQWLFHSVSPWASSRISPGFLKLTHKQKIEWNSRTVSTLHALLVGLFCLYILFFDEAVNQDPVWGDPTLVKINVSITTGYLISDLLLIFYYWRAIGDKFFVIHHLAALYAYYYVLGQGMLPYFANFRLLAEFSTPCVNQRWFFEVLGYPKSSRPNMANGVLMAAVFFLVRIAVMPVYYSRMCSVYGTEAFYRVSFGGRSAWIFSSICLDIMNVMWMHKIFRGCYKVLQSSRKSKAESQENGKTD", "length": 284 }, "evidence": [ { "id": "A0A287AN10", "url": "https://omabrowser.org/oma/group/A0A287AN10/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0ZGI5-1", "protein_name": "TLC domain containing 4", "gene_name": "TLCD4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASFSNLTIGIALASFTIFQLLFHVLSSWVSTRITPGFSNLSQKRKIEWNSRTVSTFHALVVGGFCLYILLYDEAVNADHLWGDPSIVKLNIAITTGYLISDLLLIICYWKAIGDKFFVVHHLAALYAYYFVLSKGLLAYFGNFRLLAEFSTPFVNQRWFFEVLGYPKSSKANMINGVLMTVVFFVVRIAVMPMYYSRVFSSFGTEGFQRLGFAAQSAWIISSVVLDVMNLMWMAKITKGCYKVICLVGREEAKTHKNGKSD", "length": 262 }, "evidence": [ { "id": "A0A287AN10", "url": "https://omabrowser.org/oma/group/A0A287AN10/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7J9G9-1", "protein_name": "TLC domain-containing protein 4", "gene_name": "LOC100772772", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEANTKLVIGIVCSSFVIFQILFHFVSYWFSAKVSPGYNSLSIEKKIEWNSRVVSTCHSLLVGTYGLYLFLFDEPTIADPLWGDPACVKLNIATASGYLVSDLLIILLNWKVIGDKFFVIHHCAALTAYFLMLRDGVLAYIANFRLLAELSSPFVNQRWFFETLKYPKFSKANVINGILMTVVFFVVRIIAIPPLYFFIYSVYGTEAFIRLGFTIQFTWITTCLILDVMNVMWMIKITKGCIKVISLIRQEKAKNSLQNGKLD", "length": 263 }, "evidence": [ { "id": "A0A287AN10", "url": "https://omabrowser.org/oma/group/A0A287AN10/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4AAE5-1", "protein_name": "TLC domain containing 4", "gene_name": "Tlcd4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEANTNVVIGTVCCSFVTFQLLFHFISCWFSARVSLGYNSLSTEKKIEWNSRVVSTCHSMLVGIFGLYLFFFDEATIADPLWGDPSLVKINISTASGYLISDLLIILFNWKVIGDKFFIIHHCAGLIAYYFVLKIGVLAYIANFRLLAELSSPFVNQRWFFEVLKYPKFSKVNVINGILMTVVFFIVRIIAIPPMYFYVYSVYGTEPYIRLGSVVHFVWISSCIVLDVMNIMWMIKITKGCMKVISLIRQEKAKDSLQNGKLD", "length": 263 }, "evidence": [ { "id": "A0A287AN10", "url": "https://omabrowser.org/oma/group/A0A287AN10/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1B7S9-1", "protein_name": "TLC domain containing 4", "gene_name": "TLCD4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDTNTILLISTCFASFFTFQIIFHVVSYWFSAKISPGFNNLNFKKKIEWNSRVVSTCHSLVVGLVGLYIFLFDEAGIADPLWGDTSLGKVNVAIASGYLVSDLLILIWYWKVIGDKYFVIHHCTALYAYHFVLNDGVLVYVGNFRLLAELSSPFVNQRWFFEALKYPKFSKANVINGILMTVVFFVVRIASIPPYYGYMYSVFGTEAYMRLGFLIQFSWISTCVVLDVMNVMWMIKISKGCIKVISLLRQEKARKSLQNGKLD", "length": 263 }, "evidence": [ { "id": "A0A287AN10", "url": "https://omabrowser.org/oma/group/A0A287AN10/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47153-1", "protein_name": "Topoisomerase I damage affected protein 4", "gene_name": "TDA4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MNANSTTTAIGLTSPFEKLSFFPHSSNLILAHLHEIIFSFVFYQLAFSVVAPFLNKVVFRKHYTTIRDPLLKIDFNVHTVSMIQAVVSNTVLLPTLTTPMHYNVVTYTDSYSSMVSSLSAGYFIWDLTMCVRYFKLYGLEFTGHAIGSVYVMLLSLRPFCQPWIGRFLIYEASTPFVNINWFIMQCNAKSKNSIPLWFNVVNGLLLMTVFFVVRICWGSIASALLFRQMWKVRDELPKFSAVTMMSLNIFMNLLNVLWFKKMIRIAKKLAKPAPTSKLD", "length": 279 }, "evidence": [ { "id": "A0A287AN10", "url": "https://omabrowser.org/oma/group/A0A287AN10/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q8CGF5-1", "protein_name": "TLC domain-containing protein 4", "gene_name": "Tlcd4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEASTKAAVGSGAMEASTKAVICTVCSSFVVFQILFHFVSYWFSARVSSGYNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLFFFDEATITDPLWGDPTYVNINIATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLLAELSSPFVNQRWFFEALKYPKFSKANVINGILMTVVFFIVRIISIPPMYFFLYSVYGTEPYIRFGFVIQSVWIVTCVILDVMNIMWMIKITKGCIKVISLIRQEKAKDSLQNGKLD", "length": 276 }, "evidence": [ { "id": "A0A287AN10", "url": "https://omabrowser.org/oma/group/A0A287AN10/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96MV1-1", "protein_name": "TLC domain-containing protein 4", "gene_name": "TLCD4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEINTKLLISVTCISFFTFQLLFYFVSYWFSAKVSPGFNSLSFKKKIEWNSRVVSTCHSLVVGIFGLYIFLFDEATKADPLWGGPSLANVNIAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAELSSPFVNQRWFFEALKYPKFSKAIVINGILMTVVFFIVRIASMLPHYGFMYSVYGTEPYIRLGVLIQLSWVISCVVLDVMNVMWMIKISKGCIKVISHIRQEKAKNSLQNGKLD", "length": 263 }, "evidence": [ { "id": "A0A287AN10", "url": "https://omabrowser.org/oma/group/A0A287AN10/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN10", "url": "https://www.uniprot.org/uniprotkb/A0A287AN10" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN10", "url": "https://www.uniprot.org/uniprotkb/A0A287AN10" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid homeostasis", "id": "GO:0055088", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055088", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN10", "url": "https://www.uniprot.org/uniprotkb/A0A287AN10" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AN10-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 263, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AN10-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AN10" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AN10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AN10" }, { "id": "PS50922", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50922" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TLC", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 246, "start_aa": "Lys", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX2/entry#names_and_taxonomy" } ] }, { "name": "SAGA-associated factor 29", "type": "synonym", "evidence": [ { "id": "XP_020943689", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943689" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AHX2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SGF29", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX2", "locus": { "chromosome": "3", "start_pos": 18354799, "end_pos": 18387856, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022778", "url": "https://www.ensembl.org/id/ENSSSCG00000022778" } ] } } ], "crossref": [ { "id": "A0A287AHX2", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AHX2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022778", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022778", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20393", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20393", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20394", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20394", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627492", "url": "https://www.ncbi.nlm.nih.gov/gene/100627492", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010750", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010750", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037802", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037802", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047287", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047287", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047288", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047288", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627492", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627492", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EPTYIAK", "url": "https://omabrowser.org/oma/group/EPTYIAK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AHX2", "url": "https://www.orthodb.org/?gene=A0A287AHX2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21539", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21539", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21539:SF0", "url": 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"MALVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLRGLYTTAKADAEAECNILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAKPGDKVAARVKAVDGDEQWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRIIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHTPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEPKKK", "length": 293, "header": "tr|A0A287AHX2-1|A0A287AHX2_PIG Isoform 1 of SAGA-associated factor 29 OS=Sus scrofa OX=9823 GN=SGF29 PE=1 SV=1 CANONICAL=A0A287AHX2-1" }, "isoforms": [ { "isoform_ac": "A0A287AHX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX2/entry#A0A287AHX2-1", "sequence": { "sequence": "MALVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLRGLYTTAKADAEAECNILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAKPGDKVAARVKAVDGDEQWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRIIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHTPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEPKKK", "length": 293, "header": "tr|A0A287AHX2-1|A0A287AHX2_PIG Isoform 1 of SAGA-associated factor 29 OS=Sus scrofa OX=9823 GN=SGF29 PE=1 SV=1 CANONICAL=A0A287AHX2-1" }, "locus": { "chromosome": "3", "start_pos": 18369306, "end_pos": 18354892, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044253.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044253.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043480.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043480.1" } ] } }, { "isoform_ac": "I3LMG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX2/entry#I3LMG8-1", "sequence": { "sequence": "MALVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLRGLYTTAKADAEAECNILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAKPGDKVAARVKAVDGDEQWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRIIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHTPPQRVRRLPRVQEPGPADLTGHRVIFPLPSPSSSLTASLPFLFCLVRPGTPGGSASQSSSLQPQRDLTLPGPSSLLC", "length": 328, "header": "tr|I3LMG8-1|A0A287AHX2_PIG Computationally mapped isoform of SAGA-associated factor 29 OS=Sus scrofa OX=9823 GN=SGF29 PE=1 SV=3 CANONICAL=A0A287AHX2-1" }, "locus": { "chromosome": "3", "start_pos": 18369306, "end_pos": 18355471, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030661.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030661.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025289.3", "url": "https://www.ensembl.org/id/ENSSSCP00000025289.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LMG8", "url": "https://www.uniprot.org/uniprotkb/I3LMG8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627492", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627492", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P0C606-1", "protein_name": "SAGA-associated factor 29", "gene_name": "Sgf29", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"A0A287AQ03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ03/entry#names_and_taxonomy" } ] }, { "name": "cadherin-16 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020949682", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949682" } ] } ], "function": [ { "annotation": "Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R114", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R114#function" }, { "database": "UniProtKB", "id": "ARBA00037319", "url": "https://www.uniprot.org/uniprotkb/ARBA00037319#function" }, { "database": "UniProtKB", "id": "I3LSX8", "url": "https://www.uniprot.org/uniprotkb/I3LSX8#function" }, { "database": "UniProtKB", "id": "A0A287ALK8", "url": "https://www.uniprot.org/uniprotkb/A0A287ALK8#function" }, { "database": "UniProtKB", "id": "A0A287AQ03", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ03#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AQ03", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ03" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDH16", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ03", "locus": { "chromosome": "6", "start_pos": 27589184, "end_pos": 27598987, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022721", "url": "https://www.ensembl.org/id/ENSSSCG00000022721" } ] } } ], "crossref": [ { "id": "A0A287AQ03", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AQ03", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022721", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022721", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100623412", "url": "https://www.ncbi.nlm.nih.gov/gene/100623412", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623412", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623412", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "INLPTVC", "url": "https://omabrowser.org/oma/group/INLPTVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3LSX8", "url": "https://www.orthodb.org/?gene=I3LSX8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027:SF424", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027:SF424", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020949682", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949682", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ALK8", "url": "https://www.uniprot.org/uniprotkb/A0A287ALK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALK8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQ03", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQ03-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ03-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDE3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDE3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R114", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R114", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R114-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R114-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LSX8", "url": "https://www.uniprot.org/uniprotkb/I3LSX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LSX8-1", "url": "https://www.uniprot.org/uniprotkb/I3LSX8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVPAWLWLLCLFVPQAFPGAQPAELYVEVPENYGGNFPLYLTKLALPREEAGGQIVLSGNSGMAAAGPFAVDQESGFLMVTMALDREEQAEYQLQVTLETEDGRVLWGPQPVLVHVKDENDQVPHFSQAIYTAQLSRGTRPGTPFFFLEASDGDEPGTANSDLRFHILNQAPAQPSPDMFQLEPQLGALALSPKGSISLDQALEGPYQLLVQVKDMGDQVSGHQATATIDVSIVENTWVPLDPIHLAENCQVPYPHHIAQVHWSGGNVRYHLESQPPGPFEVDTEGKLYVTRELDREAQAEYLLQVWAQNTRGEDYADPLELHVVVIDENDNAPVCPPRGPPVNIPELSPPGTMVARLSVEDVDAPGSPNSHVVYRLLSPEPEEGAERSAFKLDSTSGSVTLGAAPLQAGQNILLQVLAIDLGGTEGGLSSTCEIAVTITDINDHAPEFTASQIAPISIPEDTEPGTLVTTLMATDADLEPTFRLMDFAIEEGNIEGTFGLDWEPDSGHVQLRLLKNLSYEAAPSHKLVVVVRSLAELVGPGPGPGATATVTVLVERVLPPLKLDQENYEVSVPVSAPAGSLLLTIQPAADPMSSPLRFSLVNDSEGWLDIKEASGEVHTARPLQGAQPGDMYTVLVAAQVADEPTLSTSATLMIHFLKAPSAPTPTLAPLAPVPTRHLCTPRQDHGVVVSGLREDPDLAGGHGPYSFALGPNPTVQRDWRLRALNGSHAYLTLGLHWVEPREHVVPVVVSHDAQMWQILVRVIVCRCNVEGQCMRKVGRMKGMPTKLSAVGILVGTLIAIGIFLILIFTHLTLARKKDLDQPADSVPLKAAV", "length": 833, "header": "tr|A0A287AQ03-1|A0A287AQ03_PIG Isoform 1 of Cadherin-16 OS=Sus scrofa OX=9823 GN=CDH16 PE=1 SV=1 CANONICAL=A0A287AQ03-1" }, "isoforms": [ { "isoform_ac": "A0A287ALK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ03/entry#A0A287ALK8-1", "sequence": { "sequence": "MSNLGGWAGPGLLLWAQRCFPLLSKCGWPAYLLKCPPCPVLPGPAWPARPVERILSPGGWTKEARLGHQRAFPGAQPAELYVEVPENYGGNFPLYLTKLALPREEAGGQIVLSGNSGMAAAGPFAVDQESGFLMVTMALDREEQAEYQLQVTLETEDGRVLWGPQPVLVHVKDENDQVPHFSQAIYTAQLSRGTRPGTPFFFLEASDGDEPGTANSDLRFHILNQAPAQPSPDMFQLEPQLGALALSPKGSISLDQALEGPYQLLVQVKDMGDQVSGHQATATIDVSIVENTWVPLDPIHLAENCQVPYPHHIAQVHWSGGNVRYHLESQPPGPFEVDTEGKLYVTRELDREAQAEYLLQVWAQNTRGEDYADPLELHVVVIDENDNAPVCPPRGPPVNIPELSPPGTMVARLSVEDVDAPGSPNSHVVYRLLSPEPEEGAERSAFKLDSTSGSVTLGAAPLQAGQNILLQVLAIDLGGTEGGLSSTCEIAVTITDINDHAPEFTASQIAPISIPEDTEPGTLVTTLMATDADLEPTFRLMDFAIEEGNIEGTFGLDWEPDSGHVQLRLLKNLSYEAAPSHKLVVVVRSLAELVGPGPGPGATATVTVLVERVLPPLKLDQENYEVSVPVSAPAGSLLLTIQPAADPMSSPLRFSLVNDSEGWLDIKEASGEVHTARPLQGAQPGDMYTVLVAAQVADEPTLSTSATLMIHFLKAPSAPTPTLAPLAPVPTRHLCTPRQDHGVVVSGLREDPDLAGGHGPYSFALGPNPTVQRDWRLRALNVIVCRCNVEGQCMRKVGRMKGMPTKLSAVGILVGTLIAIGIFLILIFTHLTLARKKDLDQPADSVPLKAAV", "length": 852, "header": "tr|A0A287ALK8-1|A0A287ALK8_PIG Computationally mapped isoform of Cadherin-16 OS=Sus scrofa OX=9823 GN=CDH16 PE=1 SV=1 CANONICAL=A0A287AQ03-1" }, "locus": { "chromosome": "6", "start_pos": 27598987, "end_pos": 27589436, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058977.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058977.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044783.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044783.1" } ] } }, { "isoform_ac": "A0A287AQ03-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ03/entry#A0A287AQ03-1", "sequence": { "sequence": "MVPAWLWLLCLFVPQAFPGAQPAELYVEVPENYGGNFPLYLTKLALPREEAGGQIVLSGNSGMAAAGPFAVDQESGFLMVTMALDREEQAEYQLQVTLETEDGRVLWGPQPVLVHVKDENDQVPHFSQAIYTAQLSRGTRPGTPFFFLEASDGDEPGTANSDLRFHILNQAPAQPSPDMFQLEPQLGALALSPKGSISLDQALEGPYQLLVQVKDMGDQVSGHQATATIDVSIVENTWVPLDPIHLAENCQVPYPHHIAQVHWSGGNVRYHLESQPPGPFEVDTEGKLYVTRELDREAQAEYLLQVWAQNTRGEDYADPLELHVVVIDENDNAPVCPPRGPPVNIPELSPPGTMVARLSVEDVDAPGSPNSHVVYRLLSPEPEEGAERSAFKLDSTSGSVTLGAAPLQAGQNILLQVLAIDLGGTEGGLSSTCEIAVTITDINDHAPEFTASQIAPISIPEDTEPGTLVTTLMATDADLEPTFRLMDFAIEEGNIEGTFGLDWEPDSGHVQLRLLKNLSYEAAPSHKLVVVVRSLAELVGPGPGPGATATVTVLVERVLPPLKLDQENYEVSVPVSAPAGSLLLTIQPAADPMSSPLRFSLVNDSEGWLDIKEASGEVHTARPLQGAQPGDMYTVLVAAQVADEPTLSTSATLMIHFLKAPSAPTPTLAPLAPVPTRHLCTPRQDHGVVVSGLREDPDLAGGHGPYSFALGPNPTVQRDWRLRALNGSHAYLTLGLHWVEPREHVVPVVVSHDAQMWQILVRVIVCRCNVEGQCMRKVGRMKGMPTKLSAVGILVGTLIAIGIFLILIFTHLTLARKKDLDQPADSVPLKAAV", "length": 833, "header": "tr|A0A287AQ03-1|A0A287AQ03_PIG Isoform 1 of Cadherin-16 OS=Sus scrofa OX=9823 GN=CDH16 PE=1 SV=1 CANONICAL=A0A287AQ03-1" }, "locus": { "chromosome": "6", "start_pos": 27597848, "end_pos": 27589436, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066312.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066312.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045957.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045957.1" } ] } }, { "isoform_ac": "A0A5G2QDE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ03/entry#A0A5G2QDE3-1", "sequence": { "sequence": "MVPAWLWLLCLFVPQAFPGAQPAELYVEVPENYGGNFPLYLTKLALPREEAGGQIVLSGNSGMAAAGPFAVDQESGFLMVTMALDREEQAEYQLQVTLETEDGRVLWGPQPVLVHVKDENDQVSGHQATATIDVSIVENTWVPLDPIHLAENCQVPYPHHIAQVHWSGGNVRYHLESQPPGPFEVDTEGKLYVTRELDREAQAEYLLQVWAQNTRGEDYADPLELHVVVIDENDNAPVCPPRGPPVNIPELSPPGTMVARLSVEDVDAPGSPNSHVVYRLLSPEPEEGAERSAFKLDSTSGSVTLGAAPLQAGQNILLQVLAIDLGGTEGGLSSTCEIAVTITDINDHAPEFTASQIAPISIPEDTEPGTLVTTLMATDADLEPTFRLMDFAIEEGNIEGTFGLDWEPDSGHVQLRLLKNLSYEAAPSHKLVVVVRSLAELVGPGPGPGATATVTVLVERVLPPLKLDQENYEVSVPVSAPAGSLLLTIQPAADPMSSPLRFSLVNDSEGWLDIKEASGEVHTARPLQGAQPGDMYTVLVAAQVADEPTLSTSATLMIHFLKAPSAPTPTLAPLAPVPTRHLCTPRQDHGVVVSGLREDPDLAGGHGPYSFALGPNPTVQRDWRLRALNGSHAYLTLGLHWVEPREHVVPVVVSHDAQMWQILVRVIVCRCNVEGQCMRKVGRMKGMPTKLSAVGILVGTLIAIGIFLILIFTHLTLARKKDLDQPADSVPLKAAV", "length": 736, "header": "tr|A0A5G2QDE3-1|A0A287AQ03_PIG Computationally mapped isoform of Cadherin-16 OS=Sus scrofa OX=9823 GN=CDH16 PE=1 SV=1 CANONICAL=A0A287AQ03-1" }, "locus": { "chromosome": "6", "start_pos": 27597848, "end_pos": 27589436, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072266.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072266.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062151.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062151.1" } ] } }, { "isoform_ac": "A0A5G2R114-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ03/entry#A0A5G2R114-1", "sequence": { "sequence": "MVPAWLWLLCLFVPQVTLETEDGRVLWGPQPVLVHVKDENDQVPHFSQAIYTAQLSRGTRPGTPFFFLEASDGDEPGTANSDLRFHILNQAPAQPSPDMFQLEPQLGALALSPKGSISLDQALEGPYQLLVQVKDMGDQVSGHQATATIDVSIVENTWVPLDPIHLAENCQVPYPHHIAQVHWSGGNVRYHLESQPPGPFEVDTEGKLYVTRELDREAQAEYLLQVWAQNTRGEDYADPLELHVVVIDENDNAPVCPPRGPPVNIPELSPPGTMVARLSVEDVDAPGSPNSHVVYRLLSPEPEEGAERSAFKLDSTSGSVTLGAAPLQAGQNILLQVLAIDLGGTEGGLSSTCEIAVTITDINDHAPEFTASQIAPISIPEDTEPGTLVTTLMATDADLEPTFRLMDFAIEEGNIEGTFGLDWEPDSGHVQLRLLKNLSYEAAPSHKLVVVVRSLAELVGPGPGPGATATVTVLVERVLPPLKLDQENYEVSVPVSAPAGSLLLTIQPAADPMSSPLRFSLVNDSEGWLDIKEASGEVHTARPLQGAQPGDMYTVLVAAQVADEPTLSTSATLMIHFLKAPSAPTPTLAPLAPVPTRHLCTPRQDHGVVVSGLREDPDLAGGHGPYSFALGPNPTVQRDWRLRALNGSHAYLTLGLHWVEPREHVVPVVVSHDAQMWQILVRVIVCRCNVEGQCMRKVGRMKGMPTKLSAVGILVGTLIAIGIFLILIFTHLTLARKKDLDQPADSVPLKAAV", "length": 753, "header": "tr|A0A5G2R114-1|A0A287AQ03_PIG Computationally mapped isoform of Cadherin-16 OS=Sus scrofa OX=9823 GN=CDH16 PE=1 SV=1 CANONICAL=A0A287AQ03-1" }, "locus": { "chromosome": "6", "start_pos": 27597848, "end_pos": 27589436, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071959.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071959.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070803.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070803.1" } ] } }, { "isoform_ac": "I3LSX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ03/entry#I3LSX8-1", "sequence": { "sequence": "MSNLGGWAGPGLLLWAQRCFPLLSKCGWPAYLLKCPPCPVLPGPAWPARPVERILSPGGWTKEARLGHQRAFPGAQPAELYVEVPENYGGNFPLYLTKLALPREEAGGQIVLSGNSGMAAAGPFAVDQESGFLMVTMALDREEQAEYQLQVTLETEDGRVLWGPQPVLVHVKDENDQVPHFSQAIYTAQLSRGTRPGTPFFFLEASDGDEPGTANSDLRFHILNQAPAQPSPDMFQLEPQLGALALSPKGSISLDQALEGPYQLLVQVKDMGDQVSGHQATATIDVSIVENTWVPLDPIHLAENCQVPYPHHIAQVHWSGGNVRYHLESQPPGPFEVDTEGKLYVTRELDREAQAEYLLQVWAQNTRGEDYADPLELHVVVIDENDNAPVCPPRGPPVNIPELSPPGTMVARLSVEDVDAPGSPNSHVVYRLLSPEPEEGAERSAFKLDSTSGSVTLGAAPLQAGQNILLQVLAIDLGGTEGGLSSTCEIAVTITDINDHAPEFTASQIAPISIPEDTEPGTLVTTLMATDADLEPTFRLMDFAIEEGNIEGTFGLDWEPDSGHVQLRLLKNLSYEAAPSHKLVVVVRSLAELVGPGPGPGATATVTVLVERVLPPLKLDQENYEVSVPVSAPAGSLLLTIQPAADPMSSPLRFSLVNDSEGWLDIKEASGEVHTARPLQGAQPGDMYTVLVAAQVADEPTLSTSATLMIHFLKAPSAPTPTLAPLAPVPTRHLCTPRQDHGVVVSGLREDPDLAGGHGPYSFALGPNPTVQRDWRLRALNGSHAYLTLGLHWVEPREHVVPVVVSHDAQMWQILVRVIVCRCNVEGQCMRKVGRMKGMPTKLSAVGILVGTLIAIGIFLILIFTHLTLARKKDLDQPADSVPLKAAV", "length": 888, "header": "tr|I3LSX8-1|A0A287AQ03_PIG Computationally mapped isoform of Cadherin-16 OS=Sus scrofa OX=9823 GN=CDH16 PE=1 SV=2 CANONICAL=A0A287AQ03-1" }, "locus": { "chromosome": "6", "start_pos": 27598987, "end_pos": 27589436, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027639.3", "url": "https://www.ensembl.org/id/ENSSSCT00000027639.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027221.2", "url": "https://www.ensembl.org/id/ENSSSCP00000027221.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 665, "start_aa": "Thr", "end_pos": 665, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr665", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDE3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDE3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623412", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623412", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3V7L4-1", "protein_name": "Cadherin-16", "gene_name": "Cdh16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MISAWLWLLCFSVIQTFTAEAQPTESLHTEVPENYGGNFPFYILKLPLPLGKDEGQIVLSGDSGTAAENTFAVDPDSGFLVATRALDREEKAEYQLQVTLESEDGQVLWGPQLVTVHVKDENDQVPQFSQAIYRAQLSQGTRPGVPFLFLEASDGDAPGTTNSDLRFHILSQFPVQPLPDMFQLDPQLGALALSPDGSTTLDHALEEHYQLLVQVKDMGDQPSGHQAMATLEISIVENSWTPLEPVHLAENLRVAYPHSIAQVHWGGGDVHYQLESQPPGPFEVDAEGRIHVTMELDREAQAEYQLQVRAQNSRGEDYAEPLELQVVVMDENDNAPVCSPHDPTISIPELSPPGTEVARLSAEDLDAPGSPNSHIVYQLLSPEPEQGAENKAFEIDSTSGSVTLGTAPLHAGQNILLQVLAVDLAGSEGGLSSTCEVAVMITDINNHAPEFINSQIGPISLPEDVKPGSLVATLMATDADLEPAFRLMDFAIEEGDPTGIFDLSRESDSNHVQLRLRKNLSYEEAPDHKVVVVVRNVEELVGPGPGPAATATVTILVERVIPPLKLDQESYETSIPVSTPAGSLLLTIQPSDPMNRTLRFSLVNDSEGWLCIKEVSGEVYTAQSLQGAQPGDTYTVLVEAQDTDEPEMSTSTTIVVHFLKASPVPALILASGPSRHLCTPRQDYGVVVNGVSEDPGLANRNGPYSFALGPNPTVQRDWRLQPLNDSHAYLTLALHWVEPGEYTVPVVVHHDAQMWQLQVQVIVCRCNVEGQCMRKVGRMKGMPTKLSAVGVLLGTLAAIGFILILVFTHLALARKDLDQPADSVPLKTAV", "length": 830 }, "evidence": [ { "id": "A0A287AQ03", "url": "https://omabrowser.org/oma/group/A0A287AQ03/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O75309-1", "protein_name": "Cadherin-16", "gene_name": "CDH16", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AHT4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AHT4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AHT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT4" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 200, "end_pos": 390, "start_aa": "Thr", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AHT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT4" }, { "id": "PS50212", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50212" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "N-terminal Ras-GEF", "eco_id": "ECO_0000259", "start_pos": 597, "end_pos": 741, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AHT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT4" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 443, "end_pos": 546, "start_aa": "Glu", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AHT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT4" }, { "id": "PS50009", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50009" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ras-GEF", "eco_id": "ECO_0000259", "start_pos": 780, "end_pos": 1019, "start_aa": "His", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1011, "end_pos": 1013 }, { "start_pos": 751, "end_pos": 753 }, { "start_pos": 830, "end_pos": 832 }, { "start_pos": 879, "end_pos": 881 }, { "start_pos": 957, "end_pos": 959 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AKJ3-1", "uniprot_ac": "A0A287AKJ3", "uniprot_id": "A0A287AKJ3_PIG", "mass": { "chemical_mass": 102802.0, "monoisotopic_mass": 102802.0 }, "refseq": {}, "gene_names": [ { "name": "LARP1", "type": "recommended", "evidence": [ { "id": "A0A287AKJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ] } ], "protein_names": [ { "name": "La ribonucleoprotein 1, translational regulator", "type": "synonym", "evidence": [ { "id": "A0A287AKJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LARP1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3", "locus": { "chromosome": "16", "start_pos": 68390880, "end_pos": 68484918, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017069", "url": "https://www.ensembl.org/id/ENSSSCG00000017069" } ] } } ], "crossref": [ { "id": "A0A287AKJ3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AKJ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017069", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017069", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08037", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08037", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525545", "url": "https://www.ncbi.nlm.nih.gov/gene/100525545", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006607", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006607", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006630", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006630", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045180", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045180", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525545", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525545", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NHKRHPA", "url": "https://omabrowser.org/oma/group/NHKRHPA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RQC5", "url": "https://www.orthodb.org/?gene=F1RQC5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22792", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22792", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22792:SF51", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22792:SF51", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05383", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05383", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIT4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQC5", "url": "https://www.uniprot.org/uniprotkb/F1RQC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQC5-1", "url": "https://www.uniprot.org/uniprotkb/F1RQC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKEQEKEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLVSRPARPPEPRHISANRAGEIKGSEPTTYVPVPVAPPTPAWQPETKSEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGSRTHFDYQFGYRKFDGAEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARLKKSEEPRFLHPTSLPQHLPSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEDSDYEIDDRDVNKILIVTQTPPYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWTEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNARTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTPAVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFEEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHKRHPVASGGGSGEGRKRCPSQSSSRPSTMVSQPPTPPTGQPTREDAKWTSQHSDTQTLGK", "length": 895, "header": "tr|A0A287AKJ3-1|A0A287AKJ3_PIG Isoform 1 of La ribonucleoprotein 1, translational regulator OS=Sus scrofa OX=9823 GN=LARP1 PE=1 SV=1 CANONICAL=A0A287AKJ3-1" }, "isoforms": [ { "isoform_ac": "A0A287AKJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3/entry#A0A287AKJ3-1", "sequence": { "sequence": "MKEQEKEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLVSRPARPPEPRHISANRAGEIKGSEPTTYVPVPVAPPTPAWQPETKSEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGSRTHFDYQFGYRKFDGAEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARLKKSEEPRFLHPTSLPQHLPSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEDSDYEIDDRDVNKILIVTQTPPYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWTEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNARTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTPAVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFEEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHKRHPVASGGGSGEGRKRCPSQSSSRPSTMVSQPPTPPTGQPTREDAKWTSQHSDTQTLGK", "length": 895, "header": "tr|A0A287AKJ3-1|A0A287AKJ3_PIG Isoform 1 of La ribonucleoprotein 1, translational regulator OS=Sus scrofa OX=9823 GN=LARP1 PE=1 SV=1 CANONICAL=A0A287AKJ3-1" }, "locus": { "chromosome": "16", "start_pos": 68414259, "end_pos": 68394357, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043906.1", "url": "https://www.ensembl.org/id/ENSSSCT00000043906.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044410.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044410.1" } ] } }, { "isoform_ac": "A0A5G2QIT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3/entry#A0A5G2QIT4-1", "sequence": { "sequence": "MKEQEKEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLVSRPARPPEPRHISANRAGEIKGSEPTTYVPVPVAPPTPAWQPETKSEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGSRTHFDYQFGYRKFDGAEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARLKKSEEPRFLHPTSLPQHLPSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEDSDYEIDDRDVNKILIVTQTPPYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWTEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNARTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTPAVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFEEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPTSTGPLTIWGLPSPCSLPAVPTTPFCHPLGEGNQRI", "length": 844, "header": "tr|A0A5G2QIT4-1|A0A287AKJ3_PIG Computationally mapped isoform of La ribonucleoprotein 1, translational regulator OS=Sus scrofa OX=9823 GN=LARP1 PE=1 SV=1 CANONICAL=A0A287AKJ3-1" }, "locus": { "chromosome": "16", "start_pos": 68414259, "end_pos": 68393747, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067840.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067840.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064711.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064711.1" } ] } }, { "isoform_ac": "F1RQC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3/entry#F1RQC5-1", "sequence": { "sequence": "MATQVEPLLPGGTPLLQAEEHGGLVRKKPPPPPPEGKGEPGANDVGGGEPDGGARRPRPPYAKPHKEGTGQLERESPRPPQPPGAEGLAVSDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLATVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQPHKSQPARKLPPKKDMKEQEKEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLVSRPARPPEPRHISANRAGEIKGSEPTTYVPVPVAPPTPAWQPETKSEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGSRTHFDYQFGYRKFDGAEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARLKKSEEPRFLHPTSLPQHLPSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEDSDYEIDDRDVNKILIVTQTPPYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWTEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNARTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTPAVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFEEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHKRHPVASGGGSGEGRKRCPSQSSSRPSTMVSQPPTPPTGQPTREDAKWTSQHSDTQTLGK", "length": 1101, "header": "tr|F1RQC5-1|A0A287AKJ3_PIG Computationally mapped isoform of La ribonucleoprotein 1, translational regulator OS=Sus scrofa OX=9823 GN=LARP1 PE=1 SV=3 CANONICAL=A0A287AKJ3-1" }, "locus": { "chromosome": "16", "start_pos": 68451221, "end_pos": 68394357, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018585.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018585.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018085.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018085.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 100, "start_aa": "Thr", "end_pos": 100, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr100", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 325, "start_aa": "Thr", "end_pos": 325, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr325", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 655, "start_aa": "Thr", "end_pos": 655, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr655", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 870, "start_aa": "Thr", "end_pos": 870, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr870", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIT4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525545", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525545", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GJC3-1", "protein_name": "La ribonucleoprotein 1, translational regulator", "gene_name": "Larp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAGRRGLGGTFRPARARPPPRRPRPSRAASRGARPPAARRGSRGLARLSAPLPPGPSAPLQPPEPPRAGGGGTQAADRGPPGRLGAPELSARRAAQRPPVRAAPGPRGPGPGAPPAASSGARGAPGPSAQMATQVEPLLPAGAALLQADEHGLARKKPAPDTQAESGPGDGGGEPDGGVRRPRPACARPGRDGTERESPRPPAAAEAPAGSDGEDGGRRDFVEAPPPKVNPWTKHAPPPPSAVNGQPPPEPSAPAKVVRAAAPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPARKLPPKKDMKEQEKGDGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPQEPRHTPAIRGEIKGSEPATYMPVSVAPPTPAWQPETKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKFDGTEGSRTPKYMNNITYYFDNVSSTEIYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEMVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSESWIEVKKRPRPSPARPKKSEEPRFSHPTALPQQIPSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEDSDYEIDDRDVNKILIVTQTPPYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWTEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGPPRYQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNARTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTPAVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHKRHPVVAGGSGEGRKRCPSQSSSRPATGISQPPTTPTGQATREDAKWTSQHTDTLTLGK", "length": 1204 }, "evidence": [ { "id": "A0A287AKJ3", "url": "https://omabrowser.org/oma/group/A0A287AKJ3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0Z015-1", "protein_name": "La ribonucleoprotein 1, translational regulator", "gene_name": "LARP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MATQVEALLPGAPLLPAEERALVLKPPQDGGREKGEPPMGPDGGPAAPRPPSAKQQKEESNNQEKESLLRAGGEAEEGGEAGGGAGRREFIEAPPPKVNPWTKNAAALAVNGQSPPDIFPADGQSENTTPAKVVRAANPRQRKGSKVGDFGDATNWPTPGEIAHKSVQQPHKAPSLRKLPIKKDMKEQEKGDGSDGKESLKTKSDESGEEKNGDDDNQKSAQKKKGNKHKWVPLQIDMKSEVPRDKTASRNNRQNEQHRHLPNNRGELKGWHPDNKHERPWLDHDETSSVKSEGGAVRGAFRGRGRGRGRGRGRGRGGHFDYQYGYRKFEGSDGSRTQKYASNITYYFDNISSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDSDGFLPITLIASFHRVQALTTDISLIIKALKDSKVVEIVDQKIRRKEQPEKWALPGPPMADYTQTDFSQFINCPEFVPRQSFQKETESAPGSPRPTSPVPTKTEEVSNLKTMPKGLSTSLPDLDSETWIEVKKRPRPSPARPKKPEESKTPQQQKQKDQDEPEELDFLFDEEMEQMDGRKNTFTDWSDEDSDYEIDDRDVNKILIVTQTPPYLRRHPGGDRTGNHTSRAKMSSELAKVINDGLYYYEQDLWTEQFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGVPEPSTIARSLPTTVPESPNYRNARTPRTPRTPQLKDPTQTPRFYPVVKEGRTIDAKTPRKRKTRHSSNPPMECHVGWVMDSREHRPRTASISSSPSEGTPAVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLAVEDGKEGYRYGLECLFRYYSYGLEKKFRPDIFKDFQEETIKDYEAGQLYGLEKFWAFLKYSKAKNLDINSKLQEYLSKFKRLEDFRVDPPMGEEGGHKRYPTTSGGDGRKRYPSQSSSKTVSQCPSSQAHASPSQPAQEDAKNLSQQVPAVESQTVGK", "length": 1049 }, "evidence": [ { "id": "A0A287AKJ3", "url": "https://omabrowser.org/oma/group/A0A287AKJ3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6PKG0-1", "protein_name": "La-related protein 1", "gene_name": "LARP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATQVEPLLPGGATLLQAEEHGGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPLPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQLPSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNTRTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTPTVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTPPTGQPVREDAKWTSQHSNTQTLGK", "length": 1096 }, "evidence": [ { "id": "A0A287AKJ3", "url": "https://omabrowser.org/oma/group/A0A287AKJ3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6ZQ58-1", "protein_name": "La-related protein 1", "gene_name": "Larp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATQVEPLLPAGAPLLQAEEHGLARKKPAPDAQAESGPGDGGGEPDGGVRRPRPACARPGRDGAERESPRPPAAAEAPAGSDGEDGGRRDFVEAPPPKVNPWTKHAPPPAAVNGQPPPEPSAPAKVVRAAAPKPRKGSKVGDFGDAVNWPTPGEIAHKSVQPQSHKPQPARKLPPKKDMKEQEKGDGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGSKHKWVPLQIDMKPEVPREKLASRPTRPQEPRHTPAVRGEMKGSEPATYMPVSVAPPTPAWQPETKVEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKFDGTEGPRTHKYMNNITYYFDNVSSNEIYSMDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEMVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSESWIEVKKRPRPSPARPKKPEEPRFSHPTALPQQLPSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSEEDSDYEIDDRDVNKILIVTQTPPYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWTEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNARTPRTPRTPQLKDSSQTPRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTPAVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHKRHPVVAGGSGEGRKRCPSQSSSRPATGISQPPTTPTGQATREDAKWTSQHSDTLTLRK", "length": 1072 }, "evidence": [ { "id": "A0A287AKJ3", "url": "https://omabrowser.org/oma/group/A0A287AKJ3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 11, "go_terms": [ { "name": "mRNA stabilization", "id": "GO:0048255", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048255", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "cellular response to rapamycin", "id": "GO:0072752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072752", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "cell population proliferation", "id": "GO:0008283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008283", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "translational initiation", "id": "GO:0006413", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006413", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "positive regulation of macroautophagy", "id": "GO:0016239", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016239", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "negative regulation of translational initiation", "id": "GO:0045947", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045947", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "response to amino acid starvation", "id": "GO:1990928", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990928", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "positive regulation of translation", "id": "GO:0045727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045727", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "TORC1 signaling", "id": "GO:0038202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038202", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "positive regulation of viral genome replication", "id": "GO:0045070", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045070", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "positive regulation of translational initiation", "id": "GO:0045948", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045948", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "RNA cap binding", "id": "GO:0000339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000339", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "ribosomal small subunit binding", "id": "GO:0043024", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043024", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "eukaryotic initiation factor 4E binding", "id": "GO:0008190", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008190", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "translation activator activity", "id": "GO:0008494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008494", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "RNA 7-methylguanosine cap binding", "id": "GO:0000340", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000340", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "mRNA 5'-UTR binding", "id": "GO:0048027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048027", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" }, { "name": "TORC1 complex", "id": "GO:0031931", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031931", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 179, "end_pos": 181, "annotation": "n_glycosylation_sequon" }, { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 463, "end_pos": 465, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AKJ3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 895, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AKJ3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AKJ3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AKJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKJ3" }, { "id": "PS50961", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50961" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HTH La-type RNA-binding", "eco_id": "ECO_0000259", "start_pos": 194, "end_pos": 284, "start_aa": "Ser", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 100, 325, 655, 870 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 179, "end_pos": 181 }, { "start_pos": 186, "end_pos": 188 }, { "start_pos": 463, "end_pos": 465 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { 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}, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": 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"snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ANV7-1", "uniprot_ac": "A0A287ANV7", "uniprot_id": "A0A287ANV7_PIG", "mass": { "chemical_mass": 71286.0, "monoisotopic_mass": 71286.0 }, "refseq": {}, "gene_names": [ { "name": "LCP1", "type": "recommended", "evidence": [ { "id": "A0A287ANV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ] } ], "protein_names": [ { "name": "Lymphocyte cytosolic protein 1", "type": "synonym", "evidence": [ { "id": "A0A287ANV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LCP1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7", "locus": { "chromosome": "11", "start_pos": 21223550, "end_pos": 21126539, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009412", "url": "https://www.ensembl.org/id/ENSSSCG00000009412" } ] } } ], "crossref": [ { "id": "A0A287ANV7", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ANV7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009412", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009412", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21292", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21292", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21327", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21327", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21333", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21333", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039959", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039959", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WQLMRKN", "url": "https://omabrowser.org/oma/group/WQLMRKN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR19961", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19961", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19961:SF35", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19961:SF35", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK02", "url": "https://www.uniprot.org/uniprotkb/F1RK02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK02-1", "url": "https://www.uniprot.org/uniprotkb/F1RK02-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARGSVSDEEMMELREAFAKVDTDGNGYISCNELNDLFKAACLPLPGYRVREITENLMATGDLDRDGRISFDEFIKVFHGLKSTEVAKTFRKAINKKEGICAIGGTSEQSSVGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMDPNTNDLFSAVGDGIVLCKMINLSVPDTIDERTINKKKLTPFTIQENLNLALNSASAIGCHVVNIGAEDLKEGKPYLVLGLLWQVIKIGLFADIELSRNEALAALLREGESLEDLMKLSPEELLLRWANYHLENAGCNKINNFSSDIKLTDFYSNIKDSKAYYHLLEQVAPKGDEEGIPAVVIDMSGLREKDDIQRAECMLQQAERLGCRQFVTATDVVRGNPKLNLAFIANLFNRYPALHKPENQDIDWGALEGETREERTFRNWMNSLGVNPRVNHLYSDLSDALVIFQLYEKIKVPVDWNRVNKPPYPKLGGNMKKLENCNYAVELGKNQAKFSLVGIGGQDLNEGNRTLTLALVWQLMRRYTLNILEEIGGGQKVNDDIIVNWVNETLKEAGKSTSISSFKDPKISTSLPVLDLIDAIQPGSINYDLLKTENLNDEEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGRGMKRV", "length": 636, "header": "tr|A0A287ANV7-1|A0A287ANV7_PIG Isoform 1 of Lymphocyte cytosolic protein 1 OS=Sus scrofa OX=9823 GN=LCP1 PE=1 SV=1 CANONICAL=A0A287ANV7-1" }, "isoforms": [ { "isoform_ac": "A0A287ANV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7/entry#A0A287ANV7-1", "sequence": { "sequence": "MARGSVSDEEMMELREAFAKVDTDGNGYISCNELNDLFKAACLPLPGYRVREITENLMATGDLDRDGRISFDEFIKVFHGLKSTEVAKTFRKAINKKEGICAIGGTSEQSSVGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMDPNTNDLFSAVGDGIVLCKMINLSVPDTIDERTINKKKLTPFTIQENLNLALNSASAIGCHVVNIGAEDLKEGKPYLVLGLLWQVIKIGLFADIELSRNEALAALLREGESLEDLMKLSPEELLLRWANYHLENAGCNKINNFSSDIKLTDFYSNIKDSKAYYHLLEQVAPKGDEEGIPAVVIDMSGLREKDDIQRAECMLQQAERLGCRQFVTATDVVRGNPKLNLAFIANLFNRYPALHKPENQDIDWGALEGETREERTFRNWMNSLGVNPRVNHLYSDLSDALVIFQLYEKIKVPVDWNRVNKPPYPKLGGNMKKLENCNYAVELGKNQAKFSLVGIGGQDLNEGNRTLTLALVWQLMRRYTLNILEEIGGGQKVNDDIIVNWVNETLKEAGKSTSISSFKDPKISTSLPVLDLIDAIQPGSINYDLLKTENLNDEEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGRGMKRV", "length": 636, "header": "tr|A0A287ANV7-1|A0A287ANV7_PIG Isoform 1 of Lymphocyte cytosolic protein 1 OS=Sus scrofa OX=9823 GN=LCP1 PE=1 SV=1 CANONICAL=A0A287ANV7-1" }, "locus": { "chromosome": "11", "start_pos": 21221798, "end_pos": 21185769, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058248.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058248.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045582.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045582.1" } ] } }, { "isoform_ac": "F1RK02-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7/entry#F1RK02-1", "sequence": { "sequence": "MARGSVSDEEMMELREAFAKVDTDGNGYISCNELNDLFKAACLPLPGYRVREITENLMATGDLDRDGRISFDEFIKVFHGLKSTEVAKTFRKAINKKEGICAIGGTSEQSSVGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMDPNTNDLFSAVGDGIVLCKMINLSVPDTIDERTINKKKLTPFTIQENLNLALNSASAIGCHVVNIGAEDLKEGKPYLVLGLLWQVIKIGLFADIELSRNEALAALLREGESLEDLMKLSPEELLLRWANYHLENAGCNKINNFSSDIKDSKAYYHLLEQVAPKGDEEGIPAVVIDMSGLREKDDIQRAECMLQQAERLGCRQFVTATDVVRGNPKLNLAFIANLFNRYPALHKPENQDIDWGALEGETREERTFRNWMNSLGVNPRVNHLYSDLSDALVIFQLYEKIKVPVDWNRVNKPPYPKLGGNMKKLENCNYAVELGKNQAKFSLVGIGGQDLNEGNRTLTLALVWQLMRRYTLNILEEIGGGQKVNDDIIVNWVNETLKEAGKSTSISSFKKILWRQKLVMEIRLQDPKISTSLPVLDLIDAIQPGSINYDLLKTENLNDEEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGRGMKRV", "length": 642, "header": "tr|F1RK02-1|A0A287ANV7_PIG Computationally mapped isoform of Lymphocyte cytosolic protein 1 OS=Sus scrofa OX=9823 GN=LCP1 PE=1 SV=4 CANONICAL=A0A287ANV7-1" }, "locus": { "chromosome": "11", "start_pos": 21221798, "end_pos": 21185769, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010313.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010313.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010045.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010045.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RK02", "url": "https://www.uniprot.org/uniprotkb/F1RK02" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MV10-1", "protein_name": "Plastin-2", "gene_name": "Lcp1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARGSVSDEEMMELREAFAKVDTDGNGYISCNELNDLFKAACLPLPGYRVREITENLMATGDLDKDGKISFDEFIKVFHGLKSTEVAKTFRKAINKKEGICAIGGTSEQSSVGTQHSYSEEEKYAFVNWINKALESDPDCRHVIPMNPNTDDLFNAVGDGIVLCKMVNLSVPDTIDERTINKKKLTPFTIQENLNLALNSASAIGCHVVNIGAEDLKEGKPYLVLGLLWQVIKIGLFADIELSRNEALIALLREGESLEDLMKLSPEELLLRWANYHLENAGCNKITNFSTDIKDSKAYYHLLEQVAPKGDEEGIPAVVIDMSGLREKDDIQRAECMLQQAERLGCRQFVTATDVVRGNPKLNLAFIANLFNKYPALHKPENQDIDWGALEGETREERTFRNWMNSLGVNPRVNHLYSDLADALIIFQLYEKIKVPVDWNRVNKPPYPKLGGNMKKLENCNYAVDLGKNQAKFSLVGIAGQDLNEGNRTLTLALLWQLMRRYTLIMMEDIGDGQKVNDDIIVNWVNETLKDAQKSSSISSFKDPKISTSLPVLDLIDAIQPGSINYDLIKTENLDEEEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGRGMKRV", "length": 627 }, "evidence": [ { "id": "A0A287ANV7", "url": "https://omabrowser.org/oma/group/A0A287ANV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P13796-1", "protein_name": "Plastin-2", "gene_name": "LCP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARGSVSDEEMMELREAFAKVDTDGNGYISFNELNDLFKAACLPLPGYRVREITENLMATGDLDQDGRISFDEFIKIFHGLKSTDVAKTFRKAINKKEGICAIGGTSEQSSVGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTNDLFNAVGDGIVLCKMINLSVPDTIDERTINKKKLTPFTIQENLNLALNSASAIGCHVVNIGAEDLKEGKPYLVLGLLWQVIKIGLFADIELSRNEALIALLREGESLEDLMKLSPEELLLRWANYHLENAGCNKIGNFSTDIKDSKAYYHLLEQVAPKGDEEGVPAVVIDMSGLREKDDIQRAECMLQQAERLGCRQFVTATDVVRGNPKLNLAFIANLFNRYPALHKPENQDIDWGALEGETREERTFRNWMNSLGVNPRVNHLYSDLSDALVIFQLYEKIKVPVDWNRVNKPPYPKLGGNMKKLENCNYAVELGKNQAKFSLVGIGGQDLNEGNRTLTLALIWQLMRRYTLNILEEIGGGQKVNDDIIVNWVNETLREAKKSSSISSFKDPKISTSLPVLDLIDAIQPGSINYDLLKTENLNDDEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKRV", "length": 627 }, "evidence": [ { "id": "A0A287ANV7", "url": "https://omabrowser.org/oma/group/A0A287ANV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P32599-1", "protein_name": "Fimbrin", "gene_name": "SAC6", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MNIVKLQRKFPILTQEDLFSTIEKFRAIDLDDKGWVEKQQALEAVSKDGDATYDEARETLKHVGVDASGRVELDDYVGLVAKLRESKTGAAPQTTFNVAPNSTPIVSTAATGLQHKGKGTQAKIIVAGSQTGTTHTINEEERREFTKHINSVLAGDQDIGDLLPFPTDTFQLFDECRDGLVLSKLINDSVPDTIDTRVLNWPKKGKELNNFQASENANIVINSAKAIGCVVVNVHSEDIIEGREHLILGLIWQIIRRGLLSKIDIKLHPELYRLLEDDETLEQFLRLPPEQILLRWFNYHLKQANWNRRVTNFSKDVSDGENYTILLNQLDPALCSKAPLQTTDLMERAEQVLQNAEKLDCRKYLTPSSLVAGNPKLNLAFVAHLFNTHPGLEPIQEEEKPEIEEFDAEGEREARVFTLWLNSLDVDPPVISLFDDLKDGLILLQAYEKVMPGAVDFKHVNKRPASGAEISRFKALENTNYAVDLGRAKGFSLVGIEGSDIVDGNKLLTLGLVWQLMRRNISITMKTLSSSGRDMSDSQILKWAQDQVTKGGKNSTIRSFKDQALSNAHFLLDVLNGIAPGYVDYDLVTPGNTEEERYANARLAISIARKLGALIWLVPEDINEVRARLIITFIASLMTLNK", "length": 642 }, "evidence": [ { "id": "A0A287ANV7", "url": "https://omabrowser.org/oma/group/A0A287ANV7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P54680-1", "protein_name": "Fimbrin", "gene_name": "fimA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTNFSESEISEFKASFNQFDENGDGQISALELQKILTKCGEKVTGVEVRDMIKEVDTDGNGSIDFKEFLQVMQKARQHSANASPAFASAVKKVGAVNTIGGYSGSTASGVQHSYSDEEKVAYIDWINNCLAKDVDLKSRLPIPEDGDKFFAACNDGLLLCKLINDAVPDTIDERVLNKKNLNAFRINENQVLCINSAKAIGCNVVNIGAGDLVEGRAHLIMGLTWQIIKIGLFARINLTNHPELYRLLHDGETIEDLLKLPVEEILLRWFNYHLAAAGSQRRVKNFSGDIKDSECYTILLKQIAPKDAGVETSALNISNLDQRAVKVLENADKLGCKKFLKPKDIVTGFQKLNLAFVANLFNTHPALEPVEDVVIIEETREEKTFRNWMNSLGVDPFVNNLYEGTYDGLILIQLFDKIYPGLVDHKKVNYPPYKAMGAEMKKIENCNYAIQLGKDCKYSLVGIDGKNVYDKNKTLTLSILWQLMRGHVISILTALSGSGKPIADADIVNWTNSKLSAAGKKQISGFKDSTISTGIPILDVIEAVRPGSVDPALVATSGSAEDNLLNAKLAVSTARKVGAVVFALPEDIVEVKPKMVLTLFASLWQVEMTK", "length": 610 }, "evidence": [ { "id": "A0A287ANV7", "url": "https://omabrowser.org/oma/group/A0A287ANV7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q61233-1", "protein_name": "Plastin-2", "gene_name": "Lcp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARGSVSDEEMMELREAFAKVDTDGNGYISCNELNDLFKAACLPLPGYRVREITENLMATGDLDQDGKISFDEFIKVFHGLKSTEVAKTFRKAINKKEGICAIGGTSEQSSVGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFNAVGDGIVLCKMINLSVPDTIDERTINKKKLTPFTIQENLNLALNSASAIGCHVVNIGAEDLKEGKPYLVLGLLWQVIKIGLFADIELSRNEALIALLREGESLEDLMKLSPEELLLRWANYHLENAGCTKITNFSTDIKDSKAYYHLLEQVAPKGDEEGIPAVVIDMSGLREKDDIQRAECMLQQAERLGCRQFVTATDVVRGNPKLNLAFIANLFNKYPALHKPENQDIDWGALEGETREERTFRNWMNSLGVNPRVNHLYSDLSDALVIFQLYEKIKVPVDWNRVNKPPYPKLGGNMKKLENCNYAVDLGKNQAKFSLVGIAGQDLNEGNRTLTLALVWQLMRRYTLNILEDIGGGQKVNDDIIVNWVNTTLKEAQKSSSIASFKDPKISTSLPVLDLIDAIQPGSINYDLLKTENLDDEEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKRV", "length": 627 }, "evidence": [ { "id": 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"https://omabrowser.org/oma/group/A0A287ANV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8IQZ7-1", "protein_name": "Fimbrin, isoform D", "gene_name": "Fim", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MADILNVEQHQTVQEFKQNLEELIPNLDANKDGFIDLHELKDALNQVGFKLAGYQVREMIDEYKGKQLTAFQGKLNLEEFEALCLDLKSKDVASTFKTVVSKKENLETLGGMSSISSEGTTHSVRLEEQLAFSDWINSNLGHDKDLQHLLPIDSEGKRLYLSIKDGILLCKIINHSCPDTIDERAINKKNLTVYREFENLTLALVSSQAIGCNIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFSHITLDSCPGLAGLLFDNERLEDLMKMSPEAILLRWVNHHLERAGISRRCTNFQSDIVDSEIYSHLLKQIAGNDADVNLDALRESDLQSRAEIMLQQAAKLNCRSFLTPQDVVNGVYKLNLAFVANLFNNHPGLDKPEQIEGLESIEETREEKTYRNWMNSMGVAPHVNWLYSDLADGLVIFQLFDVIKPGIVNWSRVHKRFSPLRKFMEKLENCNYAVDLGKQLKFSLVGIAGQDLNDGNATLTLALIWQLMRAYTLSILSRLANTGNPIIEKEIVQWVNNRLSEAGKQSQLRNFNDPAIADGKIVIDLIDAIKEGSINYELVRTSGTQEDNLANAKYAISMARKIGARVYALPEDITEVKPKMVMTVFACMMALDYVPNMDSVDQNNHNSSANNSN", "length": 641 }, "evidence": [ { "id": "A0A287ANV7", "url": "https://omabrowser.org/oma/group/A0A287ANV7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 10, "go_terms": [ { "name": "phagocytic cup", "id": "GO:0001891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001891", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "actin filament", "id": "GO:0005884", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005884", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "stress fiber", "id": "GO:0001725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001725", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "filopodium", "id": "GO:0030175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030175", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "ruffle", "id": "GO:0001726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001726", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "actin filament bundle", "id": "GO:0032432", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032432", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "integrin binding", "id": "GO:0005178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005178", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "GTPase binding", "id": "GO:0051020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051020", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "actin filament bundle assembly", "id": "GO:0051017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051017", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "regulation of intracellular protein transport", "id": "GO:0033157", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033157", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "T cell activation involved in immune response", "id": "GO:0002286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002286", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" }, { "name": "actin filament network formation", "id": "GO:0051639", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051639", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" }, { "start_pos": 496, "end_pos": 498, "annotation": "n_glycosylation_sequon" }, { "start_pos": 535, "end_pos": 537, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ANV7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 636, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ANV7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ANV7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ANV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 120, "end_pos": 236, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287ANV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV7" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 44, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 168, "end_pos": 170 }, { "start_pos": 288, "end_pos": 290 }, { "start_pos": 496, "end_pos": 498 }, { "start_pos": 535, "end_pos": 537 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { 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"https://www.uniprot.org/uniprotkb/A0A287AQ39" } ] } ], "protein_names": [ { "name": "RAB11-binding protein RELCH", "type": "recommended", "evidence": [ { "id": "A0A287AQ39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ39/entry#names_and_taxonomy" } ] }, { "name": "LisH domain and HEAT repeat-containing protein KIAA1468", "type": "synonym", "evidence": [ { "id": "A0A287AQ39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ39/entry#names_and_taxonomy" } ] }, { "name": "RAB11-binding protein containing LisH, coiled-coil, and HEAT repeats", "type": "synonym", "evidence": [ { "id": "A0A287AQ39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ39/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Regulates intracellular cholesterol distribution from recycling endosomes to the trans-Golgi network through interactions with RAB11 and OSBP. Functions in membrane tethering and promotes OSBP-mediated cholesterol transfer between RAB11-bound recycling endosomes and OSBP-bound Golgi-like membranes.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJI7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI7#function" }, { "database": "UniProtKB", "id": "ARBA00058592", "url": "https://www.uniprot.org/uniprotkb/ARBA00058592#function" }, { "database": "UniProtKB", "id": "A0A286ZLE0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLE0#function" }, { "database": "UniProtKB", "id": "A0A287AQ39", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ39#function" }, { "database": "UniProtKB", "id": "A0A287BQJ1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQJ1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AQ39", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ39" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RELCH", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ39", "locus": { "chromosome": "1", "start_pos": 159207616, "end_pos": 159317675, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004899", "url": "https://www.ensembl.org/id/ENSSSCG00000004899" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004899", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004899", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521354", "url": "https://www.ncbi.nlm.nih.gov/gene/100521354", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021133", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021133", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521354", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521354", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZLE0", "url": "https://www.orthodb.org/?gene=A0A286ZLE0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A287AQ39", "url": "https://www.orthodb.org/?gene=A0A287AQ39", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A287BQJ1", "url": "https://www.orthodb.org/?gene=A0A287BQJ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32059", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32059", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32059:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32059:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZLE0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLE0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJI7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQ39", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQ39-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQJ1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9K0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9K0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9K0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAMAPGGGGGGVNPFLSDSDEDDDEVSATDERRAGLRLSSGSGLDPGSADSLSPQDPVALGSSARPGLPGEGSATAVTLGSTGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGIPGAAGIGGAGGREPSTTSGGGQLNRAGSISTLDSLDFARYSDDGNRETDERVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKNYKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPKPPDLLQLYRDFGNHQVTGKDLVDVASGVEEDELEALTPILSNLPPTLEAPQTVENSLLVQKLEDKISLLNSEKWSLMEQIRRLESEMDFLKNEHFANPVVCDSVQPSLEQSPHKDSEDSGQNSVLNSSDKGENKDIHLSKSDEVDSTIPKENVPNSFPRREREGMPSSSPSNKSTVHFDKPNRKLSPAFHQALLSFCRMSADSRLGSEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKREELIPLILCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAVIKSLGIIMGYIDDPDKYQQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSHLIPTLLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFSSRAKLHGEVPQIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEHEGTTGWESLLWVVNQLLPQLIEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNGVLTKATVPIYATGVLTCYIQEEDRKLLIGFLEDVMTLLSLSHAPLDSLKASFVELGANPAYHELLLTVLWYGVVHTSALVRCTAARMFELTLRGMSEALVDKRVAPALVTLSSDPEFSVRIATIPAFGTIMETVIQRELLERVKMQLASFLEDPQYQDQYSLHTEIIKTFGRVGPNAEPRFRDEFVIPHLHKLALVNNLQIVDSKRLDIATHLFEAYSALSCCFISEDLMVNHFLPGLRCLRIDMEHLSPEHEVILSSMIKECEQKVENKTVQEPQGSMSIAASLVSEDTKTKFLNKMGQLTTSGAMLANVFQRKK", "length": 1214, "header": "tr|A0A287AQ39-1|A0A287AQ39_PIG Isoform 1 of RAB11-binding protein RELCH OS=Sus scrofa OX=9823 GN=RELCH PE=1 SV=1 CANONICAL=A0A287AQ39-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ39/entry#A0A286ZLE0-1", "sequence": { "sequence": "MAAMAPGGGGGGVNPFLSDSDEDDDEVSATDERRAGLRLSSGSGLDPGSADSLSPQDPVALGSSARPGLPGEGSATAVTLGSTGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGIPGAAGIGGAGGREPSTTSGGGQLNRAGSISTLDSLDFARYSDDGNRETDERVAEHEVPLQERKNYKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPKPPDLLQLYRDFGNHQVTGKDLVDVASGVEEDELEALTPILSNLPPTLEAPQTVENSLLVQKLEDKISLLNSEKWSLMEQIRRLESEMDFLKNEHFANPVVCDSVQPSLEQSPHKDSEDSGQNSVLNSSDKGENKDIHLSKSDEVDSTIPKENVPNSFPRREREGMPSSSPSNKSTVHFDKPNRKLSPAFHQALLSFCRMSADSRLGSEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKREELIPLILCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAVIKSLGIIMGYIDDPDKYQQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSHLIPTLLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFSSRAKLHGEVPQIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEHEGTTGWESLLWVVNQLLPQLIEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNGVLTKATVPIYATGVLTCYIQEEDRKLLIGFLEDVMTLLSLSHAPLDSLKASFVELGANPAYHELLLTVLWYGVVHTSALVRCTAARMFELLVKGVNETLVAQRVVPALITLSSDPEISVRIATIPAFGTIMETVIQRELLERVKMQLASFLEDPQYQDQYSLHTEIIKTFGRVGPNAEPRFRDEFVIPHLHKLALVNNLQIVDSKRLDIATHLFEAYSALSCCFISEDLMVNHFLPGLRCLRIDMEHLSPEHEVILSSMIKECEQKVENKTVQEPQGSMSIAASLVSEDTKTKFLNKMGQLTTSGAMLANVFQRKK", "length": 1190, "header": "tr|A0A286ZLE0-1|A0A287AQ39_PIG Computationally mapped isoform of RAB11-binding protein RELCH OS=Sus scrofa OX=9823 GN=RELCH PE=1 SV=3 CANONICAL=A0A287AQ39-1" }, "locus": { "chromosome": "1", "start_pos": 159317408, "end_pos": 159209539, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055331.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055331.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032385.3", "url": "https://www.ensembl.org/id/ENSSSCP00000032385.3" } ] } }, { "isoform_ac": "A0A287AJI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ39/entry#A0A287AJI7-1", "sequence": { "sequence": "MAAMAPGGGGGGVNPFLSDSDEDDDEVSATDERRAGLRLSSGSGLDPGSADSLSPQDPVALGSSARPGLPGEGSATAVTLGSTGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGIPGAAGIGGAGGREPSTTSGGGQLNRAGSISTLDSLDFARYSDDGNRETDERVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKNYKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPKPPDLLQLYRDFGNHQVTGKDLVDVASGVEEDELEALTPILSNLPPTLEAPQTVENSLLVQKLEDKISLLNSEKWSLMEQIRRLESEMDFLKNEHFANPVVCDSVQPSLEQSPHKDSEDSGQNSVLNSSDKGENKDIHLSKSDEVDSTIPKENVPNSFPRREREGMPSSSPSNKSTVHFDKPNRKLSPAFHQALLSFCRMSADSRLGSEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKRERMVLHLCQELIPLILCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAVIKSLGIIMGYIDDPDKYQQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSHLIPTLLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFSSRAKLHGEVPQIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEHEGTTGWESLLWVVNQLLPQLIEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNGVLTKATVPIYATGVLTCYIQEEDRKLLIGFLEDVMTLLSLSHAPLDSLKASFVELGANPAYHELLLTVLWYGVVHTSALVRCTAARMFELLVKGVNETLVAQRVVPALITLSSDPEISVRIATIPAFGTIMETVIQRELLERVKMQLASFLEDPQYQDQYSLHTEIIKTFGRVGPNAEPRFRDEFVIPHLHKLALVNNLQIVDSKRLDIATHLFEAYSALSCCFISEDLMVNHFLPGLRCLRIDMEHLSPEHEVILSSMIKECEQKVENKTVQEPQGSMSIAASLVSEDTKTKFLNKMGQLTTSGAMLANVFQRKK", "length": 1222, "header": "tr|A0A287AJI7-1|A0A287AQ39_PIG Computationally mapped isoform of RAB11-binding protein RELCH OS=Sus scrofa OX=9823 GN=RELCH PE=1 SV=1 CANONICAL=A0A287AQ39-1" }, "locus": { "chromosome": "1", "start_pos": 159317408, "end_pos": 159209539, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055242.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055242.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044051.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044051.1" } ] } }, { "isoform_ac": "A0A287AQ39-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ39/entry#A0A287AQ39-1", "sequence": { "sequence": "MAAMAPGGGGGGVNPFLSDSDEDDDEVSATDERRAGLRLSSGSGLDPGSADSLSPQDPVALGSSARPGLPGEGSATAVTLGSTGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGIPGAAGIGGAGGREPSTTSGGGQLNRAGSISTLDSLDFARYSDDGNRETDERVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKNYKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPKPPDLLQLYRDFGNHQVTGKDLVDVASGVEEDELEALTPILSNLPPTLEAPQTVENSLLVQKLEDKISLLNSEKWSLMEQIRRLESEMDFLKNEHFANPVVCDSVQPSLEQSPHKDSEDSGQNSVLNSSDKGENKDIHLSKSDEVDSTIPKENVPNSFPRREREGMPSSSPSNKSTVHFDKPNRKLSPAFHQALLSFCRMSADSRLGSEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKREELIPLILCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAVIKSLGIIMGYIDDPDKYQQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSHLIPTLLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFSSRAKLHGEVPQIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEHEGTTGWESLLWVVNQLLPQLIEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNGVLTKATVPIYATGVLTCYIQEEDRKLLIGFLEDVMTLLSLSHAPLDSLKASFVELGANPAYHELLLTVLWYGVVHTSALVRCTAARMFELTLRGMSEALVDKRVAPALVTLSSDPEFSVRIATIPAFGTIMETVIQRELLERVKMQLASFLEDPQYQDQYSLHTEIIKTFGRVGPNAEPRFRDEFVIPHLHKLALVNNLQIVDSKRLDIATHLFEAYSALSCCFISEDLMVNHFLPGLRCLRIDMEHLSPEHEVILSSMIKECEQKVENKTVQEPQGSMSIAASLVSEDTKTKFLNKMGQLTTSGAMLANVFQRKK", "length": 1214, "header": "tr|A0A287AQ39-1|A0A287AQ39_PIG Isoform 1 of RAB11-binding protein RELCH OS=Sus scrofa OX=9823 GN=RELCH PE=1 SV=1 CANONICAL=A0A287AQ39-1" }, "locus": { "chromosome": "1", "start_pos": 159317408, "end_pos": 159209539, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063628.2", "url": "https://www.ensembl.org/id/ENSSSCT00000063628.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046178.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046178.1" } ] } }, { "isoform_ac": "A0A287BQJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ39/entry#A0A287BQJ1-1", "sequence": { "sequence": "MAAMAPGGGGGGVNPFLSDSDEDDDEVSATDERRAGLRLSSGSGLDPGSADSLSPQDPVALGSSARPGLPGEGSATAVTLGSTGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGIPGAAGIGGAGGREPSTTSGGGQLNRAGSISTLDSLDFARYSDDGNRETDERVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKNYKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPKPPDLLQLYRDFGNHQVTGKDLVDVASGVEEDELEALTPILSNLPPTLEAPQTVENSLLVQKLEDKISLLNSEKWSLMEQIRRLESEMDFLKNEHFANPVVCDSVQPSLEQSPHKDSEDSGQNSVLNSSDKGENKDIHLSKSDEVDSTIPKENVPNSFPRREREGMPSSSPSNKSTVHFDKPNRKLSPAFHQALLSFCRMSADSRLGSEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKREELIPLILCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAVIKSLGIIMGYIDDPDKYQQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSHLIPTLLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFSSRAKLHGEVPQIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEHEGTTGWESLLWVVNQLLPQLIEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNGVLTKATVPIYATGVLTCYIQEEDRKLLIGFLEDVMTLLSLSHAPLDSLKASFVELGANPAYHELLLTVLWYGVVHTSALVRCTAARMFELLVKGVNETLVAQRVVPALITLSSDPEISVRIATIPAFGTIMETVIQRELLERVKMQLASFLEDPQYQDQYSLHTEIIKTFGRVGPNAEPRFRDEFVIPHLHKLALVNNLQIVDSKRLDIATHLFEAYSALSCCFISEDLMVNHFLPGLRCLRIDMEHLSPEHEVILSSMIKECEQKVENKTVQEPQGSMSIAASLVSEDTKTKFLNKMGQLTTSGAMLANVFQRKK", "length": 1214, "header": "tr|A0A287BQJ1-1|A0A287BQJ1_PIG Computationally mapped isoform of RAB11-binding protein RELCH OS=Sus scrofa OX=9823 GN=RELCH PE=1 SV=1 CANONICAL=A0A287AQ39-1" }, "locus": { "chromosome": "1", "start_pos": 159317408, "end_pos": 159209539, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104740.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104740.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074697.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074697.1" } ] } }, { "isoform_ac": "A0A8W4F9K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ39/entry#A0A8W4F9K0-1", "sequence": { "sequence": "MAAMAPGGGGGGVNPFLSDSDEDDDEVSATDERRAGLRLSSGSGLDPGSADSLSPQDPVALGSSARPGLPGEGSATAVTLGSTGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGIPGAAGIGGAGGREPSTTSGGGQLNRAGSISTLDSLDFARYSDDGNRETDERVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKNYKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPKPPDLLQLYRDFGNHQVTGKDLVDVASGVEEDELEALTPILSNLPPTLEAPQTVENSLLVQKLEDKISLLNSEKWSLMEQIRRLESEMDFLKNEHFANPVVCDSVQPSLEQSPHKDSEDSGQNSVLNSSDKGENKDIHLSKSDEVDSTIPKENVPNSFPRREREGMPSSSPSNKSTVHFDKPNRKLSPAFHQALLSFCRMSADSRLGSEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKREELIPLILCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAVIKSLGIIMGYIDDPDKYQQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSHLIPTLLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFSSRAKLHGEVPQIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEHEGTTGWESLLWVVNQLLPQLIEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNGVLTKATVPIYATGVLTCYIQEEDRKLLIGFLEDVMTLLSLSHAPLDSLKASFVELGANPAYHELLLTVLWYGVVHTSALVRCTAARMFELCQDCHNSSLWHYYGNSYSERVAGKSENAVGFFPGRSSISRPVFIAYRDHKNIR", "length": 1041, "header": "tr|A0A8W4F9K0-1|A0A287AQ39_PIG Computationally mapped isoform of RAB11-binding protein RELCH OS=Sus scrofa OX=9823 GN=RELCH PE=1 SV=1 CANONICAL=A0A287AQ39-1" }, "locus": { "chromosome": "1", "start_pos": 159317408, "end_pos": 159225794, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104593.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104593.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075506.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075506.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., 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] }, { "id": "ssc:100152303", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152303", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ICPSIAI", "url": "https://omabrowser.org/oma/group/ICPSIAI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AHQ0", "url": "https://www.orthodb.org/?gene=A0A287AHQ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18919", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18919", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18919:SF107", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18919:SF107", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00108", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00108", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02803", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02803", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9969896", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9969896", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001928380", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928380", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AHQ0", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AV07", "url": "https://www.uniprot.org/uniprotkb/A0A287AV07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AV07-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV07-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFE1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SB62", "url": "https://www.uniprot.org/uniprotkb/F1SB62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SB62-1", "url": "https://www.uniprot.org/uniprotkb/F1SB62-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVTLLHTMERKGCQRGVAALCIGGGMGIAMCVQRG", "length": 397, "header": "tr|A0A287AHQ0-1|A0A287AHQ0_PIG Isoform 1 of Acetyl-CoA acetyltransferase 2 OS=Sus scrofa OX=9823 GN=ACAT2 PE=1 SV=1 CANONICAL=A0A287AHQ0-1" }, "isoforms": [ { "isoform_ac": "A0A287AHQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ0/entry#A0A287AHQ0-1", "sequence": { "sequence": "MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVTLLHTMERKGCQRGVAALCIGGGMGIAMCVQRG", "length": 397, "header": "tr|A0A287AHQ0-1|A0A287AHQ0_PIG Isoform 1 of Acetyl-CoA acetyltransferase 2 OS=Sus scrofa OX=9823 GN=ACAT2 PE=1 SV=1 CANONICAL=A0A287AHQ0-1" }, "locus": { "chromosome": "1", "start_pos": 7612754, "end_pos": 7600956, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039899.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039899.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043380.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043380.1" } ] } }, { "isoform_ac": "A0A287AV07-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ0/entry#A0A287AV07-1", "sequence": { "sequence": "MGRFSAGPQPPGAPWGAPARGASAASHTRPSLCPDELRWAPVQGESAGPPAPAALGALPIALAFPSVLGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVTLLHTMERKGCQRGVAALCIGGGMGIAMCVQRG", "length": 447, "header": "tr|A0A287AV07-1|A0A287AHQ0_PIG Computationally mapped isoform of Acetyl-CoA acetyltransferase 2 OS=Sus scrofa OX=9823 GN=ACAT2 PE=1 SV=1 CANONICAL=A0A287AHQ0-1" }, "locus": { "chromosome": "1", "start_pos": 7612190, "end_pos": 7600956, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044125.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044125.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047700.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047700.1" } ] } }, { "isoform_ac": "A0A5G2QFE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ0/entry#A0A5G2QFE1-1", "sequence": { "sequence": "MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGAYINHNGFSIIVAIYKQEHYNSQKKNTEGCLHIGLGYDLHVAKQRHFQDPSESEVGRSRGATSASRRFWPQGVHTCCVATVGFMRAWPLPHGCSEAVAELLLLQADSQKLALFPVAPVCLFYFLGLDLWGHLAAFCCGMLQSTWESPYAAAGGALKRQKKKKST", "length": 376, "header": "tr|A0A5G2QFE1-1|A0A287AHQ0_PIG Computationally mapped isoform of Acetyl-CoA acetyltransferase 2 OS=Sus scrofa OX=9823 GN=ACAT2 PE=1 SV=2 CANONICAL=A0A287AHQ0-1" }, "locus": { "chromosome": "1", "start_pos": 7612754, "end_pos": 7603986, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079409.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079409.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063447.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063447.2" } ] } }, { "isoform_ac": "F1SB62-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ0/entry#F1SB62-1", "sequence": { "sequence": "MGRFSAGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAVAKAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVTLLHTMERKGCQRGVAALCIGGGMGIAMCVQRG", "length": 385, "header": "tr|F1SB62-1|A0A287AHQ0_PIG Computationally mapped isoform of Acetyl-CoA acetyltransferase 2 OS=Sus scrofa OX=9823 GN=ACAT2 PE=1 SV=2 CANONICAL=A0A287AHQ0-1" }, "locus": { "chromosome": "1", "start_pos": 7612190, "end_pos": 7600956, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004477.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004477.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004375.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004375.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 247, "start_aa": "Thr", "end_pos": 247, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr247", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFE1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152303", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152303", "resource": "KEGG Pathway" }, { "id": "R-SSC-9969896", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9969896", "resource": "Reactome", "description": "Lanosterol biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HGP4-1", "protein_name": "Acetyl-CoA acetyltransferase, cytosolic", "gene_name": "LOC100760000", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSAGSDPVVIVSAARTAIGSFNGALSTVPVHDLGTTVIKEVLQRAKVAPEEVSEVIFGHVLTAGCGQNPTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAIGDSSIVVAGGMENMSKAPHLAHLRAGVKMGEMPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDKVAVVSQNRAEHAQKAGHFDKEIVPVLVSSRKGPTEVKIDEFPRHGSNMEAVGKLKPYFLSDGTGTVTPANASGINDGAAAVVLMKKTEAESRMLKPLARIVSWSQAGVEPSIMGAGPIPAIKQAVAKAGWSLEDVDLFEINEAFAAVSAAIAKELGLNTEKVNIDGGAIALGHPLGASGCRILVTLLHSLERTGGTRGVAALCIGGGMGIAMCVQRG", "length": 397 }, "evidence": [ { "id": "A0A287AHQ0", "url": "https://omabrowser.org/oma/group/A0A287AHQ0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P41338-1", "protein_name": "Acetyl-CoA acetyltransferase", "gene_name": "ERG10", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSQNVYIVSTARTPIGSFQGSLSSKTAVELGAVALKGALAKVPELDASKDFDEIIFGNVLSANLGQAPARQVALAAGLSNHIVASTVNKVCASAMKAIILGAQSIKCGNADVVVAGGCESMTNAPYYMPAARAGAKFGQTVLVDGVERDGLNDAYDGLAMGVHAEKCARDWDITREQQDNFAIESYQKSQKSQKEGKFDNEIVPVTIKGFRGKPDTQVTKDEEPARLHVEKLRSARTVFQKENGTVTAANASPINDGAAAVILVSEKVLKEKNLKPLAIIKGWGEAAHQPADFTWAPSLAVPKALKHAGIEDINSVDYFEFNEAFSVVGLVNTKILKLDPSKVNVYGGAVALGHPLGCSGARVVVTLLSILQQEGGKIGVAAICNGGGGASSIVIEKI", "length": 398 }, "evidence": [ { "id": "A0A287AHQ0", "url": "https://omabrowser.org/oma/group/A0A287AHQ0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q5XI22-1", "protein_name": "Acetyl-CoA acetyltransferase, cytosolic", "gene_name": "Acat2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNAGSDPVVIISAARTAIGSFNGALSTVPVHNLGTTVIKEVLQRAKVAPEEVSEVIFGHVLTAGCGQNPTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGMENMSKAPHLAHLRSGVKMGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDKVAVVSQNRAEHAQKAGHFDKEIVPVHVSSRKGLTEVKIDEFPRHGSNLEAMSKLKPYFLTDGTGTVTPANASGMNDGAAAVVLMKKTEAESRMLKPLAQVVSWSQAGVEPSVMGVGPIPAIKQAVAKAGWSLEDVDVFEINEAFAAVSAAIAKELGLSPEKVNIDGGAIALGHPLGASGCRILVTLLHTLERVGGTRGVAALCIGGGMGIAMCVQRG", "length": 397 }, "evidence": [ { "id": "A0A287AHQ0", "url": "https://omabrowser.org/oma/group/A0A287AHQ0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86AD9-1", "protein_name": "Probable acetyl-CoA acetyltransferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISNLSKVLNSNVKRMYTTAKNLESVVIVSAVRTPIGSIGGSLSTIPGTKLSSITIEEAVKRAGIKPSDVDEAIIGNVISANLGQAPARQCALGAGLEQKTITTTINKVCSSGMKAIVFGAQSIALGHSKTVVAGGFESMSQVPYYADKMRFGAKYGNQTFIDGLVRDGLADAYNGSAMGVCGDDCADKYKITREQQDKFAVDSYLRALEAQKNGFFNDEIVQVPIVGRGGKVTYVVEDEEPKKVLFDKIPNLKPAFTPNGTVTPANASKLNDGASSVILMSESHAKELGLKPLARIIGYADAEQAPIEFPTAPALAIPKALKNAGINMSQVDLFEINEAFAVVGLANAKILDIDHNKLNVNGGAVALGHPIGSSGCRIVVTLTHLLQNKNLKYGVAAICNGGGGSTALVLEKL", "length": 414 }, "evidence": [ { "id": "A0A287AHQ0", "url": "https://omabrowser.org/oma/group/A0A287AHQ0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8CAY6-1", "protein_name": "Acetyl-CoA acetyltransferase, cytosolic", "gene_name": "Acat2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNAGSDPVVIVSAARTAIGSFNGALSTVPVHEMGTTVIKEVLQRAKVAPEEVSEVIFGHVLTAGCGQNPTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGMENMSKAPHLTHLRTGVRMGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDKVAVLSQNRAEHAQKAGHFDKEIVPVLVSSRKGLTEVKIDEFPRHGSNLEAMGKLKPYFLTDGTGTVTPANASGMNDGAAAVVLMKKTEAERRMLKPLARIVSWSQAGVEPSVMGVGPIPAIKQAVAKAGWSLEDVDLFEINEAFAAVSAAIAKELGLNPEKVNIDGGAIALGHPLGASGCRILVTLLHTLERVGGTRGVAALCIGGGMGVAMCVQRG", "length": 397 }, "evidence": [ { "id": "A0A287AHQ0", "url": "https://omabrowser.org/oma/group/A0A287AHQ0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8S4Y1-1", "protein_name": "Acetyl-CoA acetyltransferase 2", "gene_name": "ACCT2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAHTSESVNPRDVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEVVFGNVLSANLGQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQLGINDVVVAGGMESMSNTPKYLAEARKGSRFGHDSLVDGMLKDGLWDVYNDCGMGSCAELCAEKFQITREQQDDYAVQSFERGIAAQEAGAFTWEIVPVEVSGGRGRPSTIVDKDEGLGKFDAAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKALQLGLLVLAKIKGYGDAAQEPEFFTTAPALAIPKAIAHAGLESSQVDYYEINEAFAVVALANQKLLGIAPEKVNVNGGAVSLGHPLGCSGARILITLLGILKKRNGKYGVGGVCNGGGGASALVLELL", "length": 403 }, "evidence": [ { "id": "A0A287AHQ0", "url": "https://omabrowser.org/oma/group/A0A287AHQ0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9BWD1-1", "protein_name": "Acetyl-CoA acetyltransferase, cytosolic", "gene_name": "ACAT2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERMGRSRGVAALCIGGGMGIAMCVQRE", "length": 397 }, "evidence": [ { "id": "A0A287AHQ0", "url": "https://omabrowser.org/oma/group/A0A287AHQ0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W0H6-1", "protein_name": "2.3.1.9", "gene_name": "Acat2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDVFIVSAARTPIGSFNGTLSKLKASDLGSVVIQEVLRRANVEGQEVNEVILGQALSAGQGQNPARQASLKAGLPIQVPAYGINMLCGSGLKTVALGYQAIRSGDAQIVVAGGQESMSLAPHVMHLRQGVKMGPGTMVDSMIHDGLTDAMENIHMGITAENLADKYNISREAQDAYAVLSQNRAEEAQKKGYFDKEIVPVEIKDRKGTTTFSKDEYIKAGSTVEGIQKLRAAFKEGGSITAGNASGVNDSAAAVLLMSGEEVARKGLKPLARIVGWTQSGIEPKVMGLGPVTAVEALLQKINWKREEVDLYELNEAFAAQSLAVLQDLQLDAQKVNVNGGAIALGHPIGASGARVLVTLLYALERTGGRKGIASLCIGGGMGIALAVERLS", "length": 392 }, "evidence": [ { "id": "A0A287AHQ0", "url": "https://omabrowser.org/oma/group/A0A287AHQ0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHQ0", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "acetyl-CoA C-acetyltransferase activity", "id": "GO:0003985", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003985", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHQ0", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ0" } ], "pmid": "" }, { "name": "acyltransferase activity, transferring groups other than amino-acyl groups", "id": "GO:0016747", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016747", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHQ0", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "farnesyl diphosphate biosynthetic process, mevalonate pathway", "id": "GO:0010142", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010142", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHQ0", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AHQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ0" }, { "id": "PF02803", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02803" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thiolase C-terminal", "eco_id": "ECO_0000259", "start_pos": 274, "end_pos": 396, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AHQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ0" }, { "id": "PF00108", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thiolase N-terminal", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 267, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 247 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 }, { "start_pos": 250, "end_pos": 252 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AJW7-1", "uniprot_ac": "A0A287AJW7", "uniprot_id": "A0A287AJW7_PIG", "mass": { "chemical_mass": 39707.0, "monoisotopic_mass": 39707.0 }, "refseq": {}, "gene_names": [ { "name": "ENTR1", "type": "recommended", "evidence": [ { "id": "A0A287AJW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7" } ] } ], "protein_names": [ { "name": "Endosome-associated-trafficking regulator 1", "type": "recommended", "evidence": [ { "id": "A0A287AJW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ENTR1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7", "locus": {} } ], "crossref": [ { "id": "A0A287AJW7", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AJW7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035221", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035221", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026757", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31259", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31259", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31259:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31259:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A287AJW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3U1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3U1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3U1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGA5", "url": "https://www.uniprot.org/uniprotkb/A0A287BGA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGA5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGYARRPGVTPLSRARSLVIPDDDKLEDLSEANPFSFKEFLKTKNLGLSKEDTDGRVYSKEATRHALGLDRDSPASQTAGYGLDYQQPFFEDPTGAGDLLDEDEDEDEGWHGAYLPSTVEQTHSSRGAASTSPCSTYVSFFSNPSELVGPESLPSWTPSDAELRGSPAGSPSTDFAAHGEALGDRRLRTLQISYEALKDENSKLRRKLTEVQSFSETQTEMVRTLERQLEAKMMKEERDFHDLESAVRQVEQNLELMTKRAVKAENHVVKLKQEVSLLQAQVSNLKRENEALRAGQGASLTVVKQNTDVALQNLRVVMHNAHASIRQLVSGAETLNLVAEILKSIDRISEIKDQEES", "length": 358, "header": "tr|A0A287AJW7-1|A0A287AJW7_PIG Isoform 1 of Endosome-associated-trafficking regulator 1 OS=Sus scrofa OX=9823 GN=ENTR1 PE=3 SV=2 CANONICAL=A0A287AJW7-1" }, "isoforms": [ { "isoform_ac": "A0A287AJW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7/entry#A0A287AJW7-1", "sequence": { "sequence": "MAGYARRPGVTPLSRARSLVIPDDDKLEDLSEANPFSFKEFLKTKNLGLSKEDTDGRVYSKEATRHALGLDRDSPASQTAGYGLDYQQPFFEDPTGAGDLLDEDEDEDEGWHGAYLPSTVEQTHSSRGAASTSPCSTYVSFFSNPSELVGPESLPSWTPSDAELRGSPAGSPSTDFAAHGEALGDRRLRTLQISYEALKDENSKLRRKLTEVQSFSETQTEMVRTLERQLEAKMMKEERDFHDLESAVRQVEQNLELMTKRAVKAENHVVKLKQEVSLLQAQVSNLKRENEALRAGQGASLTVVKQNTDVALQNLRVVMHNAHASIRQLVSGAETLNLVAEILKSIDRISEIKDQEES", "length": 358, "header": "tr|A0A287AJW7-1|A0A287AJW7_PIG Isoform 1 of Endosome-associated-trafficking regulator 1 OS=Sus scrofa OX=9823 GN=ENTR1 PE=3 SV=2 CANONICAL=A0A287AJW7-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 1319729, "end_pos": 1313738, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063887.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063887.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044303.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044303.2" } ] } }, { "isoform_ac": "A0A287B3U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7/entry#A0A287B3U1-1", "sequence": { "sequence": "MAGYARRPGVTPLSRARSLVIPDAPAFYERRSCLPQLDCERPQGRDLESHLFGIRPTFMCYVPSPVLASVGDTDFGCGKGQCAKQGPARVQNTHFGDDKLEDLSEANPFSFKEFLKTKNLGLSKEDTDGRVYSKEATRHALGLDRDSPASQTAGYGLDYQQPFFEDPTGAGDLLDEDEDEDEGWHGAYLPSTVEQTHSSRGAASTSPCSTYVSFFSNPSELVGPESLPSWTPSDAECVAPAGSPSTDFAAHGEALGDRRLRTLQISYEALKDENSKLRRKLTEVQSFSETQTEMVRTLERQLEAKMMKEERDFHDLESAVRQVEQNLELMTKRAVKAENHVVKLKQEVSLLQAQVSNLKRENEALRAGQGASLTVVKQNTDVALQNLRVVMHNAHASIRQLVSGAETLNLVAEILKSIDRISEIKDQEES", "length": 430, "header": "tr|A0A287B3U1-1|A0A287AJW7_PIG Computationally mapped isoform of Endosome-associated-trafficking regulator 1 OS=Sus scrofa OX=9823 GN=ENTR1 PE=3 SV=2 CANONICAL=A0A287AJW7-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 1319729, "end_pos": 1313738, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061380.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061380.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050790.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050790.2" } ] } }, { "isoform_ac": "A0A287BGA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7/entry#A0A287BGA5-1", "sequence": { "sequence": "MAGYARRPGVTPLSRARSLVIPDAPAFYERRSCLPQLDCERPQGRDLESHLFGIRPTFMCYVPSPVLASVGDTDDKLEDLSEANPFSFKEFLKTKNLGLSKEDTDGRVYSKEATRHALGLDRDSPASQTAGYGLDYQQPFFEDPTGAGDLLDEDEDEDEGWHGAYLPSTVEQTHSSRGAASTSPCSTYVSFFSNPSELVGPESLPSWTPSDAECVAPAGSPSTDFAAHGEALGDRRLRTLQISYEALKDENSKLRRKLTEVQSFSETQTEMVRTLERQLEAKMMKEERDFHDLESAVRQVEQNLELMTKRAVKAENHVVKLKQEVSLLQAQVSNLKRENEALRAGQGASLTVVKQNTDVALQNLRVVMHNAHASIRQLVSGAETLNLVAEILKSIDRISEIKDQEES", "length": 407, "header": "tr|A0A287BGA5-1|A0A287BGA5_PIG Computationally mapped isoform of Endosome-associated-trafficking regulator 1 OS=Sus scrofa OX=9823 GN=ENTR1 PE=3 SV=2 CANONICAL=A0A287AJW7-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 1319729, "end_pos": 1313738, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055182.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055182.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055620.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055620.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B3U1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3U1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7" } ], "pmid": "" }, { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7" } ], "pmid": "" }, { "name": "retromer complex", "id": "GO:0030904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030904", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "endocytic recycling", "id": "GO:0032456", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032456", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7" } ], "pmid": "" }, { "name": "positive regulation of protein localization to cilium", "id": "GO:1903566", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903566", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7" } ], "pmid": "" }, { "name": "regulation of cytokinesis", "id": "GO:0032465", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032465", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7" } ], "pmid": "" }, { "name": "positive regulation of cilium assembly", "id": "GO:0045724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045724", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], 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{ "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287APB2-1", "uniprot_ac": "A0A287APB2", "uniprot_id": "A0A287APB2_PIG", "mass": { "chemical_mass": 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"Protein" ] }, { "id": "A0A287B8Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B8Y9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8Y9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BB84", "url": "https://www.uniprot.org/uniprotkb/A0A287BB84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BB84-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BB84-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATSSIRRQMKNIVNNYSEAEVKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMAWRRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENVFAIQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEERLKAERAQALKTKERMAQVATGMGSHQVAFGRGSSQPNLSTSYSEQEYGKAGGSPASYHGSTSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMALEESRRDTVKGPAKKEHGCHPPQTTLLDLMDALPGSGPAAQKAEPWGPSTSAGQTNPWGGPAAQASASDPWPAFGAKPAASVDPWGVPTGASTHSVSKGSDPWAAPQQPAPTAGKATDAWAVASAARPTSASGAFDLFSNLNGTAKDDFSEFDSLRTAQKTAKAASPPAQSSGTASPDALESQPLTVTSSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAAAASAPVNPFQVNQPQPLTLNQLRGSPILGSSASFGPGPGVEPVAVASVPSAASHPALGPSGPSLTPLGPAAVGMVGTMAVPPSAAQATGTTNPFLL", "length": 582, "header": "tr|A0A287APB2-1|A0A287APB2_PIG Isoform 1 of Epsin 2 OS=Sus scrofa OX=9823 GN=EPN2 PE=3 SV=1 CANONICAL=A0A287APB2-1" }, "isoforms": [ { "isoform_ac": "A0A287APB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2/entry#A0A287APB2-1", "sequence": { "sequence": "MATSSIRRQMKNIVNNYSEAEVKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMAWRRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENVFAIQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEERLKAERAQALKTKERMAQVATGMGSHQVAFGRGSSQPNLSTSYSEQEYGKAGGSPASYHGSTSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMALEESRRDTVKGPAKKEHGCHPPQTTLLDLMDALPGSGPAAQKAEPWGPSTSAGQTNPWGGPAAQASASDPWPAFGAKPAASVDPWGVPTGASTHSVSKGSDPWAAPQQPAPTAGKATDAWAVASAARPTSASGAFDLFSNLNGTAKDDFSEFDSLRTAQKTAKAASPPAQSSGTASPDALESQPLTVTSSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAAAASAPVNPFQVNQPQPLTLNQLRGSPILGSSASFGPGPGVEPVAVASVPSAASHPALGPSGPSLTPLGPAAVGMVGTMAVPPSAAQATGTTNPFLL", "length": 582, "header": "tr|A0A287APB2-1|A0A287APB2_PIG Isoform 1 of Epsin 2 OS=Sus scrofa OX=9823 GN=EPN2 PE=3 SV=1 CANONICAL=A0A287APB2-1" }, "locus": { "chromosome": "12", "start_pos": 60199165, "end_pos": 60174040, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056266.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056266.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045740.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045740.1" } ] } }, { "isoform_ac": "A0A287B8Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2/entry#A0A287B8Y9-1", "sequence": { "sequence": "MVVIQTSSPRRVHFAGRRLACGFTRCLSHKPQNRNVRCFQKKLVASPFVWSAVCVVRSRLGIRTQSWLPASRTRGAGRGHDRLRPRPRPAAEAEARRGPSLPGAGTLLPSLKGSASGATEPKMATSSIRRQMKNIVNNYSEAEVKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMAWRRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENVFAIQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEERLKAERAQALKTKERMAQVATGMGSHQVAFGRGSSQPNLSTSYSEQEYGKAGGSPASYHGSTSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMALEESRRDTVKGPAKKEHGCHPPQTTLLDLMDALPGSGPAAQKAEPWGPSTSAGQTNPWGGPAAQASASDPWPAFGAKPAASVDPWGVPTGASTHSVSKGSDPWAAPQQPAPTAGKATDAWAVASAARPTSASGAFDLFSNLNGTAKDDFSEFDSLRTAQKTAKAASPPAQSSGTASPDALESQPLTVTSSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAAAASAPVNPFQVNQPQPLTLNQLRGSPILGSSASFGPGPGVEPVAVASVPSAASHPALGPSGPSLTPLGPAAVGMVGTMAVPPSAAQATGTTNPFLL", "length": 704, "header": "tr|A0A287B8Y9-1|A0A287APB2_PIG Computationally mapped isoform of Epsin 2 OS=Sus scrofa OX=9823 GN=EPN2 PE=3 SV=2 CANONICAL=A0A287APB2-1" }, "locus": { "chromosome": "12", "start_pos": 60226363, "end_pos": 60174040, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054551.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054551.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052955.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052955.2" } ] } }, { "isoform_ac": "A0A287BB84-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2/entry#A0A287BB84-1", "sequence": { "sequence": "MATSSIRRQMKNIVNNYSEAEVKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMAWRRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENVFAIQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEERLKAERAQALKTKERMAQVATGMGSHQVAFGRGSSQPNLSTSYSEQEYGKAGGSPASYHGSPEASLCPQHRLGAPLGQSEEPQPPSQRPPLLPHLGPAPRPDGDCSQPCLACDRAARATSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMALKKAHGCHPPQTTLLDLMDALPGSGPAAQKAEPWGPSTSAGQTNPWGGPAAQASASDPWPAFGAKPAASVDPWGVPTGASTHSVSKGSDPWAAPQQPAPTAGKATDAWAVASAARPTSASGAFDLFSNLNGTAKDDFSEFDSLRTAQKTAKAASPPAQSSGTASPDALESQPLTVTSSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAAAASAPVNPFQVNQPQPLTLNQLRGSPILGSSASFGPGPGVEPVAVASVPSAASHPALGPSGPSLTPLGPAAVGMVGTMAVPPSAAQATGTTNPFLL", "length": 627, "header": "tr|A0A287BB84-1|A0A287BB84_PIG Computationally mapped isoform of Epsin 2 OS=Sus scrofa OX=9823 GN=EPN2 PE=3 SV=2 CANONICAL=A0A287APB2-1" }, "locus": { "chromosome": "12", "start_pos": 60199165, "end_pos": 60174040, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054471.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054471.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053594.3", "url": "https://www.ensembl.org/id/ENSSSCP00000053594.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 363, "start_aa": "Thr", "end_pos": 363, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr363", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B8Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B8Y9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8856825", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856825", "resource": "Reactome", "description": "Cargo recognition for clathrin-mediated endocytosis" }, { "id": "R-SSC-8856828", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "resource": "Reactome", "description": "Clathrin-mediated endocytosis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AC58J3E6-1", "protein_name": "Epsin-2 isoform X1", "gene_name": "epn2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPSSTIRRQMKNVVNNYSEPEKKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKALTLLDYLIKTGSERVALQCKENIFAIQTLKDFQYIDRDGKDQGINVREKSKQLVVLLKDDDRLKGERSQALKTKERMAQVATSVGSNNQIGFGRGSSQPNLSTSYSEEYGKSEGSPASYHGSTSPNASSELEQARPQTSGEEELQLQLALAMSREAAEQEERMRRGDDLRLQMALEESRKDTSTGKVSKKKKEALMSVVVGVCAQPPQSSLMDLMDAVPEGHANQGTDPWGAGAAAAAGPTSDPWQSYGAAPKPAAPVDPWGLPGASSSATPVKSTDPWGSSSAPAAADPWGPMPATRPKAPATVGSFDLFSTPNGSSREDFSEFDSIRSSALTGDGRGSSALPSQASLSIGSDLFEVPSGPTRKTPESFLGPNAALVNLDSLVSKPLQQAPVSNPFLAGASGVASAPVPAPAPAPAAQVNPFQVNQPQPPTLNQMRVSPMMGMSAQGFNSMIQRSNEPLPLSSLPPGGPVSMVPMTGMAPLGPMGQMMPSMGIPASMPQPLMSTGLPPTGAAAQPGSTTNPFLL", "length": 602 }, "evidence": [ { "id": "A0A287APB2", "url": "https://omabrowser.org/oma/group/A0A287APB2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O95208-1", "protein_name": "Epsin-2", "gene_name": "EPN2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVWKRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGINVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTSHSEQEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQSEELQPLSQRHPFLPHLGLASRPNGDWSQPCLTCDRAARATSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNPFLL", "length": 641 }, "evidence": [ { "id": "A0A287APB2", "url": "https://omabrowser.org/oma/group/A0A287APB2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CHU3-1", "protein_name": "Epsin-2", "gene_name": "Epn2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVWKRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGINVREKSKQLVALLKDEERLKVERVQALKTKERMAQVATGVGSNQITFGRGSSQPNLSTSYSEQEYGKAGGSPASYHGSTSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQSSESVQTARGSKEERLRRGDDLRLQMALEESRRDTVKVPKKKEAKACCKPGSHSQQTTLLDLMDALPSSGPVTQKTEPWSAGASANQTNPWGGTVAPSNITDPWPSFGTKPAASVDPWGVPTTASTQSVPKNSDPWAASQQPASNAGKTTDAWGAAKPSSASGSFELFSNFNGTVKDDFSEFDNLRTSKKPAESGASVPPQDSRTTSPDLFESQSLTSASSKPSSARKTPESFLGPNAALVNLDSLVTKPAPPAQSLNPFLAPGAAAPAPVNPFQVNQPQPLTLNQLRGSPVLGSSASFGSGPGVETVAPMTSVAPHSSVGASGSSLTPLGPTAMNMVGSVGIPPSAAQSTGTTNPFLL", "length": 595 }, "evidence": [ { "id": "A0A287APB2", "url": "https://omabrowser.org/oma/group/A0A287APB2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287APB2", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2" } ], "pmid": "" }, { "name": "clathrin vesicle coat", "id": "GO:0030125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030125", "evidence": [ { "database": "UniProtKB", "id": "A0A287APB2", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2" } ], "pmid": "" }, { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A287APB2", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287APB2", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "A0A287APB2", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2" } ], "pmid": "" }, { "name": "phospholipid binding", "id": "GO:0005543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005543", "evidence": [ { "database": "UniProtKB", "id": "A0A287APB2", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2" } ], "pmid": "" }, { "name": "clathrin binding", "id": "GO:0030276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030276", "evidence": [ { "database": "UniProtKB", "id": "A0A287APB2", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "A0A287APB2", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2" } ], "pmid": "" }, { "name": "positive regulation of Notch signaling pathway", "id": "GO:0045747", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045747", "evidence": [ { "database": "UniProtKB", "id": "A0A287APB2", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2" } ], "pmid": "" }, { "name": "negative regulation of vascular endothelial growth factor receptor signaling pathway", "id": "GO:0030948", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030948", "evidence": [ { "database": "UniProtKB", "id": "A0A287APB2", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2" } ], "pmid": "" }, { "name": "negative regulation of sprouting angiogenesis", "id": "GO:1903671", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903671", "evidence": [ { "database": "UniProtKB", "id": "A0A287APB2", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 393, "end_pos": 395, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287APB2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 582, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287APB2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287APB2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287APB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APB2" }, { "id": "PS50942", "database": 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"sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AQK0-1", "uniprot_ac": "A0A287AQK0", "uniprot_id": "A0A287AQK0_PIG", "mass": { "chemical_mass": 53044.0, "monoisotopic_mass": 53044.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100517659", "type": "recommended", "evidence": [ { "id": "A0A287AQK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0" } ] }, { "name": "LOC100624852", "type": "recommended", "evidence": [ { "id": "A0A287AQK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0" } ] }, { "name": "LOC100517659", "type": "synonym", "evidence": [ { "id": "A0A287AQK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0" } ] }, { "name": "LOC100624852", "type": "synonym", "evidence": [ { "id": "A0A287AQK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A287AQK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AQK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100624852", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0", "locus": {} } ], "crossref": [ { "id": "IPR026271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050694", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050694", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14224", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14224", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14224:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14224:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27091", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27091", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZTE8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZTE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AP56", "url": "https://www.uniprot.org/uniprotkb/A0A287AP56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AP56-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP56-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWC9", "url": "https://www.uniprot.org/uniprotkb/A0A287AWC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWC9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BMD9", "url": "https://www.uniprot.org/uniprotkb/A0A287BMD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BMD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BMD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2A8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2A8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2A8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2A8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F717", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F717", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F717-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F717-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8E1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8E1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8E1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8E1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9Z8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9Z8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9Z8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9Z8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFZ4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHA5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHA5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUY5", "url": "https://www.uniprot.org/uniprotkb/F1SUY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUY5-1", "url": "https://www.uniprot.org/uniprotkb/F1SUY5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVWNPLRLRDLAGMSLLKDEALAITALEYLPTELFPPLFMEAFYGSHRETLKAMVQAWPFGRLPLGGLMQFPHARALQAVLDGLDVLLAQRVHPRRCKLRVLDLRNTSHDFWSMWSGARAPMCSRMLKAPVAEDRSRAEHPLAPMEIFIDLCLSEKTLDGFLSYFMSWVEERLLSIHLCCKKLRVLSMDKKNIQVLRMVRLDCIQEVEVSCTWPLSTLATFAPLLGQMSNMQRLLVSRVHVSAPEEQEQHCLQFTSQFLRLQHLRDLHLEAPSFLEGRLDQMLRCLMSPLENLAITNCLLTESDVTHLSQCPSISQLKGLDLSGITLTHFSPYILQVLLEKVASTLQELYLEKCGIVDPQLEAILPALSHCSALTSFSVRGNLLSLAIVQKVLGCTTGLPGLCQELYPPPRESYSSLGTLLPGRLAQVRAELLESLRALGRPRTIWISYSPCPHCGNDAFKHAELTHCIN", "length": 471, "header": "tr|A0A287AQK0-1|A0A287AQK0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100624852 PE=3 SV=2 CANONICAL=A0A287AQK0-1" }, "isoforms": [ { "isoform_ac": "A0A286ZTE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0/entry#A0A286ZTE8-1", "sequence": { "sequence": "MNLTRFHEVVGSIFGLACWSGIQRYSKMSVWNPLRLRDLAGMSLLKDEALAITALEYLPTELFPPLFMEAFYGSHRETLKAMVQAWPFGRLPLGGLMQFPHARALQAVLDGLDVLLAQRVHPRRCKLRVLDLRNTSHDFWSMWSGARAPMCSRMLKAPVAEDRSRAEHPLAPMEIFIDLCLSEKTLDGFLSYFMSWVEERLLSIHLCCKKLRVLSMDKKNIQVLRMVRLDCIQEVEVSCTWPLSTLATFAPLLGQMSNMQRLLVSRVHVSAPEEQEQHCLQFTSQFLRLQHLRDLHLEAPSFLEGRLDQMLRCLMSPLENLAITNCLLTESDVTHLSQCPSISQLKGLDLSGITLTHFSPYILQVLLEKVASTLQELYLEKCGIVDPQLEAILPALSHCSALTSFSVRGNLLSLAIVQKVLGCTTGLPGLCQELYPPPRESYSSLGTLLPGRLAQVRAELLESLRALGRPRTIWISYSPCPHCGNDAFKHAERIVCSCSSDP", "length": 502, "header": "tr|A0A286ZTE8-1|A0A287AQK0_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100624852 PE=3 SV=2 CANONICAL=A0A287AQK0-1" }, "locus": { "chromosome": "6", "start_pos": 72786560, "end_pos": 72782197, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044733.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044733.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034923.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034923.2" } ] } }, { "isoform_ac": "A0A287AP56-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0/entry#A0A287AP56-1", "sequence": { "sequence": "VMGKGWISGWLPQDSFSRRAKMSVWNPLRLRDLAGMSLLKDEALAITALEYLPTELFPPLFMEAFYGSHRETLKAMVQAWPFGRLPLGGLMQFPHARALQAVLDGLDVLLAQRVHPRRCKLRVLDLRNTSHDFWSMWSGARAPMCSRMLKKTLDGFLSYFMSWVEERLLSIHLCCKKLRVLSMDKKNIQVLRMVRLDCIQEVEVSCTWPLSTLATFAPLLGQMSNMQRLLVSRVHVSAPEEQEQHCLQFTSQFLRLQHLRDLHLEAPSFLEGRLDQMLRCLMSPLENLAITNCLLTESDVTHLSQCPSISQLKGLDLSGITLTHFSPYILQVLLEKVASTLQELYLEKCGIVDPQLEAILPALSHCSALTSFSVRGNLLSLAIVQKVLGCTTGLPGLCQELYPPPRESYSSLGTLLPGRLAQVRAELLESLRALGRPRTIWISYSPCPHCGNDLVVSMQRFPLFTLKMKSRT", "length": 472, "header": "tr|A0A287AP56-1|A0A287AP56_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100517659 PE=3 SV=3 CANONICAL=A0A287AQK0-1" }, "locus": { "chromosome": "6", "start_pos": 72785850, "end_pos": 72782660, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038001.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038001.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045797.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045797.3" } ] } }, { "isoform_ac": "A0A287AQK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0/entry#A0A287AQK0-1", "sequence": { "sequence": "MSVWNPLRLRDLAGMSLLKDEALAITALEYLPTELFPPLFMEAFYGSHRETLKAMVQAWPFGRLPLGGLMQFPHARALQAVLDGLDVLLAQRVHPRRCKLRVLDLRNTSHDFWSMWSGARAPMCSRMLKAPVAEDRSRAEHPLAPMEIFIDLCLSEKTLDGFLSYFMSWVEERLLSIHLCCKKLRVLSMDKKNIQVLRMVRLDCIQEVEVSCTWPLSTLATFAPLLGQMSNMQRLLVSRVHVSAPEEQEQHCLQFTSQFLRLQHLRDLHLEAPSFLEGRLDQMLRCLMSPLENLAITNCLLTESDVTHLSQCPSISQLKGLDLSGITLTHFSPYILQVLLEKVASTLQELYLEKCGIVDPQLEAILPALSHCSALTSFSVRGNLLSLAIVQKVLGCTTGLPGLCQELYPPPRESYSSLGTLLPGRLAQVRAELLESLRALGRPRTIWISYSPCPHCGNDAFKHAELTHCIN", "length": 471, "header": "tr|A0A287AQK0-1|A0A287AQK0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100624852 PE=3 SV=2 CANONICAL=A0A287AQK0-1" }, "locus": { "chromosome": "6", "start_pos": 72838185, "end_pos": 72834335, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101353.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101353.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076707.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076707.1" } ] } }, { "isoform_ac": "A0A287AWC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0/entry#A0A287AWC9-1", "sequence": { "sequence": "MNLTRFHEVVGSIFGLACWSGIQRYSKMSVWNPLRLRDLAGMSLLKDEALAITALEYLPTELFPPLFMEAFYGSHRETLKAMVQAWPFGRLPLGGLMQFPHARALQAVLDGLDVLLAQRVHPRRCKLRVLDLRNTSHDFWSMWSGARAPMCSRMLKAPVAEDRSRAEHPLAPMEIFIDLCLSEKTLDGFLSYFMSWVEERLLSIHLCCKKLRVLSMDKKNIQVLRMVRLDCIQEVEVSCTWPLSTLATFAPLLGQMSNMQRLLVSRVHVSAPEEQEQHCLQFTSQFLRLQHLRDLHLEAPSFLEGRLDQMLRCLMSPLENLAITNCLLTESDVTHLSQCPSISQLKGLDLSGITLTHFSPYILQVLLEKVASTLQELYLEKCGIVDPQLEAILPALSHCSALTSFSVRGNLLSLAIVQKVLGCTTGLPGLCQELYPPPRESYSSLGTLLPGRLAQVRAELLESLRALGRPRTIWISYSPCPHCGNDAFKHAERIVYS", "length": 497, "header": "tr|A0A287AWC9-1|A0A287AWC9_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100624852 PE=3 SV=2 CANONICAL=A0A287AQK0-1" }, "locus": { "chromosome": "6", "start_pos": 72838912, "end_pos": 72835328, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050339.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050339.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048442.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048442.2" } ] } }, { "isoform_ac": "A0A287BMD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0/entry#A0A287BMD9-1", "sequence": { "sequence": "MPSKMSVWNPLRLRDLAGMSLLKDEALAITALEYLPTELFPPLFMEAFYGSHRETLKAMVQAWPFGRLPLGGLMQFPHARALQAVLDGLDVLLAQRVHPRRCKLRVLDLRNTSHDFWSMWSGARAPMCSRMLKAPVAEDRSRAEHPLAPMEIFIDLCLSEKTLDGFLSYFMSWVEERLLSIHLCCKKLRVLSMDKKNIQVLRMVRLDCIQEVEVSCTWPLSTLATFAPLLGQMSNMQRLLVSRVHVSAPEEQEQHCLQFTSQFLRLQHLRDLHLEAPSFLEGRLDQMLRCLMSPLENLAITNCLLTESDVTHLSQCPSISQLKGLDLSGITLTHFSPYILQVLLEKVASTLQELYLEKCGIVDPQLEAILPALSHCSALTSFSVRGNLLSLAIVQKVLGCTTGLPGLCQELYPPPRESYSSLGTLLPGRLAQVRAELLESLRALGRPRTIWISYSPCPHCGNDAFKHAERIVYS", "length": 474, "header": "tr|A0A287BMD9-1|A0A287BMD9_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100624852 PE=3 SV=1 CANONICAL=A0A287AQK0-1" }, "locus": { "chromosome": "6", "start_pos": 72785776, "end_pos": 72782875, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098481.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098481.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077703.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077703.1" } ] } }, { "isoform_ac": "A0A5G2R2A8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0/entry#A0A5G2R2A8-1", "sequence": { "sequence": "MSVWNPLRLRDLAGMSLLKDEALAITALEYLPTELFPPLFMEAFYGSHRETLKAMVQAWPFGRLPLGGLMQFPHARALQAVLDGLDVLLAQRVHPRRCKLRVLDLRNTSHDFWSMWSGARAPMCSRMLKAPVAEDRSRAEHPLAPMEIFIDLCLSEKTLDGFLSYFMSWVEERLLSIHLCCKKLRVLSMDKKNIQVLRMVRLDCIQEVEVSCTWPLSTLATFAPLLGQMSNMQRLLVSRVHVSAPEEQEQHCLQFTSQFLRLQHLRDLHLEAPSFLEGRLDQMLRCLMSPLENLAITNCLLTESDVTHLSQCPSISQLKGLDLSGITLTHFSPYILQVLLEKVASTLQELYLEKCGIVDPQLEAILPALSHCSALTSFSVRGNLLSLAIVQKVLGCTTGLPGLCQELYPPPRESYSSLGTLLPGRLAQVRAELLESLRALGRPRTIWISYSPCPHCGNDAFKHLETHMLELLLDRGV", "length": 477, "header": "tr|A0A5G2R2A8-1|A0A287AQK0_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100624852 PE=3 SV=1 CANONICAL=A0A287AQK0-1" }, "locus": { "chromosome": "6", "start_pos": 72838185, "end_pos": 72834751, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095253.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095253.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076977.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076977.1" } ] } }, { "isoform_ac": "A0A8W4F717-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0/entry#A0A8W4F717-1", "sequence": { "sequence": "KEKKNLDSFSRRAKMSVWNPLRLRDLAGMSLLKDEALAITALEYLPTELFPPLFMEAFYGSHRETLKAMVQAWPFGRLPLGGLMQFPHARALQAVLDGLDVLLAQRVHPRRCKLRVLDLRNTSHDFWSMWSGARAPMCSRMLKAPVAEDRSRAEHPLAPMEIFIDLCLSEKTLDGFLSYFMSWVEERLLSIHLCCKKLRVLSMDKKNIQVLRMVRLDCIQEVEVSCTWPLSTLATFAPLLGQMSNMQRLLVSRVHVSAPEEQEQHCLQFTSQFLRLQHLRDLHLEAPSFLEGRLDQMLRCLMSPLENLAITNCLLTESDVTHLSQCPSISQLKGLDLSGITLTHFSPYILQVLLEKVASTLQELYLEKCGIVDPQLEAILPALSHCSALTSFSVRGNLLSLAIVQKVLGCTTGLPGLCQELYPPPRESYSSLGTLLPGRLAQVRAELLESLRALGRPRTIWISYSPCPHCGNDAFKHAERIVYS", "length": 484, "header": "tr|A0A8W4F717-1|A0A287AQK0_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100624852 PE=3 SV=1 CANONICAL=A0A287AQK0-1" }, "locus": { "chromosome": "6", "start_pos": 72785776, "end_pos": 72782422, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104090.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104090.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074608.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074608.1" } ] } }, { "isoform_ac": "A0A8W4F8E1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0/entry#A0A8W4F8E1-1", "sequence": { "sequence": "NPMCQARGLTHITMSVWNPLRLRDLAGMSLLKDEALAITALEYLPTELFPPLFMEAFYGSHRETLKAMVQAWPFGRLPLGGLMQFPHARALQAVLDGLDVLLAQRVHPRRCKLRVLDLRNTSHDFWSMWSGARAPMCSRMLKAPVAEDRSRAEHPLAPMEIFIDLCLSEKTLDGFLSYFMSWVEERLLSIHLCCKKLRVLSMDKKNIQVLRMVRLDCIQEVEVSCTWPLSTLATFAPLLGQMSNMQRLLVSRVHVSAPEEQEQHCLQFTSQFLRLQHLRDLHLEAPSFLEGRLDQMLRCLMSPLENLAITNCLLTESDVTHLSQCPSISQLKGLDLSGITLTHFSPYILQVLLEKVASTLQELYLEKCGIVDPQLEAILPALSHCSALTSFSVRGNLLSLAIVQKVLGCTTGLPGLCQELYPPPRESYSSLGTLLPGRLAQVRAELLESLRALGRPRTIWISYSPCPHLC", "length": 470, "header": "tr|A0A8W4F8E1-1|A0A287AQK0_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100624852 PE=3 SV=1 CANONICAL=A0A287AQK0-1" }, "locus": { "chromosome": "6", "start_pos": 72839065, "end_pos": 72835003, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": 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"locus": { "chromosome": "6", "start_pos": 72838185, "end_pos": 72834858, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102571.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102571.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077845.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077845.1" } ] } }, { "isoform_ac": "A0A8W4FFZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0/entry#A0A8W4FFZ4-1", "sequence": { "sequence": "MPSKMSVWNPLRLRDLAGMSLLKDEALAITALEYLPTEETLKAMVQAWPFGRLPLGGLMQFPHARALQAVLDGLDVLLAQRVHPRRCKLRVLDLRNTSHDFWSMWSGARAPMCSRMLKAPVAEDRSRAEHPLAPMEIFIDLCLSEKTLDGFLSYFMSWVEERLLSIHLCCKKLRVLSMDKKNIQVLRMVRLDCIQEVEVSCTWPLSTLATFAPLLGQMSNMQRLLVSRVHVSAPEEQEQHCLQFTSQFLRLQHLRDLHLEAPSFLEGRLDQMLRCLMSPLENLAITNCLLTESDVTHLSQCPSISQLKGLDLSGITLTHFSPYILQVLLEKVASTLQELYLEKCGIVDPQLEAILPALSHCSALTSFSVRGNLLSLAIVQKVLGCTTGLPGLCQELYPPPRESYSSLGTLLPGRLAQVRAELLESLRALGRPRTIWISYSPCPHCGNDAFKHAERIVYS", "length": 459, "header": "tr|A0A8W4FFZ4-1|A0A287AQK0_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100624852 PE=3 SV=1 CANONICAL=A0A287AQK0-1" }, "locus": { "chromosome": "6", "start_pos": 72838234, "end_pos": 72835328, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093688.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093688.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077570.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077570.1" } ] } }, { "isoform_ac": "A0A8W4FHA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0/entry#A0A8W4FHA5-1", "sequence": { "sequence": "FHMSKMSVWNPLRLRDLAGMSLLKDEALAITALEYLPTELFPPLFMEAFYGSHRETLKAMVQAWPFGRLPLGGLMQFPHARALQAVLDGLDVLLAQRVHPRRCKLRVLDLRNTSHDFWSMWSGARAPMCSRMLKAPVAEDRSRAEHPLAPMEIFIDLCLSEKTLDGFLSYFMSWVEERLLSIHLCCKKLRVLSMDKKNIQVLRMVRLDCIQEVEVSCTWPLSTLATFAPLLGQMSNMQRLLVSRVHVSAPEEQEQHCLQFTSQFLRLQHLRDLHLEAPSFLEGRLDQMLRCLMSPLENLAITNCLLTESDVTHLSQCPSISQLKGLDLSGITLTHFSPYILQVLLEKVASTLQELYLEKCGIVDPQLEAILPALSHCSALTSFSVRGNLLSLAIVQKVLGCTTGLPGLCQELYPPPRESYSSLGTLLPGRLAQVRAELLESLRALGRPRTIWISYSPCPHLC", "length": 462, "header": "tr|A0A8W4FHA5-1|A0A287AQK0_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100624852 PE=3 SV=1 CANONICAL=A0A287AQK0-1" }, "locus": { "chromosome": "6", "start_pos": 72786101, "end_pos": 72782375, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105013.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105013.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078704.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078704.1" } ] } }, { "isoform_ac": "F1SUY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0/entry#F1SUY5-1", "sequence": { "sequence": "KEKKKLRCRRAKMSVWNPLRLRDLAGMSLLKDEALAITALEYLPTELFPPLFMEAFYGSHRETLKAMVQAWPFGRLPLGGLMQFPHARALQAVLDGLDVLLAQRVHPRRCKLRVLDLRNTSHDFWSMWSGARAPMCSRMLKAPVAEDRSRAEHPLAPMEIFIDLCLSEKTLDGFLSYFMSWVEERLLSIHLCCKKLRVLSMDKKNIQVLRMVRLDCIQEVEVSCTWPLSTLATFAPLLGQMSNMQRLLVSRVHVSAPEEQEQHCLQFTSQFLRLQHLRDLHLEAPSFLEGRLDQMLRCLMSPLENLAITNCLLTESDVTHLSQCPSISQLKGLDLSGITLTHFSPYILQVLLEKVASTLQELYLEKCGIVDPQLEAILPALSHCSALTSFSVRGNLLSLAIVQKVLGCTTGLPGLCQELYPPPRESYSSLGTLLPGRLAQVRAELLESLRALGRPRTIWISYSPCPHCGNDAFKHAERIVYS", "length": 482, "header": "tr|F1SUY5-1|A0A287AQK0_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100624852 PE=3 SV=4 CANONICAL=A0A287AQK0-1" }, "locus": { "chromosome": "6", "start_pos": 72838687, "end_pos": 72835328, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003827.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003827.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003740.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003740.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R2A8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2A8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0" } ], "pmid": "" }, { "name": "Cul2-RING ubiquitin ligase complex", "id": "GO:0031462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031462", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": 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"Protein" ] }, { "id": "A0A286ZTR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTR9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AJK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJK0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRH4", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1Z6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1Z6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1Z6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"sequence": "MASGDFCSPGEGMELLQQVCSKQLPPCHLREEDLLQNPHFSKLLLSLSQHMDECGLSLILAKEQTQAWKEVRLHKTKWLRFEILHRVIQELLVDYYVKIQDTNLTSEDKKFHETLEQRLLVTELTQLLGPRQETEVPSLLGLEKSDLLELMPPSEDCVWMRARLALEVEELLKKKCFTLLCYHNPDSDSDGETRKAEKVGKLAEVLMDEKQQCQDAKSQQKEQMVLLEKKSATYSQVLLRCLALLQRLLQEHRLKAQSELDRSNAQYLEIKCSTLILKLRIEELKILSDTYTAEKVEVHRLIRDRLEGAIHLQEQDMEKSRQVLNTYEVLGEEFDRLVKEYTQLKQATENKRWALQEFDKAYR", "length": 363, "header": "tr|A0A287AJK0-1|A0A287AJK0_PIG Isoform 1 of HAUS augmin like complex subunit 4 OS=Sus scrofa OX=9823 GN=HAUS4 PE=1 SV=1 CANONICAL=A0A287AJK0-1" }, "locus": { "chromosome": "7", "start_pos": 76097665, "end_pos": 76088199, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044103.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044103.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044059.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044059.1" } ] } }, { "isoform_ac": "A0A287BRH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJK0/entry#A0A287BRH4-1", "sequence": { "sequence": "MASGDFCSPGEGMELLQQVCSKQLPPCHLREEDLLQNPHFSKLLLSLSQHMDECGLSLILAKEQTQAWKEVRLHKTKWLRFEILHRVIQELLVDYYVKIQDTNLTSEDKKDCVWMRARLALEVEELLKKKCFTLLCYHNPDSDSDGETRKAEKVGKLAEVLMDEKQQCQDAKSQQKEQMVLLEKKSATYSQVLLRCLALLQRLLQEHRLKAQSELDRSNAQYLEIKCSTLILKLRIEELKILSDTYTAEKVEVHRLIRDRLEGAIHLQEQDMEKSRQVLNTYEVLGEEFDRLVKEYTQLKQATENKRWALQEFDKAYR", "length": 318, "header": "tr|A0A287BRH4-1|A0A287BRH4_PIG Computationally mapped isoform of HAUS augmin like complex subunit 4 OS=Sus scrofa OX=9823 GN=HAUS4 PE=4 SV=1 CANONICAL=A0A287AJK0-1" }, "locus": { "chromosome": "7", "start_pos": 76097665, "end_pos": 76088199, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055567.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055567.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058777.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058777.1" } ] } }, { "isoform_ac": "A0A5G2R1Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJK0/entry#A0A5G2R1Z6-1", "sequence": { "sequence": "MASGDFCSPGEGMELLQQVCSKQLPPCHLREEDLLQNPHFSKLLLSLSQHMDECGLSLILAKEQTQAWKEVRLHKTKWLRFEILHRVIQELLVDYYVKIQDTNLTSEDKKVLLRCLALLQRLLQEHRLKAQSELDRSNAQYLEIKCSTLILKLRIEELKILSDTYTAEKVEVHRLIRDRLEGAIHLQEQDMEKSRQVLNTYEVLGEEFDRLVKEYTQLKQATENKRWALQEFDKAYR", "length": 237, "header": "tr|A0A5G2R1Z6-1|A0A287AJK0_PIG Computationally mapped isoform of HAUS augmin like complex subunit 4 OS=Sus scrofa OX=9823 GN=HAUS4 PE=1 SV=1 CANONICAL=A0A287AJK0-1" }, "locus": { "chromosome": "7", "start_pos": 76097665, "end_pos": 76088199, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080706.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080706.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071206.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071206.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": 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] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"start_pos": 63429528, "end_pos": 63421226, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046467.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046467.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037343.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037343.3" } ] } }, { "isoform_ac": "A0A287APS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APS9/entry#A0A287APS9-1", "sequence": { "sequence": "MKEEPGGRRDPAPWNMALPRAVLLAGLLVEVASKASGSVDQQPECCVDVVDTNATCPGTSLCGPGCYGRWDEDGTVSCVRCRNGTHSSSECRSRGPQVAACLFLGTLLISAGLILSVAAFFYLKRASKLPGLFYRRSRAPALQPGEAAAMIPPPQSSACQGEDRRPANPRRPGPHPWPARSRRAYKYTCQEPTPRESSCPGQRSTPRGAHTSPCAPPAWHSCWWLALERNTCQVEHRPACPGGEGASTAGTREHAAPAWLCRPRGHAQVPLTSATR", "length": 276, "header": "tr|A0A287APS9-1|A0A287APS9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=RNF223 PE=4 SV=1 CANONICAL=A0A287APS9-1" }, "locus": { "chromosome": "6", "start_pos": 63444653, "end_pos": 63415758, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061995.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061995.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046072.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046072.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A0A8", "url": "https://www.uniprot.org/uniprotkb/A0A287A0A8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" }, { "start_pos": 83, "end_pos": 85, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 53, "end_pos": 55 }, { "start_pos": 83, "end_pos": 85 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AP43-1", "uniprot_ac": "A0A287AP43", "uniprot_id": "A0A287AP43_PIG", "mass": { "chemical_mass": 129502.0, "monoisotopic_mass": 129502.0 }, "refseq": { "ac": "XP_020918509", "name": "ubiquitin carboxyl-terminal hydrolase 28 isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918509" }, "gene_names": [ { "name": "USP28", "type": "recommended", "evidence": [ { "id": "A0A287AP43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43" } ] }, { "name": "USP28", "type": "synonym", "evidence": [ { "id": "XP_020918509", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918509" } ] } ], "protein_names": [ { "name": "Ubiquitin carboxyl-terminal hydrolase 28", "type": "recommended", "evidence": [ { "id": "A0A287AP43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43/entry#names_and_taxonomy" } ] }, { "name": "3.4.19.12", "type": "synonym", "evidence": [ { "id": "A0A287AP43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43/entry#names_and_taxonomy" } ] }, { "name": "Deubiquitinating enzyme 28", "type": "synonym", "evidence": [ { "id": "A0A287AP43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43/entry#names_and_taxonomy" } ] }, { "name": "Ubiquitin thioesterase 28", "type": "synonym", "evidence": [ { "id": "A0A287AP43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43/entry#names_and_taxonomy" } ] }, { "name": "Ubiquitin-specific-processing protease 28", "type": "synonym", "evidence": [ { "id": "A0A287AP43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43/entry#names_and_taxonomy" } ] }, { "name": "ubiquitin carboxyl-terminal hydrolase 28 isoform X6", "type": "synonym", "evidence": [ { "id": "XP_020918509", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918509" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AP43", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "USP28", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43", "locus": { "chromosome": "9", "start_pos": 41417564, "end_pos": 41480994, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015052", "url": "https://www.ensembl.org/id/ENSSSCG00000015052" } ] } } ], "crossref": [ { "id": "A0A287AP43", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AP43", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015052", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015052", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02665", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02665", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14355", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14355", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20487", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20487", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519614", "url": "https://www.ncbi.nlm.nih.gov/gene/100519614", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018200", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018200", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059996", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059996", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24006", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24006", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24006:SF678", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24006:SF678", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00443", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00443", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21909", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21909", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5689880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020918509", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918509", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A0Z7", "url": "https://www.uniprot.org/uniprotkb/A0A287A0Z7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A0Z7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0Z7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AP43", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AP43-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BBP0", "url": "https://www.uniprot.org/uniprotkb/A0A287BBP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BBP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BBP0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BT07", "url": "https://www.uniprot.org/uniprotkb/A0A287BT07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BT07-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT07-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480TDL9", "url": "https://www.uniprot.org/uniprotkb/A0A480TDL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480TDL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TDL9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0TVY0", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TVY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0TVY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TVY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0UNA8", "url": "https://www.uniprot.org/uniprotkb/A0A8D0UNA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0UNA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0UNA8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK38", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK38-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK38-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTAELQQDDAAGAADRHGSSCQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKEPSQDTVATEPSEVEGSAANKEVLAKVIDLTHDNKDDLQAAIALSLLESPKIQTDGRDLNRMPEATSAETKRSKRKRCEVWGENPNPNDWRRVDGWPVGLKNVGNTCWFSAVIQSLFQLPEFRRLVLGYSRPQNALENCPSHAEKRNIVFMQELQYLFALMIGSNRKFVDPSAALDLLKGAFRSPEEQQQDVSEFTHKLLDWLEDAFQLAVNVNSNPRNKSENPMVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGYRNLDECLEGAMVEGDLETLPSDHSVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQIIYMDRYMYRSKELIRSKRECIRKLKEEIKVLQQKLERYVKYGSGPARFPLPDMLKYVIEFASTKPASESTLSQSDACMTSPVSSVHCAASDLTSEESTSKEGTSQDAESTFSSSEDSAHKSKPVNQPLPPSRSSMEMPAHPAPRTVTDEEINFVKTCLQRWRSEIEQDIQDLKNCIASTTQTIEQMYCDPLLRQVPYRLHAVLVHEGQANAGHYWAYIYNQPRQVWLKYNDISVTESSWEELERDSYGGLRNVSAYCLMYINDKLPHCHAESAPNELDQMSGEVEALSVELKHYIQEDNWRFEQEIEEWEEEQSCKIPQMDSSTSSASQEFSPSQESSVASSHGVRCLSSEHAVIVKEQTAQAIANTARAYEKSGVEAALSELKEAEPKTPLPPETHPAEQSEQPPQAHDAESAAQPNSEVSEVEIPSVGRILVRSDADGYDEEVMLSPAMQGVILAIAKARQTFDRDGSEAGLIKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYDERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLLKGPRRGVKESVIALYRRKCLLELNAKAASLFETNDEHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEIMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCSRFAAVMESIQGVSTVTVK", "length": 1145, "header": "tr|A0A287AP43-1|A0A287AP43_PIG Isoform 1 of Ubiquitin carboxyl-terminal hydrolase 28 OS=Sus scrofa OX=9823 GN=USP28 PE=1 SV=3 CANONICAL=A0A287AP43-1" }, "isoforms": [ { "isoform_ac": "A0A287A0Z7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43/entry#A0A287A0Z7-1", "sequence": { "sequence": "MLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKEPSQDTVATEPSEVEGSAANKEVLAKVIDLTHDNKDDLQAAIALSLLESPKIQTDGRDLNRMPEATSAETKRSKRKRCEVWGENPNPNDWRRVDGWPVGLKNVGNTCWFSAVIQSLFQLPEFRRLVLGYSRPQNALENCPSHAEKRNIVFMQELQYLFALMIGSNRKFVDPSAALDLLKGAFRSPEEQQQDVSEFTHKLLDWLEDAFQLAVNVNSNPRNKSENPMVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGYRNLDECLEGAMVEGDLETLPSDHSVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQIIYMDRYMYRSKELIRSKRECIRKLKEEIKVLQQKLERYVKYGSGPARFPLPDMLKYVIEFASTKPASESTLSQSDACMTSPVSSVHCAASDLTSEESTSKEGTSQDAESTFSSSEDSAHKSKPVNQPLPPSRSSMEMPAHPAPRTVTDEEINFVKTCLQRWRSEIEQDIQDLKNCIASTTQTIEQMYCDPLLRQVPYRLHAVLVHEGQANAGHYWAYIYNQPRQVWLKYNDISVTESSWEELERDSYGGLRNVSAYCLMYINDKLPHCHAESAPNELDQMSGEVEALSVELKHYIQEDNWRFEQEIEEWEEEQSCKIPQMDSSTSSASQEFSPSQESSVASSHGVRCLSSEHAVIVKEQTAQAIANTARAYEKSGVEAALSELKEAEPKTPLPPETHPAEQSEQPPQAHDAESAAQPNSEVMLSPAMQGVILAIAKARQTFDRDGSEAGLIKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYDERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLLKGPRRGVKESVIALYRRKCLLELNAKAASLFETNDEHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEIMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCSRFAAVMESIQGVSTVTVK", "length": 1099, "header": "tr|A0A287A0Z7-1|A0A287AP43_PIG Computationally mapped isoform of Ubiquitin carboxyl-terminal hydrolase 28 OS=Sus scrofa OX=9823 GN=USP28 PE=1 SV=3 CANONICAL=A0A287AP43-1" }, "locus": { "chromosome": "9", "start_pos": 41464567, "end_pos": 41418633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065055.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065055.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037599.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037599.3" } ] } }, { "isoform_ac": "A0A287AP43-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43/entry#A0A287AP43-1", "sequence": { "sequence": "MTAELQQDDAAGAADRHGSSCQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKEPSQDTVATEPSEVEGSAANKEVLAKVIDLTHDNKDDLQAAIALSLLESPKIQTDGRDLNRMPEATSAETKRSKRKRCEVWGENPNPNDWRRVDGWPVGLKNVGNTCWFSAVIQSLFQLPEFRRLVLGYSRPQNALENCPSHAEKRNIVFMQELQYLFALMIGSNRKFVDPSAALDLLKGAFRSPEEQQQDVSEFTHKLLDWLEDAFQLAVNVNSNPRNKSENPMVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGYRNLDECLEGAMVEGDLETLPSDHSVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQIIYMDRYMYRSKELIRSKRECIRKLKEEIKVLQQKLERYVKYGSGPARFPLPDMLKYVIEFASTKPASESTLSQSDACMTSPVSSVHCAASDLTSEESTSKEGTSQDAESTFSSSEDSAHKSKPVNQPLPPSRSSMEMPAHPAPRTVTDEEINFVKTCLQRWRSEIEQDIQDLKNCIASTTQTIEQMYCDPLLRQVPYRLHAVLVHEGQANAGHYWAYIYNQPRQVWLKYNDISVTESSWEELERDSYGGLRNVSAYCLMYINDKLPHCHAESAPNELDQMSGEVEALSVELKHYIQEDNWRFEQEIEEWEEEQSCKIPQMDSSTSSASQEFSPSQESSVASSHGVRCLSSEHAVIVKEQTAQAIANTARAYEKSGVEAALSELKEAEPKTPLPPETHPAEQSEQPPQAHDAESAAQPNSEVSEVEIPSVGRILVRSDADGYDEEVMLSPAMQGVILAIAKARQTFDRDGSEAGLIKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYDERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLLKGPRRGVKESVIALYRRKCLLELNAKAASLFETNDEHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEIMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCSRFAAVMESIQGVSTVTVK", "length": 1145, "header": "tr|A0A287AP43-1|A0A287AP43_PIG Isoform 1 of Ubiquitin carboxyl-terminal hydrolase 28 OS=Sus scrofa OX=9823 GN=USP28 PE=1 SV=3 CANONICAL=A0A287AP43-1" }, "locus": { "chromosome": "9", "start_pos": 41480820, "end_pos": 41418633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060517.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060517.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045668.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045668.3" } ] } }, { "isoform_ac": "A0A287BBP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43/entry#A0A287BBP0-1", "sequence": { "sequence": "MLNEDFKADWDGNASCQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKEPSQDTVATEPSEVEGSAANKEVLAKVIDLTHDNKDDLQAAIALSLLESPKIQTDGRDLNRMPEATSAETKRSKRKRCEVWGENPNPNDWRRVDGWPVGLKNVGNTCWFSAVIQSLFQLPEFRRLVLGYSRPQNALENCPSHAEKRNIVFMQELQYLFALMIGSNRKFVDPSAALDLLKGAFRSPEEQQQDVSEFTHKLLDWLEDAFQLAVNVNNPRNKSENPMVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGYRNLDECLEGAMVEGDLETLPSDHSVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQIIYMDRYMYRSKELIRSKRECIRKLKEEIKVLQQKLERYVKYGSGPARFPLPDMLKYVIEFASTKPASESTLSQSDACMTSPVSSVHCAASDLTSEESTSKEGTSQDAESTFSSSEDSAHKSKPVNQPLPPSRSSMEMPAHPAPRTVTDEEINFVKTCLQRWRSEIEQDIQDLKNCIASTTQTIEQMYCDPLLRQVPYRLHAVLVHEGQANAGHYWAYIYNQPRQVWLKYNDISVTESSWEELERDSYGGLRNVSAYCLMYINDKLPHCHAESAPNELDQMSGEVEALSVELKHYIQEDNWRFEQEIEEWEEEQSCKIPQMDSSTSSASQEFSPSQESSVASSHGVRCLSSEHAVIVKEQTAQAIANTARAYEKSGVEAALSELKEAEPKTPLPPETHPAEQSEQPPQAHDAESAAQPNSEVMLSPAMQGVILAIAKARQTFDRDGSEAGLIKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYDESIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLLKGPRRGVKESVIALYRRKCLLELNAKAASLFETNDEHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEIMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCSRFAAVMESIQGVSTVTVK", "length": 1112, "header": "tr|A0A287BBP0-1|A0A287BBP0_PIG Computationally mapped isoform of Ubiquitin carboxyl-terminal hydrolase 28 OS=Sus scrofa OX=9823 GN=USP28 PE=1 SV=3 CANONICAL=A0A287AP43-1" }, "locus": { "chromosome": "9", "start_pos": 41465360, "end_pos": 41418633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062195.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062195.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053950.3", "url": "https://www.ensembl.org/id/ENSSSCP00000053950.3" } ] } }, { "isoform_ac": "A0A287BT07-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43/entry#A0A287BT07-1", "sequence": { "sequence": "MLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKEPSQDTVATEPSEVEGSAANKEVLAKVIDLTHDNKDDLQAAIALSLLESPKIQTDGRDLNRMPEATSAETKRSKRKRCEVWGENPNPNDWRRVDGWPVGLKNVGNTCWFSAVIQSLFQLPEFRRLVLGYSRPQNALENCPSHAEKRNIVFMQELQYLFALMIGSNRKFVDPSAALDLLKGAFRSPEEQQQDVSEFTHKLLDWLEDAFQLAVNVNSNPRNKSENPMVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGYRNLDECLEGAMVEGDLETLPSDHSVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQIIYMDRYMYRSKELIRSKRECIRKLKEEIKVLQQKLERYVKYGSGPARFPLPDMLKYVIEFASTKPASESTLSQSDACMTSPVSSVHCAASDLTSEESTSKEGTSQDAESTFSSSEDSAHKSKPVNQPLPPSRSSMEMPAHPAPRTVTDEEINFVKTCLQRWRSEIEQDIQDLKNCIASTTQTIEQMYCDPLLRQVPYRLHAVLVHEGQANAGHYWAYIYNQPRQVWLKYNDISVTESSWEELERDSYGGLRNVSAYCLMYINDKLPHCHAESAPNELDQMSGEVEALSVELKHYIQEDNWRFEQEIEEWEEEQSCKIPQMDSSTSSASQEFSPSQESSVASSHGVRCLSSEHAVIVKEQTAQAIANTARAYEKSGVEAALSEAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYDERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLLKGPRRGVKESVIALYRRKCLLELNAKAASLFETNDEHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEIMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCSRFAAVMESIQGVSTVTVK", "length": 1029, "header": "tr|A0A287BT07-1|A0A287BT07_PIG Computationally mapped isoform of Ubiquitin carboxyl-terminal hydrolase 28 OS=Sus scrofa OX=9823 GN=USP28 PE=1 SV=3 CANONICAL=A0A287AP43-1" }, "locus": { "chromosome": "9", "start_pos": 41464567, "end_pos": 41418633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043342.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043342.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059294.3", "url": "https://www.ensembl.org/id/ENSSSCP00000059294.3" } ] } }, { "isoform_ac": "A0A480TDL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43/entry#A0A480TDL9-1", "sequence": { "sequence": "MTAELQQDDAAGAADRHGSSCQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKEPSQDTVATEPSEVEGSAANKEVLAKVIDLTHDNKDDLQAAIALSLLESPKIQTDGRDLNRMPEATSAETKRSKRKRCEVWGENPNPNDWRRVDGWPVGLKNVGNTCWFSAVIQSLFQLPEFRRLVLGYSRPQNALENCPSHAEKRNIVFMQELQYLFALMIGSNRKFVDPSAALDLLKGAFRSPEEQQQDVSEFTHKLLDWLEDAFQLAVNVNSNPRNKSENPMVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGYRNLDECLEGAMVEGDLETLPSDHSVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQIIYMDRYMYRSKELIRSKRECIRKLKEEIKVLQQKLERYVKYGSGPARFPLPDMLKYVIEFASTKPASESTLSQSDACMTSPVSSVHCAASDLTSEESTSKEGTSQDAESTFSSSEDSAHKSKPVNQPLPPSRSSMEMPAHPAPRTVTDEEINFVKTCLQRWRSEIEQDIQDLKNCIASTTQTIEQMYCDPLLRQVPYRLHAVLVHEGQANAGHYWAYIYNQPRQVWLKYNDISVTESSWEELERDSYGGLRNVSAYCLMYINDKLPHCHAESAPNELDQMSGEVEALSVELKHYIQEDNWRFEQEIEEWEEEQSCKIPQMDSSTSSASQEFSPSQESSVASSHGVRCLSSEHAVIVKEQTAQAIANTARAYEKSGVEAALSEAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYDERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLLKGPRRGVKESVIALYRRKCLLELNAKAASLFETNDEHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEIMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCSRFAAVMESIQGVSTVTVK", "length": 1051, "header": "tr|A0A480TDL9-1|A0A480TDL9_PIG Computationally mapped isoform of Ubiquitin carboxyl-terminal hydrolase 28 OS=Sus scrofa OX=9823 GN=USP28 PE=1 SV=1 CANONICAL=A0A287AP43-1" }, "locus": { "chromosome": "9", "start_pos": 41480820, "end_pos": 41418633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045368.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045368.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053656.3", "url": "https://www.ensembl.org/id/ENSSSCP00000053656.3" } ] } }, { "isoform_ac": "A0A8D0TVY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43/entry#A0A8D0TVY0-1", "sequence": { "sequence": "MLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKEPSQDTVATEPSEVEGSAANKEVLAKVIDLTHDNKDDLQAAIALSLLESPKIQTDGRDLNRMPEATSAETKRSKRKRCEVWGENPNPNDWRRVDGWPVGLKNVGNTCWFSAVIQSLFQLPEFRRLVLGYSRPQNALENCPSHAEKRNIVFMQELQYLFALMIGSNRKFVDPSAALDLLKGAFRSPEEQQQDVSEFTHKLLDWLEDAFQLAVNVNNPRNKSENPMVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGYRNLDECLEGAMVEGDLETLPSDHSVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQIIYMDRYMYRSKELIRSKRECIRKLKEEIKVLQQKLERYVKYGSGPARFPLPDMLKYVIEFASTKPASESTLSQSDACMTSPVSSVHCAASDLTSEESTSKEGTSQDAESTFSSSEDSAHKSKPVNQPLPPSRSSMEMPAHPAPRTVTDEEINFVKTCLQRWRSEIEQDIQDLKNCIASTTQTIEQMYCDPLLRQVPYRLHAVLVHEGQANAGHYWAYIYNQPRQVWLKYNDISVTESSWEELERDSYGGLRNVSAYCLMYINDKLPHCHAESAPNELDQMSGEVEALSVELKHYIQEDNWRFEQEIEEWEEEQSCKIPQMDSSTSSASQEFSPSQESSVASSHGVRCLSSEHAVIVKEQTAQAIANTARAYEKSGVEAALSELKEAEPKTPLPPETHPAEQSEQPPQAHDAESAAQPNSEAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYDERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLLKGPRRGVKESVIALYRRKCLLELNAKAASLFETNDEHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEIMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCSRFAAVMESIQGVSTVTVK", "length": 1066, "header": "tr|A0A8D0TVY0-1|A0A287AP43_PIG Computationally mapped isoform of Ubiquitin carboxyl-terminal hydrolase 28 OS=Sus scrofa OX=9823 GN=USP28 PE=1 SV=1 CANONICAL=A0A287AP43-1" }, "locus": { "chromosome": "9", "start_pos": 41464567, "end_pos": 41418633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043912.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043912.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055098.3", "url": "https://www.ensembl.org/id/ENSSSCP00000055098.3" } ] } }, { "isoform_ac": "A0A8D0UNA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43/entry#A0A8D0UNA8-1", "sequence": { "sequence": "MAKHQSCQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKEPSQDTVATEPSEVEGSAANKEVLAKVIDLTHDNKDDLQAAIALSLLESPKIQTDGRDLNRMPEATSAETKRSKRKRCEVWGENPNPNDWRRVDGWPVGLKNVGNTCWFSAVIQSLFQLPEFRRLVLGYSRPQNALENCPSHAEKRNIVFMQELQYLFALMIGSNRKFVDPSAALDLLKGAFRSPEEQQQDVSEFTHKLLDWLEDAFQLAVNVNNPRNKSENPMVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGYRNLDECLEGAMVEGDLETLPSDHSVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQIIYMDRYMYRSKELIRSKRECIRKLKEEIKVLQQKLERYVKYGSGPARFPLPDMLKYVIEFASTKPASESTLSQSDACMTSPVSSVHCAASDLTSEESTSKEGTSQDAESTFSSSEDSAHKSKPVNQPLPPSRSSMEMPAHPAPRTVTDEEINFVKTCLQRWRSEIEQDIQDLKNCIASTTQTIEQMYCDPLLRQVPYRLHAVLVHEGQANAGHYWAYIYNQPRQVWLKYNDISVTESSWEELERDSYGGLRNVSAYCLMYINDKLPHCHAESAPNELDQMSGEVEALSVELKHYIQEDNWRFEQEIEEWEEEQSCKIPQMDSSTSSASQEFSPSQESSVASSHGVRCLSSEHAVIVKEQTAQAIANTARAYEKSGVEAALSELKEAEPKTPLPPETHPAEQSEQPPQAHDAESAAQPNSEVSEVEIPSVGRILVRSDADGYDEEVMLSPAMQGVILAIAKARQTFDRDGSEAGLIKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYDERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLLKGPRRGVKESVIALYRRKCLLELNAKAASLFETNDEHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEIMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCSRFAAVMESIQGVSTVTVK", "length": 1130, "header": "tr|A0A8D0UNA8-1|A0A287AP43_PIG Computationally mapped isoform of Ubiquitin carboxyl-terminal hydrolase 28 OS=Sus scrofa OX=9823 GN=USP28 PE=1 SV=1 CANONICAL=A0A287AP43-1" }, "locus": { "chromosome": "9", "start_pos": 41465583, "end_pos": 41418633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052875.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052875.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049690.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049690.1" } ] } }, { "isoform_ac": "A0A8W4FK38-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43/entry#A0A8W4FK38-1", "sequence": { "sequence": "MTAELQQDDAAGAADRHGSSCQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKEPSQDTVATEPSEVEGSAANKEVLAKVIDLTHDNKDDLQAAIALSLLESPKIQTDGRDLNRMPEATSAETKRSKRKRCEVWGENPNPNDWRRVDGWPVGLKNVGNTCWFSAVIQSLFQLPEFRRLVLGYSRPQNALENCPSHAQDVSEFTHKLLDWLEDAFQLAVNVNNPRNKSENPMVQLFYGTFLTEGVREGKPFCNNETFGQYPLQVNGYRNLDECLEGAMVEGDLETLPSDHSVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQIIYMDRYMYRSKELIRSKRECIRKLKEEIKVLQQKLERYVKYGSGPARFPLPDMLKYVIEFASTKPASESTLSQSDACMTSPVSSVHCAASDLTSEESTSKEGTSQDAESTFSSSEDSAHKSKPVNQPLPPSRSSMEMPAHPAPRTVTDEEINFVKTCLQRWRSEIEQDIQDLKNCIASTTQTIEQMYCDPLLRQVPYRLHAVLVHEGQANAGHYWAYIYNQPRQVWLKYNDISVTESSWEELERDSYGGLRNVSAYCLMYINDKLPHCHAESAPNELDQMSGEVEALSVELKHYIQEDNWRFEQEIEEWEEEQSCKIPQMDSSTSSASQEFSPSQESSVASSHGVRCLSSEHAVIVKEQTAQAIANTARAYEKSGVEAALSELKEAEPKTPLPPETHPAEQSEQPPQAHDAESAAQPNSEVMLSPAMQGVILAIAKARQTFDRDGSEAGLIKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYDERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLLKGPRRGVKESVIALYRRKCLLELNAKAASLFETNDEHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEIMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCSRFAAVMESIQGVSTVTVK", "length": 1074, "header": "tr|A0A8W4FK38-1|A0A287AP43_PIG Computationally mapped isoform of Ubiquitin carboxyl-terminal hydrolase 28 OS=Sus scrofa OX=9823 GN=USP28 PE=1 SV=1 CANONICAL=A0A287AP43-1" }, "locus": { "chromosome": "9", "start_pos": 41480820, "end_pos": 41418633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098390.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098390.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079826.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079826.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0TVY0", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TVY0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5689880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "resource": "Reactome", "description": "Ub-specific processing proteases" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP43", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP43", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP43", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP43", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43" } ], "pmid": "" }, { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP43", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43" } ], "pmid": "" }, { "name": "protein deubiquitination", "id": "GO:0016579", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016579", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP43", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43" } ], "pmid": "" }, { "name": "regulation of protein stability", "id": "GO:0031647", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031647", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP43", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43" } ], "pmid": "" }, { "name": "DNA damage checkpoint signaling", "id": "GO:0000077", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000077", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP43", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cysteine-type deubiquitinase activity", "id": "GO:0004843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004843", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP43", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 374, "end_pos": 376, "annotation": "n_glycosylation_sequon" }, { "start_pos": 644, "end_pos": 646, "annotation": "n_glycosylation_sequon" }, { "start_pos": 922, "end_pos": 924, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-5696914", "name": "USP28 deubiquitinates CLSPN and MYC", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5696914", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696914" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AP43-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1145, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AP43-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AP43" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AP43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AP43" }, { "id": "PS50235", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50235" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "USP", "eco_id": "ECO_0000259", "start_pos": 162, "end_pos": 655, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 283, "end_pos": 285 }, { "start_pos": 311, "end_pos": 313 }, { "start_pos": 374, "end_pos": 376 }, { "start_pos": 644, "end_pos": 646 }, { "start_pos": 922, "end_pos": 924 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287APF1-1", "uniprot_ac": "A0A287APF1", "uniprot_id": "A0A287APF1_PIG", "mass": { "chemical_mass": 22508.0, "monoisotopic_mass": 22508.0 }, "refseq": { "ac": "XP_003129431", "name": "A-kinase interacting protein 1 isoform 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129431" }, "gene_names": [ { "name": "AKIP1", "type": "recommended", "evidence": [ { "id": "A0A287APF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APF1" } ] }, { "name": "AKIP1", "type": "synonym", "evidence": [ { "id": "XP_003129431", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129431" } ] } ], "protein_names": [ { "name": "A-kinase interacting protein 1 isoform 1", "type": "synonym", "evidence": [ { "id": "XP_003129431", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129431" } ] }, { "name": "A-kinase interacting protein 1", "type": "synonym", "evidence": [ { "id": "A0A287APF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APF1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287APF1", "url": "https://www.uniprot.org/uniprotkb/A0A287APF1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AKIP1", "url": "https://www.uniprot.org/uniprotkb/A0A287APF1", "locus": { "chromosome": "9", "start_pos": 531544, "end_pos": 537679, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033335", "url": "https://www.ensembl.org/id/ENSSSCG00000033335" } ] } } ], "crossref": [ { "id": "A0A287APF1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287APF1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033335", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033335", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517841", "url": "https://www.ncbi.nlm.nih.gov/gene/100517841", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR033214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517841", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517841", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RIMAEFM", "url": "https://omabrowser.org/oma/group/RIMAEFM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287APF1", "url": "https://www.orthodb.org/?gene=A0A287APF1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14330", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14330", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14330:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14330:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27911", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27911", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129431", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129431", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A1V4", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A1V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1V4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APF1", "url": "https://www.uniprot.org/uniprotkb/A0A287APF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APF1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLH4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR14", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR14-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR14-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESCLVAAALNGVDRRSLQRSARLAREVLERARRRAVDWRSVELPKGSVGVISRELPCRERGLAAGPQRLLPGEREERLPTLSASFRTMAEFMDYTSSQCGKYCSSLPEEGGSAHAYRYHRGKSELRLGPDPGSGQRNPASLGVRGSCQASECVLGVSRPAEPVSKDLYIEVYPGTYSVTVGADDLTRKTHVVAVDSGQSVDLVFPV", "length": 207, "header": "tr|A0A287APF1-1|A0A287APF1_PIG Isoform 1 of A-kinase interacting protein 1 OS=Sus scrofa OX=9823 GN=AKIP1 PE=4 SV=1 CANONICAL=A0A287APF1-1" }, "isoforms": [ { "isoform_ac": "A0A287A1V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APF1/entry#A0A287A1V4-1", "sequence": { "sequence": "MESCLVAAALNGVDRRSLQRSARLAREVLERARRRAVDWRSVELPKGSVGVISRELPCRERGLAAGPQRLLPGEKYCSSLPEEGGSAHAYRYHRGKSELRLGPDPGSGQRNPASLGVRGSCQASECVLGVSRPAEPVSKDLYIEVYPGTYSVTVGADDLTRKTHVVAVDSGQSVDLVFPV", "length": 180, "header": "tr|A0A287A1V4-1|A0A287APF1_PIG Computationally mapped isoform of A-kinase interacting protein 1 OS=Sus scrofa OX=9823 GN=AKIP1 PE=4 SV=2 CANONICAL=A0A287APF1-1" }, "locus": { "chromosome": "9", "start_pos": 537459, "end_pos": 531803, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038117.2", "url": "https://www.ensembl.org/id/ENSSSCT00000038117.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037703.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037703.2" } ] } }, { "isoform_ac": "A0A287APF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APF1/entry#A0A287APF1-1", "sequence": { "sequence": "MESCLVAAALNGVDRRSLQRSARLAREVLERARRRAVDWRSVELPKGSVGVISRELPCRERGLAAGPQRLLPGEREERLPTLSASFRTMAEFMDYTSSQCGKYCSSLPEEGGSAHAYRYHRGKSELRLGPDPGSGQRNPASLGVRGSCQASECVLGVSRPAEPVSKDLYIEVYPGTYSVTVGADDLTRKTHVVAVDSGQSVDLVFPV", "length": 207, "header": "tr|A0A287APF1-1|A0A287APF1_PIG Isoform 1 of A-kinase interacting protein 1 OS=Sus scrofa OX=9823 GN=AKIP1 PE=4 SV=1 CANONICAL=A0A287APF1-1" }, "locus": { "chromosome": "9", "start_pos": 537459, "end_pos": 531803, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056088.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056088.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045822.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045822.1" } ] } }, { "isoform_ac": "A0A5G2QLH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APF1/entry#A0A5G2QLH4-1", "sequence": { "sequence": "MESCLVAAALNGVDRRSLQRSARLAREVLERARRRAVDWRSVELPKGSVGVISRELPCRERGLAAGPQRLLPGEREERLPTLSASFRTMAEFMDYTSSQCGKYCSSLPEEGGSAHAYRYHRGKSELRLGPDPGSGQRNPASLGVRGSCQASECVLGVSRPVSTQQPGWAPPLQCQEPDNLVAVGRPVLGLW", "length": 191, "header": "tr|A0A5G2QLH4-1|A0A287APF1_PIG Computationally mapped isoform of A-kinase interacting protein 1 OS=Sus scrofa OX=9823 GN=AKIP1 PE=4 SV=1 CANONICAL=A0A287APF1-1" }, "locus": { "chromosome": "9", "start_pos": 537459, "end_pos": 533172, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088818.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088818.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065421.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065421.1" } ] } }, { "isoform_ac": "A0A5G2QR14-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APF1/entry#A0A5G2QR14-1", "sequence": { "sequence": "MESCLVAAALNGVDRRSLQRSARLAREVLERARRRAVDWRSVELPKGSVGVISRELPCRERGLAAGPQRLLPGEREERLPTLSASFRTMAEFMDYTSSQCGKYCSSLPEEGGSAHAYRYHRGKSELRLGPDPGSGQAEPVSKDLYIEVYPGTYSVTVGADDLTRKTHVVAVDSGQSVDLVFPV", "length": 183, "header": "tr|A0A5G2QR14-1|A0A287APF1_PIG Computationally mapped isoform of A-kinase interacting protein 1 OS=Sus scrofa OX=9823 GN=AKIP1 PE=4 SV=1 CANONICAL=A0A287APF1-1" }, "locus": { "chromosome": "9", "start_pos": 537459, "end_pos": 531803, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074045.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074045.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066492.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066492.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 180, "start_aa": "Thr", "end_pos": 180, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr180", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLH4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLH4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517841", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517841", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9T6A9-1", "protein_name": "A-kinase interacting protein 1", "gene_name": "AKIP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MENCLVAAALNGVDRRSLQRSARLGQEVLERAKRRAVDWPSVELPKGSVGIVSRVRHYGERGPAASPQRLLPGKREDRHPTLSASFRTMAEYMNYTSSQCGKYYSSAPEEGGATHVYRYHRGTSELHLCSDAGSGQRKDAGLSVGGMHRASECVLKAPQSAENISKDLYIEVYPGTYSVTVGADDLTKKTHIVAVDSGQSVDLVFPI", "length": 207 }, "evidence": [ { "id": "A0A287APF1", "url": "https://omabrowser.org/oma/group/A0A287APF1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZV70-1", "protein_name": "A-kinase interacting protein 1", "gene_name": "Akip1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEYCLAAAALNAVDRRSLQRSARLGREVLERAKRRAVDWHSPERSRGCVGVLYGQDPYQERWSVPGPQSLLGEREERRPTLSTSFRTMAEFMDYTSSQCGKYYLSTPEEGGATHVYRYHRRKPAEVHVCSDSGHREAQVRARCSPQHLPCLKRNCRGETSVGPGSIYQTSEHSQESSWPIENISKDLYIEVYPGTYSVTVGSGALSKKTHVVAVDSGQSVDLVFPV", "length": 226 }, "evidence": [ { "id": "A0A287APF1", "url": "https://omabrowser.org/oma/group/A0A287APF1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9JJR5-1", "protein_name": "A-kinase-interacting protein 1", "gene_name": "Akip1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEYCLAAAALNGVDRRSLQRSARLGREVLERAKRRAVDWHSPERSRGNVGVLYRQGPYQERWSVPGSQRLLGEREERCPTLSSSFGAMAEFMDYTSSQCGKYYLSMPEEGGATHVYRYHRRKPPEMHMYSDTGHSQEQRNCRGETSVGQESIYQTSEHSQESSWPTENISKDLYIEVYPGTYSVTVGSSALSKKTHVVAVDPGQSVDLVFPV", "length": 212 }, "evidence": [ { "id": "A0A287APF1", "url": "https://omabrowser.org/oma/group/A0A287APF1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NQ31-1", "protein_name": "A-kinase-interacting protein 1", "gene_name": "AKIP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQSVDLVFPV", "length": 210 }, "evidence": [ { "id": "A0A287APF1", "url": "https://omabrowser.org/oma/group/A0A287APF1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of non-canonical NF-kappaB signal transduction", "id": "GO:1901222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901222", "evidence": [ { "database": "UniProtKB", "id": "A0A287APF1", "url": "https://www.uniprot.org/uniprotkb/A0A287APF1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287APF1", "url": "https://www.uniprot.org/uniprotkb/A0A287APF1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287APF1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 207, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287APF1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287APF1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 180 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AIB9-1", "uniprot_ac": "A0A287AIB9", "uniprot_id": "A0A287AIB9_PIG", "mass": { "chemical_mass": 55119.0, "monoisotopic_mass": 55119.0 }, "refseq": {}, "gene_names": [ { "name": "IFI44L", "type": "recommended", "evidence": [ { "id": "A0A287AIB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9" } ] } ], "protein_names": [ { "name": "Interferon-induced protein 44-like", "type": "recommended", "evidence": [ { "id": "A0A287AIB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AIB9", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IFI44L", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9", "locus": { "chromosome": "6", "start_pos": 134659639, "end_pos": 134679331, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027660", "url": "https://www.ensembl.org/id/ENSSSCG00000027660" } ] } } ], "crossref": [ { "id": "A0A287AIB9", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AIB9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027660", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027660", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00882", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00882", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511267", "url": "https://www.ncbi.nlm.nih.gov/gene/100511267", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006571", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006571", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TRLTWNE", "url": "https://omabrowser.org/oma/group/TRLTWNE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8W4FDL7", "url": "https://www.orthodb.org/?gene=A0A8W4FDL7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14241", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14241", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14241:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14241:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07534", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07534", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9909505", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9909505", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A472", "url": "https://www.uniprot.org/uniprotkb/A0A287A472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A472-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A472-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9D3", "url": "https://www.uniprot.org/uniprotkb/A0A287A9D3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9D3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIB9", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B4L2", "url": "https://www.uniprot.org/uniprotkb/A0A287B4L2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B4L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B4L2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDL7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDL7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LMG2", "url": "https://www.uniprot.org/uniprotkb/I3LMG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LMG2-1", "url": "https://www.uniprot.org/uniprotkb/I3LMG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVTPRLTWNEEKSLQKLLGNVSLRLLYKSSVHGNSFGTMLNKCSCQGSTILMVYLPNNVFGIFVLESYPEMSEHLKKPTTSFLLSFQKNKIMEMTAAFFNSTVDLIDNKLRFNFSQVQYVLLRSNTQNIFIPRLLGEKLGLTYDFKSQYTEYEVFRVEGMKDEPGYINRIAGATPHRDSLLAELRAYRPYADLVSEIRILLLGPVGSGKSSFFNSVKSIFRGHLTRQAIVGSDISTITEKYRIYSIKDEKDGKSLPFMLCDSMGLNEKDGVGLCVDDIPHILKGCMPDRYQFNQKPITPKHPTFITSPSLNHRIHCVAYVFDINSIDNLSFQMLAKVKQVQKEVLKCGVSQVALLTKVNNCNGVLQDNFLQMSESMIYKSQVRDVNMMLGIPKSNILVVENYASEREMDPLQDILILSALKQMTRAADDFLEDLPLETDAIAGMFQLCMRCQLPGSRHLAQTGIADSLFETLLPFMFCLLSLRASN", "length": 487, "header": "tr|A0A287AIB9-1|A0A287AIB9_PIG Isoform 1 of Interferon-induced protein 44-like OS=Sus scrofa OX=9823 GN=IFI44L PE=1 SV=2 CANONICAL=A0A287AIB9-1" }, "isoforms": [ { "isoform_ac": "A0A287A472-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9/entry#A0A287A472-1", "sequence": { "sequence": "MEVTPRLTWNEEKSLQKLLGNVSLRLLYKSSVHGNSFGTMLNKCSCQGSTILMVYLPNNVFGIFVLESYPEMSEHLKKPTTSFLLSFQKNKIMEMTAAFFNSTVDLIDNKLRFNFSQVQYVLLRSNTQNIFIPRLLGEKLGLTYDFKSQYTEYEVFRVEDNLKVIKFYSLLAELRAYRPYADLVSEIRILLLGPVGSGKSSFFNSVKSIFRGHLTRQAIVGSDISTITEKYRIYSIKDEKDGKSLPFMLCDSMGLNEKDGVGLCVDDIPHILKGCMPDRYQHPTFITSPSLNHRIHCVAYVFDINSIDNLSFQMLAKVKQVQKEVLKCGVSQVALLTKVNNCNGVLQDNFLQMSESMIYKSQVRDVNMMLGIPKSNILVVENYASEREMDPLQDILILSALKQMTRAADDFLEDLPLE", "length": 418, "header": "tr|A0A287A472-1|A0A287AIB9_PIG Computationally mapped isoform of Interferon-induced protein 44-like OS=Sus scrofa OX=9823 GN=IFI44L PE=1 SV=1 CANONICAL=A0A287AIB9-1" }, "locus": { "chromosome": "6", "start_pos": 134672382, "end_pos": 134660793, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043655.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043655.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038745.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038745.2" } ] } }, { "isoform_ac": "A0A287A9D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9/entry#A0A287A9D3-1", "sequence": { "sequence": "MEVTPRLTWNEEKSLQKLLGNVSLRLLYKSSVHGNSFGTMLNKCSCQGSTILMVYLPNNVFGIFVLESYPEMSEHLKKPTTSFLLSFQKNKIMEMTAAFFNSTVDLIDNKLRFNFSQVQYVLLRSNTQNIFIPRLLGEKLGLTYDFKSQYTEYEIILHSVSTELRAYRPYADLVSEIRILLLGPVGSGKSSFFNSVKSIFRGHLTRQAIVGSDISTITEKYRIYSIKDEKDGKSLPFMLCDSMGLNEKDGVGLCVDDIPHILKGCMPDRYQHPTFITSPSLNHRIHCVAYVFDINSIDNLSFQMLAKVKQVQKEVLKCGKSHCTYQKSFMLKSKYIHRKLQKRVRDVNMMLGIPKSNILVVENYASEREMDPLQDILILSALKQMTRAADDFLEDLPLE", "length": 399, "header": "tr|A0A287A9D3-1|A0A287AIB9_PIG Computationally mapped isoform of Interferon-induced protein 44-like OS=Sus scrofa OX=9823 GN=IFI44L PE=1 SV=2 CANONICAL=A0A287AIB9-1" }, "locus": { "chromosome": "6", "start_pos": 134672382, "end_pos": 134660793, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052617.2", "url": "https://www.ensembl.org/id/ENSSSCT00000052617.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040555.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040555.2" } ] } }, { "isoform_ac": "A0A287AIB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9/entry#A0A287AIB9-1", "sequence": { "sequence": "MEVTPRLTWNEEKSLQKLLGNVSLRLLYKSSVHGNSFGTMLNKCSCQGSTILMVYLPNNVFGIFVLESYPEMSEHLKKPTTSFLLSFQKNKIMEMTAAFFNSTVDLIDNKLRFNFSQVQYVLLRSNTQNIFIPRLLGEKLGLTYDFKSQYTEYEVFRVEGMKDEPGYINRIAGATPHRDSLLAELRAYRPYADLVSEIRILLLGPVGSGKSSFFNSVKSIFRGHLTRQAIVGSDISTITEKYRIYSIKDEKDGKSLPFMLCDSMGLNEKDGVGLCVDDIPHILKGCMPDRYQFNQKPITPKHPTFITSPSLNHRIHCVAYVFDINSIDNLSFQMLAKVKQVQKEVLKCGVSQVALLTKVNNCNGVLQDNFLQMSESMIYKSQVRDVNMMLGIPKSNILVVENYASEREMDPLQDILILSALKQMTRAADDFLEDLPLETDAIAGMFQLCMRCQLPGSRHLAQTGIADSLFETLLPFMFCLLSLRASN", "length": 487, "header": "tr|A0A287AIB9-1|A0A287AIB9_PIG Isoform 1 of Interferon-induced protein 44-like OS=Sus scrofa OX=9823 GN=IFI44L PE=1 SV=2 CANONICAL=A0A287AIB9-1" }, "locus": { "chromosome": "6", "start_pos": 134672382, "end_pos": 134660497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065726.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065726.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043630.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043630.2" } ] } }, { "isoform_ac": "A0A287B4L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9/entry#A0A287B4L2-1", "sequence": { "sequence": "MFVTLSFTFLSLKQAALISAEPSPNRGCSINQSREYSIYAPSNSENRYGTMEVTPRLTWNEEKSLQKLLGNVSLRLLYKSSVHGNSFGTMLNKCSCQGSTILMVYLPNNVFGIFVLESYPEMSEHLKKPTTSFLLSFQKNKIMEMTAAFFNSTVDLIDNKLRFNFSQVQYVLLRSNTQNIFIPRLLGEKLGLTYDFKSQYTEYEVFRVEGMKDEPGYINRIAGATPHRDSLLAELRAYRPYADLVSEIRILLLGPVGSGKSSFFNSVKSIFRGHLTRQAIVGSDISTITEKYRIYSIKDEKDGKSLPFMLCDSMGLNEKDGVGLCVDDIPHILKGCMPDRYQVLGTVKSVSISKW", "length": 355, "header": "tr|A0A287B4L2-1|A0A287B4L2_PIG Computationally mapped isoform of Interferon induced protein 44 like OS=Sus scrofa OX=9823 GN=IFI44L PE=1 SV=2 CANONICAL=A0A287AIB9-1" }, "locus": { "chromosome": "6", "start_pos": 134679198, "end_pos": 134666709, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058575.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058575.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048700.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048700.2" } ] } }, { "isoform_ac": "A0A8W4FDL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9/entry#A0A8W4FDL7-1", "sequence": { "sequence": "MFVTLSFTFLSLKQAALISAEPSPNRGCSINQSREYSIYAPSNSENRYGTMEVTPRLTWNEEKSLQKLLGNVSLRLLYKSSVHGNSFGTMLNKCSCQGSTILMVYLPNNVFGIFVLESYPEMSEHLKKPTTSFLLSFQKNKIMEMTAAFFNSTVDLIDNKLRFNFSQVQYVLLRSNTQNIFIPRLLGEKLGLTYDFKSQYTEYEVFRVEGMKDEPGYINRIAGATPHRDSLLAELRAYRPYADLVSEIRILLLGPVGSGKSSFFNSVKSIFRGHLTRQAIVGSDISTITEKYRIYSIKDEKDGKSLPFMLCDSMGLNEKDGVGLCVDDIPHILKGCMPDRYQVRILQCLKHFKSFSSVLLVDLSLHKAVSTVIKVVSTPTNNTVFKLVNIHVRKVDNGSSFQ", "length": 402, "header": "tr|A0A8W4FDL7-1|A0A287AIB9_PIG Computationally mapped isoform of Interferon-induced protein 44-like OS=Sus scrofa OX=9823 GN=IFI44L PE=1 SV=1 CANONICAL=A0A287AIB9-1" }, "locus": { "chromosome": "6", "start_pos": 134679198, "end_pos": 134667165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102395.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102395.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077408.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077408.1" } ] } }, { "isoform_ac": "I3LMG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9/entry#I3LMG2-1", "sequence": { "sequence": "MFVTLSFTFLSLKQAALISAEPSPNRGCSINQSREYSIYAPSNSENRYGTMEVTPRLTWNEEKSLQKLLGNVSLRLLYKSSVHGNSFGTMLNKCSCQGSTILMVYLPNNVFGIFVLESYPEMSEHLKKPTTSFLLSFQKNKIMEMTAAFFNSTVDLIDNKLRFNFSQVQYVLLRSNTQNIFIPRLLGEKLGLTYDFKSQYTEYEVFRVEGMKDEPGYINRIAGATPHRDSLLAELRAYRPYADLVSEIRILLLGPVGSGKSSFFNSVKSIFRGHLTRQAIVGSDISTITEKYRIYSIKDEKDGKSLPFMLCDSMGLNEKDGVGLCVDDIPHILKGCMPDRYQVRILQCTFISHRRESIASVQHLNT", "length": 366, "header": "tr|I3LMG2-1|A0A287AIB9_PIG Computationally mapped isoform of Interferon-induced protein 44-like OS=Sus scrofa OX=9823 GN=IFI44L PE=1 SV=3 CANONICAL=A0A287AIB9-1" }, "locus": { "chromosome": "6", "start_pos": 134679198, "end_pos": 134666426, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029270.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029270.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025283.3", "url": "https://www.ensembl.org/id/ENSSSCP00000025283.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LMG2", "url": "https://www.uniprot.org/uniprotkb/I3LMG2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9909505", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9909505", "resource": "Reactome", "description": "Modulation of host responses by IFN-stimulated genes" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BF69-1", "protein_name": "Interferon-induced protein 44-like", "gene_name": "IFI44L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAVTTTLTWNEERSFQKLLGNVSLRLLYKSSVHGRSTVEMQNRCRCQGPIVTVIYHSNSIFGVFTLGHSSDMSESFTEPNASFFFSLQKNETMEMKTVVLNSTVTFYRNNLTFCFSSYYNQKLSLNFEESRIYIPRIFEEELIVKSHAKSTFLECEVFRVEGIKDEAGYINRITRAIQHRNSLLADVRAYSPYADLVSEIRILLLGPVGSGKSSFFNSVKSIFQGHLTRQAIVGSDVTSITEQYRIYSIKDGKNGQSLPFMLCDSMGLDEKEGVGLCVDDIPHILKGCVPDRYEFSPQKPITPKHPTFITSPSLKDRIHCVAYVFDINSMDNLSSKMVAKLKQIQKEVINCGVAQVALLTKVNNCNEVLQDNFLKMNKAMISQSQIQNVNKILGIPLSRILVVDNYASEREMDPVKDILILSALKQMFRATDDFLEDLPLE", "length": 441 }, "evidence": [ { "id": "A0A287AIB9", "url": "https://omabrowser.org/oma/group/A0A287AIB9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "M0R4J5-1", "protein_name": "Interferon-induced protein 44-like", "gene_name": "Ifi44l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNMLGLRGSYRNTKVTTRLTWIEEKILEKLLGNASLTLLYQSNVHKRCTLEMTKKCSLQGSTMTIVYLEQEVVGVFMLEDFPDKDSKKTSTCAWFSFERNKISSGISALVLNTLVKVNSTSLQMSSISGLTLIVYPSKEGLYLNEAVIKNLELNVKQSQYLECEIFRVDGIKNNPGFIKKMVTARQHRGKFLSTLRAYRPYADLVSEVRILLVGPVGSGKSSFVNSVKSSFQGRLTRQAIVGSDKSSITTQYKVYSIKDEKNKETLPFMLCDSMGLEDEKEAGLCTDDIPHILKGCVPDRYQFNPREPIKLKHFTYAASPPLKDRIHCVAFVLDINSVDTLSDKMVAKLKKIRKDVVDCGVGCVALLTNVSDYDEVLDNNLVNMTENMTSLNQVQNVRNMLNIPVANILMVSNYASERMLEPLKDVLIFAALQQMLRAADDALEDLPLEDTASDDGSFNNSSHIKNEGKLGEVKRREMS", "length": 479 }, "evidence": [ { "id": "A0A287AIB9", "url": "https://omabrowser.org/oma/group/A0A287AIB9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q53G44-1", "protein_name": "Interferon-induced protein 44-like", "gene_name": "IFI44L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEVTTRLTWNDENHLRKLLGNVSLSLLYKSSVHGGSIEDMVERCSRQGCTITMAYIDYNMIVAFMLGNYINLHESSTEPNDSLWFSLQKKNDTTEIETLLLNTAPKIIDEQLVCRLSKTDIFIICRDNKIYLDKMITRNLKLRFYGHRQYLECEVFRVEGIKDNLDDIKRIIKAREHRNRLLADIRDYRPYADLVSEIRILLVGPVGSGKSSFFNSVKSIFHGHVTGQAVVGSDITSITERYRIYSVKDGKNGKSLPFMLCDTMGLDGAEGAGLCMDDIPHILKGCMPDRYQFNSRKPITPEHSTFITSPSLKDRIHCVAYVLDINSIDNLYSKMLAKVKQVHKEVLNCGIAYVALLTKVDDCSEVLQDNFLNMSRSMTSQSRVMNVHKMLGIPISNILMVGNYASDLELDPMKDILILSALRQMLRAADDFLEDLPLEETGAIERALQPCI", "length": 452 }, "evidence": [ { "id": "A0A287AIB9", "url": "https://omabrowser.org/oma/group/A0A287AIB9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIB9", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIB9", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9" } ], "pmid": "" }, { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIB9", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 21, "end_pos": 23, "annotation": "n_glycosylation_sequon" }, { "start_pos": 329, "end_pos": 331, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AIB9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 487, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AIB9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AIB9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AIB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AIB9" }, { "id": "PS51886", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51886" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TLDc", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 159, "start_aa": "Met", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 }, { "start_pos": 114, "end_pos": 116 }, { "start_pos": 21, "end_pos": 23 }, { "start_pos": 329, "end_pos": 331 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AH24-1", "uniprot_ac": "A0A287AH24", "uniprot_id": "A0A287AH24_PIG", "mass": { "chemical_mass": 97051.0, "monoisotopic_mass": 97051.0 }, "refseq": { "ac": "XP_020927281", "name": "programmed cell death 6-interacting protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927281" }, "gene_names": [ { "name": "PDCD6IP", "type": "recommended", "evidence": [ { "id": "A0A287AH24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" } ] }, { "name": "PDCD6IP", "type": "synonym", "evidence": [ { "id": "XP_020927281", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927281" } ] } ], "protein_names": [ { "name": "Programmed cell death 6-interacting protein", "type": "recommended", "evidence": [ { "id": "A0A287AH24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24/entry#names_and_taxonomy" } ] }, { "name": "ALG-2-interacting protein 1", "type": "synonym", "evidence": [ { "id": "A0A287AH24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24/entry#names_and_taxonomy" } ] }, { "name": "programmed cell death 6-interacting protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020927281", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927281" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AH24", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PDCD6IP", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24", "locus": {} } ], "crossref": [ { "id": "A0A287AH24", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AH24", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011237", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011237", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09235", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09235", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09240", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09240", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512811", "url": "https://www.ncbi.nlm.nih.gov/gene/100512811", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004328", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004328", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VSHAEEM", "url": "https://omabrowser.org/oma/group/VSHAEEM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23030", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23030", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23030:SF39", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23030:SF39", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03097", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03097", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13949", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13949", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5213460", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5213460", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5675482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5675482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020927281", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927281", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A5B4", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5B4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AH24", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AH24-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRD6", "url": "https://www.uniprot.org/uniprotkb/F1RRD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRD6-1", "url": "https://www.uniprot.org/uniprotkb/F1RRD6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATFISVQQKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAALGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKISRALTAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDISGDTVPQSILNKSTSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYRPLRAEGTNFRTVLDKAVHADGQVKDRYQAHRDTIALLCKPEPELNAAIPSANPAKTMQGSEVVSVLKSLLTNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEAISVTELDRIYGGLTTKVQESLKKQEELLKNIQVSHQEFSKMKQSNSEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEMLVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPTPAYQSSPAGGHTPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPPATAPAPAQAPAPAPAPAGTGTTAPAPSQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQQPSYPFPQPPQQSYYPQQ", "length": 878, "header": "tr|A0A287AH24-1|A0A287AH24_PIG Isoform 1 of Programmed cell death 6-interacting protein OS=Sus scrofa OX=9823 GN=PDCD6IP PE=1 SV=1 CANONICAL=A0A287AH24-1" }, "isoforms": [ { "isoform_ac": "A0A287A5B4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24/entry#A0A287A5B4-1", "sequence": { "sequence": "MATFISVQQKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAALGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKISRALTAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDISGDTVPQSILNKSTSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYRPLRAEGTNFRTVLDKAVHADGQVKDRYQAHRDTIALLCKPEPELNAAIPSANPAKTMQGSEVVSVLKSLLTNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEAISVTELDRIYGGLTTKVQESLKKQEELLKNIQVSHQEFSKMKQSNSEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEMLVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPTPAYQSSPAGGHTPTPPTPAPRTMPVNALAFFS", "length": 756, "header": "tr|A0A287A5B4-1|A0A287AH24_PIG Computationally mapped isoform of Programmed cell death 6-interacting protein OS=Sus scrofa OX=9823 GN=PDCD6IP PE=1 SV=2 CANONICAL=A0A287AH24-1" }, "locus": { "chromosome": "13", "start_pos": 19665993, "end_pos": 19597260, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049951.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049951.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039055.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039055.2" } ] } }, { "isoform_ac": "A0A287AH24-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24/entry#A0A287AH24-1", "sequence": { "sequence": "MATFISVQQKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAALGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKISRALTAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDISGDTVPQSILNKSTSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYRPLRAEGTNFRTVLDKAVHADGQVKDRYQAHRDTIALLCKPEPELNAAIPSANPAKTMQGSEVVSVLKSLLTNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEAISVTELDRIYGGLTTKVQESLKKQEELLKNIQVSHQEFSKMKQSNSEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEMLVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPTPAYQSSPAGGHTPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPPATAPAPAQAPAPAPAPAGTGTTAPAPSQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQQPSYPFPQPPQQSYYPQQ", "length": 878, "header": "tr|A0A287AH24-1|A0A287AH24_PIG Isoform 1 of Programmed cell death 6-interacting protein OS=Sus scrofa OX=9823 GN=PDCD6IP PE=1 SV=1 CANONICAL=A0A287AH24-1" }, "locus": { "chromosome": "13", "start_pos": 19660680, "end_pos": 19597260, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057076.2", "url": "https://www.ensembl.org/id/ENSSSCT00000057076.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043173.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043173.2" } ] } }, { "isoform_ac": "F1RRD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24/entry#F1RRD6-1", "sequence": { "sequence": "MATFISVQQKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAALGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKISRALTAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDISGDTVPQSILNKSTSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYRPLRAEGTNFRTVLDKAVHADGQVKDRYQAHRDTIALLCKPEPELNAAIPSANPAKTMQGSEVVSVLKSLLTNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEAISVTELDRIYGGLTTKVQESLKKQEELLKNIQVSHQEFSKMKQSNSEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEMLVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPTPAYQSSPAGGHTPTPPTPAPRTMPVLPNAHAHGL", "length": 758, "header": "tr|F1RRD6-1|A0A287AH24_PIG Computationally mapped isoform of Programmed cell death 6-interacting protein OS=Sus scrofa OX=9823 GN=PDCD6IP PE=1 SV=5 CANONICAL=A0A287AH24-1" }, "locus": { "chromosome": "13", "start_pos": 19660538, "end_pos": 19597260, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012304.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012304.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011985.5", "url": "https://www.ensembl.org/id/ENSSSCP00000011985.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 724, "start_aa": "Thr", "end_pos": 724, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr724", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 741, "start_aa": "Thr", "end_pos": 741, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr741", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RRD6", "url": "https://www.uniprot.org/uniprotkb/F1RRD6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5213460", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5213460", "resource": "Reactome", "description": "RIPK1-mediated regulated necrosis" }, { "id": "R-SSC-5675482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5675482", "resource": "Reactome", "description": "Regulation of necroptotic cell death" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M2B6D5-1", "protein_name": "Programmed cell death 6-interacting protein", "gene_name": "pdcd6ip", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MATFISVPLKKSSEVDLVKPLSKFVTATYPPGEEQAEYLRAVDELNKLRKSALGRPLDKHESSLEILLRYYDQLCAIEPKFPFPELCLTFTWKDAFDKGSLFGGSVKLALASLGYEKTCVLFNVGALASQIASEQNLDNDEGLKTAAKFYQLASGAFAHIKDTVLSALNREPTMDISPETVGTLSQIMLSQAQEVFVLKATSDKMKDAIVAKLANQAADYYGDAFKQCQYKENLPKYFYFQDVLPVLAAKHCMMQATAEMHQSALANQKKKFGEEIARLQHAQELVKTAASRYDEYVNVKDLSDKINRALTAAKKDNDFIYHDRVPEVKDLEHIGKASLVKATAVQTPLSQKFTDLFEKMVPMAVQQSVSAANSRKAETVNRLIGSMREATNLCNGVLASLNLPAALEDLSGDAVPQSILEKSRALIQQGGLQSIEQLIKDLPELLQRNREILDESLKMLDDEEATDNELRGKFNQRWNRTPSGDLYKPLRAEGNNFRNILDKAVQADQVVRERYTAHCEMIALLCKPENELSAAIPSANPAKTLQGSEVVNVLRSQLAQLDEVKREREVLEGEVKSVTFDLTAKFLTALAQDGAINEEVMTSSELDARYGSHNQRVQQNLRRQEELLSQIQVSHQEFSALKQSNSEANTREDVLKKLASAHDSYIEISSNIKEGTKFYNDLTEILLKFQNKCSDIVFARKTERDELLKELQQSIAREPSAPSFSVPSYQSNTPAPAGGPTPAPRTVFSQQQPQAKPQPPARPPPPSIAPQAASAAVPVSAPMAPGSSNPPPVAPTGPSQAQGPPYPSYQGYPGYYQMPMAYNPYAYGQYNMPYMPYQAQGQAGYPGAPATQQPYPYPQQPPQQQPYYPQQ", "length": 871 }, "evidence": [ { "id": "A0A287AH24", "url": "https://omabrowser.org/oma/group/A0A287AH24/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F4HXZ1-1", "protein_name": "Vacuolar-sorting protein BRO1", "gene_name": "BRO1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASSSLSNLMLAIHEKKTSSVDLYRPLRNYVTFTYSEREAQLIDDDLETLKQLRSDIERVSDPSPAARRDLLISYYKVLCLVETRFPISPDKDHVNAVSFVWYDAFKQKHKATQQNIHLEKAAVLFNLGASYSQIGLGHDRTTVDGRRQASHAFMAAAGAFAHLRDNESIKATIGPSTTVDVSVECVGMLERLMVAQAQECVFENTIAKGSTPGVSAKIARQVGIFYEEALSALIISPLKDHFDKGWISHVQLKAALFYGEACFRYGKELHEKEEIAEEIARLRSGASRLAEAKKSSRGAPAQLIEAMNTLESSINGNLDRAVKENDRVYLMRVPSPSSLSPLPAFSMVKPMNMTDILDASKEKMFSILVPDSSAKALSRYTEMVDDVIRTQAERLQQASELTRVRLKEMDLPDSILAVDGNSALPVDLKEDVEAVQISGGPAGLEAELQQLRDLKRVNQELLVHTEELLQKEATEDSQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAANLKQAGESDVKIERSVRDNSALMSILDRRPIESAVPTLARPIMSLDATEDAIVGTLKQSLRQLENLGAQRAGLEDMLKEMKRKDDILPKLMTITGSYEDMFRKEISKYDHICEDISQNIEVQEQLLMQIQAQNEEFSTIFNLEDYKASKEKCYKQIQAAIMKYREIKENINEGLKFYVTLQDAITNVKQQCSDFVMTRSIQCRDMIEDVQRQMSGLSFQDHRSSGPYPSVHQPTASSPPPPPETQNPSHPHPHAPYYRPPEQMSRPGYSIPPYGPPPPYHTPHGQAPQPYPPQAQQQPHPSWQQGSYYDPQGQQPRPPYPGQSPYQPPHQGGGYYRQ", "length": 846 }, "evidence": [ { "id": "A0A287AH24", "url": "https://omabrowser.org/oma/group/A0A287AH24/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q12033-1", "protein_name": "pH-response regulator protein palA/RIM20", "gene_name": "RIM20", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSELLAIPLKRTLEVDFATELSKLIDTTSFQTASFFQSDILKVVDARNNAIAPDISIDGLSALKEYYVILLQLEKKFPNNQIEFTWFQTLSQKSRGTSQYSLQWEKLTIIYNIGCMYSLLALNSNNDAAESLKTSCLYFQNAAGCFKHVLDHQKNLETIPVVDDATLNALTSLMLAQAQECFWFKAVQDKHKDSLIAKLSQQIVDFYCEAINDAQRGKLIRSDWINHLKAKKAYFSAVTYYRIALSFNEKKQFGNVVKALQMGLQFINESTLSSQAKFKTVVESSLKEAQRDNEFIYLQEVPSELPSIKPALMVKPSSSATLLPSIKKDETLFKDLIPIEVMEYCTAYNERQDEYVEQRVTNPLASLNKLLKESLTTFQIPQGLTKVSEAELSHYQASLNNLLINNKNVQVQLDNIEQILNEEAFTDNQLRLKHGTLNWTLPESSTTNTAYYEKLKKLRGYLDEGSAIDKQTNELFQSIDKNLIGSEIRLPESNDPLTNKIKMIIQERNDYIDRTRRKSSEYRILPKIITSYKKNGTVDFEPIFIGHLKYFDEDLRYVNSTKEENIKLIEEVNLSKKNNPGRSGIEPKKMVRIDPRELYIEDLRYSFKLLDEVKENLSAGTAFYENLITSTSNLYNEVQEYDTARRAEKARLDKSLTFEDQ", "length": 661 }, "evidence": [ { "id": "A0A287AH24", "url": "https://omabrowser.org/oma/group/A0A287AH24/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q8T7K0-1", "protein_name": "ALG-2 interacting protein X", "gene_name": "alxA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSIERKRTEKVDFSKPLTKYIKEQFSKAESDQHETQIATLNGLREDVRNLQERTETSKEMVWKYYSILSSLELRFPISENNVRISFPWTDSYRQRKSTLYSIYFERASVLFNYGSIVSQIASSTNRSNIEGVKKACNQFQLAAGVFNKLREYASLHPECSTSADFSSESLQALVTIMLAQAQECIYEKASMDNLSDSILSKLAAQVAEYYDTFNQLLNSNSLKSIVDRNWNITATVKSYLYKAISLYCHAKGLEQVSQFGEQVSRLMIAVDNINQSKVNLAKTAPIELKEIVERYVISITRYCESAKKDNDTIYHDTIPPAHKLTPIEKKPLAKALPLPEINFVDPFNSLVPFSVKEDSAYYNDQKETLLRKELDNIEFHNQSAKASLLSMGLPGSIEALDVGVPVALKEKMNVVTNEQGVSNITRLLENIQQLSDEDSAICLSAGNLLKKEEDEDNLMRATYGAQWHRTPSYTLTANLTQDYAKYTSHLQHSTKSDSFIRKKFEDHKNSIQELENQTEIIALLPTNNLPSGKIAEIASLTVLMNDLDALMANRESIAEKLKNLCKKDDITLKLLSPQKDKSLIYAEEIQKYEPLQMSLNESFLKQQKLIEDIRKENEKFTNQKSKQGNQREEILQKYANAYKVYNELKANLDEGTQFYLNFQEILNKFLNRCKDFTTGRENEKIELKRQIEAGVNPHSPLTSPSPSLQSPVNNYPNQFSSPQYHTSPNQQQQQQQQYVPSSQPPPQYSYNPQPYQPPQQFGGPLPPPQSFSAPPPPQSFTAPPPYNSNNKHY", "length": 794 }, "evidence": [ { "id": "A0A287AH24", "url": "https://omabrowser.org/oma/group/A0A287AH24/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8WUM4-1", "protein_name": "Programmed cell death 6-interacting protein", "gene_name": "PDCD6IP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPSPVGAGTAAPAPSQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQQPSYPFPQPPQQSYYPQQ", "length": 868 }, "evidence": [ { "id": "A0A287AH24", "url": "https://omabrowser.org/oma/group/A0A287AH24/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QZA2-1", "protein_name": "Programmed cell death 6-interacting protein", "gene_name": "Pdcd6ip", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASFIWVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRSALGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKTAAKQYQFASGAFLHIKDTVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDALPKYFYFQEVFPTLAAKQCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKNVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKPTPVNVPISQKFTDLFEKMVPVSVQQSLAVFSQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSTAVVEQGGIQTVDQLIKELPELLQRNREILEESLRLLDEEEATDNDLRAKFKDRWQRTPSNDLYKPLRAEGAKFRAVLDKAVQADGQVKERYQSHRDTIALLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEIKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRIYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNSEASLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPPPAYQSSPAGGHATAPTPAPRTMPPAKPQPPARPPPPVLPANRVPPAAAATAPAGVGTASAAPPQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYTYGQYNMPYPPVYHQSPGQAPYPGPQQPTYPFPQPPQQSYYPQQ", "length": 873 }, "evidence": [ { "id": "A0A287AH24", "url": "https://omabrowser.org/oma/group/A0A287AH24/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9VB05-1", "protein_name": "ALG-2 interacting protein X", "gene_name": "ALiX", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSKFLGVPLKKPSEVDVIKPLNNLIQSTYNGASEEEKGKYGEAVNEFSKQRNTAIWKFFEKYEASLEIVYAYYDQICALETKISVSELQIPFKWKDAFDKGSIFGGKISLTHTSLLYEKVCVLFNIAALQSNIAANQSLDSDDGLKLTIKLLQQSAGIFQYLKGATPAAVPSEPTPDLSQDTLTVLQALMVAQAQEVFILKAIKDNLKDQIIAKLCCQAEESYADVLRAMQKESVRSLWEKEWIPTIAGKQAGFHALTQLYQSLVCRAAKKIGEEIARLRNAIDLFKAAQTRSGNETYLDEYFSRAKRNLTESTKDNEFIYNEIIPELSTLTSPGKAQLAKPLPIAVPLAENFKDIFSSLVPVELHRALTASDMRRNEIVNVEIMKLREATQTLNAVLASLNLPAAVETADGNSGLPPSLKEKANEVRQKGGIENVQTMLKDLPELLNRNREILDETERLLDEERDSDNQLRAQFKDRWTRISSDKLTEMFRTNAKKYREVITNAIEADKVVRQKFEANQKGIQLLSLPPDQIQQSLPSASGSVDPNCSSVQRLKKLMDDVETIKAEREAIESELKGATFNMKDEFLIALQKDGAIDEPALSLARIGQVLNPLQQQVRESVERQQSLVSEIQSAHGAFVSETGSCGSSRDTLYQELATAFDSYIELSGNLQEGTKFYNDLTQLLVVFQNKISDFVFARKTEKEELLKDLTTESSRQACPATPALPSHYASTSGSGSDIPPGSAPSVPPAASTANIPYPAQVQGMPIPYGAQPGVPYPAYVPAPMPQSFNPYATLPYPGNYQYQGFPQGPPPGHYGTYPGSYANQQGGYPNQKPPGW", "length": 836 }, "evidence": [ { "id": "A0A287AH24", "url": "https://omabrowser.org/oma/group/A0A287AH24/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9WU78-1", "protein_name": "Programmed cell death 6-interacting protein", "gene_name": "Pdcd6ip", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASFIWVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRSALGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKTAAKQYQFASGAFLHIKDTVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPTLAAKQCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKNVASRYDEYVNVKDFSDKINRALTAAKKDNDFIYHDRVPDLKDLDPIGKATLVKPTPVNVPVSQKFTDLFEKMVPVSVQQSLAVFSQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSTSVVEQGGIQTVDQLIKELPELLQRNREILEESLRLLDEEEATDNDLRAKFKDRWQRTPSNDLYKPLRAEGAKFRAVLDKAVQADGQVKERYQSHRDTIALLCKPEPELNAAIPSANPAKTMQGSEVVSVLKSLLSNLDEIKKERESLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRIYGGLTSKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPPPAYQSSPAAGHAAAPPTPAPRTMPPAKPQPPARPPPPVLPANRVPPASAAAAPAGVGTASAAPPQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQQPTYPFPQPPQQSYYPQQ", "length": 869 }, "evidence": [ { "id": "A0A287AH24", "url": "https://omabrowser.org/oma/group/A0A287AH24/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH24", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH24", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH24", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" } ], "pmid": "" }, { "name": "bicellular tight junction", "id": "GO:0005923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005923", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH24", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" } ], "pmid": "" }, { "name": "melanosome", "id": "GO:0042470", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042470", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH24", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" } ], "pmid": "" }, { "name": "Flemming body", "id": "GO:0090543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090543", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH24", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" } ], "pmid": "" }, { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH24", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH24", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" } ], "pmid": "" }, { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH24", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH24", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" } ], "pmid": "" }, { "name": "mitotic cytokinesis", "id": "GO:0000281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000281", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH24", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 379, "end_pos": 381, "annotation": "n_glycosylation_sequon" }, { "start_pos": 419, "end_pos": 421, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AH24-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 878, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AH24-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AH24" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AH24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AH24" }, { "id": "PS51180", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51180" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BRO1", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 392, "start_aa": "Thr", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 724, 741 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 379, "end_pos": 381 }, { "start_pos": 419, "end_pos": 421 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AHH2-1", "uniprot_ac": "A0A287AHH2", "uniprot_id": "A0A287AHH2_PIG", "mass": { "chemical_mass": 57189.0, "monoisotopic_mass": 57189.0 }, "refseq": { "ac": "XP_020936604", "name": "putative GTP-binding protein 6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936604" }, "gene_names": [ { "name": "LOC110258925", "type": "recommended", "evidence": [ { "id": "A0A287AHH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2" } ] }, { "name": "LOC110257936", "type": "synonym", "evidence": [ { "id": "XP_020936604", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936604" } ] } ], "protein_names": [ { "name": "Putative GTP-binding protein 6", "type": "recommended", "evidence": [ { "id": "A0A287AHH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2/entry#names_and_taxonomy" } ] }, { "name": "putative GTP-binding protein 6", "type": "synonym", "evidence": [ { "id": "XP_020936604", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936604" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AHH2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110258925", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000033858", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033858", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01878", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01878", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110257936", "url": "https://www.ncbi.nlm.nih.gov/gene/110257936", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016496", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016496", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110257936", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257936", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IDVANKC", "url": "https://omabrowser.org/oma/group/IDVANKC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AHH2", "url": "https://www.orthodb.org/?gene=A0A287AHH2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10229", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10229", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10229:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10229:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13167", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13167", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16360", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16360", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020936604", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936604", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A662", "url": "https://www.uniprot.org/uniprotkb/A0A287A662", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A662-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A662-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHH2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWALRAAVRPGARLSRVVRGCGAPKAAPPLPPCPKRTVAAFRGGAGGPEGREGGRWSPGANGWRSRAGEEEEEPEDAEEEEEEEELLRRDPLLPAGTQRVFLIHPEVKWGPRKPQGTRAEWQVAEAQALVRTLDGWSVVDTAVVPTKTPDRRLIFGKGTLEHLTEKIRGSREVSAVFLNVERMATPTKKELEATWGVQVFDRFTVVLHIFRCNARTKEARLQVALAELPLLRSHLKSDIGHLDGRGGGSRYIMGSGESSLQVQQRLLKDKEVRIRRALERLRGKRLLLGRQRRRREFPVISVVGYTNCGKTTLIKALTGDAAVQPRDQLFATLDVTAHAGSLPSRMAVIYMDTIGFLSQLPHSLIESFSATLEDVAHSDLIVHVRDVSHPETELQKDSVLSALRGLRLPAVLLDNVLEVHNKVDLVPGYKPMGPHAVAVSALLGLGLEELKARLEDAVLTATGRRVLTLRVRLAGAQLSWLHKEATVQAVDVMPEAGAADVKVIISHSAYGRFRKLFPE", "length": 519, "header": "tr|A0A287AHH2-1|A0A287AHH2_PIG Isoform 1 of Putative GTP-binding protein 6 OS=Sus scrofa OX=9823 GN=LOC110258925 PE=4 SV=1 CANONICAL=A0A287AHH2-1" }, "isoforms": [ { "isoform_ac": "A0A287A662-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2/entry#A0A287A662-1", "sequence": { "sequence": "MWALRAAVRPGARLSRVVRGCGAPKAAPPLPPCPKRTVAAFRGGAGGPEGREGGRWSPGANGWRSRAGEEEEEPEDAEEEEEEEELLRRDPLLPAGTQRVFLIHPEVKWGPRKPQGTREKIRGSREVSAVFLNVERMATPTKKELEATWGVQVFDRFTVVLHIFRCNARTKEARLQVALAELPLLRSHLKSDIGHLDGRGGGSRYIMGSGESSLQVQQRLLKDKEVRIRRALERLRGKRLLLGRQRRRREFPVISVVGYTNCGKTTLIKALTGDAAVQPRDQLFATLDVTAHAGSLPSRMAVIYMDTIGFLSQLPHSLIESFSATLEDVAHSDLIVHVRDVSHPETELQKDSVLSALRGLRLPAVLLDNVLEVHNKVDLVPGYKPMGPHAVAVSALLGLGLEELKARLEDAVLTATGRRVLTLRVRLAGAQLSWLHKEATVQAVDVMPEAGAADVKVIISHSAYGRFRKLFPE", "length": 473, "header": "tr|A0A287A662-1|A0A287AHH2_PIG Computationally mapped isoform of Putative GTP-binding protein 6 OS=Sus scrofa OX=9823 GN=LOC110258925 PE=4 SV=2 CANONICAL=A0A287AHH2-1" }, "locus": { "chromosome": "Y", "start_pos": 6996294, "end_pos": 6987197, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060483.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060483.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039464.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039464.2" } ] } }, { "isoform_ac": "A0A287AHH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2/entry#A0A287AHH2-1", "sequence": { "sequence": "MWALRAAVRPGARLSRVVRGCGAPKAAPPLPPCPKRTVAAFRGGAGGPEGREGGRWSPGANGWRSRAGEEEEEPEDAEEEEEEEELLRRDPLLPAGTQRVFLIHPEVKWGPRKPQGTRAEWQVAEAQALVRTLDGWSVVDTAVVPTKTPDRRLIFGKGTLEHLTEKIRGSREVSAVFLNVERMATPTKKELEATWGVQVFDRFTVVLHIFRCNARTKEARLQVALAELPLLRSHLKSDIGHLDGRGGGSRYIMGSGESSLQVQQRLLKDKEVRIRRALERLRGKRLLLGRQRRRREFPVISVVGYTNCGKTTLIKALTGDAAVQPRDQLFATLDVTAHAGSLPSRMAVIYMDTIGFLSQLPHSLIESFSATLEDVAHSDLIVHVRDVSHPETELQKDSVLSALRGLRLPAVLLDNVLEVHNKVDLVPGYKPMGPHAVAVSALLGLGLEELKARLEDAVLTATGRRVLTLRVRLAGAQLSWLHKEATVQAVDVMPEAGAADVKVIISHSAYGRFRKLFPE", "length": 519, "header": "tr|A0A287AHH2-1|A0A287AHH2_PIG Isoform 1 of Putative GTP-binding protein 6 OS=Sus scrofa OX=9823 GN=LOC110258925 PE=4 SV=1 CANONICAL=A0A287AHH2-1" }, "locus": { "chromosome": "AEMK02000451.1", "start_pos": 219062, "end_pos": 209970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055135.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055135.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040822.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040822.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHH2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110257936", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257936", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M5K1-1", "protein_name": "Putative GTP-binding protein 6", "gene_name": "LOC132342096", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWALRAAGRGGAWLSRAVRGCRPPRAALLPPPPHPERALAAVRGGLGCSEGREGGGGGSRADGQRSRADGEEEPKDAEEEEDEEELLRRDPLLPAGTQRVCLVHPEVKWGPGKTQGTRAEWQVAEARALVCTLDGWLVVDTMVVRTTTPDKKLIFGRGTLEQLTERIRGSPEITSVFLNVERLATPTKKDLEAAWRVPVFDRFTVVLHIFRCNARTKEARLQVALAELPLLRSHVKSNVAHLGGRGRSSRYTMGSGESFLQLQQRLLRDREAKIQKALERLRCKRRLLGQQRRRKEFPVVSVVGYTNCGKTTLIKALTGDAAIQPRNQLFATLDITAHAGRLPSALTVLYMDTIGFLSQLPHSLVESFSATLQDVAHSDLIVHVRDVSHPETELQKASVLSALWGLGLPDALLESMVEVHNKVDLVPGYTPVEPDVLAVSALLGLGLDELMARVEDAVLRATGRRTLTLRVRLAGPQLRSACPAWPARTHLHESRRVHHVDEVQVPLRAVLHVCDPQVQVPHASIQLLRDAQHLHTGVGHRCRAQGGPASARRRSRGLGPR", "length": 561 }, "evidence": [ { "id": "A0A287AHH2", "url": "https://omabrowser.org/oma/group/A0A287AHH2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I5ZU18-1", "protein_name": "Putative GTP-binding protein 6", "gene_name": "Gtpbp6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRRAVLPVCHCFTHPGARARAMLFPRVAALPGIWLLRVRRVQHALSLAGTLPRPVRAVSAGSRALGSVWASDGPVRGGGPEDPREDEEEEELLRVPPLLPFDAQRVCVLHPDVKRPAGKTPRSTAEWQVAEAAALVRALPGWSVARTLVVSSAAPGSRQVFGKGNFRDLTEKIRGCQDITSVFLNVERMTPQTQKELETAWGLRVFDRFTLVLHIFRCNARTREARMQLALAEIPLLRSSVSGDSEQQDQQGWGSRYIMGSGESFSELRARALRDRELRLRRVLERLRDKRRLMRKERVRREFPVVSVVGYTNCGKTTLIRALTGEATLQPRDQPFATLDVTVHEGRLPSRLRVLYVDTIGFLSQLPHSLIHAFSATLEDVAYSDVLVHVTDVSHPDAELQKATVLSTLRGLGLRPALLESAVEVHSKVDLVPGHTTPCSGALAVSAVSGRGLDELKAALEASVLRATGRQLLTIRVRLGGPQLGWLYNEAVVQQVQELPEGGAAHVTVVITQAAYGRFQKLFPTDITSDPHTD", "length": 534 }, "evidence": [ { "id": "A0A287AHH2", "url": "https://omabrowser.org/oma/group/A0A287AHH2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0XDH5-1", "protein_name": "Putative GTP-binding protein 6", "gene_name": "GTPBP6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGPGRLSRALLLHCRRALGAARCPLKPPYGRSLGAAAAFRLCAPQRPPDGRAGGRGRWKGAAGAGRDDDNNDDDEDEEEEEEGDEDEEDDAELEELLGPSPLGPQFGAHRVAVVHPAVRWGPKKPLLTTAELQMAEAVALVDTLQNWTVLDKIIIPTKNPDKKFIFGKGNFEALTERIKKLPHVTAVFLNVERISSVTKKELEDAWGVKVFDRYTVVLHIFRCNARTKEAKLQIALAEIPLLRSNLKTEVSHLDQQRGGSRYIMGSGETFMETQNRLLREKELKIRNALEKLRKKRSLLRTQRRKREFPIISVMGYTNCGKTTLIKALTGDAGIQPRDQLFATLDITAHAGYLPSHMAVIYVDTIGFLSELPHNLVESFSATLEEVAYSDLIVHVRDITHPETILQKASVLSVLKDLNLPSHLLESMVEVHNKVDLIESYQPTEENALAISALHGHGLEELKEEIEKKILEATGKKMLTITVNLQGPQLSWLYKESTVQEVDVMPDDGTARVKVIISNSAFGKYRNLFPNSKFFVS", "length": 536 }, "evidence": [ { "id": "A0A287AHH2", "url": "https://omabrowser.org/oma/group/A0A287AHH2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O43824-1", "protein_name": "Putative GTP-binding protein 6", "gene_name": "GTPBP6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWALRAAVRPGLRLSRVGRGRSAPRAAAPSCPARALAAVGRRSPGNLEGPWGGGRGLRADGGRSRTGDDEEEPEDADENAEEELLRGEPLLPAGTQRVCLVHPDVKWGPGKSQMTRAEWQVAEATALVHTLDGWSVVQTMVVSTKTPDRKLIFGKGNFEHLTEKIRGSPDITCVFLNVERMAAPTKKELEAAWGVEVFDRFTVVLHIFRCNARTKEARLQVALAEMPLHRSNLKRDVAHLYRGVGSRYIMGSGESFMQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKALTGDAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDLILHVRDVSHPEAELQKCSVLSTLRGLQLPAPLLDSMVEVHNKVDLVPGYSPTEPNVVPVSALRGHGLQELKAELDAAVLKATGRQILTLRVRLAGAQLSWLYKEATVQEVDVIPEDGAADVRVIISNSAYGKFRKLFPG", "length": 516 }, "evidence": [ { "id": "A0A287AHH2", "url": "https://omabrowser.org/oma/group/A0A287AHH2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3U6U5-1", "protein_name": "Putative GTP-binding protein 6", "gene_name": "Gtpbp6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFLRAAVLPGFWLPRVRRVQLVRSPAVTLPSPVRTVHAGSRVWGSAWAGGGPVRGGGEEDPREDEEEEEDELLRAPPLLPLDTQRVCVLHPDVKRPAGKKPRSTAEWQVAEAAALVRALPGWSVASTLVVPSAAPGSRLVFGKGNFQDVTEKIKGCQDITSVFLNVERMAPPTKKELESAWGLRVFDRFTLVLHIFRCNARTREARMQLALAEIPLLRSSVNTDSGQQDQQGWGSRYIMGSGESPTELRARALRDRELRLRRVLERLRDKRRLMRKERVRREFPVVSVVGYTNCGKTTLIQALTGEAALQPRDQPFATLDVTVHAGLLPSRLRILYVDTIGFLSQLPHNLIHAFSATLEDVAYSDVLVHVTDVSHPDAELQKATVLSTLRGLHLPPALLESALEVHSKVDLVPGYTPPCSGALAVSAISGRGLDELKAALEASVLRATGRQVLTLCVRLGGPQLGWLYKEAVVQQVQELPEGDAAHVTVVITQAAYGRFRKLFPIDAPSALPH", "length": 514 }, "evidence": [ { "id": "A0A287AHH2", "url": "https://omabrowser.org/oma/group/A0A287AHH2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VBQ7-1", "protein_name": "Hflx-type G domain-containing protein", "gene_name": "Dmel\\CG5116", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSALRILARFVSTRTLRIRPILEIPARCKYTQHQGVKGIRNRKSFFEAQIQAGQQGEEDADLERTANSDLADMRFLDDRAYDEVAGGAMRITRDIASSQQVLILQPYVKWAAKRQNAPVDVRPEDQLAEATALIHSLPNWQVARALKVPLESLEKKTLFGSGKLVELKELVAELRQERHLTCLFVSKGTLSFAQKRFLEAEFRLPVMDRYSVVIQILRLHATSAEAKLQVAMAELPYIWAQAKDASVTQTRRQGYALTDLQKEILRTRERKLRAELDRVRRQRQLLRQKRKQQNYPIVAVVGYTNAGKTSLIKALTVEDALQPRNQLFATLDVTAHAGCLPCNLEVIYMDTVGFMSDLPTGLFECFVATLEDAMLADVIVHVQDLSHPCHAAQRSHVEATLRSLAFNVAGGDSTASQLPPIINVYNKCDLVSQEAQSSADPVHHISARAQTGLEPLLDDIEQQILTATGRRKLQMRVPSGGPEMAWLYKNAAVVETTADAENPERLMMHVVISQRTLDQFKRQFCR", "length": 526 }, "evidence": [ { "id": "A0A287AHH2", "url": "https://omabrowser.org/oma/group/A0A287AHH2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHH2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHH2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2" } ], "pmid": "" }, { "name": "ribosome binding", "id": "GO:0043022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043022", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHH2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHH2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AHH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHH2" }, { "id": "PS51705", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51705" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Hflx-type G", "eco_id": "ECO_0000259", "start_pos": 298, "end_pos": 462, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AKR8-1", "uniprot_ac": "A0A287AKR8", "uniprot_id": "A0A287AKR8_PIG", "mass": { "chemical_mass": 15705.0, "monoisotopic_mass": 15705.0 }, "refseq": { "ac": "NP_001422260", "name": "L antigen family member 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422260" }, "gene_names": [ { "name": "LAGE3", "type": "recommended", "evidence": [ { "id": "A0A287AKR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKR8" } ] }, { "name": "LAGE3", "type": "synonym", "evidence": [ { "id": "NP_001422260", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422260" } ] } ], "protein_names": [ { "name": "L antigen family member 3", "type": "recommended", "evidence": [ { "id": "A0A287AKR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKR8/entry#names_and_taxonomy" } ] }, { "name": "L antigen family member 3", "type": "synonym", "evidence": [ { "id": "NP_001422260", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422260" } ] } ], "function": [ { "annotation": "Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. LAGE3 functions as a dimerization module for the complex.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7E4", "url": "https://www.uniprot.org/uniprotkb/A0A287A7E4#function" }, { "database": "UniProtKB", "id": "ARBA00053047", "url": "https://www.uniprot.org/uniprotkb/ARBA00053047#function" }, { "database": "UniProtKB", "id": "A0A287AKR8", "url": "https://www.uniprot.org/uniprotkb/A0A287AKR8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AKR8", "url": "https://www.uniprot.org/uniprotkb/A0A287AKR8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LAGE3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKR8", "locus": {} } ], "crossref": [ { "id": "A0A287AKR8", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AKR8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032959", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032959", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100622898", "url": "https://www.ncbi.nlm.nih.gov/gene/100622898", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015419", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015419", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31283", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31283", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31283:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31283:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09341", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09341", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001422260", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422260", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A7E4", "url": "https://www.uniprot.org/uniprotkb/A0A287A7E4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A7E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7E4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKR8", "url": "https://www.uniprot.org/uniprotkb/A0A287AKR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQAADAAAGASGAAGGSEGPGRRGAPGGRGRPRGAGAAAVAAAGVPPVAPAQRTSEEGGDPASAAKRPRSRAHVFALSVPFPSSWEAEIARGSLAPDAEPHRGAVGKELTVSGSDLAVHWRADDSRLLRISIVNFLDQLSLVIRTMQRFGPPVSR", "length": 155, "header": "tr|A0A287AKR8-1|A0A287AKR8_PIG Isoform 1 of L antigen family member 3 OS=Sus scrofa OX=9823 GN=LAGE3 PE=1 SV=2 CANONICAL=A0A287AKR8-1" }, "isoforms": [ { "isoform_ac": "A0A287A7E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKR8/entry#A0A287A7E4-1", "sequence": { "sequence": "MQAADAAAGASGAAGGSEGPGRRGAPAAAGVPPVAPAQRTSEEGGDPASAAKRPRSRAHVFALSVPFPSSWEAEIARGSLAPDAEPHRGAVGKELTVSGSDLAVHWRADDSRLLRISIVNFLDQLSLVIRTMQRFGPPVSR", "length": 141, "header": "tr|A0A287A7E4-1|A0A287AKR8_PIG Computationally mapped isoform of L antigen family member 3 OS=Sus scrofa OX=9823 GN=LAGE3 PE=1 SV=2 CANONICAL=A0A287AKR8-1" }, "locus": { "chromosome": "X", "start_pos": 125002834, "end_pos": 125001887, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046886.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046886.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039799.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039799.2" } ] } }, { "isoform_ac": "A0A287AKR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKR8/entry#A0A287AKR8-1", "sequence": { "sequence": "MQAADAAAGASGAAGGSEGPGRRGAPGGRGRPRGAGAAAVAAAGVPPVAPAQRTSEEGGDPASAAKRPRSRAHVFALSVPFPSSWEAEIARGSLAPDAEPHRGAVGKELTVSGSDLAVHWRADDSRLLRISIVNFLDQLSLVIRTMQRFGPPVSR", "length": 155, "header": "tr|A0A287AKR8-1|A0A287AKR8_PIG Isoform 1 of L antigen family member 3 OS=Sus scrofa OX=9823 GN=LAGE3 PE=1 SV=2 CANONICAL=A0A287AKR8-1" }, "locus": { "chromosome": "X", "start_pos": 125002834, "end_pos": 125001887, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059152.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059152.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044492.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044492.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7E4", "url": "https://www.uniprot.org/uniprotkb/A0A287A7E4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKR8", "url": "https://www.uniprot.org/uniprotkb/A0A287AKR8" } ], 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"https://www.uniprot.org/uniprotkb/A0A287AKR8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AKR8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 155, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AKR8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AKR8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AMQ7-1", "uniprot_ac": "A0A287AMQ7", "uniprot_id": "A0A287AMQ7_PIG", "mass": { "chemical_mass": 73366.0, "monoisotopic_mass": 73366.0 }, "refseq": {}, "gene_names": [ { "name": "IQCE", "type": "recommended", "evidence": [ { "id": "A0A287AMQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AMQ7" } ] } ], "protein_names": [ { "name": "IQ motif containing E", "type": "synonym", "evidence": [ { "id": "A0A287AMQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AMQ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AMQ7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMQ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": 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"MSLGAGDPASETGDDSLSAITFDSDSETKAKRKSFHKPPPTSPKSPYHSKPRKVASWRALRTPASMPLGSRMSLTPQKLWLGSSKQGSLTPALKSELTLERAWTHPPSSIPDDLTEALRTKRSNLRRSASHGFVPGTPVYREKEDMYDEIIELKKSLHTQKSDVDLMRTKLRRLEEENSRKDRQIEQLLEPSRGPEFVRTLAEKRPDAGWVINGLKQRILKLEQQCKEKDNTINKLQTDMKTTNLEEMRAMETYYEIHRLQTLLASSETTGKKPPVEKKIGLKRQKKMSSALLSLSRSVQELTEENQSLKEDLDRVLSNSPTVSKIKGYVEWSKPRLLRRIAELEKKISSMESPTCHASEGASSTPPAYSACSSAVQRQPRPDRQEESERLRGAVKSLKGERSALQAQLQERDLEVKQLLQTKADLQRELETMQEGEKERREREEGLREEIRALTEKLRKLEERKKQEADGPVETTPEKKKAALDEAAVVLQAAFRGHLARVKLLSSRACGSEPPSVPSPPRQDPPRPLVPSPDVQAGGDPGQEEAITIIQSVFRAHLARARHSAAGARTTTATFTERSAWTLQDEPSAPPFPEASPEPPPPGQPPAGPPPAAEEVNSDDSDEIVLAVPLPAKRSASRPQASARCPGAAMLRQVRLEDK", "length": 659, "header": "tr|A0A287AMQ7-1|A0A287AMQ7_PIG Isoform 1 of IQ motif containing E OS=Sus scrofa OX=9823 GN=IQCE PE=4 SV=2 CANONICAL=A0A287AMQ7-1" }, "isoforms": [ { "isoform_ac": "A0A287A8P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMQ7/entry#A0A287A8P1-1", "sequence": { "sequence": 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"tr|A0A287AI28-1|A0A287AI28_PIG Computationally mapped isoform of IQ motif containing E OS=Sus scrofa OX=9823 GN=IQCE PE=4 SV=3 CANONICAL=A0A287AMQ7-1" }, "locus": { "chromosome": "3", "start_pos": 1902975, "end_pos": 1864437, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052196.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052196.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043553.3", "url": "https://www.ensembl.org/id/ENSSSCP00000043553.3" } ] } }, { "isoform_ac": "A0A287AMQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMQ7/entry#A0A287AMQ7-1", "sequence": { "sequence": "MSLGAGDPASETGDDSLSAITFDSDSETKAKRKSFHKPPPTSPKSPYHSKPRKVASWRALRTPASMPLGSRMSLTPQKLWLGSSKQGSLTPALKSELTLERAWTHPPSSIPDDLTEALRTKRSNLRRSASHGFVPGTPVYREKEDMYDEIIELKKSLHTQKSDVDLMRTKLRRLEEENSRKDRQIEQLLEPSRGPEFVRTLAEKRPDAGWVINGLKQRILKLEQQCKEKDNTINKLQTDMKTTNLEEMRAMETYYEIHRLQTLLASSETTGKKPPVEKKIGLKRQKKMSSALLSLSRSVQELTEENQSLKEDLDRVLSNSPTVSKIKGYVEWSKPRLLRRIAELEKKISSMESPTCHASEGASSTPPAYSACSSAVQRQPRPDRQEESERLRGAVKSLKGERSALQAQLQERDLEVKQLLQTKADLQRELETMQEGEKERREREEGLREEIRALTEKLRKLEERKKQEADGPVETTPEKKKAALDEAAVVLQAAFRGHLARVKLLSSRACGSEPPSVPSPPRQDPPRPLVPSPDVQAGGDPGQEEAITIIQSVFRAHLARARHSAAGARTTTATFTERSAWTLQDEPSAPPFPEASPEPPPPGQPPAGPPPAAEEVNSDDSDEIVLAVPLPAKRSASRPQASARCPGAAMLRQVRLEDK", "length": 659, "header": "tr|A0A287AMQ7-1|A0A287AMQ7_PIG Isoform 1 of IQ motif containing E OS=Sus scrofa OX=9823 GN=IQCE PE=4 SV=2 CANONICAL=A0A287AMQ7-1" }, "locus": { "chromosome": "3", "start_pos": 1902975, "end_pos": 1864437, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053404.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053404.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045202.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045202.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8P1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8P1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5635838", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5635838", "resource": "Reactome", "description": "Activation of SMO" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "limb morphogenesis", "id": "GO:0035108", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035108", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMQ7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMQ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 306, "end_pos": 308, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AMQ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 659, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AMQ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AMQ7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 306, "end_pos": 308 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AH66-1", "uniprot_ac": "A0A287AH66", "uniprot_id": "A0A287AH66_PIG", "mass": { "chemical_mass": 101881.0, "monoisotopic_mass": 101881.0 }, "refseq": {}, "gene_names": [ { "name": "TCAF1", "type": "recommended", "evidence": [ { "id": "A0A287AH66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AH66" } ] } ], "protein_names": [ { "name": "TRPM8 channel associated factor 1", "type": "synonym", "evidence": [ { "id": "A0A287AH66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AH66/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AH66", "url": "https://www.uniprot.org/uniprotkb/A0A287AH66" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TCAF1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH66", "locus": { "chromosome": "18", "start_pos": 6623197, "end_pos": 6567359, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016453", "url": "https://www.ensembl.org/id/ENSSSCG00000016453" } ] } } ], "crossref": [ { "id": "A0A287AH66", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AH66", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016453", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016453", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029062", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029062", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031161", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031161", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042279", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042279", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519808", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519808", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AH66", "url": "https://www.orthodb.org/?gene=A0A287AH66", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A287APH1", "url": "https://www.orthodb.org/?gene=A0A287APH1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15730", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15730", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15730:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15730:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13402", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13402", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17291", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17291", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27016", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27016", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27027", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27027", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A9U0", "url": "https://www.uniprot.org/uniprotkb/A0A287A9U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9U0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9U0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AH66", "url": "https://www.uniprot.org/uniprotkb/A0A287AH66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AH66-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH66-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APH1", "url": "https://www.uniprot.org/uniprotkb/A0A287APH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APH1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSJ0", "url": "https://www.uniprot.org/uniprotkb/F1SSJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSJ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SSJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATPSAAFEALMNGVTSWDVPEDAIPCELLLIGEASFPVMVNDMGQVLIAGSSYGRGRLVVVSHEDYLVEAQLTSFLLNAVGWLCSSPGAPVGVHPSLAPLAKILEGAGVEAKVEPEVKESLGVYCIDAYNETMTEKLVTFMKRGGGLLVGGQAWDWANQGDDERVLFTFPGNLVTSVAGVYFTDNKGDTSFFKVSKKMPKIPVLVSCEDDLSEDRDELLHGISELDISNSDCFPSQLLVHGALAFPLGLDSYHGCVIAAARYGRGRVVVTGHKVLFTVGKLGPFLLNAVRWLDGGRRGKIVVQTELRTLSGLLAVGGIDTSIEPNLTSDASVYCFEPVSDVGVKELQEFVAEGGGLFVGAQAWWWAFKNPGVSPLARFPGNLLLNPFGISITSQSLNPGPFRTPKAGIRTYHFRSTLAEFQVIMGRKRGNVEKGWLAKLGPDGAAFLQIPAEDVPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRGAMLSLATGLAHSGSDLSLLVPEIEDMYSSPYLRPSESPITVEVNCNNPGTRYCWMSTGLYIPGRQIIEVSLPEAAASADLKVQIGCHTDDLTRASKLFRGPLVINRCCLDKPTKSITCLWGGLLYIIVPQSSKLGTVPVTVKGAVHAPYYKLGETSQEEWKRRVQENPGPWGELATDNIILTVPAASLRALENPEPLLRLWDEVMQAVARLGAEPFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELINEKLIRTKGLWGPVHELGRNQQRQEWEFPPHTTEATCNLWCVYVHETVLGIPRGRANIALWPPVREKRVRIYLGKGPNVKNWNAWTALETYLQLQEAFGWEPFIRLFTEYRNQTNLPTDNVDKMNLWVKMFSHQVQKNLAPFFEAWAWPIQKEVATSLAYLPEWKENIMKLYLLTQMPH", "length": 921, "header": "tr|A0A287AH66-1|A0A287AH66_PIG Isoform 1 of TRPM8 channel associated factor 1 OS=Sus scrofa OX=9823 GN=TCAF1 PE=1 SV=1 CANONICAL=A0A287AH66-1" }, "isoforms": [ { "isoform_ac": "A0A287A9U0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH66/entry#A0A287A9U0-1", "sequence": { "sequence": "MGGHRNAQPTGPATQRSPVPCQAPPLGSWSRPGGSGEEGTGREPLPSSRSVSSPLACLAGTPLARGTERPPLHAALLPQAAPVEVVGRPEAGPAMATPSAAFEALMNGVTSWDVPEDAIPCELLLIGEASFPVMVNDMGQVLIAGSSYGRGRLVVVSHEDYLVEAQLTSFLLNAVGWLCSSPGAPVGVHPSLAPLAKILEGAGVEAKVEPEVKESLGVYCIDAYNETMTEKLVTFMKRGGGLLVGGQAWDWANQGDDERVLFTFPGNLVTSVAGVYFTDNKGDTSFFKVSKKMPKIPVLVSCEDDLSEDRDELLHGISELDISNSDCFPSQLLVHGALAFPLGLDSYHGCVIAAARYGRGRVVVTGHKVLFTVGKLGPFLLNAVRWLDGGRRGKIVVQTELRTLSGLLAVGGIDTSIEPNLTSDASVYCFEPVSDVGVKELQEFVAEGGGLFVGAQAWWWAFKNPGVSPLARFPGNLLLNPFGISITSQSLNPGPFRTPKAGIRTYHFRSTLAEFQVIMGRKRGNVEKGWLAKLGPDGAAFLQIPAEDVPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRGAMLSLATGLAHSGSDLSLLVPEIEDMYSSPYLRPSESPITVEVNCNNPGTRYCWMSTGLYIPGRQIIEVSLPEAAASADLKVQIGCHTDDLTRASKLFRGPLVINRCCLDKPTKSITCLWGGLLYIIVPQSSKLGTVPVTVKGAVHAPYYKLGETSQEEWKRRVQENPGPWGELATDNIILTVPAASLRALENPEPLLRLWDEVMQAVARLGAEPFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELINEKLIRTKGLWGPVHELGRNQQRQEWEFPPHTTEATCNLWCVYVHETVLGIPRGRANIALWPPVREKRVRIYLGKGPNVKNWNAWTALETYLQLQEAFGWEPFIRLFTEYRNQTNLPTDNVDKMNLWVKMFSHQVQKNLAPFFEAWAWPIQKEVATSLAYLPEWKENIMKLYLLTQM", "length": 1013, "header": "tr|A0A287A9U0-1|A0A287AH66_PIG Computationally mapped isoform of TRPM8 channel associated factor 1 OS=Sus scrofa OX=9823 GN=TCAF1 PE=1 SV=2 CANONICAL=A0A287AH66-1" }, "locus": { "chromosome": "18", "start_pos": 6616403, "end_pos": 6590229, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048067.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048067.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040709.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040709.2" } ] } }, { "isoform_ac": "A0A287AH66-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH66/entry#A0A287AH66-1", "sequence": { "sequence": "MATPSAAFEALMNGVTSWDVPEDAIPCELLLIGEASFPVMVNDMGQVLIAGSSYGRGRLVVVSHEDYLVEAQLTSFLLNAVGWLCSSPGAPVGVHPSLAPLAKILEGAGVEAKVEPEVKESLGVYCIDAYNETMTEKLVTFMKRGGGLLVGGQAWDWANQGDDERVLFTFPGNLVTSVAGVYFTDNKGDTSFFKVSKKMPKIPVLVSCEDDLSEDRDELLHGISELDISNSDCFPSQLLVHGALAFPLGLDSYHGCVIAAARYGRGRVVVTGHKVLFTVGKLGPFLLNAVRWLDGGRRGKIVVQTELRTLSGLLAVGGIDTSIEPNLTSDASVYCFEPVSDVGVKELQEFVAEGGGLFVGAQAWWWAFKNPGVSPLARFPGNLLLNPFGISITSQSLNPGPFRTPKAGIRTYHFRSTLAEFQVIMGRKRGNVEKGWLAKLGPDGAAFLQIPAEDVPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRGAMLSLATGLAHSGSDLSLLVPEIEDMYSSPYLRPSESPITVEVNCNNPGTRYCWMSTGLYIPGRQIIEVSLPEAAASADLKVQIGCHTDDLTRASKLFRGPLVINRCCLDKPTKSITCLWGGLLYIIVPQSSKLGTVPVTVKGAVHAPYYKLGETSQEEWKRRVQENPGPWGELATDNIILTVPAASLRALENPEPLLRLWDEVMQAVARLGAEPFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELINEKLIRTKGLWGPVHELGRNQQRQEWEFPPHTTEATCNLWCVYVHETVLGIPRGRANIALWPPVREKRVRIYLGKGPNVKNWNAWTALETYLQLQEAFGWEPFIRLFTEYRNQTNLPTDNVDKMNLWVKMFSHQVQKNLAPFFEAWAWPIQKEVATSLAYLPEWKENIMKLYLLTQMPH", "length": 921, "header": "tr|A0A287AH66-1|A0A287AH66_PIG Isoform 1 of TRPM8 channel associated factor 1 OS=Sus scrofa OX=9823 GN=TCAF1 PE=1 SV=1 CANONICAL=A0A287AH66-1" }, "locus": { "chromosome": "18", "start_pos": 6619272, "end_pos": 6595512, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051943.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051943.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043322.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043322.1" } ] } }, { "isoform_ac": "A0A287APH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH66/entry#A0A287APH1-1", "sequence": { "sequence": "MATPSAAFEALMNGVTSWDVPEDAIPCELLLIGEASFPVMVNDMGQVLIAGSSYGRGRLVVVSHEDYLVEAQLTSFLLNAVGWLCSSPGAPVGVHPSLAPLAKILEGAGVEAKVEPEVKESLGVYCIDAYNETMTEKLVTFMKRGGGLLVGGQAWDWANQGDDERVLFTFPGNLVTSVAGVYFTDNKGDTSFFKVSKKMPKIPVLVSCEDDLSEDRDELLHGISELDISNSDCFPSQLLVHGALAFPLGLDSYHGCVIAAARYGRGRVVVTGHKVLFTVGKLGPFLLNAVRWLDGGRRGKIVVQTELRTLSGLLAVGGIDTSIEPNLTSDASVYCFEPVSDVGVKELQEFVAEGGGLFVGAQAWWWAFKNPGVSPLARFPGNLLLNPFGISITSQSLNPGPFRTPKAGIRTYHFRSTLAEFQVIMGRKRGNVEKGWLAKLGPDGAAFLQIPAEDVPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRGAMLSLATGLAHSGSDLSLLVPEIEDMYSSPYLRPSESPITVEVNCNNPGTRYCWMSTGLYIPGRQIIEVSLPEAAASADLKVQIGCHTDDLTRASKLFRGPLVINRCCLDKPTKSITCLWGGLLYIIVPQSSKLGTVPVTVKGAVHAPYYKLGETSQEEWKRRVQENPGPWGELATDNIILTVPAASLRALENPEPLLRLWDEVMQAVARLGAEPFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELINEKLIRTKGLWGPVHELGRNQQRQEWEFPPHTTEATCNLWCVYVHETVLGIPRGRANIALWPPVREKRVRIYLGKGPNVKNWNAWTALETYLQLQEAFGWEPFIRLFTEYRNQTNLPTDNVDKMNLWVKMFSHQVQKNLAPFFEAWAWPIQKEVATSLAYLPEWKENIMKLYLLTQM", "length": 919, "header": "tr|A0A287APH1-1|A0A287APH1_PIG Computationally mapped isoform of TRPM8 channel associated factor 1 OS=Sus scrofa OX=9823 GN=TCAF1 PE=1 SV=1 CANONICAL=A0A287AH66-1" }, "locus": { "chromosome": "18", "start_pos": 6616403, "end_pos": 6595512, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062223.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062223.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045925.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045925.1" } ] } }, { "isoform_ac": "F1SSJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH66/entry#F1SSJ0-1", "sequence": { "sequence": "MTWARSSSPAPPTAEALTSFLLNAVGWLCSSPGAPVGVHPSLAPLAKILEGAGVEAKVEPEVKESLGVYCIDAYNETMTEKLVTFMKRGGGLLVGGQAWDWANQGDDERVLFTFPGNLVTSVAGVYFTDNKGDTSFFKVSKKMPKIPVLVSCEDDLSEDRDELLHGISELDISNSDCFPSQLLVHGALAFPLGLDSYHGCVIAAARYGRGRVVVTGHKVLFTVGKLGPFLLNAVRWLDGGRRGKIVVQTELRTLSGLLAVGGIDTSIEPNLTSDASVYCFEPVSDVGVKELQEFVAEGGGLFVGAQAWWWAFKNPGVSPLARFPGNLLLNPFGISITSQSLNPGPFRTPKAGIRTYHFRSTLAEFQVIMGRKRGNVEKGWLAKLGPDGAAFLQIPAEDVPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRGAMLSLATGLAHSGSDLSLLVPEIEDMYSSPYLRPSESPITVEVNCNNPGTRYCWMSTGLYIPGRQIIEVSLPEAAASADLKVQIGCHTDDLTRASKLFRGPLVINRCCLDKPTKSITCLWGGLLYIIVPQSSKLGTVPVTVKGAVHAPYYKLGETSQEEWKRRVQENPGPWGELATDNIILTVPAASLRALENPEPLLRLWDEVMQAVARLGAEPFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELINEKLIRTKGLWGPVHELGRNQQRQEWEFPPHTTEATCNLWCVYVHETVLGIPRGRANIALWPPVREKRVRIYLGKGPNVKNWNAWTALETYLQLQEAFGWEPFIRLFTEYRNQTNLPTDNVDKMNLWVKMFSHQVQKNLAPFFEAWAWPIQKEVATSLAYLPEWKENIMKLYLLTQM", "length": 863, "header": "tr|F1SSJ0-1|A0A287AH66_PIG Computationally mapped isoform of TRPM8 channel associated factor 1 OS=Sus scrofa OX=9823 GN=TCAF1 PE=1 SV=4 CANONICAL=A0A287AH66-1" }, "locus": { "chromosome": "18", "start_pos": 6616403, "end_pos": 6595636, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017916.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017916.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017435.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017435.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3, "start_aa": "Thr", "end_pos": 3, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSJ0", "url": "https://www.uniprot.org/uniprotkb/F1SSJ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519808", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519808", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH66", "url": "https://www.uniprot.org/uniprotkb/A0A287AH66" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of cell migration", "id": "GO:0030336", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030336", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH66", "url": "https://www.uniprot.org/uniprotkb/A0A287AH66" } ], "pmid": "" }, { "name": "positive regulation of protein targeting to membrane", "id": "GO:0090314", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090314", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH66", "url": 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Regulates the mitochondrial S-depalmitoylation of the nucleophilic active site residue of peroxiredoxin-5/PRDX5, a key antioxidant protein, therefore modulating mitochondrial antioxidant ability. 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GN=ABHD10 PE=1 SV=1 CANONICAL=A0A287AL53-1" }, "isoforms": [ { "isoform_ac": "A0A287ABD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL53/entry#A0A287ABD1-1", "sequence": { "sequence": "MAGVGLAAAASWVPCRRRGWAVVSFGFHRGLSALLARKPERAPWWLAACRQKTSVSFLSRPDLPNLAYKKLKGKSPGIIFIPGYISTMNGTKALAIEDFCKSLGHAYIRFDYSGIGNSDGNLKECTVGKWRKDVLSVIDELAEGPQTKKDIEMKGVWAMPSKYSEEGVYRIQYSVIKEAEHHCLLHSPIPVNCPIRLLHGMKDDVIPWHTSVQVADRVVSKDVDVILRKDSDHRMKEKADLQLLVYTIDDLIDKLSTVIN", "length": 260, "header": "tr|A0A287ABD1-1|A0A287AL53_PIG Computationally mapped isoform of Palmitoyl-protein thioesterase ABHD10, mitochondrial OS=Sus scrofa OX=9823 GN=ABHD10 PE=1 SV=1 CANONICAL=A0A287AL53-1" }, "locus": { "chromosome": "13", "start_pos": 147775873, "end_pos": 147761584, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061384.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061384.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041098.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041098.1" } ] } }, { "isoform_ac": "A0A287AL53-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL53/entry#A0A287AL53-1", "sequence": { "sequence": "MAGVGLAAAASWVPCRRRGWAVVSFGFHRGLSALLARKPERAPWWLAACRQKTSVSFLSRPDLPNLAYKKLKGKSPGIIFIPGYISTMNGTKALAIEDFCKSLGHAYIRFDYSGIGNSDGNLKECTVGKWRKDVLSVIDELAEGPQILVGSSLGGWLMLHAAIARPQKVVALVGIATAVDGLVTQFNQLPVETKKDIEMKGVWAMPSKYSEEGVYRIQYSVIKEAEHHCLLHSPIPVNCPIRLLHGMKDDVIPWHTSVQVADRVVSKDVDVILRKDSDHRMKEKADLQLLVYTIDDLIDKLSTVIN", "length": 306, "header": "tr|A0A287AL53-1|A0A287AL53_PIG Isoform 1 of Palmitoyl-protein thioesterase ABHD10, mitochondrial OS=Sus scrofa OX=9823 GN=ABHD10 PE=1 SV=1 CANONICAL=A0A287AL53-1" }, "locus": { "chromosome": "13", "start_pos": 147775873, "end_pos": 147761584, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051340.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051340.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044622.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044622.1" } ] } }, { "isoform_ac": "A0A5G2QS61-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL53/entry#A0A5G2QS61-1", "sequence": { "sequence": "MAGVGLAAAASWVPCRRRGWAVVSFGFHRGLSALLARKPERAPWWLAACRQKTSVSFLSRPDLPNLAYKKLKGKSPGIIFIPGYISTMNGTKALAIEDFCKSLGHAYIRFDYSGIGNSDGNLKECTVGKWRKDVLSVIDELAEGPQILVGSSLGGWLMLHAAIARPQKVVALVGIATAVDGLVTQFNQLPVEDSESKSYIFYSA", "length": 204, "header": "tr|A0A5G2QS61-1|A0A287AL53_PIG Computationally mapped isoform of Palmitoyl-protein thioesterase ABHD10, mitochondrial OS=Sus scrofa OX=9823 GN=ABHD10 PE=1 SV=1 CANONICAL=A0A287AL53-1" }, "locus": { "chromosome": "13", "start_pos": 147775873, "end_pos": 147762529, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080763.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080763.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066959.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066959.1" } ] } }, { "isoform_ac": "A0A8W4F641-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL53/entry#A0A8W4F641-1", "sequence": { "sequence": "MAGVGLAAAASWVPCRRRGWAVVSFGFHRGLSALLARKPERAPWWLAACRQKTSVSFLSRPDLPNLAYKKLKGKSPGIIFIPGYISTMNGTKALAIEDFCKSLGHAYIRFDYSGIGNSDGNLKECTVGKWRKDVLSVIDELAEGPQILVGSSLGGWLMLHAAIARPQKVVALVGIATAVDGLVTQFNQLPVEYLFYEHVRLANQLWNCFLA", "length": 211, "header": "tr|A0A8W4F641-1|A0A287AL53_PIG Computationally mapped isoform of Palmitoyl-protein thioesterase ABHD10, mitochondrial OS=Sus scrofa OX=9823 GN=ABHD10 PE=1 SV=1 CANONICAL=A0A287AL53-1" }, "locus": { "chromosome": "13", "start_pos": 147775873, "end_pos": 147766106, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104058.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104058.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074601.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074601.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS61" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623142", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623142", "resource": "KEGG Pathway" }, { "id": "R-SSC-156588", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156588", "resource": "Reactome", "description": "Glucuronidation" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5E9H9-1", "protein_name": "Palmitoyl-protein thioesterase ABHD10, mitochondrial", "gene_name": "ABHD10", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGVGLAAVPAWVPCRRWGLAAVTFGFHHGLSTLLARKTERAPQWLRACRHKTSISFLSRPDLPNLAYKRLKGKSPGIIFIPGYISNMNGTKALAIEEFCKSLGHAYIRFDYSGVGNSDGNLEECTVGKWRKDVLSIIDDLAEGPQILVGSSLGGWLMFHAAIARPQKVVALVGVATAVDGLVTQFNQLPIETKKEIEMKGVWPMPSKYSEEGVYRIQYSVIKEAEHHCLLHSPIPVKCPVRLLHGMKDDIVPWHTSVQVADRVVSTDVDVILRKNSDHRMKEKADIQLLVYTIDDLIDKLSTIVH", "length": 306 }, "evidence": [ { "id": "A0A287AL53", "url": "https://omabrowser.org/oma/group/A0A287AL53/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5I0K5-1", "protein_name": "Palmitoyl-protein thioesterase ABHD10, mitochondrial", "gene_name": "Abhd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAWVPCRKWGWAAVSFGRHRGLIASLARKPPWAWWLSACRQKTTLSFLKRPELPSLAYKRLKGKNPGIIFIPGYLSNMNGKKAVAIEEFCKSIGHAFIRFDYSGVGSSDGNLAECSVGKWRKDVLSILDDIAEGPQILVGSSLGGWLMLHAAIARPEKVIALIGIASATDGVVTQFHSLPVEMQKEIEMKGEWSLPSKYNKEGYYSIPYSFIKEAAHHCLLHSPIPVTCPVRLLHGMKDEIVPWHRSLQVADRVVSPDVDVILRKHSDHRMKETADIHLLICTIDDLIDKLSTVTH", "length": 297 }, "evidence": [ { "id": "A0A287AL53", "url": "https://omabrowser.org/oma/group/A0A287AL53/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6PE15-1", "protein_name": "Palmitoyl-protein thioesterase ABHD10, mitochondrial", "gene_name": "Abhd10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAWAPCRRWGWAAVSFGRHPGLSASLARKPPRAWWLSACRQKASLSFLNRSELPNLAYKRLKGKTPGIIFIPGYLSNMNGIKAVAVEEFCKSLGHAFIRFDYSGIGSSDGNLAECTVGKWRKDVLSILDDVAEGPQILVGSSLGGWLMLHAAIARPEKVIALIGIATAADGLVTQYHALPVETQKEIEMKGEWTLPSRYNKEGYFRIPYSFIKEAEHHCLLHSPIPVTCPVRLLHGMKDEIVPWQRSLQVADRIVSPDVDVILRKQGDHRMKEKADIHLLICTIDDLIDKLSTVVP", "length": 297 }, "evidence": [ { "id": "A0A287AL53", "url": "https://omabrowser.org/oma/group/A0A287AL53/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NUJ1-1", "protein_name": "Palmitoyl-protein thioesterase ABHD10, mitochondrial", "gene_name": "ABHD10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVARLAAVAAWVPCRSWGWAAVPFGPHRGLSVLLARIPQRAPRWLPACRQKTSLSFLNRPDLPNLAYKKLKGKSPGIIFIPGYLSYMNGTKALAIEEFCKSLGHACIRFDYSGVGSSDGNSEESTLGKWRKDVLSIIDDLADGPQILVGSSLGGWLMLHAAIARPEKVVALIGVATAADTLVTKFNQLPVELKKEVEMKGVWSMPSKYSEEGVYNVQYSFIKEAEHHCLLHSPIPVNCPIRLLHGMKDDIVPWHTSMQVADRVLSTDVDVILRKHSDHRMREKADIQLLVYTIDDLIDKLSTIVN", "length": 306 }, "evidence": [ { "id": "A0A287AL53", "url": "https://omabrowser.org/oma/group/A0A287AL53/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL53", "url": "https://www.uniprot.org/uniprotkb/A0A287AL53" } ], "pmid": "" }, { "name": "hydrolase activity, hydrolyzing O-glycosyl compounds", "id": "GO:0004553", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004553", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL53", "url": "https://www.uniprot.org/uniprotkb/A0A287AL53" } ], "pmid": "" }, { "name": "mycophenolic acid acyl-glucuronide esterase activity", "id": "GO:0102390", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0102390", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL53", "url": "https://www.uniprot.org/uniprotkb/A0A287AL53" } ], "pmid": "" }, { "name": "palmitoyl-(protein) hydrolase activity", "id": "GO:0008474", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008474", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL53", "url": "https://www.uniprot.org/uniprotkb/A0A287AL53" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL53", "url": "https://www.uniprot.org/uniprotkb/A0A287AL53" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL53", "url": "https://www.uniprot.org/uniprotkb/A0A287AL53" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "xenobiotic metabolic process", "id": "GO:0006805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006805", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL53", "url": "https://www.uniprot.org/uniprotkb/A0A287AL53" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19233", "name": "", "equation": "S-hexadecanoyl-L-cysteinyl-[protein] + H2O = L-cysteinyl-[protein] + hexadecanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19233", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19233" } ] }, { "id": "34179", "name": "", "equation": "mycophenolic acid O-acyl-beta-D-glucuronide + H2O = mycophenolate + D-glucuronate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "34179", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/34179" } ] }, { "id": "R-SSC-5694563", "name": "ABHD10 hydrolyses MPAG", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [ "R-ALL-5694574" ], "output_participant_list": [ "R-ALL-5694565", "R-ALL-5694569" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5694563", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5694563" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-5694565", "participant_name": "MPA [mitochondrial matrix]", "crossref": [ { "id": "62932", "database": "ChEBI", "url": "" }, { "id": "ZINC000000001758", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-5694569", "participant_name": "GlcA [mitochondrial matrix]", "crossref": [ { "id": "15748", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-5694574", "participant_name": "AMPAG [mitochondrial matrix]", "crossref": [ { "id": "64689", "database": "ChEBI", "url": "" }, { "id": "ZINC000034108591", "database": "ZINC", "url": "" }, { "id": "HMDB0060491", "database": "HMDB Metabolite", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AL53-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 306, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AL53-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AL53" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AL53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AL53" }, { "id": "PF12146", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12146" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Serine aminopeptidase S33", "eco_id": "ECO_0000259", "start_pos": 78, "end_pos": 181, "start_aa": "Ile", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047825", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047825", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047876", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047876", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110260987", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260987", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AI32", "url": "https://www.orthodb.org/?gene=A0A287AI32", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15859", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15859", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15859:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15859:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02214", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020950056", "url": 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"MEAAALAADGVPSRGPPGEVIHLNVGGKRFSTSRQTLTWIPDSFFSSLLSGRISTLKDETGAIFIDRDPTVFAPILNFLRTKELDPRGVHGSSLLHEAQFYGLTPLVRRLQLLEELDRSSCGNVLFNGYLPAPVFPVKRRNRHSLAGPQQAGGRPAPVRRSNTMPPNLGNAGLLGRMLDEKAPPSPSGLPEEPGMVRLVCGHHNWIAVAYTHFLVCYRLKEASGWQLVFSSPRLDWPIERLALTARVLGGALGEHDKMVAAATGSEILLWALQAEGGGSEIGVFHLGVPVEALFFVGNQLIATSHTGRIGVWNAVTKHWQVQEVQPITSYDAAGSFLLLGCNNGSIYYVDVQKFPLRMKDNDLLVSELYHDPAEDGVTALSVYLTPKTSDSGNWIEIAYGTSSGGVRVIVQHPETVGSGPQLFQTFTVHRSPVTKIMLSEKHLISVCADNNHVRTWSVTRFRGMISTQPGSTPLASFKILALESADGHGGCSAGNDIGPYGERDDQQVFIQKVVPSASQLFVRLSSTGQRVCSVRSVDGSPTTAFTVLECEGSRRLGSRPRRYLLTGQANGSLAMWDLTTAMDGLGQAPAGGLTEEELMEQLEQCDLAPLASSRGSLPSPSPRTSLTSLHSAFSHTSLSSRRGSPSPPQAESRRRGGGSFVERCQELVRSGPEPRRPPTPAPRPSASLGAPLAPPKMKLNETSF", "length": 704, "header": "tr|A0A287AI32-1|A0A287AI32_PIG Isoform 1 of SH3KBP1-binding protein 1 OS=Sus scrofa OX=9823 GN=SHKBP1 PE=3 SV=2 CANONICAL=A0A287AI32-1" }, "isoforms": [ { "isoform_ac": "A0A287AF49-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AI32/entry#A0A287AF49-1", 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"MEAAALAADGVPSRGPPGEVIHLNVGGKRFSTSRQTLTWIPDSFFSSLLSGRISTLKDETGAIFIDRDPTVFAPILNFLRTKELDPRGVHGSSLLHEAQFYGLTPLVRRLQLLEELDRSSCGNVLFNGYLPAPVFPVKRRNRHSLAGPQQAGGRPAPVRRSNTMPPNLGNAGLLGRMLDEKAPPSPSGLPEEPGMVRLVCGHHNWIAVAYTHFLVCYRLKEASGWQLVFSSPRLDWPIERLALTARVLGGALGEHDKMVAAATGSEILLWALQAEGGGSEIGVFHLGVPVEALFFVGNQLIATSHTGRIGVWNAVTKHWQVQEVQPITSYDAAGSFLLLGCNNGSIYYVDVQKFPLRMKDNDLLVSELYHDPAEDGVTALSVYLTPKTSDSGNWIEIAYGTSSGGVRVIVQHPETVGSGPQLFQTFTVHRSPVTKIMLSEKHLISVCADNNHVRTWSVTRFRGMISTQPGSTPLASFKILALESADGHGGCSAGNDIGPYGERDDQQVFIQKVVPSASQLFVRLSSTGQRVCSVRSVDGSPTTAFTVLECEGSRRLGSRPRRYLLTGQANGSLAMWDLTTAMDGLGQAPAGGLTEEELMEQLEQCDLAPLASSRGSLPSPSPRTSLTSLHSAFSHTSLSSRRGSPSPPQAESRRRGGGSFVERCQELVRSGPEPRRPPTPAPRPSASLGAPLAPPKMKLNETSF", "length": 704, "header": "tr|A0A287AI32-1|A0A287AI32_PIG Isoform 1 of SH3KBP1-binding protein 1 OS=Sus scrofa OX=9823 GN=SHKBP1 PE=3 SV=2 CANONICAL=A0A287AI32-1" }, "locus": { "chromosome": "6", "start_pos": 48826271, "end_pos": 48813223, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042300.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042300.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043540.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043540.2" } ] } }, { "isoform_ac": "A0A5G2RAU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AI32/entry#A0A5G2RAU6-1", "sequence": { "sequence": "MEAAALAADGVPSRGPPGEVIHLNVGGKRFSTSRQTLTWIPDSFFSSLLSGRISTLKDETGAIFIDRDPTVFAPILNFLRTKELDPRGVHGSSLLHEAQFYGLTPLVRRLQLLEELDRSSCGNVLFNGYLPAPVFPVKRRNRHSLAGPQQAGGRPAPVRRSNTMPPNLGNAGLLGRMLDEKAPPSPSGLPEEPGMVRLVCGHHNWIAVAYTHFLVCYRLKEASGWQLVFSSPRLDWPIERLALTARVLGGALGEHDKMVAAATGSEILLWALQAEGGGSEIGVFHLGVPVEALFFVGNQLIATSHTGRIGVWNAVTKHWQVQEVQPITSYDAAGSFLLLGCNNGSIYYVDVQKFPLRMKDNDLLVSELYHDPAEDGVTALSVYLTPKTSDSGNWIEIAYGTSSGGVRVIVQHPETVGSGPQLFQTFTVHRSPVTKIMLSEKHLISGPYGERDDQQVFIQKVVPSASQLFVRLSSTGQRVCSVRSVDGSPTTAFTVLECEGSRRLGSRPRRYLLTGQANGSLAMWDLTTAMDGLGQAPAGGLTEEELMEQLEQCDLAPLASSRGSLPSPSPRTSLTSLHSAFSHTSLSSRRGSPSPPQAESRRRGGGSFVERCQELVRSGPEPRRPPTPAPRPSASLGAPLAPPKMKLNETSF", "length": 652, "header": "tr|A0A5G2RAU6-1|A0A287AI32_PIG Computationally mapped isoform of SH3KBP1-binding protein 1 OS=Sus scrofa OX=9823 GN=SHKBP1 PE=3 SV=1 CANONICAL=A0A287AI32-1" }, "locus": { "chromosome": "6", "start_pos": 48826271, "end_pos": 48813223, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071298.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071298.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073455.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073455.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 679, "start_aa": "Thr", "end_pos": 679, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr679", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RAU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAU6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110260987", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260987", "resource": "KEGG Pathway" }, { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "A0A287AI32", "url": "https://www.uniprot.org/uniprotkb/A0A287AI32" } ], "pmid": "" }, { "name": "positive regulation of epidermal growth factor receptor signaling pathway", "id": "GO:0045742", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045742", "evidence": [ { "database": "UniProtKB", "id": "A0A287AI32", "url": "https://www.uniprot.org/uniprotkb/A0A287AI32" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "A0A287AI32", "url": "https://www.uniprot.org/uniprotkb/A0A287AI32" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A287AI32", "url": "https://www.uniprot.org/uniprotkb/A0A287AI32" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 570, "end_pos": 572, "annotation": "n_glycosylation_sequon" }, { "start_pos": 700, "end_pos": 702, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AI32-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 704, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": 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"GPR75", "type": "recommended", "evidence": [ { "id": "A0A287AG85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AG85" } ] }, { "name": "GPR75", "type": "synonym", "evidence": [ { "id": "NP_001191974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191974" } ] } ], "protein_names": [ { "name": "G protein-coupled receptor 75", "type": "synonym", "evidence": [ { "id": "A0A287AG85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AG85/entry#names_and_taxonomy" } ] }, { "name": "probable G-protein coupled receptor 75", "type": "synonym", "evidence": [ { "id": "NP_001191974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191974" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AG85", "url": "https://www.uniprot.org/uniprotkb/A0A287AG85" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GPR75", "url": "https://www.uniprot.org/uniprotkb/A0A287AG85", "locus": { "chromosome": "3", "start_pos": 87350637, "end_pos": 87341345, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008413", "url": "https://www.ensembl.org/id/ENSSSCG00000008413" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008413", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008413", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15007", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15007", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517153", "url": "https://www.ncbi.nlm.nih.gov/gene/100517153", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517153", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517153", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PFMGAPV", "url": "https://omabrowser.org/oma/group/PFMGAPV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AG85", "url": "https://www.orthodb.org/?gene=A0A287AG85", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24228:SF55", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24228:SF55", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001191974", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191974", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AG85", "url": "https://www.uniprot.org/uniprotkb/A0A287AG85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AG85-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AG85-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSTDHLQDASNTTLLHVPRSQGGNSTVLQGDLQDLIHTATLVTCTFLLAIIFCLGSYGNFIVFLSFFDPAFRKFRTNFDFMILNLSFCDLFICCVTAPMFTFVLFFSSASGIPDAFCFTFHLTSSGFIIMSLKTVAVIALHRLRMVLGKQPNRTASFPCTLLLTLLLWATSFTLATLATLKTSKSHLCLPMSSLIAREGKAILSLYVVDFTFCVAVVSVSYIMIAQTLRKNAHVRKCPPVITVDASRPQPFMGASGKGGGDPIQCTMPALYRNQNYNKLQHVQTHGYTKSPNQLPTPVASRLQLVSAVNLSTAKDSKAVVTCVIIVLSVLVCCLPLGISLVQVVLSSNGSFILYQFELFGFTLIFFKSGLNPFIYSRNSAGLRRKVLWCLQYIGLSFFCCKQKTRLRAMGKGNLEVNRNKSSHHETNSAYMLSPKPQKKFVDQACGPSHSKESVVSPRMSAGQQHYGQSSSTPINTRIEPYYSIYNSSPSQEESIPHNLQPVNSFGFATSYIAMHYHTTNDLMQEYDSTSAKQIPVPSV", "length": 540, "header": "tr|A0A287AG85-1|A0A287AG85_PIG Isoform 1 of G protein-coupled receptor 75 OS=Sus scrofa OX=9823 GN=GPR75 PE=4 SV=1 CANONICAL=A0A287AG85-1" }, "isoforms": [ { "isoform_ac": "A0A287AG85-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AG85/entry#A0A287AG85-1", "sequence": { "sequence": "MNSTDHLQDASNTTLLHVPRSQGGNSTVLQGDLQDLIHTATLVTCTFLLAIIFCLGSYGNFIVFLSFFDPAFRKFRTNFDFMILNLSFCDLFICCVTAPMFTFVLFFSSASGIPDAFCFTFHLTSSGFIIMSLKTVAVIALHRLRMVLGKQPNRTASFPCTLLLTLLLWATSFTLATLATLKTSKSHLCLPMSSLIAREGKAILSLYVVDFTFCVAVVSVSYIMIAQTLRKNAHVRKCPPVITVDASRPQPFMGASGKGGGDPIQCTMPALYRNQNYNKLQHVQTHGYTKSPNQLPTPVASRLQLVSAVNLSTAKDSKAVVTCVIIVLSVLVCCLPLGISLVQVVLSSNGSFILYQFELFGFTLIFFKSGLNPFIYSRNSAGLRRKVLWCLQYIGLSFFCCKQKTRLRAMGKGNLEVNRNKSSHHETNSAYMLSPKPQKKFVDQACGPSHSKESVVSPRMSAGQQHYGQSSSTPINTRIEPYYSIYNSSPSQEESIPHNLQPVNSFGFATSYIAMHYHTTNDLMQEYDSTSAKQIPVPSV", "length": 540, "header": "tr|A0A287AG85-1|A0A287AG85_PIG Isoform 1 of G protein-coupled receptor 75 OS=Sus scrofa OX=9823 GN=GPR75 PE=4 SV=1 CANONICAL=A0A287AG85-1" }, "locus": { "chromosome": "3", "start_pos": 87347598, "end_pos": 87345979, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048891.1", "url": "https://www.ensembl.org/id/ENSSSCT00000048891.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042911.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042911.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG85", "url": "https://www.uniprot.org/uniprotkb/A0A287AG85" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517153", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517153", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IPI9-1", "protein_name": "Probable G-protein coupled receptor 75", "gene_name": "gpr75", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MCTMNSTAWPLDLAEFAKPRGFNSSQSQSASAGGWALIHTATLASCSLLLVLIFCLGSYGNLVVFLSFFDPAFRKFRTNFDFMILNLSFCDLFICCVTAPMFALVLFLDAGDNNGGVSKGFCFAFHLTSSGFIIMSLETVAVIALHRLRMVLGQQPNRTASFPCTLALTALLWTSSFTLAALVTLRAYPRSSGPCLPHFGLTGNKAKVVLYVYIADFAFCVGVVSISYLMIAQALRKNAQVRKCPIITVDATRPPASHPPLIAAGFEGMQCTVQVPSLYRNQTYNKLQHVQTHSFTRRTNQPLVPGAATGATCCQLVTSVNLATAKDSKAVVTCVVIVISVLLCCLPLGISLAQDMVSPESSFVHYQFELCGFALIFLKSGINPFVYSRNSAGLRRRVLCCLQWLTLGFLCCKHKTRLHAMGKGSLEVNRNKSSHHETNSAYMLSPKPQRRLVDQACGPSHSRDSMPSPCATAGRKPRPPSTSTPINTRIEPYYSIYNSSPSAGPSSPNSLQPVNSQTTPFAKSYVAMHYHIHQETLQDFDSTSAHQIPIPSV", "length": 553 }, "evidence": [ { "id": "A0A287AG85", "url": "https://omabrowser.org/oma/group/A0A287AG85/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0ZB45-1", "protein_name": "G protein-coupled receptor 75", "gene_name": "GPR75", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNASGRLPAGGEEEPPSAALLPLGGNGSAAAGLREGTHTATLAACASLLALVFCLGSYGNLIVFLSFFDPALRKFRTNFDFMILNLSFCDLFICGVAAPMFAFVLFFDSARGVPGAFCFTFHLTSSGFIIMSLKTVAVIALHRLRMVLGKQPHRAAPFPCTLLLTLLLWATSFTLATMATLRTHGSRLCLPMSSFARGDGKVILYLYVTDFICCVAVVSVSYVMIAQALRRNAQVRKCPPAVAVDASRPQPFVGPTAASAGQSALPALYRNQGSGKLQHSQAHGYTTHLGQPPAASRLQLVSAVNLSTTKDSRAVVTCVIIVLSVLVCCLPLGISLVQDMLSGSGGFVLYQFELCGFTLIFFKSGLNPFIYSRNSAGLRRRALWCLQYLSLVFFCCKQKTRLQAMGKGSLEVNRNKSSHHETNSAYMLSPKPQKKFVDQACGPSHSKESVLSPKASYGHQHYGQSTSTPMNTRIEPYYSIYNSSPSQEASTPNSLQPVNSTFGFTKSYIAMHYHTTTDLVRDYDSTSAKPIPVPSV", "length": 536 }, "evidence": [ { "id": "A0A287AG85", "url": "https://omabrowser.org/oma/group/A0A287AG85/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3Z826-1", "protein_name": "G protein-coupled receptor 75", "gene_name": "Gpr75", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNSSAPLQNVPNATLLYTPPLQGGNNTSLQEGLRDFIHTATLVTCTVLLAIIFCLGSYGNFIVFLSFFDPAFRKFRTNFDFMILNLSFCDLFICGATAPMFTFVLFFSSARSIPDSFCFTFHLTSSGFIIMSLKMVAVIALHRLRMVMGKQPNCTASFSCILLLTLLLWATSFTLATLATLRTSKSHLCLPMSSLMDGEGKAILSLYVVDFTFCVAVVSVSYIMIAQTLRKNAQVKKCPPVITVDASRPQPFMGASVKGNGDPIQCTMPALYRNQNYNKLQHNQTHGYTKNANQMPIPSASRLQLVSAVNLSTAKDSKAVVTCMVIVLSVLVCCLPLGISLLQVVLSDSGSFILYQFELFGFTLIFFKSGLNPFIYSRNSAGLRRKVLWCLRYTGLGFLCCKQKTRLRAMGKGNLEINRNKSSHHETNSAYMLSPKPQKKFVDQACGPSHSKESVASPKVSAGHHPCGQSSSTPINTRIEPYYSIYNSSPSQQESSPANLQPVNSFGFASSYIAMHYYTTNDLMQDYDSTSAKQIPIPSV", "length": 540 }, "evidence": [ { "id": "A0A287AG85", "url": "https://omabrowser.org/oma/group/A0A287AG85/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MG76-1", "protein_name": "G protein-coupled receptor 75", "gene_name": "GPR75", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNSTGHLQDVPNTTLLHVPHAQGGNSTSIQEGLQEPVHTATLVTCTFLLAVIFCLGSYGNFIVFLSFFDPAFRKFRTNFDFMILNLSFCDLFICGVTAPMFTFVLFFSSASGIPDTFCFTFHLTSSGFIIMSLKTVAVIALHRLRMVLGKQPNRTASFPCTLLLTLLLWTTSFTLATLATLKTSKSHLCLPMSSLIAGEGKAILSLYVVDFTFCVAVVFVSYVMIAQTLRKNAQVRKCPAVITVDASRPQPFMGAPVKGGGEPIQCTMPALYRNQNYNKLQHVQTHGYTKSPNQLPTPAASRLQLVSAVNLSTAQDSRAVVTCVIIVLSVLVCCLPLGISLVQVVLSSNGSFILYQFELLGFTLIFLKSGLNPFIYSRNSAGLRRKVLWCLQYIGLGFFCCKQKTRLRAMGKGNLEVNRNKSSHHETNSAYMLSPKPQKKFVDQACGPSHSKESVVSPKMSAGHQHYGQSSSTPINTRIEPYYSIYNSSPSQEESIPHNLQPVNSFGFANSYIAMHYHTTNDLMQEYDSTSAKQIPVPSV", "length": 540 }, "evidence": [ { "id": "A0A287AG85", "url": "https://omabrowser.org/oma/group/A0A287AG85/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O95800-1", "protein_name": "Probable G protein-coupled receptor 75", "gene_name": "GPR75", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNSTGHLQDAPNATSLHVPHSQEGNSTSLQEGLQDLIHTATLVTCTFLLAVIFCLGSYGNFIVFLSFFDPAFRKFRTNFDFMILNLSFCDLFICGVTAPMFTFVLFFSSASSIPDAFCFTFHLTSSGFIIMSLKTVAVIALHRLRMVLGKQPNRTASFPCTVLLTLLLWATSFTLATLATLKTSKSHLCLPMSSLIAGKGKAILSLYVVDFTFCVAVVSVSYIMIAQTLRKNAQVRKCPPVITVDASRPQPFMGVPVQGGGDPIQCAMPALYRNQNYNKLQHVQTRGYTKSPNQLVTPAASRLQLVSAINLSTAKDSKAVVTCVIIVLSVLVCCLPLGISLVQVVLSSNGSFILYQFELFGFTLIFFKSGLNPFIYSRNSAGLRRKVLWCLQYIGLGFFCCKQKTRLRAMGKGNLEVNRNKSSHHETNSAYMLSPKPQKKFVDQACGPSHSKESMVSPKISAGHQHCGQSSSTPINTRIEPYYSIYNSSPSQEESSPCNLQPVNSFGFANSYIAMHYHTTNDLVQEYDSTSAKQIPVPSV", "length": 540 }, "evidence": [ { "id": "A0A287AG85", "url": "https://omabrowser.org/oma/group/A0A287AG85/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6X632-1", "protein_name": "Probable G protein-coupled receptor 75", "gene_name": "Gpr75", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSAPLQNVPNATLLNMPPLHGGNSTSLQEGLRDFIHTATLVTCTFLLAIIFCLGSYGNFIVFLSFFDPSFRKFRTNFDFMILNLSFCDLFICGVTAPMFTFVLFFSSASSIPDSFCFTFHLTSSGFVIMSLKMVAVIALHRLRMVMGKQPNCTASFSCILLLTLLLWATSFTLATLATLRTNKSHLCLPMSSLMDGEGKAILSLYVVDFTFCVAVVSVSYIMIAQTLRKNAQVKKCPPVITVDASRPQPFMGASVKGNGDPIQCTMPALYRNQNYNKLQHSQTHGYTKNINQMPIPSASRLQLVSAINFSTAKDSKAVVTCVVIVLSVLVCCLPLGISLVQMVLSDNGSFILYQFELFGFTLIFFKSGLNPFIYSRNSAGLRRKVLWCLRYTGLGFLCCKQKTRLRAMGKGNLEINRNKSSHHETNSAYMLSPKPQRKFVDQACGPSHSKESAASPKVSAGHQPCGQSSSTPINTRIEPYYSIYNSSPSQQESGPANLPPVNSFGFASSYIAMHYYTTNDLMQEYDSTSAKQIPIPSV", "length": 540 }, "evidence": [ { "id": "A0A287AG85", "url": "https://omabrowser.org/oma/group/A0A287AG85/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG85", "url": "https://www.uniprot.org/uniprotkb/A0A287AG85" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG85", "url": "https://www.uniprot.org/uniprotkb/A0A287AG85" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "C-C chemokine receptor activity", "id": "GO:0016493", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016493", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG85", "url": "https://www.uniprot.org/uniprotkb/A0A287AG85" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 153, "end_pos": 155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 25, "end_pos": 27, 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1 profile", "eco_id": "ECO_0000259", "start_pos": 59, "end_pos": 376, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 153, "end_pos": 155 }, { "start_pos": 25, "end_pos": 27 }, { "start_pos": 2, "end_pos": 4 }, { "start_pos": 310, "end_pos": 312 }, { "start_pos": 349, "end_pos": 351 }, { "start_pos": 420, "end_pos": 422 }, { "start_pos": 487, "end_pos": 489 }, { "start_pos": 85, "end_pos": 87 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"A0A287AGA8_PIG", "mass": { "chemical_mass": 9214.0, "monoisotopic_mass": 9214.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A287AGA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGA8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AGA8", "url": "https://www.uniprot.org/uniprotkb/A0A287AGA8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287AGA8", "locus": {} } ], "crossref": [ { "id": "A0A287AGA8", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AGA8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035208", "url": 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Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGA8", "url": "https://www.uniprot.org/uniprotkb/A0A287AGA8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AGA8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 77, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": 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"length": 1236, "header": "tr|A0A287AGB7-1|A0A287AGB7_PIG Isoform 1 of Cilia and flagella associated protein 61 OS=Sus scrofa OX=9823 GN=CFAP61 PE=4 SV=2 CANONICAL=A0A287AGB7-1" }, "locus": { "chromosome": "17", "start_pos": 28372272, "end_pos": 28116481, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047663.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047663.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042898.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042898.2" } ] } }, { "isoform_ac": "A0A5G2R030-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGB7/entry#A0A5G2R030-1", "sequence": { "sequence": "MSVLTSPRGKVEVVHCRRTESQDIYCIKNLIRKFTQKLFGSLNIIYLLEKANLAITLHNDHEEIMAQATFLDYPNWNVTKQDDWVSVFQELDSEIPCTPLNTLFMHLFVAVDEYSVGCCKEIIRTVFKAVPDLHFIFLIVPSYMSLGSTLITVFNQVGNIPSLVYDEDFTVHVCHRHSHYPQLYIRKARVEDHDDLMPIFLHHDTILKETYGEYFLAELIEAQDEENHAVVCEVEGVAVGFMSLCSRVNLQLLHECFDLGPFHGLCTPHPSDVLEPSPELSAQGIPDTELRSSSQDSQKIVKELRETASMEAKESTQGKVTEEAPKEDALAPVQSESSSEAEDTEQLSQDYSTDSRYSVSNTSSASISLPKETSSFRPIYRGASAAFCIQLFCIDEKYEARSLDFMNFVFSLFPDKDFCIISLPHLTPEFVLVQNFVKIVPFNNCTLDQDLYVFHRAGLLKSTSLGRGPE", "length": 470, "header": "tr|A0A5G2R030-1|A0A287AGB7_PIG Computationally mapped isoform of Cilia and flagella associated protein 61 OS=Sus scrofa OX=9823 GN=CFAP61 PE=4 SV=2 CANONICAL=A0A287AGB7-1" }, "locus": { "chromosome": "17", "start_pos": 28203292, "end_pos": 28116481, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078635.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078635.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069745.2", "url": 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AGK8-1", "uniprot_ac": "A0A287AGK8", "uniprot_id": "A0A287AGK8_PIG", "mass": { "chemical_mass": 80246.0, "monoisotopic_mass": 80246.0 }, "refseq": { "ac": "XP_020939232", "name": "Usher syndrome type-1C protein-binding protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939232" }, "gene_names": [ { "name": "USHBP1", "type": "recommended", "evidence": [ { "id": "A0A287AGK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGK8" } ] }, { "name": "USHBP1", "type": "synonym", "evidence": [ { "id": "XP_020939232", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939232" } ] } ], "protein_names": [ { "name": "USH1 protein network component harmonin binding protein 1", "type": "synonym", "evidence": [ { "id": "A0A287AGK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGK8/entry#names_and_taxonomy" } ] }, { "name": "Usher syndrome type-1C protein-binding protein 1", "type": "synonym", "evidence": [ { "id": "XP_020939232", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939232" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AGK8", "url": "https://www.uniprot.org/uniprotkb/A0A287AGK8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "USHBP1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGK8", "locus": { "chromosome": "2", "start_pos": 60422554, "end_pos": 60411629, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036575", "url": "https://www.ensembl.org/id/ENSSSCG00000036575" } ] } } ], "crossref": [ { "id": "ENSSSCG00000036575", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036575", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100620693", "url": "https://www.ncbi.nlm.nih.gov/gene/100620693", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620693", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620693", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RELCKAH", "url": "https://omabrowser.org/oma/group/RELCKAH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AGK8", "url": "https://www.orthodb.org/?gene=A0A287AGK8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23347", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23347", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23347:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23347:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10506", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10506", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020939232", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939232", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AGK8", "url": "https://www.uniprot.org/uniprotkb/A0A287AGK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AGK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGK8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSITQKKLRLAFTLSWDQVVILGGEEDSEDTDFWITMSARATRPRSRRGRHALPGELDPVAESSEEAEAASGSSHLGPVPSQDSCKPELLGHEVEAKAKSLESRPDKEVDGDSHGGPALAPERPHEPAEEARHAPEAAPRERETSPSEPGAPDVFQTLQHALSSLEAAAAAWRHRPPSCAGPMEAKDRSEGGPMPGLEQEGAGSCQREAARLAERNTWLRLALGSREDELIRTQSSLKAFQAEKERLQREVQELQDSLLRLEPFSSPSGDQAGGSRSGSSSSGADRETWDTQDPFSPAHPLLRRLQSDSSTQMLEPLAPEMHIVEAQMEQLRGNIEKLKCFNRLLSAVLQEYKGRCEGLSMQLGQLEAEATALHLALQYSEHCEEAYGALLTLREADSRAGEKALTSDLEAAEKEAQRLLMQEKAAMDGGTLQAPHPSREGNSVDKPTLQEVATQLQGYVQRLQERRALVKIPPEPGPTSAPTSTVPHAEAMVQAILGTQPGPSLPRLEKTQIQQELAATRETLADLTLRLQLVRREKRALELREAALRAQVPAHVLLLEQLRWERAQLQTGEANSSGEDSSGGATSGEEEWSQSLPAVPSGSRGIDGGQMGKVQDPEELAQELSASLTRALGLREQLQTLWEELEEVAQKGRARRAQSTELNSDLCQAHSVLVLAFRGAHRKQEEQRRKLEQQVALMETRQAEELAALEATARALGRARRPCHPPRPGETFL", "length": 733, "header": "tr|A0A287AGK8-1|A0A287AGK8_PIG Isoform 1 of USH1 protein network component harmonin binding protein 1 OS=Sus scrofa OX=9823 GN=USHBP1 PE=4 SV=1 CANONICAL=A0A287AGK8-1" }, "isoforms": [ { "isoform_ac": "A0A287AGK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGK8/entry#A0A287AGK8-1", "sequence": { "sequence": "MSITQKKLRLAFTLSWDQVVILGGEEDSEDTDFWITMSARATRPRSRRGRHALPGELDPVAESSEEAEAASGSSHLGPVPSQDSCKPELLGHEVEAKAKSLESRPDKEVDGDSHGGPALAPERPHEPAEEARHAPEAAPRERETSPSEPGAPDVFQTLQHALSSLEAAAAAWRHRPPSCAGPMEAKDRSEGGPMPGLEQEGAGSCQREAARLAERNTWLRLALGSREDELIRTQSSLKAFQAEKERLQREVQELQDSLLRLEPFSSPSGDQAGGSRSGSSSSGADRETWDTQDPFSPAHPLLRRLQSDSSTQMLEPLAPEMHIVEAQMEQLRGNIEKLKCFNRLLSAVLQEYKGRCEGLSMQLGQLEAEATALHLALQYSEHCEEAYGALLTLREADSRAGEKALTSDLEAAEKEAQRLLMQEKAAMDGGTLQAPHPSREGNSVDKPTLQEVATQLQGYVQRLQERRALVKIPPEPGPTSAPTSTVPHAEAMVQAILGTQPGPSLPRLEKTQIQQELAATRETLADLTLRLQLVRREKRALELREAALRAQVPAHVLLLEQLRWERAQLQTGEANSSGEDSSGGATSGEEEWSQSLPAVPSGSRGIDGGQMGKVQDPEELAQELSASLTRALGLREQLQTLWEELEEVAQKGRARRAQSTELNSDLCQAHSVLVLAFRGAHRKQEEQRRKLEQQVALMETRQAEELAALEATARALGRARRPCHPPRPGETFL", "length": 733, "header": "tr|A0A287AGK8-1|A0A287AGK8_PIG Isoform 1 of USH1 protein network component harmonin binding protein 1 OS=Sus scrofa OX=9823 GN=USHBP1 PE=4 SV=1 CANONICAL=A0A287AGK8-1" }, "locus": { "chromosome": "2", "start_pos": 60422501, "end_pos": 60411995, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056339.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056339.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043107.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043107.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 479, "start_aa": "Thr", "end_pos": 479, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr479", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGK8", "url": "https://www.uniprot.org/uniprotkb/A0A287AGK8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620693", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620693", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q3T1I3-1", "protein_name": "Harmonin-binding protein USHBP1", "gene_name": "Ushbp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSARATRPRSRRGRHPLPGELDPVAESSEEVDTTNGSFETKPELLQEHLGPSLQGPGNRIKEDCDVGSHGVLPLSPEERREPEVEAHQALQEAPLDTGPAEITAPNVYETLKCRLSSLEAVVAAWRRHSLSFSKPVEAEDRDPGAPGSFGNEEEASGPGQQEAAHFIERNAWLRLALGTREEELARTQASLQDAQAENETLQRQVQELEDSLMQLEASPPPSMLRAGRRNSNSSSSGAERRPWAPQDSPMAHPFLQRLRSDSSTQSFGCLSTQRPSPEMYLMEDQMGQLQGNIEKLKCFNRLLLAVLQGYKGRCESLSIKLGKREAEATALHLALQYSKDCEEVYEVLLALKTAGLGAGVGATNGDLQAAEKEASRLLVKKEVAMDVKTPQPSPEGSSVDKPTPEELAAQLHGYVQHLRERWALLKIPPVLDPATAPKPTMPHAEATVQTILEIQPGPTLPQLEKSQIQQDLAATRDGLADLVLRLQLAQREKRGLELREAALRAQGPALRLLLQQLRWEQAHLMGDGSSGGSSEDPSSEEEAGEDRQQHYQGPPALLGGQMGKVWDSETVSQELSASLTRAVDLRAQLQSLRRQLEQMAQKGRTRGAQSAELNRELCKAHSALALAFREAHRKQEEQCRKLEQQMARMQAQQAEELAVLTATARALGDPGAPQPVQTFL", "length": 680 }, "evidence": [ { "id": "A0A287AGK8", "url": "https://omabrowser.org/oma/group/A0A287AGK8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N6Y0-1", "protein_name": "Harmonin-binding protein USHBP1", "gene_name": "USHBP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSARATRPRSRRGRHAPPGELDPVAESSEEVEAASGSSKPSFAPPPVSSGLEQLGPMEEVSGQGLGSRTDKKMDGGSGRELASAPEVPHKPAVEAHQAPEAALQYKETVPPGNGAPDVFQTLQHTLSSLEAAAAAWRHQPPSHSGPMEFEGTSEGGAGSLGKQEGAGSCQREAARLAERNAWLRLALSSREDELVRTQASLEAIRAEKETLQKEVQELQDSLLRLEPCPHLSHNQAGGSGSGSSSSEADREPWETQDSFSLAHPLLRRLRSHSSTQILGSLPNQPLSPEMHIMEAQMEQLRGSIEKLKCFNRLLSAVLQGYKGRCEGLSMQLGQREAEATALHLALQYSEHCEEAYRVLLALREADSGAGDEAPMSDLQAAEKEAWRLLAQEEAAMDAGAQQNPQPSPEGSSVDKPTPQEVAFQLRSYVQRLQERRSLMKILSEPGPTLAPMPTVPRAEAMVQAILGTQAGPALPRLEKTQIQQDLVAAREALADLMLRLQLVRREKRGLELREAALRALGPAHVLLLEQLRWERAELQAGGANSSGGHSSGGGSSGDEEEWYQGLPAVPGGTSGIDGGQVGRAWDPEKLAQELAASLTRTLDLQEQLQSLRRELEQVAQKGRARRSQSAELNRDLCKAHSALVLAFRGAHRKQEEQRRKLEQQMALMEAQQAEEVAVLEATARALGKPRPPLPPPQLGDTFL", "length": 703 }, "evidence": [ { "id": "A0A287AGK8", "url": "https://omabrowser.org/oma/group/A0A287AGK8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R370-1", "protein_name": "Harmonin-binding protein USHBP1", "gene_name": "Ushbp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSARATRPRSRRGRHPLPGELDPVAESSEEVDANNGRFETKPELHQEYLGPGLQSPRNWIKEGCDVGSHAVLSLSPEEQCEPEVEAHQVLQEAPLDSGPAEISVPSVYETLQCRLSSLEAVVAALRHHSLSFPKSVEAEDRDQGAPGPFGDEKEDAGPGQQEAARLIERNAWLRLALCNREDELACTQASLQDAQAEKETLQRQVQELEDSLMQMEASPPTPILRAGRRNSNSSTSGAERRPWVPQDSSMAHPFLQRLRSDSSTQSFGCLSTQHPAPETYLMEDQMGQLQGSIEKLKCFNRLLLAVLQGYKGRCESLSIKLAKREAEATALRLALQYSEDCEEVYEVLLALKMAGLGTGVGTTKGDLQAAEKEASRLLMKKEATMEVETPQPSSEGSGVDKPTPEELASQLHGYVQHLRERWALVKIPEELGPVTAPKATMPHAEATVQAILEIQPGPTLPHLEKSQIQQDLAATRDRLADLVLRLQLTQREKRGLELREAALRAQGPAHQLLLQQLRWERAHFAGDGSSGGSSEDPSSEEEAGEDRQQHYQGPLALLDGQMGKVWDSENVSQELSASLARAIDLRAQLQSLRQQLEQVTQKGRTRRVQSAELSRELCKAHSALALAFRGAHRKQEEQRLKLEQQVARLQAQQAEELAVLTATARALGKPGAPQPAQTFL", "length": 680 }, "evidence": [ { "id": "A0A287AGK8", "url": "https://omabrowser.org/oma/group/A0A287AGK8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "PDZ domain binding", "id": "GO:0030165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030165", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGK8", "url": "https://www.uniprot.org/uniprotkb/A0A287AGK8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 575, "end_pos": 577, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AGK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGK8" }, { "id": "PF10506", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10506" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Harmonin-binding protein USHBP1 PDZ-binding", "eco_id": "ECO_0000259", "start_pos": 330, "end_pos": 393, "start_aa": "Gln", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 479 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 575, "end_pos": 577 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AGL1-1", "uniprot_ac": "A0A287AGL1", "uniprot_id": "A0A287AGL1_PIG", "mass": { "chemical_mass": 401307.0, "monoisotopic_mass": 401307.0 }, "refseq": {}, "gene_names": [ { "name": "USP34", "type": "recommended", "evidence": [ { "id": "A0A287AGL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1" } ] } ], "protein_names": [ { "name": "Ubiquitin carboxyl-terminal hydrolase 34", "type": "recommended", "evidence": [ { "id": "A0A287AGL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1/entry#names_and_taxonomy" } ] }, { "name": "3.4.19.12", "type": "synonym", "evidence": [ { "id": "A0A287AGL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1/entry#names_and_taxonomy" } ] }, { "name": "Deubiquitinating enzyme 34", "type": "synonym", "evidence": [ { "id": "A0A287AGL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1/entry#names_and_taxonomy" } ] }, { "name": "Ubiquitin thioesterase 34", "type": "synonym", "evidence": [ { "id": "A0A287AGL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1/entry#names_and_taxonomy" } ] }, { "name": "Ubiquitin-specific-processing protease 34", "type": "synonym", "evidence": [ { "id": "A0A287AGL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Ubiquitin hydrolase that can remove conjugated ubiquitin from AXIN1 and AXIN2, thereby acting as a regulator of Wnt signaling pathway. Acts as an activator of the Wnt signaling pathway downstream of the beta-catenin destruction complex by deubiquitinating and stabilizing AXIN1 and AXIN2, leading to promote nuclear accumulation of AXIN1 and AXIN2 and positively regulate beta-catenin (CTNBB1)-mediated transcription. Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1#function" }, { "database": "UniProtKB", "id": "ARBA00053751", "url": "https://www.uniprot.org/uniprotkb/ARBA00053751#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AGL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "USP34", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1", "locus": { "chromosome": "3", "start_pos": 80587761, "end_pos": 80370691, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008382", "url": "https://www.ensembl.org/id/ENSSSCG00000008382" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008382", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008382", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02659", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02659", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018200", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018200", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021905", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021905", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24006", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24006", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24006:SF827", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24006:SF827", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00443", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00443", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12030", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12030", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AGL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AGL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "ICFHLSDIEGGDGLQLRKEHTLKIFAYINSWTQRQCLCCFKEYKHLEIFNQVVCALINLVIAQVQVLRDQLCKHCTTINIDSTWQDESNQAEEQLNIERECNEGSTERQKSVEKKSNSTKICNLTEEESSKGSDPFSLWSTDEKEKLLLCVAKIFQIQFPLYTAYKHNTHPTIEDISTQESNILGAFCDMNDVEVPLHLLRYVCLFCGKNGLSLMKDCFEYGTPETLPFLIAHAFITVVSNIRIWLHIPAVMQHIIPFRTYVIRYLCKLSDQELRQSAARNMADLMWSTVKEPLDTTLCFDKESLDLAFKYFMSPTLTMRLAGLSQITNQLHTFNDVCNNESLVSDTETSIAKELADWLISNNVVEHIFGPNLHIEIIKQCQVILNFLAAEGRLSTQHIDCIWAAAQLKHCSRYIHDLFPSLIKNLDPVPLRHLLNLVSALEPGVHTEQTLYLASMLIKALWNNALAAKAQLSKQSSFASLLNTNLPIGNKKEEEELRRAAPSPWSPAASPQSSDNSDTHQSGGSDIEMDEQLINRTKHVQQRLSDTEESMQGSSDETANSGEDGSSGPGSSSGHSDGSSNEVNSSHASQSAGSPGSEVQSEDIADIEALKEEDEDDDHGHNPPKSSCGTDLRNRKLESQAGICLGDSQGPSERSGTSNGTGKDLVFNTESLPSVDNRIRMLDACSHSEDPEHDISGEMNAAHIAQASQESCITRTGDFLGETIGNELFNCRQFIGPQHHHHHHHHHHHHHDGHMVDDMLSADDVSCSSSQVSAKSEKNMADFDGEESGCEEELVQINSHAELTSHLQQHLPNLASIYHEHLSQGPAVHKHQFNSNAVTDINLDNVCKKGNTLLWDIVQDDDAVNLSEGLINEAEKLLCSLVCWFTDRQIRMRFIEGCLENLGNNRSVVISLRLLPKLFGTFQQFGSSYDTHWITMWAEKELNMMKLFFDNLVYYIQGVREGRQKHALYSHSAEVQVRLQFLTCVFSTLGSPDHFRLSLEQVDILWHCLVEDSECYDDALHWFLNQVRSKDQHAMGMETYKHLFLEKMPQLKPETISMTGLNLFQHLCNLARLATSAYDGGSNSELCGMDQFWGIALRAQSGDVSRAAIQYINSYYINGKTGLEKEQEFISKCMESLMIASSSLEQESHSSLTVIERGLLMLKTHLEAFRRRFAYHLRQWQIEGTGISSHLKALSDKQSLPLRVVCQPAGLPDKMTIEMYPSDQVADLRAEVTHWYENLQKEQINQQAQLQEFGQSSRKGEFPGGLMGPVRMISSGHELTTDYDEKALHELGFKDMQMVFVSLGAPRRERKGEGVQLPASCLPPPQKDNIPMLLLLQEPHLTTLFDLLEMLASFKPPSGKVAVEDSESLRCEELHLHAENLSRRVWELLMLLPTCPNMLMAFQNISDEQNNDAPNWKELLKIKSAHKLLYALEIIEALGKPNRRIRRESTGSYSDLYPDSDDSSEDQVENSKNSWSCKFVAAGGLQQLLEIFNSGILEPKEQESWTVWQLDCLACLLKLICQFAVDPSDLDLAYHDVFAWSGIAESHRKRTWPGKSRKAAGDHAKGLHIPRLTEVFLVLVQGTSLIQRLMSVAYTYDNLAPRVLKAQSDHRSRHEVSHYSMWLLVSWAHCCSLVKSSLADSDHLQDWLKKLTLLIPETAVRHESCNGLYKLSLSGLDGGDSINRSFLLLAASTLLKFLPDAQALKPIRIDDYEEEPMLKPGCKEYFWLLCKLIDNIHIKDASQTTLLDLDALARHLADCIRSREILDHQDGNIEDDGLTGLLRLATSVIKHKPPFKFSREGQEFLRDIFNLLFLLPSLKDRQQPKCKSHSSRAAAYDLLVEMVKGSVENYRLIHNWVMAQHMQSHAPYKWDYWPHEDVRAECRFVGLTNLGATCYLASTIQQLYMIPEARQAVFTAKYSEDMKHKTTLLELQKMFTYLMESECKAYNPRPFCKTYTMDKQPLNTGEQKDMTEFFTDLITKIEEMSPELKNTVKSLFGGVITNNVVSLDCEHVSQTAEEFYTVRCQVADMKNIYESLDEVTIKDTLEGDNMYTCSHCGKKVRAEKRACFKKLPRILSFNTMRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSDRKEGFKEVGDHSKDTESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQLASECFGGEMTTKTYDSVTDKFMDFSFEKTHSAYMLFYKRMEPEEENGKEYKFDVSSELLEWIWHDNMQFLQDKNIFEHTYFGFMWQLCSCIPSTLPDPKAVSLMTAKLSTSFVLETFIHSKEKPTMLQWIELLTKQFNNSQAACEWFLDRMADDDWWPMQILIKCPNQIVRQMFQRLCIHVIQRLRPVHAHLYLQPGMEDGSDDMDASVEDIGGRSCVTRFVRTLLLIMEHGVKPHSKHLTEYFAFLYEFAKMGEEESQFLLSLQAISTMVHFYMGTKGPENPQVEVLSEEEGEEEEEEEDILSLAEEKYRPAALEKMIALVALLVEQSRSERHLTLSQTDMAALTGGKGFPFLFQHIRDGINIRQTCNLIFSLCRYNNRLAEHAANPFFKLLTMLMEFAGGPPGMPPFASYILQRIWEVIEYNPSQCLDWLAVQTPRNKLAHSWVLQNMENWVERFLLAHNYPRVRTSAAYLLVSLIPSNSFRQMFRSTRSLHIPTRDLPLSPDTTVVLHQVYNVLLGLLSRAKLYVDAAVHGTTKLVPYFSFMTYCLISKTEKLMFSTYFMDLWNLFQPKLSEPAIATNHNKQALLSFWYNVCADCPENIRLIVQNPVVTKNIAFNYILADHDDQDVVLFNRGMLPAYYGILRLCCEQSPAFTRQLASHQNIQWAFKNLTPHASQYPGAVEELFNLMQLFIAQRPDMREEELEDIKQFKKTTISCYLRCLDGRSCWTTLISAFRILLESDEDRLLVVFNRGLILMTESFNTLHMMYHEATACHVTGDLVELLSIFLSVLKSTRPYLQRKDVKQALIQWQERIEFAHKLLTLLNSYSPPELRNACIDVLKELVLLSPHDFLHTLVPFLQHNHCTYHHSNIPMSLGPYFPCRENIKLIGGKSNIRPPRPELNMCLLPTMVETSKGKDDVYDRMLLDYFFSYHQFIHLLCRVAINCEKFTETLVKLSVLVAYEGLPLHLALFPKLWTELCQTQSAMSKNCIKLLCEDPVFAEYIKCILMDERTFLNNNIVYTFMTHFLLKVQGQVFSEANCANLISTLITNLINQYQNLQSDFTNRVEISKASASLNGDLRALALLLSVHTPKQLNPALIPTLQELLSKCRTCLQQRNSLQEQEAKERKTKDDEGATPIKRRRVSSDEEHTVESCISEMKTETREVLTPTSTSDNETRDSSIIDPGTEQDLPSPENSSVKEYRMEVPSSFSEDTSNVRSRHVEEQSNSGRFEDCKEFKDLHCSKDSHLAGEESEFPSTSLSAVLSDLADLRSCDSQALPSQDPEAALSLSCGHSRGLFSHMQQHDILDTLCRTIESTIHVVTRISGKGNQAAS", "length": 3522, "header": "tr|A0A287AGL1-1|A0A287AGL1_PIG Isoform 1 of Ubiquitin carboxyl-terminal hydrolase 34 OS=Sus scrofa OX=9823 GN=USP34 PE=3 SV=1 CANONICAL=A0A287AGL1-1" }, "isoforms": [ { "isoform_ac": "A0A287AGL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1/entry#A0A287AGL1-1", "sequence": { "sequence": "ICFHLSDIEGGDGLQLRKEHTLKIFAYINSWTQRQCLCCFKEYKHLEIFNQVVCALINLVIAQVQVLRDQLCKHCTTINIDSTWQDESNQAEEQLNIERECNEGSTERQKSVEKKSNSTKICNLTEEESSKGSDPFSLWSTDEKEKLLLCVAKIFQIQFPLYTAYKHNTHPTIEDISTQESNILGAFCDMNDVEVPLHLLRYVCLFCGKNGLSLMKDCFEYGTPETLPFLIAHAFITVVSNIRIWLHIPAVMQHIIPFRTYVIRYLCKLSDQELRQSAARNMADLMWSTVKEPLDTTLCFDKESLDLAFKYFMSPTLTMRLAGLSQITNQLHTFNDVCNNESLVSDTETSIAKELADWLISNNVVEHIFGPNLHIEIIKQCQVILNFLAAEGRLSTQHIDCIWAAAQLKHCSRYIHDLFPSLIKNLDPVPLRHLLNLVSALEPGVHTEQTLYLASMLIKALWNNALAAKAQLSKQSSFASLLNTNLPIGNKKEEEELRRAAPSPWSPAASPQSSDNSDTHQSGGSDIEMDEQLINRTKHVQQRLSDTEESMQGSSDETANSGEDGSSGPGSSSGHSDGSSNEVNSSHASQSAGSPGSEVQSEDIADIEALKEEDEDDDHGHNPPKSSCGTDLRNRKLESQAGICLGDSQGPSERSGTSNGTGKDLVFNTESLPSVDNRIRMLDACSHSEDPEHDISGEMNAAHIAQASQESCITRTGDFLGETIGNELFNCRQFIGPQHHHHHHHHHHHHHDGHMVDDMLSADDVSCSSSQVSAKSEKNMADFDGEESGCEEELVQINSHAELTSHLQQHLPNLASIYHEHLSQGPAVHKHQFNSNAVTDINLDNVCKKGNTLLWDIVQDDDAVNLSEGLINEAEKLLCSLVCWFTDRQIRMRFIEGCLENLGNNRSVVISLRLLPKLFGTFQQFGSSYDTHWITMWAEKELNMMKLFFDNLVYYIQGVREGRQKHALYSHSAEVQVRLQFLTCVFSTLGSPDHFRLSLEQVDILWHCLVEDSECYDDALHWFLNQVRSKDQHAMGMETYKHLFLEKMPQLKPETISMTGLNLFQHLCNLARLATSAYDGGSNSELCGMDQFWGIALRAQSGDVSRAAIQYINSYYINGKTGLEKEQEFISKCMESLMIASSSLEQESHSSLTVIERGLLMLKTHLEAFRRRFAYHLRQWQIEGTGISSHLKALSDKQSLPLRVVCQPAGLPDKMTIEMYPSDQVADLRAEVTHWYENLQKEQINQQAQLQEFGQSSRKGEFPGGLMGPVRMISSGHELTTDYDEKALHELGFKDMQMVFVSLGAPRRERKGEGVQLPASCLPPPQKDNIPMLLLLQEPHLTTLFDLLEMLASFKPPSGKVAVEDSESLRCEELHLHAENLSRRVWELLMLLPTCPNMLMAFQNISDEQNNDAPNWKELLKIKSAHKLLYALEIIEALGKPNRRIRRESTGSYSDLYPDSDDSSEDQVENSKNSWSCKFVAAGGLQQLLEIFNSGILEPKEQESWTVWQLDCLACLLKLICQFAVDPSDLDLAYHDVFAWSGIAESHRKRTWPGKSRKAAGDHAKGLHIPRLTEVFLVLVQGTSLIQRLMSVAYTYDNLAPRVLKAQSDHRSRHEVSHYSMWLLVSWAHCCSLVKSSLADSDHLQDWLKKLTLLIPETAVRHESCNGLYKLSLSGLDGGDSINRSFLLLAASTLLKFLPDAQALKPIRIDDYEEEPMLKPGCKEYFWLLCKLIDNIHIKDASQTTLLDLDALARHLADCIRSREILDHQDGNIEDDGLTGLLRLATSVIKHKPPFKFSREGQEFLRDIFNLLFLLPSLKDRQQPKCKSHSSRAAAYDLLVEMVKGSVENYRLIHNWVMAQHMQSHAPYKWDYWPHEDVRAECRFVGLTNLGATCYLASTIQQLYMIPEARQAVFTAKYSEDMKHKTTLLELQKMFTYLMESECKAYNPRPFCKTYTMDKQPLNTGEQKDMTEFFTDLITKIEEMSPELKNTVKSLFGGVITNNVVSLDCEHVSQTAEEFYTVRCQVADMKNIYESLDEVTIKDTLEGDNMYTCSHCGKKVRAEKRACFKKLPRILSFNTMRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSDRKEGFKEVGDHSKDTESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQLASECFGGEMTTKTYDSVTDKFMDFSFEKTHSAYMLFYKRMEPEEENGKEYKFDVSSELLEWIWHDNMQFLQDKNIFEHTYFGFMWQLCSCIPSTLPDPKAVSLMTAKLSTSFVLETFIHSKEKPTMLQWIELLTKQFNNSQAACEWFLDRMADDDWWPMQILIKCPNQIVRQMFQRLCIHVIQRLRPVHAHLYLQPGMEDGSDDMDASVEDIGGRSCVTRFVRTLLLIMEHGVKPHSKHLTEYFAFLYEFAKMGEEESQFLLSLQAISTMVHFYMGTKGPENPQVEVLSEEEGEEEEEEEDILSLAEEKYRPAALEKMIALVALLVEQSRSERHLTLSQTDMAALTGGKGFPFLFQHIRDGINIRQTCNLIFSLCRYNNRLAEHAANPFFKLLTMLMEFAGGPPGMPPFASYILQRIWEVIEYNPSQCLDWLAVQTPRNKLAHSWVLQNMENWVERFLLAHNYPRVRTSAAYLLVSLIPSNSFRQMFRSTRSLHIPTRDLPLSPDTTVVLHQVYNVLLGLLSRAKLYVDAAVHGTTKLVPYFSFMTYCLISKTEKLMFSTYFMDLWNLFQPKLSEPAIATNHNKQALLSFWYNVCADCPENIRLIVQNPVVTKNIAFNYILADHDDQDVVLFNRGMLPAYYGILRLCCEQSPAFTRQLASHQNIQWAFKNLTPHASQYPGAVEELFNLMQLFIAQRPDMREEELEDIKQFKKTTISCYLRCLDGRSCWTTLISAFRILLESDEDRLLVVFNRGLILMTESFNTLHMMYHEATACHVTGDLVELLSIFLSVLKSTRPYLQRKDVKQALIQWQERIEFAHKLLTLLNSYSPPELRNACIDVLKELVLLSPHDFLHTLVPFLQHNHCTYHHSNIPMSLGPYFPCRENIKLIGGKSNIRPPRPELNMCLLPTMVETSKGKDDVYDRMLLDYFFSYHQFIHLLCRVAINCEKFTETLVKLSVLVAYEGLPLHLALFPKLWTELCQTQSAMSKNCIKLLCEDPVFAEYIKCILMDERTFLNNNIVYTFMTHFLLKVQGQVFSEANCANLISTLITNLINQYQNLQSDFTNRVEISKASASLNGDLRALALLLSVHTPKQLNPALIPTLQELLSKCRTCLQQRNSLQEQEAKERKTKDDEGATPIKRRRVSSDEEHTVESCISEMKTETREVLTPTSTSDNETRDSSIIDPGTEQDLPSPENSSVKEYRMEVPSSFSEDTSNVRSRHVEEQSNSGRFEDCKEFKDLHCSKDSHLAGEESEFPSTSLSAVLSDLADLRSCDSQALPSQDPEAALSLSCGHSRGLFSHMQQHDILDTLCRTIESTIHVVTRISGKGNQAAS", "length": 3522, "header": "tr|A0A287AGL1-1|A0A287AGL1_PIG Isoform 1 of Ubiquitin carboxyl-terminal hydrolase 34 OS=Sus scrofa OX=9823 GN=USP34 PE=3 SV=1 CANONICAL=A0A287AGL1-1" }, "locus": { "chromosome": "3", "start_pos": 80587201, "end_pos": 80370691, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051906.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051906.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042991.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042991.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1" } ], "pmid": "" }, { "name": "regulation of protein stability", "id": "GO:0031647", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031647", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1" } ], "pmid": "" }, { "name": "positive regulation of canonical Wnt signaling pathway", "id": "GO:0090263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090263", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL1" } ], "pmid": "" }, { "name": "protein K48-linked deubiquitination", "id": 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retrotransposons. It contains two overlapping open reading frames, RF1 and RF2, and expresses two proteins: a shorter, gag-like protein (with a CCHC-type zinc finger domain) from RF1; and a longer, gag/pol-like fusion protein (with an additional aspartic protease motif) from RF1/RF2 by -1 translational frameshifting (-1 FS). While -1 FS has been observed in RNA viruses and transposons in both prokaryotes and eukaryotes, this gene represents the first example of -1 FS in a eukaryotic cellular gene. This gene is highly conserved across mammalian species and retains the heptanucleotide (GGGAAAC) and pseudoknot elements required for -1 FS. It is expressed in adult and embryonic tissues (most notably in placenta) and reported to have a role in cell proliferation, differentiation, apoptosis and cancer development. Knockout mice lacking this gene showed early embryonic lethality with placental defects, indicating the importance of this gene in embryonic development. Different isoforms resulting from alternatively spliced transcript variants, and use of non-AUG (CUG) translation initiation codon have been found for this gene. [provided by RefSeq, Oct 2014].", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103414" }, "gene_names": [ { "name": "PEG10", "type": "recommended", "evidence": [ { "id": "A0A287AGL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL8" } ] }, { "name": "PEG10", "type": "synonym", "evidence": [ { "id": "NP_001103414", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103414" } ] } ], "protein_names": [ { "name": "Paternally expressed 10", "type": "synonym", "evidence": [ { "id": "A0A287AGL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL8/entry#names_and_taxonomy" } ] }, { "name": "retrotransposon-derived protein PEG10 isoform 4", "type": "synonym", "evidence": [ { "id": "NP_001103414", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103414" } ] } ], "function": [ { "annotation": "A transition SNP was identified by microarray expression profiling and confirmed by pyrosequencing in Meishan and white composite swine breeds. Publication Status: Online-Only", "evidence": [ { "database": "RefSeq", "id": "NP_001103414", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103414" }, { "database": "PubMed", "id": "18510738", "url": "https://glygen.org/publication/PubMed/18510738" } ] }, { "annotation": "Gene is monoallelically expressed and may be imprinted in porcine placentas on days 75 and 90 of gestation.", "evidence": [ { "database": "RefSeq", "id": "NP_001103414", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103414" }, { "database": "PubMed", "id": "17660697", "url": "https://glygen.org/publication/PubMed/17660697" } ] }, { "annotation": "Polymorphisms in PEG10 and PPP1R9A were associated with fat deposition and carcass traits", "evidence": [ { "database": "RefSeq", "id": "NP_001103414", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103414" }, { "database": "PubMed", "id": "26995566", "url": "https://glygen.org/publication/PubMed/26995566" } ] }, { "annotation": "The expression patterns of PLAGL1 and PEG10 genes in two breeds of swine are reported.", "evidence": [ { "database": "RefSeq", "id": "NP_001103414", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103414" }, { "database": "PubMed", "id": "17178803", "url": "https://glygen.org/publication/PubMed/17178803" } ] }, { "annotation": "The imprinting status of PEG10 is conserved in swine as paternal expression was demonstrated by quantitative allelic sequencing of reciprocal crosses in fetal tissues of whole brain, carcass, liver and placentae.", "evidence": [ { "database": "RefSeq", "id": "NP_001103414", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103414" }, { "database": "PubMed", "id": "19571260", "url": "https://glygen.org/publication/PubMed/19571260" } ] }, { "annotation": "This is a paternally expressed imprinted gene that is thought to have been derived from the Ty3/Gypsy family of retrotransposons. It contains two overlapping open reading frames, RF1 and RF2, and expresses two proteins: a shorter, gag-like protein (with a CCHC-type zinc finger domain) from RF1; and a longer, gag/pol-like fusion protein (with an additional aspartic protease motif) from RF1/RF2 by -1 translational frameshifting (-1 FS). While -1 FS has been observed in RNA viruses and transposons in both prokaryotes and eukaryotes, this gene represents the first example of -1 FS in a eukaryotic cellular gene. This gene is highly conserved across mammalian species and retains the heptanucleotide (GGGAAAC) and pseudoknot elements required for -1 FS. It is expressed in adult and embryonic tissues (most notably in placenta) and reported to have a role in cell proliferation, differentiation, apoptosis and cancer development. Knockout mice lacking this gene showed early embryonic lethality with placental defects, indicating the importance of this gene in embryonic development. Different isoforms resulting from alternatively spliced transcript variants, and use of non-AUG (CUG) translation initiation codon have been found for this gene. [provided by RefSeq, Oct 2014].", "evidence": [ { "database": "RefSeq", "id": "NP_001103414", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103414" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AGL8", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PEG10", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL8", "locus": { "chromosome": "9", "start_pos": 74486979, "end_pos": 74474107, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036049", "url": "https://www.ensembl.org/id/ENSSSCG00000036049" } ] } } ], "crossref": [ { "id": "A0A287AGL8", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AGL8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036049", 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AGL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNKKLLKTKRRKGGRGGQEPGLHPHRSEATPGRSPPTPSLTLGPDCPPPPPPPPPNDPSSSNSSSPCGGQRGQYNPNLAERRRDDLSEEINNLREKVMKQSEENNNLQNQVQKLTEENTSLREQVEPAPEEEEDDIELCGAAAAAAPATPIEEECSEDLPEKFDGNPDALVPFMAQCQLFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERSHYLMHNYPAFMTEMKHVFEDPQRREAAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQAELSRLEVAKSLSALIGQCIHIERRLARAAAARKPRSPPRALVMPHVSNHHQVDPTEPVGGARMRLTQEEKERRRKLNLCLYCGNGGHYADNCPAKASKASPAGNSPAPL", "length": 403, "header": "tr|A0A287AGL8-1|A0A287AGL8_PIG Isoform 1 of Paternally expressed 10 OS=Sus scrofa OX=9823 GN=PEG10 PE=4 SV=1 CANONICAL=A0A287AGL8-1" }, "isoforms": [ { "isoform_ac": "A0A287AGL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGL8/entry#A0A287AGL8-1", "sequence": { "sequence": "MRNKKLLKTKRRKGGRGGQEPGLHPHRSEATPGRSPPTPSLTLGPDCPPPPPPPPPNDPSSSNSSSPCGGQRGQYNPNLAERRRDDLSEEINNLREKVMKQSEENNNLQNQVQKLTEENTSLREQVEPAPEEEEDDIELCGAAAAAAPATPIEEECSEDLPEKFDGNPDALVPFMAQCQLFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERSHYLMHNYPAFMTEMKHVFEDPQRREAAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQAELSRLEVAKSLSALIGQCIHIERRLARAAAARKPRSPPRALVMPHVSNHHQVDPTEPVGGARMRLTQEEKERRRKLNLCLYCGNGGHYADNCPAKASKASPAGNSPAPL", "length": 403, "header": "tr|A0A287AGL8-1|A0A287AGL8_PIG Isoform 1 of Paternally expressed 10 OS=Sus scrofa OX=9823 GN=PEG10 PE=4 SV=1 CANONICAL=A0A287AGL8-1" }, "locus": { "chromosome": "9", "start_pos": 74481843, "end_pos": 74474324, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061417.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061417.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043118.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043118.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 31, "start_aa": "Thr", "end_pos": 31, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr31", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 38, "start_aa": "Thr", "end_pos": 38, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr38", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Imprinted status of pleomorphic adenoma gene-like I and paternal expression gene 10 genes in pigs.", "journal": "Journal of animal science", "date": "2007-04", "authors": "Zhang F W, Cheng H C, Jiang C D, Deng C Y, Xiong Y Z, Li F E, Lei M G", "evidence": [ { "database": "RefSeq", "id": "NP_001103414", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103414" } ], "reference": [ { "type": "PubMed", "id": "17178803", "url": "https://glygen.org/publication/PubMed/17178803" } ] }, { "title": "Imprinting analyses of the porcine GATM and PEG10 genes in placentas on days 75 and 90 of gestation.", "journal": "Genes & genetic systems", "date": "2007-06", "authors": "Zhou Quan-Yong, Huang Jiang-Nan, Xiong Yuan-Zhu, Zhao Shu-Hong", "evidence": [ { "database": "RefSeq", "id": "NP_001103414", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103414" } ], "reference": [ { "type": "PubMed", "id": "17660697", "url": "https://glygen.org/publication/PubMed/17660697" } ] }, { "title": "Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays.", "journal": "BMC genomics", "date": "2008-05-29", "authors": "Bischoff Steve R, Tsai Shengdar, Hardison Nicholas E, York Abby M, Freking Brad A, Nonneman Dan, Rohrer Gary, Piedrahita Jorge A", "evidence": [ { "database": "RefSeq", "id": "NP_001103414", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103414" } ], "reference": [ { "type": "PubMed", "id": "18510738", "url": "https://glygen.org/publication/PubMed/18510738" } ] }, { "title": "Characterization of conserved and nonconserved imprinted genes in swine.", "journal": "Biology of reproduction", "date": "2009-11", "authors": "Bischoff Steve R, Tsai Shengdar, Hardison Nicholas, Motsinger-Reif Alison A, Freking Brad A, Nonneman Dan, Rohrer Gary, Piedrahita Jorge A", "evidence": [ { "database": "RefSeq", "id": 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"length": 1372, "header": "tr|A0A287AGS3-1|A0A287AGS3_PIG Isoform 1 of Pleckstrin homology and RhoGEF domain containing G1 OS=Sus scrofa OX=9823 GN=PLEKHG1 PE=4 SV=2 CANONICAL=A0A287AGS3-1" }, "locus": { "chromosome": "1", "start_pos": 15443349, "end_pos": 15344395, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038405.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038405.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043052.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043052.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGS3", "url": "https://www.uniprot.org/uniprotkb/A0A287AGS3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": 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"https://www.uniprot.org/uniprotkb/A0A287AGS3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1165, "end_pos": 1167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1176, "end_pos": 1178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1305, "end_pos": 1307, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1306, "end_pos": 1308, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1335, "end_pos": 1337, "annotation": "n_glycosylation_sequon" }, { "start_pos": 570, "end_pos": 572, "annotation": "n_glycosylation_sequon" }, { "start_pos": 614, "end_pos": 616, "annotation": "n_glycosylation_sequon" }, { "start_pos": 668, "end_pos": 670, "annotation": "n_glycosylation_sequon" }, { "start_pos": 733, "end_pos": 735, "annotation": "n_glycosylation_sequon" }, { "start_pos": 824, "end_pos": 826, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], 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"MAEPPSTVHGAPAATAVSEKEPFGKLQLPPRDPSGPLSAKKIRTEEKKTPRRLNGEGSSGGNSRLLQSPATPSPQSYGSSGSWSFAALSAVPTPSSSRSNFSFSSGTAVPSSASASSSQPVPRKLLVPPTLLHAQPHHLLLPAAASSANAKPRRPKEKREKERRRHGLGGAGEAGGAAREENGEMKPLQRDKIKDKIKERDKEKEREKKKHKVMNEIKKENGEVKILLKSGKEKPKTNVEDLQIKKVKKKKKKKHKENEKRKRPKMYSKSIQTICSGLLSDVEDQEAKGILNDNIRDYSGKNLDTKNYDSKIPENSEFPFVSFKEPRVQNNLRKLDTLEFKQLIHIEHQPNGGASVIHAYSNELSHLSPVEMERFAEEFVGLVFSENENSAAFYVMGIVHGAATYLPDFLDYFSFNFPNSPVKMEILGKKDIETTTMSNFHAQVKRTYSHGTYRAGPMRQISLVGAVDEEVGDYFPEFLDMLEDSPFLKCTLPWGTLSSLKLESRKDSDDGPIMWVRPGEQMIPVADMPKSPFKRKRTTNEIKNLQYLPRTSEPREMLFEDRTRAHADHIGQGFERQTTAAVGVLKAVHCGEWPDQPRITKDVICFHAEDFLEVVQRMQLDLHEPPLSQCVQWVDDAKLNQLRREGIRYARIQLYDNDIYFIPRNVVHQFKTVSAVCSLAWHVRLKLYHSEEDTAQNTVMHETDTLPDSKSSILGPHADNVICAVSKTSLDSIFPDKLHSKYELQQIKHESVASVRIKEEPVNVCIPEKTGAPNSMDGKNVKAKLDHIQFTELKINVDSKFDSSNKDLKGELCPRNLISLVDTRQHSSTHSNQDRKDDDILC", "length": 842, "header": "tr|A0A287AGU5-1|A0A287AGU5_PIG Isoform 1 of Round spermatid basic protein 1 like OS=Sus scrofa OX=9823 GN=RSBN1L PE=3 SV=1 CANONICAL=A0A287AGU5-1" }, "isoforms": [ { "isoform_ac": "A0A287AGU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGU5/entry#A0A287AGU5-1", "sequence": { "sequence": "MAEPPSTVHGAPAATAVSEKEPFGKLQLPPRDPSGPLSAKKIRTEEKKTPRRLNGEGSSGGNSRLLQSPATPSPQSYGSSGSWSFAALSAVPTPSSSRSNFSFSSGTAVPSSASASSSQPVPRKLLVPPTLLHAQPHHLLLPAAASSANAKPRRPKEKREKERRRHGLGGAGEAGGAAREENGEMKPLQRDKIKDKIKERDKEKEREKKKHKVMNEIKKENGEVKILLKSGKEKPKTNVEDLQIKKVKKKKKKKHKENEKRKRPKMYSKSIQTICSGLLSDVEDQEAKGILNDNIRDYSGKNLDTKNYDSKIPENSEFPFVSFKEPRVQNNLRKLDTLEFKQLIHIEHQPNGGASVIHAYSNELSHLSPVEMERFAEEFVGLVFSENENSAAFYVMGIVHGAATYLPDFLDYFSFNFPNSPVKMEILGKKDIETTTMSNFHAQVKRTYSHGTYRAGPMRQISLVGAVDEEVGDYFPEFLDMLEDSPFLKCTLPWGTLSSLKLESRKDSDDGPIMWVRPGEQMIPVADMPKSPFKRKRTTNEIKNLQYLPRTSEPREMLFEDRTRAHADHIGQGFERQTTAAVGVLKAVHCGEWPDQPRITKDVICFHAEDFLEVVQRMQLDLHEPPLSQCVQWVDDAKLNQLRREGIRYARIQLYDNDIYFIPRNVVHQFKTVSAVCSLAWHVRLKLYHSEEDTAQNTVMHETDTLPDSKSSILGPHADNVICAVSKTSLDSIFPDKLHSKYELQQIKHESVASVRIKEEPVNVCIPEKTGAPNSMDGKNVKAKLDHIQFTELKINVDSKFDSSNKDLKGELCPRNLISLVDTRQHSSTHSNQDRKDDDILC", "length": 842, "header": "tr|A0A287AGU5-1|A0A287AGU5_PIG Isoform 1 of Round spermatid basic protein 1 like OS=Sus scrofa OX=9823 GN=RSBN1L PE=3 SV=1 CANONICAL=A0A287AGU5-1" }, "locus": { "chromosome": "9", "start_pos": 102435173, "end_pos": 102367126, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049333.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049333.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043199.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043199.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 71, "start_aa": "Thr", "end_pos": 71, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr71", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 93, "start_aa": "Thr", "end_pos": 93, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr93", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGU5", "url": "https://www.uniprot.org/uniprotkb/A0A287AGU5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110262245", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110262245", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AD71-1", "protein_name": "Round spermatid basic protein 1-like", "gene_name": "Rsbn1l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEPPNPARGPVAVLSEKEAFGKLQPSSRESPGSMSAKKVRTEEKKGPRRVNGEGDSGGNGGQLQPPAAPSPQSYGSPAAWSFAARPAASSQATPRGCYAFSASPSVSSASASSSQPVPRKLLVASSLLHAQPHRVLLPPVTPPAAAKPRRPKEKREKEKRRHGLGGADRDENGEAKPLPRDKIKDKIKEKDKEKERERKKHKVMSEIKKENGDVKIFLKKDPGSILSTPYGGSQPSVTPSSALQGGKEKPKTNIEDLQIKKVKKKKKKKHKENEKRKRPKMYSKSIQTICSGLLSAEDQEAKGILNDNVKDCIGKHLDTKNCDSKVPDNSDFPFVSLKEPRVQNDLKRLDTLEFKQLIHVEHQPNGGASVIHAYCSELSCLSPVEMRRFAEEFVGLAFSENESSAAFYVMGVVHGAATYLPDFLDYFSYNFPNSPVKMEILGKKDIETTTMSNFHAQVKRTYSHGTYRAGPMRQISLVGAVDEEVGDYFPEFLDMLEESPFLKCTLPWGTLSSLKLESRKDSDDGPIMWVRPGEQMIPVADMPKSPFKRKRTTNEIKNLQYLPRTSEPREMLFEDRTRAHADHIGQGFERQTTAAVGVLKAVHCGQRPDQPRVTKDVICFHAEDFLEVVQRMQLDLHEPPLSQCVQWVDDAKLNQLRREGIRYARIQLYDNDIYFIPRNVVHQFKTVSAVCSLAWHVRLKLYHAEDTCHSTVTHEQGIPSGPTSSVLGTHTENQSSSDPVLSDRLHSKYESPQVKQEPVVSLNIKEEPVTVTVSAKTRTPNNTEGKSSKAKSDHVQFSDFHIDMDSKFENTNKDLKEDLCPGSVQEVDTRQHSCIPSNQDRSDENNVC", "length": 849 }, "evidence": [ { "id": "A0A287AGU5", "url": "https://omabrowser.org/oma/group/A0A287AGU5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0Y5U2-1", "protein_name": "Round spermatid basic protein 1 like", "gene_name": "RSBN1L", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAELPSSGRGAASPERELFCARPGPDTKASRGSQPASKKLKGADERGLKGAKRVNGEGGGGGGSSKQQQQPLPAAVPSYGNPAAWGFAALPPGPSVSAAGFAFPSPLPRKLLPPALLLPPAASPSPSCPQHRHHRHRPAPAGEAAKPKRPKEKRDKERRKHGALPALGDGGGGALSAAGREENGEVKLLLQKAQIKEKMKEREKKQKEKKKHKIMNEIKKENGEIKLLQKAGKEKPKTNAEELQIKKVKKKKKKKHKENEKRKRPKMYSKSIQTICSGLVSDVEDQEAKGIIDDHLKDFNGKNMDPKKDCESKIPENSEFPFVSLKEPRVQNKLKRLDTLEFKQLIHIEHQPNGGASVIHAYSNELSHLSPVEMERFAEEFVGLVFSENENCAAYYVMGIVHGAATYLPDFLDYFSFNFPNSPVKMEILGKKDIETTTMSNFHAQVKRTYSHGTYRAGPMRQISLVGAVDEEVGDYFPEFLDMLEESPFLKCTLPWGTLSSLKLESRKDSDDGPIMWVRPGEQMIPVADMPKSPFKRKRTTNEIKNLQYLPRTSEPREMLFEDRTRAHADHIGQGFERQTTAAVGVLKAVHCGEWSEQPRITKDVICFHAEDFLEVVQRMQLDLHEPPLSQCVQWVDDAKLNQLRREGIRYARIQLFDNDIYFIPRNVVHQFKTVSAVCSLAWHIRLKLYHSEEEPSQNASTLEAGSSADPKSSVIGLQTDSRICTISKNTSEDAKLSDVLQQEFMPIKHEPIASHRIKEEPMNVDLAEKTVAPHDGRGQNVQTRLDQVELTAFKLEMDSKSEPGNKDLQGKLCLGSHVHPDDTRQHSSYPKLHGQREDDFLC", "length": 843 }, "evidence": [ { "id": "A0A287AGU5", "url": "https://omabrowser.org/oma/group/A0A287AGU5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3Z0K6-1", "protein_name": "Round spermatid basic protein 1-like", "gene_name": "Rsbn1l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEPPNPARGAVALLSEKEASGKVQPSSREPPGSMSAKKVRTEEKKAPRRVNGEGGSGGNGGQLQPQSFGSPAAWSFAARPAASSSSTSRSCYSFSASPSVSSASASSSQPLPRKLLVTPSLLHAQPHRVLLPPVAPPAAAKPRRPKEKREKEKRRQHGLGAAARDENGEAKPLPRDKIKDKIKEKDKEREKKKHKVMSEIKKENGDVKILLKSGKEKPKTNIEDLQIKKVKKKKKKKHKENEKRKRPKMYSKSIQTICSGLLSAEDQEAKSILSDNVKDCIGKNLDTKNCDSKIPDNSDFPFVSLKEPRDKNNLRRLDTLAFRQLIHIEHQPNGGAAVIHAYSNELSCLSPMEMQRFAEEFVGLVFSENESSAAFYVMGIVHGAATYLPDFLDYFSYNFPNSPVKMEILGKKDIETTTMSNFHAQVKRTYSHGTYRAGPMRQISLVGAVDEEVGDYFPEFLDMLEASPFLKCTLPWGTLSSLKLESRKDSDDGPIMWVRPGEQMIPVADMPKSPFKRKRTTNEIKNLQYLPRTSEPREMLFEDRTRAHADHIGQGFERQTTAAVGVLKAVHCGQRPDQPRVTKDVICFHAEDFLEVVQRMQLDLHEPPLSQCVQWVDDAKLNQLRREGIRYARIQLYDNDIYFIPRNVVHQFKTVSAVCSLAWHVRLKFYHAEEDTCHSTSESTHEKGIASGPTSSVLGAHTENQASSDSVLSDKLPSKYESQQIKHEPGAALRIKEEPGMAPIPEKIRTPNNTEGKNSKARLDRAQFSDFHIDMDSAFENTNKDLKEDSCPGSVSNTVDTQQHSSVRSSQDRSEDDSLC", "length": 821 }, "evidence": [ { "id": "A0A287AGU5", "url": "https://omabrowser.org/oma/group/A0A287AGU5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PCB5-1", "protein_name": "Lysine-specific demethylase RSBN1L", "gene_name": "RSBN1L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEPPSPVHCVAAAAPTATVSEKEPFGKLQLSSRDPPGSLSAKKVRTEEKKAPRRVNGEGGSGGNSRQLQPPAAPSPQSYGSPASWSFAPLSAAPSPSSSRSSFSFSAGTAVPSSASASLSQPVPRKLLVPPTLLHAQPHHLLLPAAAAAASANAKSRRPKEKREKERRRHGLGGAREAGGASREENGEVKPLPRDKIKDKIKERDKEKEREKKKHKVMNEIKKENGEVKILLKSGKEKPKTNIEDLQIKKVKKKKKKKHKENEKRKRPKMYSKSIQTICSGLLTDVEDQAAKGILNDNIKDYVGKNLDTKNYDSKIPENSEFPFVSLKEPRVQNNLKRLDTLEFKQLIHIEHQPNGGASVIHAYSNELSHLSPMEMERFAEEFVGLVFSENENSAAFYVMGIVHGAATYLPDFLDYFSFNFPNSPVKMEILGKKDIETTTMSNFHAQVKRTYSHGTYRAGPMRQISLVGAVDEEVGDYFPEFLDMLEESPFLKCTLPWGTLSSLKLQSRKDSDDGPIMWVRPGEQMIPVADMPKSPFKRKRTTNEIKNLQYLPRTSEPREMLFEDRTRAHADHIGQGFERQTTAAVGVLKAVHCGEWPDQPRITKDVICFHAEDFLEVVQRMQLDLHEPPLSQCVQWVDDAKLNQLRREGIRYARIQLYDNDIYFIPRNVVHQFKTVSAVCSLAWHIRLKLYHSEEDTSQNTATHETGTSSDSTSSVLGPHTDNMICAVSKASLDSVFSDKLHSKYELQQIKHEPIASVRIKEEPVNVNIPEKTTALNNMDGKNVKAKLDHVQFAEFKIDMDSKFENSNKDLKEELCPGNLSLVDTRQHSSAHSNQDKKDDDILC", "length": 846 }, "evidence": [ { "id": "A0A287AGU5", "url": "https://omabrowser.org/oma/group/A0A287AGU5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGU5", "url": "https://www.uniprot.org/uniprotkb/A0A287AGU5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein demethylase activity", "id": "GO:0140457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140457", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGU5", "url": "https://www.uniprot.org/uniprotkb/A0A287AGU5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AGU5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 842, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AGU5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AGU5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 71, 93 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AGW6-1", "uniprot_ac": "A0A287AGW6", "uniprot_id": "A0A287AGW6_PIG", "mass": { "chemical_mass": 37826.0, "monoisotopic_mass": 37826.0 }, "refseq": {}, "gene_names": [ { "name": "LOC102159001", "type": "recommended", "evidence": [ { "id": "A0A287AGW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGW6" } ] } ], "protein_names": [ { "name": "Olduvai domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287AGW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AGW6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AGW6", "url": "https://www.uniprot.org/uniprotkb/A0A287AGW6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC102159001", "url": "https://www.uniprot.org/uniprotkb/A0A287AGW6", "locus": {} } ], "crossref": [ { "id": "A0A287AGW6", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AGW6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035091", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035091", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR010630", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010630", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055306", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055306", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14199", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14199", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14199:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14199:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AGW6", "url": "https://www.uniprot.org/uniprotkb/A0A287AGW6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AGW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGW6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVQERSDCTQPSGDGTCASDEPKVGPAADGACAGSHAKEDDVPTPHPAENQNGHEEVDGQEPLPPSAELQEVAKEEVLQAFPDEAVLAPCIQQEGSDCYPPCSDGKLAFDEQKKGSALDGACGCSPAAEGEIPAGPPENPHDRNGVKEPEPPVPRLRGELPPMAECGVPLNSLDGSAWSCPGLPDLSDSFWPYRSAATLSFENMDVPDAHDATSDTWGDCHKVPLSFGRPEMQSSQAQLQTSTQVANDLQLPLSQHLDRGDGKARLRLSSNIQGFTANTDTGNQGPLFRELGLDASIGMKTPPKLEGEGSAASRQECHVCHHLHALSFLKEKIIQRKLQFSKWRLACRFPGLLA", "length": 354, "header": "tr|A0A287AGW6-1|A0A287AGW6_PIG Isoform 1 of Olduvai domain-containing protein OS=Sus scrofa OX=9823 GN=LOC102159001 PE=3 SV=3 CANONICAL=A0A287AGW6-1" }, "isoforms": [ { "isoform_ac": "A0A287AGW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGW6/entry#A0A287AGW6-1", "sequence": { "sequence": 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"MLKRKPSNVSEKEKHQKPKRSSSFGNFDRFRNNSISKPDDSTGVNEGEPTNESGEQNKTSNNGGGLGKKMRAISWTMKKKAGKKYIKALSEEKDEEDGEDALPYRNSDPMIGNHTEKGSLKASDSMDSLYSGQSSSSGITSCSDGTSNRDSFRLDDDSPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVGNFKFIYVDVISEEEEAAPKKIKAHKRSGKEKPKTLQEFLERIHLQEYTSTLLLNGYESLEDLKDIKESHLIELNIKNPEDRMRLLSAAENLLDEETVQEQENESMPPSFSADISLNKSQLDDCPRDSGCYISSENSDNGKEDLESENLSDMVQKIAITEPID", "length": 374, "header": "tr|A0A287AH35-1|A0A287AH35_PIG Isoform 1 of SAM domain-containing protein SAMSN-1 OS=Sus scrofa OX=9823 GN=SAMSN1 PE=4 SV=1 CANONICAL=A0A287AH35-1" }, "locus": { "chromosome": "13", "start_pos": 179478876, "end_pos": 179432497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043622.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043622.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043292.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043292.1" } ] } }, { "isoform_ac": "A0A4X1UIW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH35/entry#A0A4X1UIW8-1", "sequence": { "sequence": "MLKRKPSNVSEKEKHQKPKVNEGEPTNESGEQNKTSNNGGGLGKKMRAISWTMKKKAGKKYIKALSEEKDEEDGEDALPYRNSDPMIGNHTEKGSLKASDSMDSLYSGQSSSSGITSCSDGTSNRDSFRLDDDSPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVGNFKFIYVDVISEEEEAAPKKIKAHKRSGKEKPKTLQEFLERIHLQEYTSTLLLNGYESLEDLKDIKESHLIELNIKNPEDRMRLLSAAENLLDEETVQEQENESMPPSFSADISLNKSQLDDCPRDSGCYISSENSDNGKEDLESENLSDMVQKIAITEPID", "length": 350, "header": "tr|A0A4X1UIW8-1|A0A4X1UIW8_PIG Computationally mapped isoform of SAM domain-containing protein SAMSN-1 OS=Sus scrofa OX=9823 GN=SAMSN1 PE=4 SV=1 CANONICAL=A0A287AH35-1" }, "locus": { "chromosome": "13", "start_pos": 179478876, "end_pos": 179432497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067892.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067892.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071368.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071368.1" } ] } }, { "isoform_ac": "A0A4X1UJM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH35/entry#A0A4X1UJM4-1", "sequence": { "sequence": "MLKRKPSNVSEKEKHQKPKKGDIIDIICKTPMGMWTGMLNNKVGNFKFIYVDVISEEEEAAPKKIKAHKRSGKEKPKTLQEFLERIHLQEYTSTLLLNGYESLEDLKDIKESHLIELNIKNPEDRMRLLSAAENLLDEETVQEQENESMPPSFSADISLNKSQLDDCPRDSGCYISSENSDNGKEDLESENLSDMVQKIAITEPID", "length": 206, "header": "tr|A0A4X1UJM4-1|A0A4X1UJM4_PIG Computationally mapped isoform of SAM domain, SH3 domain and nuclear localization signals 1 OS=Sus scrofa OX=9823 GN=SAMSN1 PE=4 SV=1 CANONICAL=A0A287AH35-1" }, "locus": { "chromosome": "13", "start_pos": 179478876, "end_pos": 179432497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061724.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061724.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040072.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040072.2" } ] } }, { "isoform_ac": "A0A5G2QMW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH35/entry#A0A5G2QMW1-1", "sequence": { "sequence": "MDSLYEPVPQQQAHQESTSGGTDSLFSPSSESGKAHSNLFMEVSNFENAKPKGKSIRRSMSESKVFEGKIVNDTIWQEPSKPENDSHIRRLCQLKDLDEDDFLLSDNIHTLQGKKLQGVSYQAIKSGGDPVESMGTLKRLQKRVWTKKVRVPTLNEMKPTLINLQDEDETLVSCMKLAKSQEKKVSNVSTRRKAEMEIRLDSISATLVRSSTSTGCSLAEMLSYNEGEVQMWNSWKPFPENPLWTYVDFQADQVGPWDNCFHCTHHPHLRSSCTDMDLPHSWRSSSFGNFDRFRNNSISKPDDSTGVNEGEPTNESGEQNKTSNNGGGLGKKMRAISWTMKKKAGKKYIKALSEEKDEEDGEDALPYRNSDPMIGNHTEKGSLKASDSMDSLYSGQSSSSGITSCSDGTSNRDSFRLDDDSPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVGNFKFIYVDVISEEEEAAPKKIKAHKRSGKEKPKTLQEFLERIHLQEYTSTLLLNGYESLEDLKDIKESHLIELNIKNPEDRMRLLSAAENLLDEETVQEQENESMPPSFSADISLNKSQLDDCPRDSGCYISSENSDNGKEDLESENLSDMVQKIAITEPID", "length": 637, "header": "tr|A0A5G2QMW1-1|A0A287AH35_PIG Computationally mapped isoform of SAM domain-containing protein SAMSN-1 OS=Sus scrofa OX=9823 GN=SAMSN1 PE=4 SV=2 CANONICAL=A0A287AH35-1" }, "locus": { "chromosome": "13", "start_pos": 179556438, "end_pos": 179432497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070236.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070236.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059651.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059651.2" } ] } }, { "isoform_ac": "A0A8D0UGJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH35/entry#A0A8D0UGJ9-1", "sequence": { "sequence": "MYTFGNFDRFRNNSISKPDDSTGVNEGEPTNESGEQNKTSNNGGGLGKKMRAISWTMKKKAGKKYIKALSEEKDEEDGEDALPYRNSDPMIGNHTEKGSLKASDSMDSLYSGQSSSSGITSCSDGTSNRDSFRLDDDSPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVGNFKFIYVDVISEEEEAAPKKIKAHKRSGKEKPKTLQEFLERIHLQEYTSTLLLNGYESLEDLKDIKESHLIELNIKNPEDRMRLLSAAENLLDEETVQEQENESMPPSFSADISLNKSQLDDCPRDSGCYISSENSDNGKEDLESENLSDMVQKIAITEPID", "length": 354, "header": "tr|A0A8D0UGJ9-1|A0A287AH35_PIG Computationally mapped isoform of SAM domain-containing protein SAMSN-1 OS=Sus scrofa OX=9823 GN=SAMSN1 PE=4 SV=1 CANONICAL=A0A287AH35-1" }, "locus": { "chromosome": "13", "start_pos": 179466482, "end_pos": 179432497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086955.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086955.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069786.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069786.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMW1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMW1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157298", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157298", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K960-1", "protein_name": "SAM domain-containing protein SAMSN-1", "gene_name": "Samsn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKRKPSNASEKEKHQKPKRSSSFGNFDRFRNNSISKSDDSIEVRDGELTNGSEEQSKTSNNGGSLGKKVRAISWTMKKKVGKKYIKALSEEKEEEIREETLQYRNSDPMIGTRTEKISLKASDSMDSLYSGQSSSSGITNCSDGTSNRDSFRLDDDSPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVGNFKFIYVDVISEEEAAPKKVKVPRSSRRENPQTLQEFLERIHLQEYTSAFLLNGYEALDDLKDIKESHLIELNIANPEDRARLLSAAESLLDEETAAEHEEEPVPLSSNPDILSESQLDDCPRDSGCYISSGNSDNGKEDPESQSLPDMVQKISITEPSD", "length": 372 }, "evidence": [ { "id": "A0A287AH35", "url": "https://omabrowser.org/oma/group/A0A287AH35/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P57725-1", "protein_name": "SAM domain-containing protein SAMSN-1", "gene_name": "Samsn1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLKRKPSNASDKEKHQKPKRSSSFGNFDRFRNNSVSKSDDSIEVHDRELTNGSEEQSKTSSSGGSLGKKVRAISWTMKKKVGKKYIKALSEEKEEESGEEALPYRNSDPMIGTHTEKISLKASDSMDSLYSGQSSSSGITSCSDGTSNRDSFRLDDDSPYSGPFCGRAKVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVGNFKFIYVDVILEEEAAPKKIKVPRSRRRENHQTIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLDEETTVEHEKESVPLSSNPDILSASQLEDCPRDSGCYISSENSDNGKEDLESENLSDMVQKIAITESSD", "length": 372 }, "evidence": [ { "id": "A0A287AH35", "url": "https://omabrowser.org/oma/group/A0A287AH35/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NSI8-1", "protein_name": "SAM domain-containing protein SAMSN-1", "gene_name": "SAMSN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLKRKPSNVSEKEKHQKPKRSSSFGNFDRFRNNSLSKPDDSTEAHEGDPTNGSGEQSKTSNNGGGLGKKMRAISWTMKKKVGKKYIKALSEEKDEEDGENAHPYRNSDPVIGTHTEKVSLKASDSMDSLYSGQSSSSGITSCSDGTSNRDSFRLDDDGPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVGNFKFIYVDVISEEEAAPKKIKANRRSNSKKSKTLQEFLERIHLQEYTSTLLLNGYETLEDLKDIKESHLIELNIENPDDRRRLLSAAENFLEEEIIQEQENEPEPLSLSSDISLNKSQLDDCPRDSGCYISSGNSDNGKEDLESENLSDMVHKIIITEPSD", "length": 373 }, "evidence": [ { "id": "A0A287AH35", "url": "https://omabrowser.org/oma/group/A0A287AH35/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphotyrosine residue binding", "id": "GO:0001784", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001784", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH35", "url": "https://www.uniprot.org/uniprotkb/A0A287AH35" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH35", "url": "https://www.uniprot.org/uniprotkb/A0A287AH35" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH35", "url": "https://www.uniprot.org/uniprotkb/A0A287AH35" } ], "pmid": "" }, { "name": "ruffle", "id": "GO:0001726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001726", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH35", "url": "https://www.uniprot.org/uniprotkb/A0A287AH35" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of intracellular signal transduction", "id": "GO:1902531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902531", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH35", "url": "https://www.uniprot.org/uniprotkb/A0A287AH35" } ], "pmid": "" }, { "name": "negative regulation of B cell activation", "id": "GO:0050869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050869", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH35", "url": "https://www.uniprot.org/uniprotkb/A0A287AH35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 314, "end_pos": 316, "annotation": "n_glycosylation_sequon" }, { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" }, { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AH35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AH35" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 242, "end_pos": 306, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AH35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AH35" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 163, "end_pos": 224, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 314, "end_pos": 316 }, { "start_pos": 328, "end_pos": 330 }, { "start_pos": 32, "end_pos": 34 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 51, "end_pos": 53 }, { "start_pos": 57, "end_pos": 59 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { 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}, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AH48-1", "uniprot_ac": "A0A287AH48", "uniprot_id": "A0A287AH48_PIG", "mass": { "chemical_mass": 26836.0, "monoisotopic_mass": 26836.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile 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"A0A287AH48", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AH48", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein 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"MENRNNVTEFFLLGLTQNPKIPLLGFPMYYFLAYLSFIDACYSCINTPKLSVDSLHEKKTSPFNECITQIFGEHLFAGADVILLTAMAYDCYVAICKPLLPFCGPNVIDHFMCDLNPLMDLACTDTHTLGLFVAANSGFICLLIFLLLIGSYTVILHSLRTPSLEARQKALSTCVSHITAVVFFFVPCIFVYWRPTATLPIDKAVAVFYTMITPMLNPLIYTLKNDQMKNAIRKLCRR", "length": 238, "header": "tr|A0A287AH48-1|A0A287AH48_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287AH48-1" }, "locus": { "chromosome": "AEMK02000537.1", "start_pos": 406079, "end_pos": 405175, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062191.2", "url": "https://www.ensembl.org/id/ENSSSCT00000062191.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043182.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043182.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH48", "url": "https://www.uniprot.org/uniprotkb/A0A287AH48" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": 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"https://www.uniprot.org/uniprotkb/A0A287AH53/entry#A0A287AH53-1", "sequence": { "sequence": "MTERFDCHHCENSLFGRKYVLREEQPYCVGCFEALFASTCEECGKLIGCDCKDLSYKDRHWHEACFHCSRCRSSLVDKPFAAKEDQVLCTDCYSQEYSSRCQECRKAIMPGTRKMEYKGSSWHETCFTCHRCQQPIGTKSFIPKDGQNFCVPCYEKQHALQCIQCKKPITSGGVTYREQPWHRECFVCTACKKPLSGQRFTSRDEFAYCLGCFCDLYAKKCTGCANPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFVTERDDILCPDCGKDI", "length": 279, "header": "tr|A0A287AH53-1|A0A287AH53_PIG Isoform 1 of Four and a half LIM domains 2 OS=Sus scrofa OX=9823 GN=FHL2 PE=1 SV=2 CANONICAL=A0A287AH53-1" }, "locus": { "chromosome": "3", "start_pos": 49446854, "end_pos": 49429577, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056902.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056902.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043187.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043187.2" } ] } }, { "isoform_ac": "A0A287AXG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH53/entry#A0A287AXG3-1", "sequence": { "sequence": "MLSELTSPYTKVVYLGVACPDPFSSHLQAVETNSADTLILDSQPSEMWQKSSTKMTERFDCHHCENSLFGRKYVLREEQPYCVGCFEALFASTCEECGKLIGCDCKDLSYKDRHWHEACFHCSRCRSSLVDKPFAAKEDQVLCTDCYSQEYSSRCQECRKAIMPGTRKMEYKGSSWHETCFTCHRCQQPIGTKSFIPKDGQNFCVPCYEKQHALQCIQCKKPITSGGVTYREQPWHRECFVCTACKKPLSGQRFTSRDEFAYCLGCFCDLYAKKCTGCANPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFVTERDDILCPDCGKDI", "length": 333, "header": "tr|A0A287AXG3-1|A0A287AXG3_PIG Computationally mapped isoform of Four and a half LIM domains 2 OS=Sus scrofa OX=9823 GN=FHL2 PE=1 SV=2 CANONICAL=A0A287AH53-1" }, "locus": { "chromosome": "3", "start_pos": 49446854, "end_pos": 49363555, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046834.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046834.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048828.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048828.2" } ] } }, { "isoform_ac": "A0A4X1W019-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH53/entry#A0A4X1W019-1", "sequence": { "sequence": "MTERFDCHHCENSLFGRKYVLREEQPYCVGCFEALFASTCEECGKLIGCDCKDLSYKDRHWHEACFHCSRCRSSLVDKPFAAKEDQVLCTDCYSQEYSSRCQECRKAIMPGTRKMEYKGSSWHETCFTCHRCQQPIGTKSFIPKDGQNFCVPCYEKQHALQCIQCKKPITSGGVTYREQPWHRECFVCTACKKPLSGQRFTSRDEFAYCLGCFCDLYAKKCTGCANPISAAVTGHIS", "length": 237, "header": "tr|A0A4X1W019-1|A0A287AH53_PIG Computationally mapped isoform of Four and a half LIM domains 2 OS=Sus scrofa OX=9823 GN=FHL2 PE=1 SV=1 CANONICAL=A0A287AH53-1" }, "locus": { "chromosome": "3", "start_pos": 49464615, "end_pos": 49429577, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105604.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105604.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080332.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080332.1" } ] } }, { "isoform_ac": "A0A4X1W032-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH53/entry#A0A4X1W032-1", "sequence": { "sequence": "MTERFDCHHCENSLFGRKYVLREEQPYCVGCFEALFASTCEECGKLIGCDCKDLSYKDRHWHEACFHCSRCRSSLVDKPFAAKEDQVLCTDCYSQEYSSRCQECRKAIMPGTRKMEYKGSSWHETCFTCHRCQQPIGTKSFIPKDGQNFCVPCYEKQHALQCIQCKKPITSGGVTYREQPWHRECFVCTACKKPLSGQRFTSRDEFAYCLGCFCDLYAKKCTGCANPISGECPGAPCLGHDLIVTEMTCVLEFLKASLMIQIHRKA", "length": 266, "header": "tr|A0A4X1W032-1|A0A287AH53_PIG Computationally mapped isoform of Four and a half LIM domains 2 OS=Sus scrofa OX=9823 GN=FHL2 PE=1 SV=1 CANONICAL=A0A287AH53-1" }, "locus": { "chromosome": "3", "start_pos": 49445417, "end_pos": 49429577, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008924.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008924.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008698.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008698.4" } ] } }, { "isoform_ac": "A0A5G2QC70-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH53/entry#A0A5G2QC70-1", "sequence": { "sequence": "MTERFDCHHCENSLFGRKYVLREEQPYCVGCFEALFASTCEECGKLIGCDCKAPARWNTRAAAGTRPASPATAASSPLGPRASSLRTARTSVCPAMRSSTPCSAFSAKSPSPAGASRTVSSPGTGSASCAPPARSHCPASASRPVTSSPTAWAASATCTPRSVQAAPTPSVDWAAPSTSPSRSGSGTTTASTARSARCRWWGEASSPRECDPQRSDFISRGPSFFISERGESGQRAISPMPSSPGGPGPPPFLPTLLRPSPAPLFAGLAYTQAAGVRLDPSSDSSATKKGILTPRSSRRSEDASSPTGAPGGEPHYPAAGVSGAAEDASERAQVPAPSRAGPPSPARAAPAPG", "length": 353, "header": "tr|A0A5G2QC70-1|A0A287AH53_PIG Computationally mapped isoform of Four and a half LIM domains 2 OS=Sus scrofa OX=9823 GN=FHL2 PE=1 SV=2 CANONICAL=A0A287AH53-1" }, "locus": { "chromosome": "3", "start_pos": 49465116, "end_pos": 49429577, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077238.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077238.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061679.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061679.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W019", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W019" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513532", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513532", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1P4R3-1", "protein_name": "Four and a half LIM domains 2", "gene_name": "FHL2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTERFDCHYCKESLFGKKYILREDSPYCVKCYENLYSNTCEECKKPIGADCKDLSYKDRHWHETCFHCFQCKNSLVDKPFAAKEEHLLCTDCYSNEYSSKCNECKKTIMPGTRKMEYKGNSWHETCFICYRCQQPIGTKSFIPKDNQNFCVPCYEKQFAMQCVQCKKAITTGGVTYREQPWHKECFVCTGCKKQLSGQRFTSRDEFAYCLSCFCNLYAKKCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPECGKDI", "length": 279 }, "evidence": [ { "id": "A0A287AH53", "url": "https://omabrowser.org/oma/group/A0A287AH53/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3H5P2-1", "protein_name": "Four and a half LIM domains protein 2", "gene_name": "Fhl2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTERFDCYHCNESLYGKKYILKEENPHCVACFEELYANTCEECGTPIGCDCKDLSYKDRHWHEGCFHCSRCGSSLVDKPFAAKEEQLLCTDCYSNEYSSKCQGCKKTIMPGTRKMEYKGSSWHETCFTCQRCQQPIGTKSFIPKEDQNFCVPCYEKQYALQCVQCKKPITTGGVTYREQPWHKECFVCTACKKQLSGQRFTARDEFPYCLTCFCELYAKKCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI", "length": 279 }, "evidence": [ { "id": "A0A287AH53", "url": "https://omabrowser.org/oma/group/A0A287AH53/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O70433-1", "protein_name": "Four and a half LIM domains protein 2", "gene_name": "Fhl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTERFDCHHCNESLYGKKYILKEENPHCVACFEELYANTCEECGTPIGCDCKDLSYKDRHWHEGCFHCSRCGSSLVDKPFAAKEEQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGSSWHETCFTCQRCQQPIGTKSFIPKENQNFCVPCYEKQYALQCVQCKKPITTGGVTYREQPWHKECFVCTACKKQLSGQRFTARDEFPYCLTCFCDLYAKKCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI", "length": 279 }, "evidence": [ { "id": "A0A287AH53", "url": "https://omabrowser.org/oma/group/A0A287AH53/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q14192-1", "protein_name": "Four and a half LIM domains protein 2", "gene_name": "FHL2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRHWHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI", "length": 279 }, "evidence": [ { "id": "A0A287AH53", "url": "https://omabrowser.org/oma/group/A0A287AH53/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q2KI95-1", "protein_name": "Four and a half LIM domains protein 2", "gene_name": "FHL2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTERFDCHHCEDSLFGRKYVLREEQPYCVACFEALFASTCEECGKLIGCDCKDLSYKDRHWHEACFHCSRCRGSLVDKPFAAKEDQLLCTDCYSQEYSSRCQECKKSIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDSENFCVPCYERQYALQCVQCKKPITTGGVTYREQPWHRECFVCTACKKPLSGQRFTSRDEFAYCLGCFCDLYAKKCAGCANPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI", "length": 279 }, "evidence": [ { "id": "A0A287AH53", "url": "https://omabrowser.org/oma/group/A0A287AH53/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q55DS4-1", "protein_name": "LIM domain-containing protein G", "gene_name": "limG", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSTETNNNLCIGCNKPFKSTDNIKTSNFKKYHEQCFSQDLNCSKCSGPIIASAEHKQVLGKIYHSKCFTCASCSKVLSDNDFSEISGIPCCKSCFTEIKFNPNFAISKFGSASAITQNDEKTKEKFEMKTNLYNNLQKGKDICTWCRNQIQADPDNEAVSFGGNIYHSNCFTCSKCSSSIGKNQFVTGSDGSAICKSCSDKSKQVNCFACKKPIDSTFTVVSGNKYHPNCFVCSQCKGSLEKGYIEKDGPVCGKCAATFTQPQTRTFAYSNGKGARPNGRW", "length": 281 }, "evidence": [ { "id": "A0A287AH53", "url": "https://omabrowser.org/oma/group/A0A287AH53/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH53", "url": "https://www.uniprot.org/uniprotkb/A0A287AH53" } ], "pmid": "" }, { "name": "negative regulation of calcineurin-NFAT signaling cascade", "id": "GO:0070885", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070885", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH53", "url": "https://www.uniprot.org/uniprotkb/A0A287AH53" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH53", "url": "https://www.uniprot.org/uniprotkb/A0A287AH53" } ], "pmid": "" }, { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH53", "url": "https://www.uniprot.org/uniprotkb/A0A287AH53" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH53", "url": "https://www.uniprot.org/uniprotkb/A0A287AH53" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH53", "url": "https://www.uniprot.org/uniprotkb/A0A287AH53" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AH53-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 279, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AH53-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AH53" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AH53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AH53" }, { "id": "PS50023", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50023" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LIM zinc-binding", "eco_id": "ECO_0000259", "start_pos": 38, "end_pos": 98, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AHA7-1", "uniprot_ac": "A0A287AHA7", "uniprot_id": "A0A287AHA7_PIG", "mass": { "chemical_mass": 56968.0, "monoisotopic_mass": 56968.0 }, "refseq": { "ac": "XP_020920791", "name": "basic immunoglobulin-like variable motif-containing protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920791" }, "gene_names": [ { "name": "BIVM", "type": "recommended", "evidence": [ { "id": "A0A287AHA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHA7" } ] }, { "name": "BIVM", "type": "synonym", "evidence": [ { "id": "XP_020920791", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920791" } ] } ], "protein_names": [ { "name": "Basic immunoglobulin-like variable motif-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287AHA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHA7/entry#names_and_taxonomy" } ] }, { "name": "basic immunoglobulin-like variable motif-containing protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020920791", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920791" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AHA7", "url": "https://www.uniprot.org/uniprotkb/A0A287AHA7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BIVM", "url": "https://www.uniprot.org/uniprotkb/A0A287AHA7", "locus": {} } ], "crossref": [ { "id": "A0A287AHA7", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AHA7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009534", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009534", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512068", "url": "https://www.ncbi.nlm.nih.gov/gene/100512068", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR060383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HCLMAFQ", "url": "https://omabrowser.org/oma/group/HCLMAFQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR16171", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16171", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16171:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16171:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28452", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28452", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020920791", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920791", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AHA7", "url": "https://www.uniprot.org/uniprotkb/A0A287AHA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHA7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RLP6", "url": "https://www.uniprot.org/uniprotkb/F1RLP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RLP6-1", "url": "https://www.uniprot.org/uniprotkb/F1RLP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPNVAEAERADASGNGECRSERRSPDENLQAATSSFCTRTPGEPLGPKGDGHYPWSCPVTHTREKIYAICSDYAFLNQATSIYKTPHSTRPSCLPDNTSLSAGNHSSRFVGSPTGTSEIIYKEENSLENLSNSLGKLPLAWEIDKSEFDGVTTNLKHKSGNVKKQISKKKTSDKKGRHQREWPQYSPLEDIKQRKVLDLRRWYCISRPQYKTSCGISSLISCWNFLYSTMGAGSLPAITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVKGCSYVLYKPHGKNKTAGETASGALSKLTHGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSRGPLSPQEVEYWILIGESSRKHPAIHCKKWADIVTDLNTQNPEYLDIRHLERGLQYRKTKKVGGNLHCIIAFQRLHWQRFGLWNFPFGTIRQESQPPPHAQGIAKSESEDNISKKQHGRLGRSFSASFHQDSTWKKMSSIHERRNSGYQGYSDYDGND", "length": 503, "header": "tr|A0A287AHA7-1|A0A287AHA7_PIG Isoform 1 of Basic immunoglobulin-like variable motif-containing protein OS=Sus scrofa OX=9823 GN=BIVM PE=3 SV=2 CANONICAL=A0A287AHA7-1" }, "isoforms": [ { "isoform_ac": "A0A287AHA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHA7/entry#A0A287AHA7-1", "sequence": { "sequence": "MPNVAEAERADASGNGECRSERRSPDENLQAATSSFCTRTPGEPLGPKGDGHYPWSCPVTHTREKIYAICSDYAFLNQATSIYKTPHSTRPSCLPDNTSLSAGNHSSRFVGSPTGTSEIIYKEENSLENLSNSLGKLPLAWEIDKSEFDGVTTNLKHKSGNVKKQISKKKTSDKKGRHQREWPQYSPLEDIKQRKVLDLRRWYCISRPQYKTSCGISSLISCWNFLYSTMGAGSLPAITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVKGCSYVLYKPHGKNKTAGETASGALSKLTHGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSRGPLSPQEVEYWILIGESSRKHPAIHCKKWADIVTDLNTQNPEYLDIRHLERGLQYRKTKKVGGNLHCIIAFQRLHWQRFGLWNFPFGTIRQESQPPPHAQGIAKSESEDNISKKQHGRLGRSFSASFHQDSTWKKMSSIHERRNSGYQGYSDYDGND", "length": 503, "header": "tr|A0A287AHA7-1|A0A287AHA7_PIG Isoform 1 of Basic immunoglobulin-like variable motif-containing protein OS=Sus scrofa OX=9823 GN=BIVM PE=3 SV=2 CANONICAL=A0A287AHA7-1" }, "locus": { "chromosome": "11", "start_pos": 71137436, "end_pos": 71115817, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062126.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062126.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043242.3", "url": "https://www.ensembl.org/id/ENSSSCP00000043242.3" } ] } }, { "isoform_ac": "F1RLP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHA7/entry#F1RLP6-1", "sequence": { "sequence": "MPNVAEAERADASGNGECRSERRSPDENLQAATSSFCTRTPGEPLGPKGDGHYPWSCPVTHTREKIYAICSDYAFLNQATSIYKTPHSTRPSCLPDNTSLSAGNHSSRFVGSPTGTSEIIYKEENSLENLSNSLGKLPLAWEIDKSEFDGVTTNLKHKSGNVKKQISKKKTSDKKGRHQREWPQYSPLEDIKQRKVLDLRRWYCISRPQYKTSCGISSLISCWNFLYSTMGAGSLPAITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVKGCSYVLYKPHGKNKTAGETASGALSKLTHGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFRGPLSPQEVEYWILIGESSRKHPAIHCKKWADIVTDLNTQNPEYLDIRHLERGLQYRKTKKVGGNLHCIIAFQRLHWQRFGLWNFPFGTIRQESQPPPHAQGIAKSESEDNISKKQHGRLGRSFSASFHQDSTWKKMSSIHERRNSGYQGYSDYDGND", "length": 502, "header": "tr|F1RLP6-1|A0A287AHA7_PIG Computationally mapped isoform of Basic immunoglobulin-like variable motif-containing protein OS=Sus scrofa OX=9823 GN=BIVM PE=3 SV=4 CANONICAL=A0A287AHA7-1" }, "locus": { "chromosome": "11", "start_pos": 71137436, "end_pos": 71115817, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010452.4", "url": "https://www.ensembl.org/id/ENSSSCT00000010452.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010181.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010181.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RLP6", "url": "https://www.uniprot.org/uniprotkb/F1RLP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XU40-1", "protein_name": "Basic immunoglobulin-like variable motif-containing protein", "gene_name": "BIVM", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPHISEDEKENGSGNNGNTEKKPGKESSEASLRDPIKSYCISDASTVSLVSRGDGHYPWGCPVTHTREKFYTICSDYAFLNRVTSICKSPSASVNACLSGSAALNVGNNTPSLLGIQTGASEIIYSEDANLETLSGSLGKLPLAWEIDKSEFNSVTANHKNKAGNMKKQVAKKKSSDKKSKQYKECPQLSALEDVKERKVLDLRRWYCISRPQYKTSCGISSLVSCWNFLYSTLGAGSLPPITQEEALHILGFQPPFEEIRFGPFTGNTTLMRWFRQINDHFHIKGCSYVLYKPHGKNKTAGETAVGALAKLTRGLKDESMAYIYHCQNHYFCPIGFEATPVKASKAGRVLQQEVEYWILIGEPSRKHPTIHCKRWTDIVTDLNTQNPEYLDIRHLERGLQHRKTKKVGGNLHCIIAFQRLNWQRFGPWNIPFGSVRQDKQSQTQGQGIAKSESEDNISKKQHGRLGRSFSAGFHQESTWKKSSLRERRNSGYQSYNDYDGDD", "length": 503 }, "evidence": [ { "id": "A0A287AHA7", "url": "https://omabrowser.org/oma/group/A0A287AHA7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A204-1", "protein_name": "Basic immunoglobulin-like variable motif-containing protein", "gene_name": "Bivm", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPNITEAGKATDSGRDEYRSENKSPEENLQGALPSFYANASGTPVGPRGDGHYPSSCPVTHTREKVYAICSDYAFLNQATSVYKTPSPARSACLPDNTSLSAGNSTRYIGIPTSTSEIIYNEDNNLENLPTSMGKLPLAWEIDKSEFDGVTTNLKHKSGNAKKQISKKKTSDKKGRYQRECLHYSPLDDVKQRKVLDLRRWYCISRPQYKTSCGISSLISCWNFLYSIMGAGNLPPITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVKGCSYVLYKPHGKNKTAGETAPGALSKLTQGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSKGPLSPQEVEYWILIGESSRKHPAIHCKRWADIVTDLNTQNPEFLDIRHLERGLQFRKTKKVGGNLHCIIAFQRLSWQRFGFWNFPFGTITQESQPPTHVLGIAKSESEDNISKKQYGRLGRSFSASFHQDSAWKKVSGIHERRNSGYHSYRDYNGND", "length": 502 }, "evidence": [ { "id": "A0A287AHA7", "url": "https://omabrowser.org/oma/group/A0A287AHA7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BC95-1", "protein_name": "Basic immunoglobulin-like variable motif-containing protein", "gene_name": "BIVM", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPNVAEAEGADDSGNGEHKSERRSPEESLQGAVQSFCTRASGEPLGPRGDGHYPWSCPVTHTREKIYAICSDYAFLNQATSIYKTPNPARSCLSDSTSLSAANNSSRYIGISASTSDIIYNEENSLENLSNSLGKLPLAWEIDKSEFDGVTTNLKHKSGNGKKQVSKKKTSDKKGRHQREWPQYSPLEDIKQRKVLDLRRWYCISRPQYKTSCGISSLVSCWNFLYSTMGAGKWFRQINDHFRVKGCSYVLYKPHGKNKTAGETASGALSKLTHGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAYSRGPLTPQEVEYWILIGESSRKHPAIHCKKWADIVTDLNTQNPEYLDIRHLERGLQYRKTKKVGGNLHCIIAFQRLSWQRFGLWNFPFGTIRQESQPPMHAHGIAKSESEDNISKKQHGRLGRSFSTGFHQDSTWKKMSSIHERRNSGYHGYSDYEGND", "length": 467 }, "evidence": [ { "id": "A0A287AHA7", "url": "https://omabrowser.org/oma/group/A0A287AHA7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q86UB2-1", "protein_name": "Basic immunoglobulin-like variable motif-containing protein", "gene_name": "BIVM", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPNVAETERSNDSGNGEHKSERKSPEENLQGAVKSFCTSASGAPLGPKGDGHYPWSCPVTHTREKIYAICSDYAFLNQATSIYKTPNPSRSPCLPDSTSLSAGNNSSRYIGIPTSTSEIIYNEENSLENLSNSLGKLPLAWEIDKSEFDGVTTNSKHKSGNAKKQVSKRKTSDKKGRYQKECPQHSPLEDIKQRKVLDLRRWYCISRPQYKTSCGISSLISCWNFLYSTMGAGNLPPITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVKGCSYVLYKPHGKNKTAGETASGALSKLTRGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSRGPLSPQEVEYWILIGESSRKHPAIHCKKWADIVTDLNTQNPEYLDIRHLERGLQYRKTKKVGGNLHCIIAFQRLNWQRFGLWNFPFGTIRQESQPPTHAQGIAKSESEDNISKKQHGRLGRSFSASFHQDSAWKKMSSIHERRNSGYQGYSDYDGND", "length": 503 }, "evidence": [ { "id": "A0A287AHA7", "url": "https://omabrowser.org/oma/group/A0A287AHA7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CBX9-1", "protein_name": "Basic immunoglobulin-like variable motif-containing protein", "gene_name": "Bivm", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPNATEAGKATDPGHGEHTSENKSPEEGLQGAVPSFYTSASEAPIAPRGDGHYPSSCPVTHTREKIYAICSDYAFLNQATSVYKTPSLTRSACLPDNTSLSAGNTTRYIGISTSTSEIIYNEENNLENLSTGMGKLPLAWEIDKSEFDGVTTNLIHKSGNVKKQFSKKKTSDKKGRHQRECLHYSPLDDVKQRKVLDLRRWYCISRPQYKTSCGISSLISCWNFLYSIMGAGNLPPITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVKGCSYVLYKPHGKNKTAGETAPGALSKLTRGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSRGPLSSQEVEYWILIGESSRKHPAIHCKRWADIVTDLNTQNPEFLDIRHLERGLQFRKTKKVGGNLHCIIAFQRLSWQRFGFWNFPFGTITQESQHPTHVPGIAKSESEDNISKKQHGRLGRSFSASFHQDSAWKNMSSIHERRNSGYHSFRDYNGND", "length": 502 }, "evidence": [ { "id": "A0A287AHA7", "url": "https://omabrowser.org/oma/group/A0A287AHA7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHA7", "url": "https://www.uniprot.org/uniprotkb/A0A287AHA7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA endonuclease activity", "id": "GO:0004520", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004520", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHA7", "url": "https://www.uniprot.org/uniprotkb/A0A287AHA7" } ], "pmid": "" }, { "name": "single-stranded DNA binding", "id": "GO:0003697", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003697", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHA7", "url": "https://www.uniprot.org/uniprotkb/A0A287AHA7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 456, "end_pos": 458, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AHA7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 503, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AHA7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AHA7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 129, "end_pos": 131 }, { "start_pos": 264, "end_pos": 266 }, { "start_pos": 294, "end_pos": 296 }, { "start_pos": 456, "end_pos": 458 }, { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"MDAPEEPLPPVIYTMENKPIVTCAGDPNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMIHLESNFVQFKEELLPKEGNRALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVVVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRAQESWSAFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCDYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLILRKPIDMEKRELIQRQEATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHSCVQELKLLEVSVPPGALDCWVFLSCLEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEQGPDSEDLNRTVDLLAGLGAERPETANTAQSPYKKLKEALSSVEAFEKHYLDLSCATIEMYTSIGRTRSAKFLGKDLAAFYMRKGCPQKAEAYLQGALKSYLAEGWALPVTHTRKQLAGCQKHLGQIENYLQTSSLLASDQHLPEDEREYFCREILSFASQQADSPGHRVVLPMHSLAHLRALRFSPASAVVHVGGALAVEMTVCSRMPVPVPLEQLAVSVHFSIEKGSCRKPAEWLTKHGAASGTVSFPPEPSALPASQSSLPALELHEVLERSPSDHSLSSAGIICKNVHMLLRRQEGAAALEVAAGLALEDGAHVLRCSGVTLQPGANTVTFRTQAKEPGTYTLRQLRASLGPVCFVLPHIYPPVQYDVYSQEPQLHVEPLADSLLAGIPQKVKFTVTTGHYTVKNGDSLQLSNVEAMLILCPAENRAVIYSNTREKASDASLRIQSSDKVTSISLPAAPAYHLIEFELEVLSLPSAPAAGGESTVPGMTEPPRKHKDTQQAGPCMATTDHKVSIDCPWSIYSTVIALTFRVPFGTSHALLSAGTRKYVQVRVQNLSELDFQLADARLADTADGPDLRLVPLNTEPRQRIHSKQAVFFVWELKWTREPPPSLHCRFSVRFCPASEEQLSVSLKPYTYEFQVENFFTLYSVKAEVSPPAGTEHCRTGALCSLEVCITRLSGLLEADQDEALTGSDEYFSTKLMYEVVDNSSNWAVCGKSSGVISMPAAAQATHRVHMEVLPLFAGYLPLPDVRLFKYLPHHSAHASQLDADSWIENDSLSLDKHGDDQLDSSSLRSRGSVHSTASSEHKGLPMPRLQALPPGQVFNSSAGTQVLVVPSRDDHVLEVSVT", "length": 1259, "header": "tr|A0A287AHI6-1|A0A287AHI6_PIG Isoform 1 of Trafficking protein particle complex subunit 10 OS=Sus scrofa OX=9823 GN=TRAPPC10 PE=4 SV=1 CANONICAL=A0A287AHI6-1" }, "isoforms": [ { "isoform_ac": "A0A287AHI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHI6/entry#A0A287AHI6-1", "sequence": { "sequence": "MDAPEEPLPPVIYTMENKPIVTCAGDPNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMIHLESNFVQFKEELLPKEGNRALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVVVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRAQESWSAFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCDYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLILRKPIDMEKRELIQRQEATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHSCVQELKLLEVSVPPGALDCWVFLSCLEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEQGPDSEDLNRTVDLLAGLGAERPETANTAQSPYKKLKEALSSVEAFEKHYLDLSCATIEMYTSIGRTRSAKFLGKDLAAFYMRKGCPQKAEAYLQGALKSYLAEGWALPVTHTRKQLAGCQKHLGQIENYLQTSSLLASDQHLPEDEREYFCREILSFASQQADSPGHRVVLPMHSLAHLRALRFSPASAVVHVGGALAVEMTVCSRMPVPVPLEQLAVSVHFSIEKGSCRKPAEWLTKHGAASGTVSFPPEPSALPASQSSLPALELHEVLERSPSDHSLSSAGIICKNVHMLLRRQEGAAALEVAAGLALEDGAHVLRCSGVTLQPGANTVTFRTQAKEPGTYTLRQLRASLGPVCFVLPHIYPPVQYDVYSQEPQLHVEPLADSLLAGIPQKVKFTVTTGHYTVKNGDSLQLSNVEAMLILCPAENRAVIYSNTREKASDASLRIQSSDKVTSISLPAAPAYHLIEFELEVLSLPSAPAAGGESTVPGMTEPPRKHKDTQQAGPCMATTDHKVSIDCPWSIYSTVIALTFRVPFGTSHALLSAGTRKYVQVRVQNLSELDFQLADARLADTADGPDLRLVPLNTEPRQRIHSKQAVFFVWELKWTREPPPSLHCRFSVRFCPASEEQLSVSLKPYTYEFQVENFFTLYSVKAEVSPPAGTEHCRTGALCSLEVCITRLSGLLEADQDEALTGSDEYFSTKLMYEVVDNSSNWAVCGKSSGVISMPAAAQATHRVHMEVLPLFAGYLPLPDVRLFKYLPHHSAHASQLDADSWIENDSLSLDKHGDDQLDSSSLRSRGSVHSTASSEHKGLPMPRLQALPPGQVFNSSAGTQVLVVPSRDDHVLEVSVT", "length": 1259, "header": "tr|A0A287AHI6-1|A0A287AHI6_PIG Isoform 1 of Trafficking protein particle complex subunit 10 OS=Sus scrofa OX=9823 GN=TRAPPC10 PE=4 SV=1 CANONICAL=A0A287AHI6-1" }, "locus": { "chromosome": "13", "start_pos": 207010167, "end_pos": 206936495, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045633.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045633.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043351.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043351.1" } ] } }, { "isoform_ac": "A0A5G2QNP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHI6/entry#A0A5G2QNP3-1", "sequence": { "sequence": "MDAPEEPLPPVIYTMENKPIVTCAGDPNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMIHLESNFVQFKEELLPKEGNRALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVVVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRAQESWSAFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCDYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDAKCGFYDSAGC", "length": 275, "header": "tr|A0A5G2QNP3-1|A0A287AHI6_PIG Computationally mapped isoform of Trafficking protein particle complex subunit 10 OS=Sus scrofa OX=9823 GN=TRAPPC10 PE=4 SV=1 CANONICAL=A0A287AHI6-1" }, "locus": { "chromosome": "13", "start_pos": 206976789, "end_pos": 206936495, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081191.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081191.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066513.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066513.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNP3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110256502", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256502", "resource": "KEGG Pathway" }, { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M4U3-1", "protein_name": "Trafficking protein particle complex subunit 10", "gene_name": "TRAPPC10", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDAPEEPLPPVIYTMENKPIVTCAGDQNLFTSIYPTLSQQLPREPMEWRRSYGRAPKMIHLESNFVQFKEELLPKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAYSSVDWLIVVVENDAKKKNKTNILPRASIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLILRKPIDMEKRELIQRQEATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHSCVQELKLLEVSVPPGALDCWVFLSCLEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTVDLLAGLGAERPETANTAQSPYKKLKEALSSVEAFEKHYLDLSHATIEMFTSIGRIRSAKLVGKDLAEFYMRKKSPQKAEMYLQGALKNYLAEGWALPITHTRKQLAECQKRLGQIENYLQTSSLLASDQHLTTDEREYFCREILSFASQQTDSPGHRVALPMHSFAQLRDLRFTPANAVVHVGGVLSVEITVCSQMPVPIHVEQIAIHVHFSIEKNSYRKTAEWLTKHKTANGVVNFPAEASPFPTSQSSLPALELYEMFERSPSDNSLNTTGIICKNVHMLLRRQESSTSLEASSGLALEDGAHVLRCAGVTLQPGPNTIVFRTQAREPGTYTLRQLCASLGPVWFVLPHIYPLVQYDVYSQEPQLLVEPLADSLLAGIPQKVKFTVTTGHYTVKNGDSLQLSNVDAMLILCPEENRAVIYSNTREKVSDALLRVQSSDKVTSISLPAAPTYHLIEFELEVLSLPSAPAAGGESTLLGVTEPHGKHKDTQKTGHCMATTDHKVSIDCPWSIYSTVIALTFSVPFRTTHSLLSSGTRKYVQVCVQNLSELDFQLSDSRLVDTHDSTDLRLIPLNTESEQCIHSRQAVFFVWELKWTQEPPPSLHCRFSTGFSPASEEQLSVSLKPYTYEFQVENFFTLYNVRAEISPPPGTEHCRTGSLCSLDVSITRLSDLLEVDKDEALMESDEYFSTKLMYEVVDNSSNWAVCGKSSGVISMPVTAQATHRVHMEVMPLFAGYLPLPDVRLFKYLPHHSAQSSQLDADSWIENDSLSVDKHVDDQLDSGSVKSRGSVHSAASSEHKGLPMPRLRALPPGQAFNSSAGTQVLVIPSKDDHVLEVSVT", "length": 1259 }, "evidence": [ { "id": "A0A287AHI6", "url": "https://omabrowser.org/oma/group/A0A287AHI6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0Y733-1", "protein_name": "Trafficking protein particle complex subunit 10", "gene_name": "TRAPPC10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDPAAAAAGEEEGGEKPPVIYTMENKPIVTCAGDQNLFTSLYPTLSQQLPREPMEWRRSYGRAPKMIHLESNFVQFKEELLPKEGNKALLTFPFLHIYWTECCDTEVYKTTVKDDITKWQNVLKAHNSVDWLIVVVESDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRSQESWNAFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVRSWNGLILRKPIDMEKRELIQNQEATLLDLRSYLFSRQCTLLIFLQRPWEVSQRALELLHNCVQELKLLEVSVPPGALDCWVFLSCLEVLQRIEGCCDRAQIDANVSHTVGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTVDLLAGLGAERPETANASQSPYKKLKEALSSVEAFEKHYLDLSHATIEMYTNIGRIRSAKLVGKDLAEFYMRKKGPQKAEVYLQGALKTYLAEGWALLVTHTRKQLAECQKHLGQIENYLQISSLLAGDNHLTEDERKRFCQEILDFANQQTENQGQKIILPMHSFAQLKTLHFDPPNAVVHVGGKLSIELTLLSQMPIPIQVDQIAIHVHFSIEKNNYRKTAEWLTKHKISNGVINFPNEVVGFPWSRNNLPALELYEMYERSPSDNSLNTAGIICKNVHMLLRRQESSSSLDKPSGLTLEDGAHVLKCHNLVLEPGVNKITFSTQAKEPGTYTLRQLCTSVGKIQFVLLHIYPIVQYDVYSQEPQLKVEPTTDSLLAGIPQKVKFTVTTGHYSMKSGDTLQLSNADAMPILYNPESKAVIYSNTREKISESSLRIQSSEKITSINLPVAPAYHVIEFELEVMYLPSATESAEEGENTTNKEVQRKNKEKQKLDNCMATVDQKVTIDCPWSIYSTIIALTFCIPFNAKHSLLSAGKRKYVQVCIQNLSELCFQLSDNNLKNTADCTDLQLVPLNPESQQVIYSKQSIFFVWELKWTKELPLSLQCLFSVSFCPATSEKQSLTLKPFTYEFQVENFFTLYHVKTEIFPPVGTEYCKTGSLCSLEVSITRLVDLSEVDRDEALTESDGYCTTKLMYEVVDNSSNWAVCGKSSGVISMPVAAQATHKVHMEVMPLFAGYLPFPDVRLFKYLPHHSAHSMQLDADSWIENDNLSVDKNVDDQADSSSIRSRGSLHSAASGEHKGLPMPRLQSFSSGQVFNCSTGMQILVIPSKDDHVLEVNIT", "length": 1267 }, "evidence": [ { "id": "A0A287AHI6", "url": "https://omabrowser.org/oma/group/A0A287AHI6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MAQ4-1", "protein_name": "Trafficking protein particle complex subunit 10", "gene_name": "Trappc10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDAPEEPQPPVVYTMENKPIVTCAGDQNLFTSIYPTLSQQLPREPMEWRRSYGRAPKMIHLESNFVQFKEELLPKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVVVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLVLRKPIDMEKRELIQKQEATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHSCVQELKLLEVSVPPGALDCWVFLSCLEVLQRIEGCCDRAQIDSNIAHMVGLWSYAMEKLKSLGYLCGLVSEKGPNSEDLNRTVDLLAGLGAERPETANTAQSPYKKLQEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKLVGKDLAEFYMRKRSPQKAEMYLQGALKNYMAEGWALPVTHTRKQLAECQKHLGQMENYLQTSSLLASDHHLTEEERKHFCQEILSFASQQEDKAGHKVVLPMHSFARLKDLHFDPPNAVVHAGGVLTVEITVCSQMPVPVHVDQIAVNVHFSIEKNNYRKTAEWLTKHKTSNGVITFPAEASLFPAPQNSLPALELSEMLERSPSDNSLNTTGIICRNVHMLLRRQESGSSLEPPSGLALEDGAHVLRCTSVTLQPGANKIVFKTQAKEPGTYTLRQLRASVGPVWFVLAHIHPIVQYDVYSQEPQLHVEPLADSLLAGIPQKVKFTVTTGHYTVKDGDSLQLSNVEAMLILCQAENRAVVYSNTREECSSALLRIQSSDKVTSIGLPTAPAYHVIEFELEVLSLPSAPAAVEDSSILGTPELHRKQKDSQRADHCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTAHSLLSAGTRKYVQVCVQNLSELDFELSDSNLEDKGHATDLRLVPLNTQSQQLIHSKQSVFFVWELTWTQEPPPPLHCRFSVGFSPASAERLTVSLKPYTYEFQVESFFTLYSVRAEILPASGAEFCKTGSLCSLEVCITRLADLLDVDKDEALVESEDYFSTKLMYEVVDNSSNWAVCGKSCGVIAMPLAAQATHRVHMEVMPLFAGYLPLPDVRLFKYLPHHSAHASQLDADSWIENDSLSVDKHLDDQLDCSSLRSRGSAHSTSSGEHKGLPMPRLQALPAGQVFNSSTGMQILVIPSQDDHVLEVSVT", "length": 1259 }, "evidence": [ { "id": "A0A287AHI6", "url": "https://omabrowser.org/oma/group/A0A287AHI6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P48553-1", "protein_name": "Trafficking protein particle complex subunit 10", "gene_name": "TRAPPC10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDASEEPLPPVIYTMENKPIVTCAGDQNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMIHLESNFVQFKEELLPKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVIVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLILRKPIDMEKRESIQRREATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHNCVQELKLLEVSVPPGALDCWVFLSCLEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTVDLLAGLGAERPETANTAQSPYKKLKEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKFVGKDLAEFYMRKKAPQKAEIYLQGALKNYLAEGWALPITHTRKQLAECQKHLGQIENYLQTSSLLASDHHLTEEERKHFCQEILDFASQPSDSPGHKIVLPMHSFAQLRDLHFDPSNAVVHVGGVLCVEITMYSQMPVPVHVEQIVVNVHFSIEKNSYRKTAEWLTKHKTSNGIINFPPETAPFPVSQNSLPALELYEMFERSPSDNSLNTTGIICRNVHMLLRRQESSSSLEMPSGVALEEGAHVLRCSHVTLEPGANQITFRTQAKEPGTYTLRQLCASVGSVWFVLPHIYPIVQYDVYSQEPQLHVEPLADSLLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAEAMLILCQAESRAVVYSNTREQSSEAALRIQSSDKVTSISLPVAPAYHVIEFELEVLSLPSAPALGGESDMLGMAEPHRKHKDKQRTGRCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTTHSLLSSGTRKYVQVCVQNLSELDFQLSDSYLVDTGDSTDLQLVPLNTQSQQPIYSKQSVFFVWELKWTEEPPPSLHCRFSVGFSPASEEQLSISLKPYTYEFKVENFFTLYNVKAEIFPPSGMEYCRTGSLCSLEVLITRLSDLLEVDKDEALTESDEHFSTKLMYEVVDNSSNWAVCGKSCGVISMPVAARATHRVHMEVMPLFAGYLPLPDVRLFKYLPHHSAHSSQLDADSWIENDSLSVDKHGDDQPDSSSLKSRGSVHSACSSEHKGLPMPRLQALPAGQVFNSSSGTQVLVIPSQDDHVLEVSVT", "length": 1259 }, "evidence": [ { "id": "A0A287AHI6", "url": "https://omabrowser.org/oma/group/A0A287AHI6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3TLI0-1", "protein_name": "Trafficking protein particle complex subunit 10", "gene_name": "Trappc10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDAPEEPQPPVVYTMENKPIVTCAGDQNLFTSIYPTLSQQLPREPMEWRRSYGRAPKMIHLESNFVQFKEELLPKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVVVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLVLRKPIDMEKRELIQKQEATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHSCVQELKLLEVSVPPGALDCWVFLSCLEVLQRIEGCCDRAQIDSNIAHMVGLWSYAMEKLKSLGYLCGLVSEKGPNSEDLNRTVDLLAGLGAERPETANTAQSPYKKLQEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKLVGKDLAEFYMRKRSPQKAEMYLQGALKNYLAEGWALPVTHTRKQLAECQKHLGQMENYLQTSSLLASDHHLTEEERKYFCQEILSFASQQEDNPGHKVVLPMQFARLKDLHFDPPNAVVHAGGVLTVEITVCSQMPIPVHVDQIAVNVHFSIEKNNYRKTAEWLTKHKTSNGIITFPAEASLFPASQNSLPALELSEMLERSPSDNSLNTTGIICRNVHMLLRRQESGSSLEPPSGLALEDGAHVLRCSSVTLQPGANKIAFKTQAKEPGTYTLRQLRASVGPVWFVLAHIHPIVQYDVYSQEPQLHVEPLADSLLAGIPQKVKFTVTTGHYTVKNGDSLQLSNVEAMLILCQAENRAVVYSNSREECSTALLRIQSSDKVTSIGLPTAPAYHVIEFELEVLSLPSAPASGGDTSVPGTPELHRKQKDSQRAGHCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTEHSLLSAGTRKYVQVCVQNLSELDFELSDSNLEDKGHATDLRLAPLNTQSQQLIHSKQSVFFVWELTWTQEPPPPLHCQFSVGFSPASEEQLTVSLKPYTYEFQVENFFTLYSVRAEILPASGAEYCKTGSLCSLEVSITRLADLLDVDKDEALVESEDYFSTKLMYEVVDNSSNWAVCGKSCGVIAMPLAAQATHRVHMEVMPLFAGYLPLPDVRLFKYLPHHSAHASQLDADSWIENDSLSVDKHLDDQLDCSSLRSRGSTHSTSSSEHKGLPMPRLQALPAGQVFNSSTGMQVLVIPSQDDHVLEVSVT", "length": 1258 }, "evidence": [ { "id": "A0A287AHI6", "url": "https://omabrowser.org/oma/group/A0A287AHI6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VFB7-1", "protein_name": "Trafficking protein particle complex subunit 10", "gene_name": "SIDL", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MQIKPIITYSGSCPLFRSLESQILNAIPLDTCEWRRTFQRPTKHVRLEAQAQQFNVAALEKYKQGDWSILEHPILHIFVTECNDVDTYKATIREAIDIWLKTLTSYGVSDWMILLVETLDMRKTKNFMPRTTVLDKIRLDFGTKNDDRCISVLNPAKFEQKSTESFRCLVQRIRFLMLTSYNRNIVKYEELIRSKREKRNIEGWDFRQYFFMQEDLALIFEKLELPTEALIQYDELDAMFSQFITHTGLNEKQQWLNHFRKPLDAFHGICLTRADKFEMRNKIRDEGVSLLEFRNYLFERQAYLLLTCNDIPEIAKRLLNFLFSTLREVELIKLECQEGALCCWEFVCALEVLQLCEQAMEPNELTCFQHCAPIWNLAKDKLYELGKLCGLLPGCTPTSEQLHIVVQLSSGIGDAPSEQHQFLQATPQLRDRSPNRKPKKSGAEQLKEALGSNQAFQKLYLELAELAISTYKHVTRLRSARLVGLDLGNFYCALNEPHKAVGFFTDLLRELKAENWHMLSSQTLLELANCYRKMGDSLAYTKTCSSISCCAELETLVRTFYFDEFLKSLKTLKTTLSAQPSIENANYCVLEDHFRILDIEVVNQKPIIQDDYILVQLKVESLYPRGVVAENVKLCYELEASSLELAMENVSLTASPSTVKAKDTSSRLKVSLQLVYKQDNRLHSAAVACDLPKSKQPVRRTSSTKRKLSPSVQADFTNFVQAENIALQPGVNLIEMKAKATRVGCWQFKQLCISMSSLEFLSEQLPFMPATFEISTKPASATLEFKTLIAGIVQPISLNVSGGSFIFPPDAKITLRCSKNLRIRQARNTDDEAAYNDDQSFESTLQVPLVQFKSFEERRIPLEVLTDMPGRKVSKHHEHHIALNCPWSRTELPIAVDFQPAMEATCRLHTCGTQKFLQVIMKGMEAHLLLQHAQVKCDVPGVQLLDLNPESQQPIEIYKSLTVTYLYEIQVEPLKTEHELPVVKVHFVIKYASLSQPDVWRTYGCAFDLVDYTTLFKLQAQLEPNELCRLRTVCNMNLKITKVHENPYTDLMYEVLNDQNLWAVCGRSAGVVSMKDVDSHSISLDVMPLSTGFLPMPSIRLSKYTAGGKSKTDGHSKVHPFPPGQVYNSTKSMQIHVIASVAGDQ", 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}, { "id": "PTHR36689:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36689:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A287AHK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV00", "url": "https://www.uniprot.org/uniprotkb/F1SV00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV00-1", "url": "https://www.uniprot.org/uniprotkb/F1SV00-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEKPKVYQGVRVKITVKELLQQRRAHQAASGGTLSGGTSVHLADPDSPSPSGLYFEPEPIPSMPNYFQPREFSSCVSCEENPSCLDQIFDSYLQAETHPDPSLTSMQSTPHCFPDSFQAAPFCFNQSLTPGSPSDSSTLSGSLDCSYSPAQLPACAPENYGSPPSLDPRNCGYPSEDYLYPPLPVHAQYDCFSTAPASVCCCASCEAEHLDPLRASEYFSYPSTDCVTFAPSATAGSDFYKRETNWDTCYS", "length": 252, "header": "tr|A0A287AHK0-1|A0A287AHK0_PIG Isoform 1 of POU class 2 homeobox associating factor 3 OS=Sus scrofa OX=9823 GN=POU2AF3 PE=4 SV=1 CANONICAL=A0A287AHK0-1" }, "isoforms": [ { "isoform_ac": "A0A287AHK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK0/entry#A0A287AHK0-1", "sequence": { "sequence": "MSEKPKVYQGVRVKITVKELLQQRRAHQAASGGTLSGGTSVHLADPDSPSPSGLYFEPEPIPSMPNYFQPREFSSCVSCEENPSCLDQIFDSYLQAETHPDPSLTSMQSTPHCFPDSFQAAPFCFNQSLTPGSPSDSSTLSGSLDCSYSPAQLPACAPENYGSPPSLDPRNCGYPSEDYLYPPLPVHAQYDCFSTAPASVCCCASCEAEHLDPLRASEYFSYPSTDCVTFAPSATAGSDFYKRETNWDTCYS", "length": 252, "header": "tr|A0A287AHK0-1|A0A287AHK0_PIG Isoform 1 of POU class 2 homeobox associating factor 3 OS=Sus scrofa OX=9823 GN=POU2AF3 PE=4 SV=1 CANONICAL=A0A287AHK0-1" }, "locus": { "chromosome": "9", "start_pos": 39081183, "end_pos": 39071845, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059383.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059383.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043466.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043466.2" } ] } }, { "isoform_ac": "F1SV00-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK0/entry#F1SV00-1", "sequence": { "sequence": "MPNYFQPREFSSCVSCEENPSCLDQIFDSYLQAETHPDPSLTSMQSTPHCFPDSFQAAPFCFNQSLTPGSPSDSSTLSGSLDCSYSPAQLPACAPENYGSPPSLDPRNCGYPSEDYLYPPLPVHAQYDCFSTAPASVCCCASCEAEHLDPLRASEYFSYPSTDCVTFAPSATAGSDFYKRETNWDTCYS", "length": 189, "header": "tr|F1SV00-1|A0A287AHK0_PIG Computationally mapped isoform of POU class 2 homeobox associating factor 3 OS=Sus scrofa OX=9823 GN=POU2AF3 PE=4 SV=1 CANONICAL=A0A287AHK0-1" }, "locus": { "chromosome": "9", "start_pos": 39081183, "end_pos": 39079252, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016383.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016383.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015942.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015942.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SV00", "url": "https://www.uniprot.org/uniprotkb/F1SV00" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512618", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512618", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9T2A7-1", "protein_name": "POU class 2 homeobox associating factor 3", "gene_name": "POU2AF3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSEKPKVYQGVRVKITVKELLQQRRAHQAASGGTQSGGNSVHLSDPVPPSSAGLYFEPEPIPSTPNYFQPREFSSCVSCEENPGFLDQIFDSYLQPETHPDPSLSSMQSTPHYFPDSFQAAPFCFNQSLTPESPSDSSTLSGSLDYNYCPAQLPSYTAESHTALPQLDTRNCGHPSEDYTYSHPPAHAQYDSFSPASICCCASCEAERLDAFRASDCFSYPSTDYVNFAPSAAASSDLYKRETNWDICYS", "length": 250 }, "evidence": [ { "id": "A0A287AHK0", "url": "https://omabrowser.org/oma/group/A0A287AHK0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0LN29-1", "protein_name": "POU class 2 homeobox associating factor 3", "gene_name": "Pou2af3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEKPKVYQGVRVKMTVKELLQQRRAHQAASGATLTGSSSIHLPDTTMPSPAGLYFEPEPTSSTPSYFQAREFSTCVSCEENPSCLDQIFESYLQTDTPPEPLLNSAQIAPHYFPESCPVASFCHNLMPGSPSDSSSLSGSYDCSYSPAQLPAYTPENYTFPPSLDSLYSSLPEEGYFCQHWPSHPQYNHSSPTTPSSVCYYASCEAEHLDALRTTELFSYPGMDCMDFAPSAATTGDFYKRETSCDACYS", "length": 251 }, "evidence": [ { "id": "A0A287AHK0", "url": "https://omabrowser.org/oma/group/A0A287AHK0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A8K830-5", "protein_name": "POU class 2 homeobox associating factor 3", "gene_name": "POU2AF3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSEKPKVYQGVRVKITVKELLQQRRAHQAASGGTRSGGSSVHLSDPVAPSSAGLYFEPEPISSTPNYLQRGEFSSCVSCEENSSCLDQIFDSYLQTEMHPEPLLNSTQSAPHHFPDSFQATPFCFNQSLIPGSPSNSSILSGSLDYSYSPVQLPSYAPENYNSPASLDTRTCGYPPEDHSYQHLSSHAQYSCFSSATTSICYCASCEAEDLDALQAAEYFYPSTDCVDFAPSAAATSDFYKRETNCDICYS", "length": 251 }, "evidence": [ { "id": "A0A287AHK0", "url": "https://omabrowser.org/oma/group/A0A287AHK0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F8VPY8-1", "protein_name": "POU Class 2 homeobox-associating factor 3", "gene_name": "Pou2af3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSEKPKVYQGVRVKMTVKELLQQRRAHQATSGANLSGSSGLHLPDTTMPSSAGLYFEPEPTSSTPSYFQTREFSTCVSCEEIPSCLDQIFESYLQTDTLPEPLLNSAQIAPHYFPESCQVAPFCHNQSLIPGSPSDSSSLSGSFDCSYSPTQLPSYTPENYSSPPSLDSLHSSLPEEGYFCQHWPSHPQYNHSSPATPSSVCYYASCEAEHLDALRTTEFFSYSGMDCADFAPPVATTGDFYKRETSCDACYS", "length": 253 }, "evidence": [ { "id": "A0A287AHK0", "url": "https://omabrowser.org/oma/group/A0A287AHK0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK0" } ], "pmid": "" }, { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK0" } ], "pmid": "" }, { "name": "POU domain binding", "id": "GO:0070974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070974", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHK0", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AHK0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 252, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AHK0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AHK0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AHK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK0" }, { "id": "PS52003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "OCA", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 27, "start_aa": "Pro", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"uniprot_ac": "A0A287AHL8", "uniprot_id": "A0A287AHL8_PIG", "mass": { "chemical_mass": 35269.0, "monoisotopic_mass": 35269.0 }, "refseq": { "ac": "XP_020928311", "name": "PIN2/TERF1-interacting telomerase inhibitor 1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928311" }, "gene_names": [ { "name": "PINX1", "type": "recommended", "evidence": [ { "id": "A0A287AHL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHL8" } ] }, { "name": "PINX1", "type": "synonym", "evidence": [ { "id": "XP_020928311", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928311" } ] } ], "protein_names": [ { "name": "G-patch domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287AHL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHL8/entry#names_and_taxonomy" } ] }, { "name": "PIN2/TERF1-interacting telomerase inhibitor 1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020928311", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928311" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AHL8", "url": "https://www.uniprot.org/uniprotkb/A0A287AHL8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PINX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHL8", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000009692", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009692", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154593", "url": "https://www.ncbi.nlm.nih.gov/gene/100154593", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050656", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050656", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PCWDQSS", "url": "https://omabrowser.org/oma/group/PCWDQSS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23149", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23149", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23149:SF27", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23149:SF27", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01585", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01585", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020928311", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928311", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AHL8", "url": "https://www.uniprot.org/uniprotkb/A0A287AHL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ22", "url": "https://www.uniprot.org/uniprotkb/F1RJ22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ22-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ22-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAQDEVGRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGATINNEDNWIAHQDDFNQLLAALNTCHGQETADSSDNKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQKKKTPEETSSPATPEGTETTTTTSAFTIHEYFAKRMAERKNKLQDTAEGPGVSETPLQSKRGKKRKKEAKDKSVENGTQPKAKKKRARAEWQLGDPGRDENSGVSAEDREGSREVLSDQDFPLKPRRRKEKKKLPKPVEAAVAGMLEETPVKKKKKKKDSE", "length": 313, "header": "tr|A0A287AHL8-1|A0A287AHL8_PIG Isoform 1 of G-patch domain-containing protein OS=Sus scrofa OX=9823 GN=PINX1 PE=4 SV=1 CANONICAL=A0A287AHL8-1" }, "isoforms": [ { "isoform_ac": "A0A287AHL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHL8/entry#A0A287AHL8-1", "sequence": { "sequence": "MEAQDEVGRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGATINNEDNWIAHQDDFNQLLAALNTCHGQETADSSDNKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQKKKTPEETSSPATPEGTETTTTTSAFTIHEYFAKRMAERKNKLQDTAEGPGVSETPLQSKRGKKRKKEAKDKSVENGTQPKAKKKRARAEWQLGDPGRDENSGVSAEDREGSREVLSDQDFPLKPRRRKEKKKLPKPVEAAVAGMLEETPVKKKKKKKDSE", "length": 313, "header": "tr|A0A287AHL8-1|A0A287AHL8_PIG Isoform 1 of G-patch domain-containing protein OS=Sus scrofa OX=9823 GN=PINX1 PE=4 SV=1 CANONICAL=A0A287AHL8-1" }, "locus": { "chromosome": "14", "start_pos": 14040838, "end_pos": 13967956, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036765.1", "url": "https://www.ensembl.org/id/ENSSSCT00000036765.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043532.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043532.1" } ] } }, { "isoform_ac": "F1RJ22-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHL8/entry#F1RJ22-1", "sequence": { "sequence": "MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGATINNEDNWIAHQDDFNQLLAALNTCHGQETADSSDNKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQKKKTPEETSSPATPEGTETTTTTSAFTIHEYFAKRMAERKNKLQDTAEGPGVSETPLQSKRGKKRKKEAKDKSVENGTQPKAKKKRARAEWQLGDPGRDENSGVSAEDREGSREVLSDQDFPLKPRRRKEKKKLPKPVEAAVAGMLEETPVKKKKKKKDSE", "length": 312, "header": "tr|F1RJ22-1|A0A287AHL8_PIG Computationally mapped isoform of G-patch domain-containing protein OS=Sus scrofa OX=9823 GN=PINX1 PE=4 SV=2 CANONICAL=A0A287AHL8-1" }, "locus": { "chromosome": "14", "start_pos": 14041700, "end_pos": 13967956, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010627.4", "url": "https://www.ensembl.org/id/ENSSSCT00000010627.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010351.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010351.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 165, "start_aa": "Thr", "end_pos": 165, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr165", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJ22", "url": "https://www.uniprot.org/uniprotkb/F1RJ22" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7J7V0-1", "protein_name": "PIN2/TERF1-interacting telomerase inhibitor 1 isoform X1", "gene_name": "Pinx1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSMLAEPRRKQKWTVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATEHIKVKVKNNNLGLGATNNNEDNWIAHQDDFNQLLAALNTCHSQETADSSDNKEKKSFSLEEKSKNSKNRVHYMKFTKGKDLSSRSETDLDCIFGKRKNQKTAQKEYMLLHQRGKPLCCMLALFGKDGCSTSIADEVDTSMMTTTTSAFTIQEYFAKRMAQLKSKPRASAPEPDISETSDEWKKEKKKTKEAAVTDVENSPQHKAKRHKKKRRAKAEVEPVIKKRDRLELQPGGPSGDECSEASAEAEEDCEQSPSSQGDVLKSKKRKAKKKLQRPGRVEIDTTLEKAPVKKKKKASR", "length": 351 }, "evidence": [ { "id": "A0A287AHL8", "url": "https://omabrowser.org/oma/group/A0A287AHL8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A4L691-1", "protein_name": "PIN2/TERF1-interacting telomerase inhibitor 1", "gene_name": "Pinx1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQKMLEKMGWSKGKGLGAQEQGATEHIKVKVKNNHLGLGATNNNEDNWIAHQDDFNQLLAALNTCHGQETADSSDNKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSETDLDCIFGKRRNKKLAQDGCSNSTADEADTSLTTTTTTTSAFTIQEYFAKRMAQLKSKSQAAAPGSDLSETPIEWKKGKKKTKEAAGTDIENSPQHKAKRHKKKKRVEAERGPAAKKRDQVELQPGGPSGDECSDASVEAAEDRVQTPDTQDDVPKPRKRRAKKTLQRPGGVAVDTAPDSAPVKKKKKVSR", "length": 331 }, "evidence": [ { "id": "A0A287AHL8", "url": "https://omabrowser.org/oma/group/A0A287AHL8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54XG0-1", "protein_name": "Uncharacterized G-patch domain protein DDB_G0278987", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSDEGETPKMGFGHAMLLKMGWKGKGLGVEEDGRTEIIVNKKKQDKVGVGASISDRVSTSNNWESTNEAYDHILAKLNGVDEITWKKKNNKFVKEEKITFKRTIKKNSKKNKDESDSDSDSDSESESDKKPTKKQKVQSDSDSSCSDSSSSSSSSSSESEKEDKSSSNTTSDESDKESSSDSSDSSESENEKKDKKKIVNNKKGKDSDSSSSSDDSCSSESDSSSSSSSSSSSSDSSSESDSDNKNKNKNKNKNKKSKESDSSSSSSSSESEEEEKKEVAKKSFSVSKTRYQRLLRAKSVKNYSEDDLREILGYRPNQDTRKLKTKE", "length": 328 }, "evidence": [ { "id": "A0A287AHL8", "url": "https://omabrowser.org/oma/group/A0A287AHL8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q96BK5-1", "protein_name": "PIN2/TERF1-interacting telomerase inhibitor 1", "gene_name": "PINX1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQSKKTPEGDASPSTPEENETTTTSAFTIQEYFAKRMAALKNKPQVPVPGSDISETQVERKRGKKRNKEATGKDVESYLQPKAKRHTEGKPERAEAQERVAKKKSAPAEEQLRGPCWDQSSKASAQDAGDHVQPPEGRDFTLKPKKRRGKKKLQKPVEIAEDATLEETLVKKKKKKDSK", "length": 328 }, "evidence": [ { "id": "A0A287AHL8", "url": "https://omabrowser.org/oma/group/A0A287AHL8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CZX5-1", "protein_name": "PIN2/TERF1-interacting telomerase inhibitor 1", "gene_name": "Pinx1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"url": "https://www.uniprot.org/uniprotkb/A0A287AHM7/entry#A0A287AHM7-1", "sequence": { "sequence": "METVLVKTLQKRQVFFLVILLLLWEAGSEAIRYSMPEERESGSFVANLAKDLGLGLLQLDVKTGDLLLSEKLDREGLCGATDPCILHFQLLLENPVQFFQAELELTDINDHSPEFPDREMLLKIPESVQPGAVFPLKTAQDLDIGNNTVQRYAVSPNSHFHVVTHNRGDGRKFPELMLDKAVDREEQPELSLILTALDGGAPPRSGTTAVRIEVVDINDNAPEFLQSLYEVQIPENSPLNTLVAAVSARDLDAGTYGNVAYALFQGDEVTQPFVIDELTGEIRLQRALDFEETQKYNMEITATDGGGLSGKCTVAIEVEDVNDNAPELTMSTLASSTPENSPETVVAVFSVSDPDSGDNGRMVCSIQDDLPFLLKPTFKNFYTLVTERPLDREERAEYNITITVGDLGTPRRHTQHNLTVRVADVNDNAPAFSQPAYTLRVRENNSPALHIGTVRATDADAGANAQLTYSLLPPSDPHLPLASLVAINPDTGQLFALRVRAADRGAPALSSQARVRVLVADANDHAPVVLYPPPNASAPCTELLPRAAEPGYLLAKVVAVDGDAGQNAWLSYRLLQATEPGLFGVGAHSGEVRTARPLSERDAPRQRLLLLVRDHGEPPLSASVPLHVLLVDGFSQPYLPPPEAPGRAPGAGAGADEPLTVALVGALACVSALLVGALLALAAGRLCRRGGAASAGGCAGPAEGGVPGQLLDVGGTGTLAHGYRYEVCLTEGSGLKEFKFLKPILPNLPPQGEYMHMTINRHEKA", "length": 765, "header": "tr|A0A287AHM7-1|A0A287AHM7_PIG Isoform 1 of Cadherin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100514515 PE=4 SV=2 CANONICAL=A0A287AHM7-1" }, "locus": { "chromosome": "2", "start_pos": 142859283, "end_pos": 142855948, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054747.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054747.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043395.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043395.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHM7", "url": "https://www.uniprot.org/uniprotkb/A0A287AHM7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHM7", "url": "https://www.uniprot.org/uniprotkb/A0A287AHM7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHM7", "url": 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"database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 115, "start_aa": "Ile", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 146, "end_pos": 148 }, { "start_pos": 399, "end_pos": 401 }, { "start_pos": 417, "end_pos": 419 }, { "start_pos": 444, "end_pos": 446 }, { "start_pos": 535, "end_pos": 537 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"MFTSTGSSGLYKAPLSKSLLLVPSALSLLLALLLPHCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASFLLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILGPLSITNKTLIYILGLQLFTSGSYIWIVAISGLVSGICYNSQVLQMHEVLCVPSWMAKFCSWALEPIFSSSEPTTEARIGMGATVDIQRQQRMELLDRQLTLAQFAHSRRQRQQQGGMINWNRLFPPLRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQQ", "length": 345, "header": "tr|A0A287AHQ1-1|A0A287AHQ1_PIG Isoform 1 of Ubiquitin-associated domain-containing protein 2 OS=Sus scrofa OX=9823 GN=UBAC2 PE=4 SV=1 CANONICAL=A0A287AHQ1-1" }, "isoforms": [ { "isoform_ac": "A0A287AHQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ1/entry#A0A287AHQ1-1", "sequence": { "sequence": "MFTSTGSSGLYKAPLSKSLLLVPSALSLLLALLLPHCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASFLLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILGPLSITNKTLIYILGLQLFTSGSYIWIVAISGLVSGICYNSQVLQMHEVLCVPSWMAKFCSWALEPIFSSSEPTTEARIGMGATVDIQRQQRMELLDRQLTLAQFAHSRRQRQQQGGMINWNRLFPPLRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQQ", "length": 345, "header": "tr|A0A287AHQ1-1|A0A287AHQ1_PIG Isoform 1 of Ubiquitin-associated domain-containing protein 2 OS=Sus scrofa OX=9823 GN=UBAC2 PE=4 SV=1 CANONICAL=A0A287AHQ1-1" }, "locus": { "chromosome": "11", "start_pos": 68318609, "end_pos": 68145498, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060273.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060273.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043567.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043567.1" } ] } }, { "isoform_ac": "A0A287BAH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ1/entry#A0A287BAH1-1", "sequence": { "sequence": "CSPAPAPELEVTKHKAPLSKSLLLVPSALSLLLALLLPHCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASFLLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILGPLSITNKTLIYILGLQLFTSGSYIWIVAISGLVSGICYNSQVLQMHEVLCVPSWMAKFCSWALEPIFSSSEPTTEARIGMGATVDIQRQQRMELLDRQLTLAQFAHSRRQRQQQGGMINWNRLFPPLRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQQ", "length": 348, "header": "tr|A0A287BAH1-1|A0A287BAH1_PIG Computationally mapped isoform of Ubiquitin-associated domain-containing protein 2 OS=Sus scrofa OX=9823 GN=UBAC2 PE=4 SV=2 CANONICAL=A0A287AHQ1-1" }, "locus": { "chromosome": "11", "start_pos": 68318609, "end_pos": 68145499, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059647.2", "url": "https://www.ensembl.org/id/ENSSSCT00000059647.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053504.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053504.2" } ] } }, { "isoform_ac": "A0A5G2QI04-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ1/entry#A0A5G2QI04-1", "sequence": { "sequence": "MYKAPLSKSLLLVPSALSLLLALLLPHCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASFLLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILGPLSITNKTLIYILGLQLFTSGSYIWIVAISGLVSGICYNSQVLQMHEVLCVPSWMAKFCSWALEPIFSSSEPTTEARIGMGATVDIQRQQRMELLDRQLTLAQFAHSRRQRQQQGGMINWNRLFPPLRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQQ", "length": 336, "header": "tr|A0A5G2QI04-1|A0A287AHQ1_PIG Computationally mapped isoform of Ubiquitin-associated domain-containing protein 2 OS=Sus scrofa OX=9823 GN=UBAC2 PE=4 SV=2 CANONICAL=A0A287AHQ1-1" }, "locus": { "chromosome": "11", "start_pos": 68318609, "end_pos": 68150048, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072034.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072034.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064419.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064419.2" } ] } }, { "isoform_ac": "F1RP28-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ1/entry#F1RP28-1", "sequence": { "sequence": "MFTSTGSSGLYKAPLSKSLLLVPSALSLLLALLLPHCQRFFVYDLQAVKDEFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASFLLGSWVLSAVGDFILVEAVQYSFGITAARNLPSGFLAPVFALFVPFYCSIPRVQVAHILGPLSITNKTLIYILGLQVSGICYNSQVLQMHEVLCVPSWMAKFCSWALEPIFSSSEPTTEARIGMGATVDIQRQQRMELLDRQLTLAQFAHSRRQRQQQGGMINWNRLFPPLRQRRNVNYQDGRRSEPQASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQQ", "length": 329, "header": "tr|F1RP28-1|A0A287AHQ1_PIG Computationally mapped isoform of Ubiquitin-associated domain-containing protein 2 OS=Sus scrofa OX=9823 GN=UBAC2 PE=4 SV=3 CANONICAL=A0A287AHQ1-1" }, "locus": { "chromosome": "11", "start_pos": 68318609, "end_pos": 68145498, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010434.4", "url": "https://www.ensembl.org/id/ENSSSCT00000010434.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010163.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010163.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI04", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI04" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521745", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521745", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1LQF5-1", "protein_name": "Ubiquitin-associated domain-containing protein 2", "gene_name": "Ubac2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFTSTGSSGLYKAPLSKSLLLVPSTLSLLLTLLLPHCQKFFVYDLHAVKNDFQIWRLICGRIICLDLKDAFCSGLLIYNFRIFERRFGSRKFASFLLGSWVLSALFDFILVEAVQYLLGVTVASNLPSGFLAPVFALFVPFHCSIPRVQVAQILGPLSITNKTLIYILGLQLFTSGSYIWIVAMSGLISGMCYDRRVLQVHQVLCIPSRLAQFFSWALEPIFSSSEPTSEARVGMGATVDIQRQQRMEQLDRQLMLSQFAQVRRQRQQQGGMINWNRLFPPLRQRRNINYQEGPRSEQRAPPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH", "length": 345 }, "evidence": [ { "id": "A0A287AHQ1", "url": "https://omabrowser.org/oma/group/A0A287AHQ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8NBM4-1", "protein_name": "Ubiquitin-associated domain-containing protein 2", "gene_name": "UBAC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFTSTGSSGLYKAPLSKSLLLVPSALSLLLALLLPHCQKLFVYDLHAVKNDFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASFLLGSWVLSALFDFLLIEAMQYFFGITAASNLPSGFLAPVFALFVPFYCSIPRVQVAQILGPLSITNKTLIYILGLQLFTSGSYIWIVAISGLMSGLCYDSKMFQVHQVLCIPSWMAKFFSWTLEPIFSSSEPTSEARIGMGATLDIQRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNRLFPPLRQRQNVNYQGGRQSEPAAPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH", "length": 344 }, "evidence": [ { "id": "A0A287AHQ1", "url": "https://omabrowser.org/oma/group/A0A287AHQ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R1K1-1", "protein_name": "Ubiquitin-associated domain-containing protein 2", "gene_name": "Ubac2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFTSTGSSGLYKAPLSKSLLLVPSALSLLLTLLLPHCQKFFVYDLHAVKHDLQIWRLICGRIICLDLKDAFCSGLLIYNFRIFERRYGSRKFASFLLGSWVLSALFDFILVEAVQYSLGVTVASNLPSGFLAPVFALFVPFHCSIPRVQVAQILGPLSITNKTLIYILGLQLFTSGSYIWIVAMSGLISGMCYDRKVLQVHQVLRIPGRMAEFFSWALEPIFSSSEPTSEARVGMGATVDIQRQQRMEQLDRQLMLSQFAQVRRQRQQQGGMINWNRLFPPLRQRRNINYQDGPRSEQRASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH", "length": 345 }, "evidence": [ { "id": "A0A287AHQ1", "url": "https://omabrowser.org/oma/group/A0A287AHQ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LET3-1", "protein_name": "Rhomboid-like protein 20", "gene_name": "RBL20", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNGGPSGFHNAPVTKAFVITSALFTVFFGIQGRSSKLGLSYQDIFEKFRIWKLIMSTFAFSSTPELMFGLYLLYYFRVFERQIGSNKYSVFILFSGTVSLLLEVILLSLLKDTTANLLTSGPYGLIFASFIPFYLDIPVSTRFRVFGVNFSDKSFIYLAGVQLLLSSWKRSIFPGICGIIAGSLYRLNILGIRKAKFPEFVASFFSRLSFPSFGNSPPPAPSRNIVGTISPNTGRRAERSQPAPLPSSVEPSEEAITTLVSMGFDRNAARQALVHARNDVNAATNILLEAQSH", "length": 293 }, "evidence": [ { "id": "A0A287AHQ1", "url": "https://omabrowser.org/oma/group/A0A287AHQ1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHQ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ1" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHQ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHQ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of canonical Wnt signaling pathway", "id": "GO:0090090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090090", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHQ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ1" } ], "pmid": "" }, { "name": "negative regulation of retrograde protein transport, ER to cytosol", "id": "GO:1904153", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904153", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHQ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 161, "end_pos": 163, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AHQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHQ1" }, { "id": "PS50030", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50030" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBA", "eco_id": "ECO_0000259", "start_pos": 305, "end_pos": 345, "start_aa": "Glu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 161, "end_pos": 163 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AHT2-1", "uniprot_ac": "A0A287AHT2", "uniprot_id": "A0A287AHT2_PIG", "mass": { "chemical_mass": 15353.0, "monoisotopic_mass": 15353.0 }, "refseq": { "ac": "XP_020921948", "name": "zinc finger SWIM domain-containing protein 7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921948" }, "gene_names": [ { "name": "ZSWIM7", "type": "recommended", "evidence": [ { "id": "A0A287AHT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT2" } ] }, { "name": "ZSWIM7", "type": "synonym", "evidence": [ { "id": "XP_020921948", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921948" } ] } ], "protein_names": [ { "name": "Zinc finger SWIM-type containing 7", "type": "synonym", "evidence": [ { "id": "A0A287AHT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT2/entry#names_and_taxonomy" } ] }, { "name": "zinc finger SWIM domain-containing protein 7", "type": "synonym", "evidence": [ { "id": "XP_020921948", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921948" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AHT2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZSWIM7", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT2", "locus": { "chromosome": "12", "start_pos": 59436604, "end_pos": 59418924, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036482", "url": "https://www.ensembl.org/id/ENSSSCG00000036482" } ] } } ], "crossref": [ { "id": "ENSSSCG00000036482", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036482", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100625779", "url": "https://www.ncbi.nlm.nih.gov/gene/100625779", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100625779", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625779", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YTCYTSC", "url": "https://omabrowser.org/oma/group/YTCYTSC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AHT2", "url": "https://www.orthodb.org/?gene=A0A287AHT2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28498", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28498", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28498:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28498:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04434", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04434", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020921948", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921948", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AHT2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVAAGVPTLPAVVEELLSEMAAAVRDGAPISDEHLLSLKFVFGSSAVQALDLVDRKSITLISSPSGRRVYQVLGSSGKTYTCLASCHYCSCPAFAFSVLRKGDSLLCKHLLAVYLSQVLGTCQQLSVSDKQLTDLLMERTQDA", "length": 144, "header": "tr|A0A287AHT2-1|A0A287AHT2_PIG Isoform 1 of Zinc finger SWIM-type containing 7 OS=Sus scrofa OX=9823 GN=ZSWIM7 PE=4 SV=1 CANONICAL=A0A287AHT2-1" }, "isoforms": [ { "isoform_ac": "A0A287AHT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT2/entry#A0A287AHT2-1", "sequence": { "sequence": "MAVAAGVPTLPAVVEELLSEMAAAVRDGAPISDEHLLSLKFVFGSSAVQALDLVDRKSITLISSPSGRRVYQVLGSSGKTYTCLASCHYCSCPAFAFSVLRKGDSLLCKHLLAVYLSQVLGTCQQLSVSDKQLTDLLMERTQDA", "length": 144, "header": "tr|A0A287AHT2-1|A0A287AHT2_PIG Isoform 1 of Zinc finger SWIM-type containing 7 OS=Sus scrofa OX=9823 GN=ZSWIM7 PE=4 SV=1 CANONICAL=A0A287AHT2-1" }, "locus": { "chromosome": "12", "start_pos": 59430489, "end_pos": 59418952, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042874.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042874.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043428.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043428.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHT2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625779", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625779", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AV25-1", "protein_name": "Zinc finger, SWIM-type containing 7", "gene_name": "Zswim7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTRPHSSTSRGWPGTPRLSACAMTRDDVTPPRPAFGLPRAKSSQPTGREVVRRAMAVTLPEVVEELLSEIAAAVRDSARIPDELLLSLKFVFGSSAIQALDLVDRESVTLISSPSGRRVYQVLGSSGTTYTCLASCHYCSCPAFSFSVLRKSDSLLCKHLLAIYLSQLLRNCQQLSVSDKQLTDLLLMERTQEA", "length": 195 }, "evidence": [ { "id": "A0A287AHT2", "url": "https://omabrowser.org/oma/group/A0A287AHT2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A4FVI0-1", "protein_name": "Zinc finger SWIM domain-containing 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"protein_name": "Zinc finger SWIM domain-containing protein 7 homolog", "gene_name": "zswim7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATTINTSNKNTVKLLDILKIIFENNKTNTISEETLLSLYYIFDQTIFASLELIDKELITKYVFQPSNRYFYVVEGRKGAKYMCLIQGDYCSCPSFNFSVLLKSDSVYCKHQISSILAEIISNVKVIEFDDSEYQSQILSIESLSFKTPTHKFQQK", "length": 156 }, "evidence": [ { "id": "A0A287AHT2", "url": "https://omabrowser.org/oma/group/A0A287AHT2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9CWQ2-1", "protein_name": "Zinc finger SWIM domain-containing protein 7", "gene_name": "Zswim7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVALPEVVEELLSEMAAAVRDSARIPDELLLSLEFVFGSSAIQALDLVDRESVTLISSPSGRRVYQVLGSSGKTYTCLASCHYCSCPAFSFSVLRKSDSLLCKHLLAIYLSQLLRNCQQLHVSDKQLTDLLMEDTRRIKGAAGTWTSKTEA", "length": 152 }, "evidence": [ { "id": "A0A287AHT2", "url": "https://omabrowser.org/oma/group/A0A287AHT2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHT2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein stabilization", "id": "GO:0050821", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050821", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHT2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT2" } ], "pmid": "" }, { "name": "double-strand break repair via homologous recombination", "id": "GO:0000724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000724", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHT2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Shu complex", "id": "GO:0097196", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097196", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHT2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AHT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHT2" }, { "id": "PS50966", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50966" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SWIM-type", "eco_id": "ECO_0000259", "start_pos": 81, "end_pos": 119, "start_aa": "Tyr", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939405" } ] } ], "protein_names": [ { "name": "Zinc finger protein 709-like", "type": "recommended", "evidence": [ { "id": "A0A287AHV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 709-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020939405", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939405" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHV5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381:SF427", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381:SF427", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020939405", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939405", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AHV5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSVVFEDVAVNFTLEEWALLDLSQKKLYRDVMRETLRNLALVGRKWEGHAIEDEYKNPGRKPRNLVVRRLCENREGSPPGENLSLIPSLSLNQKTPGVKPHPCSACGKGFMHRSSLNRHIKCHTEPKPDECWKYGEKPYTCKEDGTAFSYLQVSEKHEGNHSGKEIYTCTEGGRAFMCLRSFQRHKVMHTGNVPHRCKECGKTFTSSDSLQIHERTHTREKSYPCIQCGRTYRSHHNFQAHLRTHIERKPFECKKCCKVFICPRSLWKHERIHSEEKPYTCRECGKAFHSLVDFQVHERSHTGEKPYRCEKCSKAFSRPSYLRKHERRHIKGKTYDCKHCGKAFRDHQFLEKHGRTHTGEKPYECKQCIKAFSYYYSLKIHVRTHTGERPYKCTECGKAYRYLSSLQTHQSIHTGEIPYECKQCGKALISRRGFQLHVRNHTGEKPYECEKCHKTFSCSSYLRRHERIHSVEKPYECKDCGKAFIWYTSYQRHTKIHSGEKPYECTQCSKAFVCPSYLRKHEKTHARRKRYVCKQCGKAFSFHRSLQTHENTHTGEKTYKCKHCGKAFNYNCSLQTHGKTHAGEKPYKCGKASLCCPNCLRRVRVHRGKNHINVKNMRKPVVILIPLEGTERLTG", "length": 636, "header": "tr|A0A287AHV5-1|A0A287AHV5_PIG Isoform 1 of Zinc finger protein 709-like OS=Sus scrofa OX=9823 GN=LOC100517751 PE=3 SV=1 CANONICAL=A0A287AHV5-1" }, "isoforms": [ { "isoform_ac": "A0A287AHV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5/entry#A0A287AHV5-1", "sequence": { "sequence": "MDSVVFEDVAVNFTLEEWALLDLSQKKLYRDVMRETLRNLALVGRKWEGHAIEDEYKNPGRKPRNLVVRRLCENREGSPPGENLSLIPSLSLNQKTPGVKPHPCSACGKGFMHRSSLNRHIKCHTEPKPDECWKYGEKPYTCKEDGTAFSYLQVSEKHEGNHSGKEIYTCTEGGRAFMCLRSFQRHKVMHTGNVPHRCKECGKTFTSSDSLQIHERTHTREKSYPCIQCGRTYRSHHNFQAHLRTHIERKPFECKKCCKVFICPRSLWKHERIHSEEKPYTCRECGKAFHSLVDFQVHERSHTGEKPYRCEKCSKAFSRPSYLRKHERRHIKGKTYDCKHCGKAFRDHQFLEKHGRTHTGEKPYECKQCIKAFSYYYSLKIHVRTHTGERPYKCTECGKAYRYLSSLQTHQSIHTGEIPYECKQCGKALISRRGFQLHVRNHTGEKPYECEKCHKTFSCSSYLRRHERIHSVEKPYECKDCGKAFIWYTSYQRHTKIHSGEKPYECTQCSKAFVCPSYLRKHEKTHARRKRYVCKQCGKAFSFHRSLQTHENTHTGEKTYKCKHCGKAFNYNCSLQTHGKTHAGEKPYKCGKASLCCPNCLRRVRVHRGKNHINVKNMRKPVVILIPLEGTERLTG", "length": 636, "header": "tr|A0A287AHV5-1|A0A287AHV5_PIG Isoform 1 of Zinc finger protein 709-like OS=Sus scrofa OX=9823 GN=LOC100517751 PE=3 SV=1 CANONICAL=A0A287AHV5-1" }, "locus": { "chromosome": "2", "start_pos": 66848480, "end_pos": 66829351, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045265.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045265.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043460.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043460.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHV5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517751", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517751", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AGB5-1", "protein_name": "RIKEN cDNA 2010315B03 gene like", "gene_name": "2010315B03Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLANNTAQQCHLFPAFLLSFAYLPEWALLNPSQKSLYKDVMLETYKNLTAIGYNWEDHYIEEEFQSSRRYGRHETGYTGEKPYECTHYGTGFASHGHLQRHKGTYTGEKPYECKQCGKAFAWNCHLQIHKRTHTGEKPYECDQCGTAFASHGHLQRHKRTHTGEKPYECNQCGKAFSQHSSLQVHKRTHTGEKPYECNQCGKAYARHSHLQRHKRTHTGEKPYECNQCGKAFAYHNSLQYHTRTHTGEKSYECKQCGKVFVCRDHLQIHKRTHAGQKRYECKQCGKVFAFHSHFQRHKRHIGEKPYECNQCDKAFASHNNLQKHIKRHTGEKSYKCNQCDKTYAHYSHLQTHKRIHTGEKPYKCNQCGKAFSQHSSLQVHKRTHTGEKPYECNQCGKSYARHSHLQRHKRTHTGEKPYQCNHCGKAFAYYNSLQYHKRAHTREKSYKCNQCDKAFASHSNLQKHIRHTGDYKCNQCVKTFTHHSHLQRHKRTHTGEKPYECNQFGKIVAQHSTFHSIKKAHMGWRDGSVVKSTECSSRGPEFNSQLPHGGSQPSVMESEALFWCA", "length": 565 }, "evidence": [ { "id": "A0A287AHV5", "url": "https://omabrowser.org/oma/group/A0A287AHV5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "J3QK55-1", "protein_name": "RIKEN cDNA 2010315B03 gene", "gene_name": "2010315B03Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNAMTYADVHVNFTWEEWALLNPSQKSLYKEVMLETYENLTAIGYNWEDHYIEEQFQSSRRDGRHKRGHTGEKPYECNHCGTAFARHGHLQRHKGTHTGEKLYECNRCGKVFAWNCHLRIHKRTHSGEKPYECDQCGTAFASHCRLQRHKRTHTGEKPYECNQCGKAFTQHSTLQVHKRTHTGEKPYECSQCGKAYSRHSHLQRHKRTHTGEKPYVCNQCGKAFAYQNSLQYHKRTHTGEKSYECKQCGKFFPCRKHLQIHKRTHAGQKGYECNKCGKAFAFHSHFQRHKRHIGEKPYECNHCDKAFASHNNLQKHIRRHTGEKPYKCNLCDKAYAHHSHLQTHERVHTEEKPYKCNQCDKAFSQQSSLQVHKRIHTGEKPYECNQCGKAFTCHRYLQRHKRTHTGEKPYECNQFGKIFAQHSTVHSIKKGNI", "length": 433 }, "evidence": [ { "id": "A0A287AHV5", "url": "https://omabrowser.org/oma/group/A0A287AHV5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHV5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHV5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHV5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHV5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHV5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHV5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 161, "end_pos": 163, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 572, "end_pos": 574, "annotation": "n_glycosylation_sequon" }, { "start_pos": 83, "end_pos": 85, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AHV5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 636, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AHV5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AHV5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AHV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 102, "end_pos": 129, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AHV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV5" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 79, "start_aa": "Val", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 161, "end_pos": 163 }, { "start_pos": 441, "end_pos": 443 }, { "start_pos": 572, "end_pos": 574 }, { "start_pos": 83, "end_pos": 85 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AHX5-1", "uniprot_ac": "A0A287AHX5", "uniprot_id": "A0A287AHX5_PIG", "mass": { "chemical_mass": 62490.0, "monoisotopic_mass": 62490.0 }, "refseq": { "ac": "XP_020937026", "name": "serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937026" }, "gene_names": [ { "name": "PPP2R3B", "type": "recommended", "evidence": [ { "id": "A0A287AHX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5" } ] }, { "name": "PPP2R3B", "type": "synonym", "evidence": [ { "id": "XP_020937026", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937026" } ] } ], "protein_names": [ { "name": "Protein phosphatase 2 regulatory subunit B''beta", "type": "synonym", "evidence": [ { "id": "A0A287AHX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X4", "type": "synonym", "evidence": [ { "id": "XP_020937026", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937026" } ] } ], "function": [ { "annotation": "The B regulatory subunit might modulate substrate selectivity and catalytic activity, and might also direct the localization of the catalytic enzyme to a particular subcellular compartment.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHX5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5#function" }, { "database": "UniProtKB", "id": "ARBA00093310", "url": "https://www.uniprot.org/uniprotkb/ARBA00093310#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AHX5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPP2R3B", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000032029", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032029", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21507", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21507", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110258189", "url": "https://www.ncbi.nlm.nih.gov/gene/110258189", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041534", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041534", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048855", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048855", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14095", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14095", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14095:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14095:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17958", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17958", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21161", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21161", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-113501", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-113501", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69231", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69231", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69273", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69273", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020937026", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937026", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AHX5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERAEHGRPDRPEPAGPGQPQPRERARPGPRRPMRGDMRLRDLSLRQDPDLRQELASLARGCDFVLPSRFKKRLKAFQQVQTKKEEPLPPAASQSIPAFYFPRGRPQDTVNIDAVIAKIERTFAQFPHERATMEDMGRVAKACGCPLYWKGPLFCGAGGERTGSVSVHKFVAMWRKVLQNCHDDAAKFVHLLMNPGCNYLVQEDFIPFLQDVVNTHPGLAFLKEASEFHSRYITTVIQRIFYTVNRSWSGRITCAELRRSSFLQNVALLEEEADINQLTEFFSYEHFYVIYCKFWELDTDHDLLIDAQDLARHNDHAISSRMIDRIFSGAVTRGKKVQKGGKISYADFVWFLISEEDKKTPTSIEYWFRCMDLDGDGALSMFELEYFYEEQCRRLDSMAIEALPFEDCLCQMLDLVKPQSEGRITLSDLKRCKLAGVFFDTFFNIEKYLDHEQREQASLLRESDSEGPELSDWERYAAEEYDLLVAEEAVGEPWEDGYDAELSPVDQKLSALRSPLAQRPFFETPSGLGTVDLYECGDDDLQPS", "length": 544, "header": "tr|A0A287AHX5-1|A0A287AHX5_PIG Isoform 1 of Protein phosphatase 2 regulatory subunit B''beta OS=Sus scrofa OX=9823 GN=PPP2R3B PE=4 SV=1 CANONICAL=A0A287AHX5-1" }, "isoforms": [ { "isoform_ac": "A0A287AHX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5/entry#A0A287AHX5-1", "sequence": { "sequence": "MERAEHGRPDRPEPAGPGQPQPRERARPGPRRPMRGDMRLRDLSLRQDPDLRQELASLARGCDFVLPSRFKKRLKAFQQVQTKKEEPLPPAASQSIPAFYFPRGRPQDTVNIDAVIAKIERTFAQFPHERATMEDMGRVAKACGCPLYWKGPLFCGAGGERTGSVSVHKFVAMWRKVLQNCHDDAAKFVHLLMNPGCNYLVQEDFIPFLQDVVNTHPGLAFLKEASEFHSRYITTVIQRIFYTVNRSWSGRITCAELRRSSFLQNVALLEEEADINQLTEFFSYEHFYVIYCKFWELDTDHDLLIDAQDLARHNDHAISSRMIDRIFSGAVTRGKKVQKGGKISYADFVWFLISEEDKKTPTSIEYWFRCMDLDGDGALSMFELEYFYEEQCRRLDSMAIEALPFEDCLCQMLDLVKPQSEGRITLSDLKRCKLAGVFFDTFFNIEKYLDHEQREQASLLRESDSEGPELSDWERYAAEEYDLLVAEEAVGEPWEDGYDAELSPVDQKLSALRSPLAQRPFFETPSGLGTVDLYECGDDDLQPS", "length": 544, "header": "tr|A0A287AHX5-1|A0A287AHX5_PIG Isoform 1 of Protein phosphatase 2 regulatory subunit B''beta OS=Sus scrofa OX=9823 GN=PPP2R3B PE=4 SV=1 CANONICAL=A0A287AHX5-1" }, "locus": { "chromosome": "AEMK02000569.1", "start_pos": 158163, "end_pos": 91470, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036813.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036813.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043485.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043485.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 332, "start_aa": "Thr", "end_pos": 332, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr332", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHX5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-113501", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-113501", "resource": "Reactome", "description": "Inhibition of replication initiation of damaged DNA by RB1/E2F1" }, { "id": "R-SSC-69231", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69231", "resource": "Reactome", "description": "Cyclin D associated events in G1" }, { "id": "R-SSC-69273", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69273", "resource": "Reactome", "description": "Cyclin A/B1/B2 associated events during G2/M transition" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHX5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5" } ], "pmid": "" }, { "name": "protein phosphatase type 2A complex", "id": "GO:0000159", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000159", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHX5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHX5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5" } ], "pmid": "" }, { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHX5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 245, "end_pos": 247, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AHX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHX5" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 359, "end_pos": 394, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 332 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 245, "end_pos": 247 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AHY5-1", "uniprot_ac": "A0A287AHY5", "uniprot_id": "A0A287AHY5_PIG", "mass": { "chemical_mass": 68331.0, "monoisotopic_mass": 68331.0 }, "refseq": {}, "gene_names": [ { "name": "RAVER2", "type": "recommended", "evidence": [ { "id": "A0A287AHY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5" } ] } ], "protein_names": [ { "name": "Ribonucleoprotein PTB-binding 1", "type": "recommended", "evidence": [ { "id": "A0A287AHY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5/entry#names_and_taxonomy" } ] }, { "name": "Protein raver-1", "type": "synonym", "evidence": [ { "id": "A0A287AHY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Cooperates with PTBP1 to modulate regulated alternative splicing events. Promotes exon skipping. Cooperates with PTBP1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHY5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5#function" }, { "database": "UniProtKB", "id": "ARBA00058259", "url": "https://www.uniprot.org/uniprotkb/ARBA00058259#function" }, { "database": "UniProtKB", "id": "A0A287BSP5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSP5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AHY5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAVER2", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5", "locus": { "chromosome": "6", "start_pos": 147567182, "end_pos": 147722407, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025672", "url": "https://www.ensembl.org/id/ENSSSCG00000025672" } ] } } ], "crossref": [ { "id": "A0A287AHY5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AHY5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025672", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025672", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12664", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12664", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12666", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12666", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12668", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12668", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23189", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23189", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48025", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48025", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48025:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48025:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AHY5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSP5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSP5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRELSNRRKILVKNLPQDSNCQEVHDLLQDYELKYCYVDRNKRTAFVTLLNGEQAQKAIQTFHQYSFRGKDLIVQLQPTDALLCITNLPTSFTLEEFEELVRAYGNIERCFLVYSEVTGCSKGYGFVEYMKKDFAAKARLELLGKQLGASALFAQWMDVNLLAAELIHSKCLCVDKLPSDYRDSEELLQFFSSIHKPVFCQLAQDEGSYVGGFAVVEYSTAEHAEEVQQAADGLTIKGSKVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQLCGRTVKPAVLGTPHSLPPLMNPSISPAFLHLNKAHQSSLMGNTSNLFLQNLSTVPLAQQQLMKFEKIHTNNKPGLLGDPPAMVLHTAVGIGSPLPLKTELGHLGEAHKTSNLIPTQTTVTPGMGLLPFLPNQHVAGQTGPGPGNTQDKQPAVVGLAEGSLSGSQAYLQNFPNLTAGGLLMGHHKQQQSQTKSTEAASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPASKTTLQKTGIAGNILEAISQGNESQHTLEKCIVYSPPFGDYAQVSSLRNEKRGSSYLVSAPESGSVEFVDQHSQGTGAYYMETYLKKKRVY", "length": 626, "header": "tr|A0A287AHY5-1|A0A287AHY5_PIG Isoform 1 of Ribonucleoprotein PTB-binding 1 OS=Sus scrofa OX=9823 GN=RAVER2 PE=4 SV=2 CANONICAL=A0A287AHY5-1" }, "isoforms": [ { "isoform_ac": "A0A287AHY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5/entry#A0A287AHY5-1", "sequence": { "sequence": "MRRELSNRRKILVKNLPQDSNCQEVHDLLQDYELKYCYVDRNKRTAFVTLLNGEQAQKAIQTFHQYSFRGKDLIVQLQPTDALLCITNLPTSFTLEEFEELVRAYGNIERCFLVYSEVTGCSKGYGFVEYMKKDFAAKARLELLGKQLGASALFAQWMDVNLLAAELIHSKCLCVDKLPSDYRDSEELLQFFSSIHKPVFCQLAQDEGSYVGGFAVVEYSTAEHAEEVQQAADGLTIKGSKVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQLCGRTVKPAVLGTPHSLPPLMNPSISPAFLHLNKAHQSSLMGNTSNLFLQNLSTVPLAQQQLMKFEKIHTNNKPGLLGDPPAMVLHTAVGIGSPLPLKTELGHLGEAHKTSNLIPTQTTVTPGMGLLPFLPNQHVAGQTGPGPGNTQDKQPAVVGLAEGSLSGSQAYLQNFPNLTAGGLLMGHHKQQQSQTKSTEAASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPASKTTLQKTGIAGNILEAISQGNESQHTLEKCIVYSPPFGDYAQVSSLRNEKRGSSYLVSAPESGSVEFVDQHSQGTGAYYMETYLKKKRVY", "length": 626, "header": "tr|A0A287AHY5-1|A0A287AHY5_PIG Isoform 1 of Ribonucleoprotein PTB-binding 1 OS=Sus scrofa OX=9823 GN=RAVER2 PE=4 SV=2 CANONICAL=A0A287AHY5-1" }, "locus": { "chromosome": "6", "start_pos": 147722026, "end_pos": 147569306, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050562.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050562.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043606.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043606.2" } ] } }, { "isoform_ac": "A0A287BSP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5/entry#A0A287BSP5-1", "sequence": { "sequence": "MAAAGGGGGGGEGGAGLGGAAGPQPGSGRPGPGPSAEARDDVRGPAPAPLQPEEVAARLQRMRRELSNRRKILVKNLPQDSNCQEVHDLLQDYELKYCYVDRNKRTAFVTLLNGEQAQKAIQTFHQYSFRGKDLIVQLQPTDALLCITNLPTSFTLEEFEELVRAYGNIERCFLVYSEVTGCSKGYGFVEYMKKDFAAKARLELLGKQLGASALFAQWMDVNLLAAELIHSKCLCVDKLPSDYRDSEELLQFFSSIHKPVFCQLAQDEGSYVGGFAVVEYSTAEHAEEVQQAADGLTIKGSKVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQLCGRTVKPAVLGTPHSLPPLMNPSISPAFLHLNKAHQSSLMGNTSNLFLQNLSTVPLAQQQLMKFEKIHTNNKPGLLGDPPAMVLHTAVGIGSPLPLKTELGHLGEAHKTSNLIPTQTTVTPGMGLLPFLPNQHVAGQTGPGPGNTQDKQPAVVGLAEGSLSGSQAYLQNFPNLTAGGLLMGHHKQQQSQTKSTEVSSGAASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPASKTTLQKTGIAGNILEAISQGNESQHTLEKCIVYSPPFGDYAQVSSLRNEKRGSSYLVSAPESGSVEFVDQHSQGTGAYYMETYLKKKRVY", "length": 691, "header": "tr|A0A287BSP5-1|A0A287BSP5_PIG Computationally mapped isoform of Ribonucleoprotein PTB-binding 1 OS=Sus scrofa OX=9823 GN=RAVER2 PE=4 SV=1 CANONICAL=A0A287AHY5-1" }, "locus": { "chromosome": "6", "start_pos": 147722209, "end_pos": 147569306, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042459.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042459.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059468.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059468.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 421, "start_aa": "Thr", "end_pos": 421, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr421", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHY5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHY5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHY5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHY5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 351, "end_pos": 353, "annotation": "n_glycosylation_sequon" }, { "start_pos": 473, "end_pos": 475, "annotation": "n_glycosylation_sequon" }, { "start_pos": 500, "end_pos": 502, "annotation": "n_glycosylation_sequon" }, { "start_pos": 557, "end_pos": 559, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AHY5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 626, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AHY5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AHY5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AHY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY5" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 80, "start_aa": "Arg", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 421 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 343, "end_pos": 345 }, { "start_pos": 351, "end_pos": 353 }, { "start_pos": 473, "end_pos": 475 }, { "start_pos": 500, "end_pos": 502 }, { "start_pos": 557, "end_pos": 559 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AHY9-1", "uniprot_ac": "A0A287AHY9", "uniprot_id": "A0A287AHY9_PIG", "mass": { "chemical_mass": 58688.0, "monoisotopic_mass": 58688.0 }, "refseq": { "ac": "XP_020934442", "name": "zinc finger protein 775", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934442" }, "gene_names": [ { "name": "ZNF775", "type": "recommended", "evidence": [ { "id": "A0A287AHY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY9" } ] }, { "name": "ZNF775", "type": "synonym", "evidence": [ { "id": "XP_020934442", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934442" } ] } ], "protein_names": [ { "name": "Zinc finger protein 775", "type": "synonym", "evidence": [ { "id": "A0A287AHY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY9/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 775", "type": "synonym", "evidence": [ { "id": "XP_020934442", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934442" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHY9", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY9#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AHY9", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF775", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY9", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000037391", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037391", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110257534", "url": "https://www.ncbi.nlm.nih.gov/gene/110257534", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110257534", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257534", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GGWEEAQ", "url": "https://omabrowser.org/oma/group/GGWEEAQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AHY9", "url": "https://www.orthodb.org/?gene=A0A287AHY9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379:SF127", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379:SF127", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020934442", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934442", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AHY9", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESGLAGGSPGDGLVMKIKQEKSEWLPQALVPQAALSQKDKENIFQQHRGLPPCQTTGKPRALGGQEETGGPRWAPPAEQDEGPAGRAPGAAPGPLSPALSAGEGHFVCLDCGKRFSWWSSLKIHQRTHTGEKPYLCGKCGKSFSQKPNLARHQRHHTGERPFCCPECARRFSQKQHLLKHQKIHSRPTAHPCPECERCFRHQVGLRIHQRAHARDRQGARSGLQALLRDAASRRGCRLRPGPQRGRPEWAWLGLCQGWWRQPGPRTSAPSEPRQFICNECGKSFTWWSSLNIHQRIHTGERPYPCPECGRRFSQKPNLTRHLRNHTGERPHPCSHCGRSFRQKQHLLKHQRTHLPGAPAARRPGCAQSCPGRAALWAHPRAHLAPAAPAPPPPPAPPALGAPGLSPPPRAPAPAGAPGDMLWGRARAGGPGEPRQFICNECGKSFSWWSALTIHQRIHTGERPYPCPECGRCFSQKPNLTRHRRNHTGERPYLCAACGRGFSQKQHLLKHQRVHRGSLVPTPSAKGEAL", "length": 530, "header": "tr|A0A287AHY9-1|A0A287AHY9_PIG Isoform 1 of Zinc finger protein 775 OS=Sus scrofa OX=9823 GN=ZNF775 PE=3 SV=1 CANONICAL=A0A287AHY9-1" }, "isoforms": [ { "isoform_ac": "A0A287AHY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY9/entry#A0A287AHY9-1", "sequence": { "sequence": "MESGLAGGSPGDGLVMKIKQEKSEWLPQALVPQAALSQKDKENIFQQHRGLPPCQTTGKPRALGGQEETGGPRWAPPAEQDEGPAGRAPGAAPGPLSPALSAGEGHFVCLDCGKRFSWWSSLKIHQRTHTGEKPYLCGKCGKSFSQKPNLARHQRHHTGERPFCCPECARRFSQKQHLLKHQKIHSRPTAHPCPECERCFRHQVGLRIHQRAHARDRQGARSGLQALLRDAASRRGCRLRPGPQRGRPEWAWLGLCQGWWRQPGPRTSAPSEPRQFICNECGKSFTWWSSLNIHQRIHTGERPYPCPECGRRFSQKPNLTRHLRNHTGERPHPCSHCGRSFRQKQHLLKHQRTHLPGAPAARRPGCAQSCPGRAALWAHPRAHLAPAAPAPPPPPAPPALGAPGLSPPPRAPAPAGAPGDMLWGRARAGGPGEPRQFICNECGKSFSWWSALTIHQRIHTGERPYPCPECGRCFSQKPNLTRHRRNHTGERPYLCAACGRGFSQKQHLLKHQRVHRGSLVPTPSAKGEAL", "length": 530, "header": "tr|A0A287AHY9-1|A0A287AHY9_PIG Isoform 1 of Zinc finger protein 775 OS=Sus scrofa OX=9823 GN=ZNF775 PE=3 SV=1 CANONICAL=A0A287AHY9-1" }, "locus": { "chromosome": "18", "start_pos": 55953608, "end_pos": 55943542, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053291.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053291.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043484.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043484.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 522, "start_aa": "Thr", "end_pos": 522, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr522", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AHY9", "url": "https://www.uniprot.org/uniprotkb/A0A287AHY9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110257534", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257534", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AAN4-1", "protein_name": "Zinc finger protein 775", "gene_name": "Zfp775", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"MARLLMLFNLRCGDDEFLRALRTNSFELSCTGSTILESATRSSRRCVCYSVRSGAVTPRTPAPALSSAKCACAETAREKVLPPSNTSEEMAVREAAVGLPGFGREEEAALLFERAHYRHDPRWLLPVPPRLCLACALELLPEPGVSLVRKKHVLSCFRDALMRHASLVMQLVAQDQRICIHFISMLFGLLCNVEDGSITDLCIEVLIQLTTQLKLEQAIHYLLDECHKELCNMPSMRGSLATLTLLGKLVDAIPALADKLVMEHSDLMEHLLRGLVYPNEGVQASVCYLYGKLYSSPVAAEMLLGHFREKLCPVFLSTMHGAQSKELQINCLGLLRQLLKYDLFVSMIMSKSALAESTESAEGPPGETSLPLVLKKLLLSRDETLQVASAHCITAVLVHSPAKHAPAFLHADIPEFLFEHLSSSSEVLVWSSYNCLILLAEEPLFFSKCHTVYGIESVVRSLHGSLRMNNTELHKQGLLLFAEILTRQPEEIKLFTSSAMCRDAGRALQEALSSPVLEVAAEAVRATSAFLRKDHQSALPVLYKELQALLEAMLSRCADFSQTPLNWRPTGHASNRDSEKAILRRGNFLLSTLEGFRNACRLAVEFQNEPSAQENPFTAPGAENEDTLEAFSEFLLSACDSLCIPMVMRYSEQATNPALMEVFLSILHSLFVVVPHMKEKFSRKLELSAVSELLQHGLPQISSRSPESLAFLSDRQYMEGAARQKQYCILLLFYLAYIHEDRFVSEAELFMAVQSFLLSLQDQGERPPLVVFRASVYLLATCQDKDGALDEAVASAIRKFLEWVPDLHLVYTHHPHLLRLFLLYPELMSRFGHRVLDLWFSWEESSYEELDDVSSGGQPTLPASLAVLFHILRSSPSILLILLDLIYSSPVDTARKVLIILRAFLRRNVDVQVGGLIRGHFLLILQHLLLEHGSSPSGASGNLPLLLSLLSLVQLRNESEQELDSMAMKLLHQVSKLCGKCSPTDTDILQPSFNFLYWSLHQTTLGSQKRAAAVLLSNTALIELLEKMLALTWAEEGSPGTTLLCSAWLLTASFSALQHSGGLQVHQMLSVELDQVLKALSFPKKKAALLSASILCFLRTTLQQSFSSPLVTLLPSGAQPPPAPEDTVLSPLGTSQVLSLIIGLQNLLVQKDPLLSHACVGCLEALLDYLHARSPDVALHVASQPWNRFLLFTLLDAGENSFLRPEILRLMTLFVRFRSSSILSREEVGHVLQGAALADLSTLSDATLQALRGFFLQVQSMGLLADHSMAQTLRASLQGLSPRASMVQPPLQDMLCLEGVAVSLSHIRD", "length": 1309, "header": "tr|A0A287AI21-1|A0A287AI21_PIG Isoform 1 of Meiotic double-stranded break formation protein 1 OS=Sus scrofa OX=9823 GN=MEI1 PE=4 SV=3 CANONICAL=A0A287AI21-1" }, "isoforms": [ { "isoform_ac": "A0A287AI21-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AI21/entry#A0A287AI21-1", "sequence": { "sequence": "MARLLMLFNLRCGDDEFLRALRTNSFELSCTGSTILESATRSSRRCVCYSVRSGAVTPRTPAPALSSAKCACAETAREKVLPPSNTSEEMAVREAAVGLPGFGREEEAALLFERAHYRHDPRWLLPVPPRLCLACALELLPEPGVSLVRKKHVLSCFRDALMRHASLVMQLVAQDQRICIHFISMLFGLLCNVEDGSITDLCIEVLIQLTTQLKLEQAIHYLLDECHKELCNMPSMRGSLATLTLLGKLVDAIPALADKLVMEHSDLMEHLLRGLVYPNEGVQASVCYLYGKLYSSPVAAEMLLGHFREKLCPVFLSTMHGAQSKELQINCLGLLRQLLKYDLFVSMIMSKSALAESTESAEGPPGETSLPLVLKKLLLSRDETLQVASAHCITAVLVHSPAKHAPAFLHADIPEFLFEHLSSSSEVLVWSSYNCLILLAEEPLFFSKCHTVYGIESVVRSLHGSLRMNNTELHKQGLLLFAEILTRQPEEIKLFTSSAMCRDAGRALQEALSSPVLEVAAEAVRATSAFLRKDHQSALPVLYKELQALLEAMLSRCADFSQTPLNWRPTGHASNRDSEKAILRRGNFLLSTLEGFRNACRLAVEFQNEPSAQENPFTAPGAENEDTLEAFSEFLLSACDSLCIPMVMRYSEQATNPALMEVFLSILHSLFVVVPHMKEKFSRKLELSAVSELLQHGLPQISSRSPESLAFLSDRQYMEGAARQKQYCILLLFYLAYIHEDRFVSEAELFMAVQSFLLSLQDQGERPPLVVFRASVYLLATCQDKDGALDEAVASAIRKFLEWVPDLHLVYTHHPHLLRLFLLYPELMSRFGHRVLDLWFSWEESSYEELDDVSSGGQPTLPASLAVLFHILRSSPSILLILLDLIYSSPVDTARKVLIILRAFLRRNVDVQVGGLIRGHFLLILQHLLLEHGSSPSGASGNLPLLLSLLSLVQLRNESEQELDSMAMKLLHQVSKLCGKCSPTDTDILQPSFNFLYWSLHQTTLGSQKRAAAVLLSNTALIELLEKMLALTWAEEGSPGTTLLCSAWLLTASFSALQHSGGLQVHQMLSVELDQVLKALSFPKKKAALLSASILCFLRTTLQQSFSSPLVTLLPSGAQPPPAPEDTVLSPLGTSQVLSLIIGLQNLLVQKDPLLSHACVGCLEALLDYLHARSPDVALHVASQPWNRFLLFTLLDAGENSFLRPEILRLMTLFVRFRSSSILSREEVGHVLQGAALADLSTLSDATLQALRGFFLQVQSMGLLADHSMAQTLRASLQGLSPRASMVQPPLQDMLCLEGVAVSLSHIRD", "length": 1309, "header": "tr|A0A287AI21-1|A0A287AI21_PIG Isoform 1 of Meiotic double-stranded break formation protein 1 OS=Sus scrofa OX=9823 GN=MEI1 PE=4 SV=3 CANONICAL=A0A287AI21-1" }, "locus": { "chromosome": "5", "start_pos": 6870837, "end_pos": 6801131, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053183.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053183.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043548.3", "url": "https://www.ensembl.org/id/ENSSSCP00000043548.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 57, "start_aa": "Thr", "end_pos": 57, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr57", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AI21", "url": "https://www.uniprot.org/uniprotkb/A0A287AI21" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "meiosis I", "id": "GO:0007127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007127", "evidence": [ { "database": "UniProtKB", "id": "A0A287AI21", "url": "https://www.uniprot.org/uniprotkb/A0A287AI21" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 469, "end_pos": 471, "annotation": "n_glycosylation_sequon" }, { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" }, { "start_pos": 957, "end_pos": 959, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AI21-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1309, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AI21-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AI21" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 57 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 469, "end_pos": 471 }, { "start_pos": 85, "end_pos": 87 }, { "start_pos": 957, "end_pos": 959 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287APA8-1", "uniprot_ac": "A0A287APA8", "uniprot_id": "A0A287APA8_PIG", "mass": { "chemical_mass": 58104.0, "monoisotopic_mass": 58104.0 }, "refseq": { "ac": "XP_020931527", "name": "arf-GAP domain and FG repeat-containing protein 1 isoform X8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931527" }, "gene_names": [ { "name": "AGFG1", "type": "recommended", "evidence": [ { "id": "A0A287APA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ] }, { "name": "AGFG1", "type": "synonym", "evidence": [ { "id": "XP_020931527", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931527" } ] } ], "protein_names": [ { "name": "Arf-GAP domain and FG repeat-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A287APA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8/entry#names_and_taxonomy" } ] }, { "name": "Nucleoporin-like protein RIP", "type": "synonym", "evidence": [ { "id": "A0A287APA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8/entry#names_and_taxonomy" } ] }, { "name": "arf-GAP domain and FG repeat-containing protein 1 isoform X8", "type": "synonym", "evidence": [ { "id": "XP_020931527", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931527" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AGFG1", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8", "locus": { "chromosome": "15", "start_pos": 128975510, "end_pos": 128898705, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016248", "url": "https://www.ensembl.org/id/ENSSSCG00000016248" } ] } } ], "crossref": [ { "id": "A0A287APA8", "url": "https://alphafold.ebi.ac.uk/entry/A0A287APA8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016248", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016248", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08857", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08857", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514990", "url": "https://www.ncbi.nlm.nih.gov/gene/100514990", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038508", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038508", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052248", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052248", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514990", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514990", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SDCKRNK", "url": "https://omabrowser.org/oma/group/SDCKRNK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SNM7", "url": "https://www.orthodb.org/?gene=F1SNM7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46134", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46134", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46134:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46134:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020931527", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931527", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AI24", "url": "https://www.uniprot.org/uniprotkb/A0A287AI24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AI24-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AI24-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AJX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJX6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK87", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK87-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK87-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNM7", "url": "https://www.uniprot.org/uniprotkb/F1SNM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNM7-1", "url": "https://www.uniprot.org/uniprotkb/F1SNM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPEQAKVVASVHASISGSSASSTSSTPEVKPLKSLLGDSAPALHLNKGTPTQSPVVGRSQGQQQEKKQFDLLSDLGSDIFAAPAPQSTATANFANFAHFNSHAAQNSANADFANFDAFGQSSGSSNFGGFPTASHSSFQPQTTGGSAGSVNANFAHFDNFPKSSSADFGTFNTSQSHQTASAVSKVSANKAGVQTTDKYAALANLDNIFSAGQGGDQGSGFGATGKAPVGSVVSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVGASAQTQPASSSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATAATFGTASMSMPAGFGTPAPYSLPTSFSGSFQQPAFPAQAAFPQQTAFSQQPNGAGFAAFGQTKPVVTPFGQVAAAGVSSNPFMTGAPTGQFPTGSSSTNPFL", "length": 562, "header": "tr|A0A287APA8-1|A0A287APA8_PIG Isoform 1 of Arf-GAP domain and FG repeat-containing protein 1 OS=Sus scrofa OX=9823 GN=AGFG1 PE=1 SV=3 CANONICAL=A0A287APA8-1" }, "isoforms": [ { "isoform_ac": "A0A287AI24-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8/entry#A0A287AI24-1", "sequence": { "sequence": "MAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPEQAKVVASVHASISGSSASSTSSTPEVKPLKSLLGDSAPALHLNKGTPTQSPVVGRSQGQQQEKKQFDLLSDLGSDIFAAPAPQSTATANFANFAHFNSHAAQNSANADFANFDAFGQSSGSSNFGGFPTASHSSFQPQTTGGSAGSVNANFAHFDNFPKSSSADFGTFNTSQSHQTASAVSKVSANKAGVQTTDKYAALANLDNIFSAGQGGDQGSGFGATGKAPVGSVVSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVGASAQTQPASSSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATGLSGAMHSQVFPHAHFAATFGTASMSMPAGFGTPAPYSLPTSFSGSFQQPAFPAQAAFPQQTAFSQQPNGAGFAAFGQTKPVVTPFGQVAAAGVSSNPFMTGAPTGQFPTGSSSTNPFL", "length": 578, "header": "tr|A0A287AI24-1|A0A287APA8_PIG Computationally mapped isoform of Arf-GAP domain and FG repeat-containing protein 1 OS=Sus scrofa OX=9823 GN=AGFG1 PE=1 SV=2 CANONICAL=A0A287APA8-1" }, "locus": { "chromosome": "15", "start_pos": 128973318, "end_pos": 128898904, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065375.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065375.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043646.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043646.2" } ] } }, { "isoform_ac": "A0A287AJX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8/entry#A0A287AJX6-1", "sequence": { "sequence": "MAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPEQAKVVASVHASISGSSASSTSSTPEVKPLKSLLGDSAPALHLNKGTPTQSPVVGRSQGQQQEKKQFDLLSDLGSDIFAAPAPQSTATANFANFAHFNSHAAQNSANADFANFDAFGQSSGSSNFGGFPTASHSSFQPQTTGGSAGSVNANFAHFDNFPKSSSADFGTFNTSQSHQTASAVSKVSANKAGVQTTDKYAALANLDNIFSAGQGGDQGSGFGATGKAPVGSVVSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVGASAQTQPASSSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATGAGFAAFGQTKPVVTPFGQVAAAGVSSNPFMTGAPTGQFPTGSSSTNPFL", "length": 509, "header": "tr|A0A287AJX6-1|A0A287AJX6_PIG Computationally mapped isoform of Arf-GAP domain and FG repeat-containing protein 1 OS=Sus scrofa OX=9823 GN=AGFG1 PE=1 SV=1 CANONICAL=A0A287APA8-1" }, "locus": { "chromosome": "15", "start_pos": 128973318, "end_pos": 128898904, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058789.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058789.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044307.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044307.1" } ] } }, { "isoform_ac": "A0A287APA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8/entry#A0A287APA8-1", "sequence": { "sequence": "MAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPEQAKVVASVHASISGSSASSTSSTPEVKPLKSLLGDSAPALHLNKGTPTQSPVVGRSQGQQQEKKQFDLLSDLGSDIFAAPAPQSTATANFANFAHFNSHAAQNSANADFANFDAFGQSSGSSNFGGFPTASHSSFQPQTTGGSAGSVNANFAHFDNFPKSSSADFGTFNTSQSHQTASAVSKVSANKAGVQTTDKYAALANLDNIFSAGQGGDQGSGFGATGKAPVGSVVSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVGASAQTQPASSSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATAATFGTASMSMPAGFGTPAPYSLPTSFSGSFQQPAFPAQAAFPQQTAFSQQPNGAGFAAFGQTKPVVTPFGQVAAAGVSSNPFMTGAPTGQFPTGSSSTNPFL", "length": 562, "header": "tr|A0A287APA8-1|A0A287APA8_PIG Isoform 1 of Arf-GAP domain and FG repeat-containing protein 1 OS=Sus scrofa OX=9823 GN=AGFG1 PE=1 SV=3 CANONICAL=A0A287APA8-1" }, "locus": { "chromosome": "15", "start_pos": 128973318, "end_pos": 128898904, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038663.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038663.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045729.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045729.3" } ] } }, { "isoform_ac": "A0A5G2QK87-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8/entry#A0A5G2QK87-1", "sequence": { "sequence": "MAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPEQAKVVASVHASISGSSASSTSSTPEVKPLKSLLGDSAPALHLNKGTPTQSPVVGRSQGQQQEKKQFDLLSDLGSDIFAAPAPQSTATANFANFAHFNSHAGGSAGSVNANFAHFDNFPKSSSADFGTFNTSQSHQTASAVSKVSANKAGVQTTDKYAALANLDNIFSAGQGGDQGSGFGATGKAPVGSVVSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVGASAQTQPASSSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATAATFGTASMSMPAGFGTPAPYSLPTSFSGSFQQPAFPAQAAFPQQTAFSQQPNGAGFAAFGQTKPVVTPFGQVAAAGVSSNPFMTGAPTGQFPTGSSSTNPFL", "length": 522, "header": "tr|A0A5G2QK87-1|A0A287APA8_PIG Computationally mapped isoform of Arf-GAP domain and FG repeat-containing protein 1 OS=Sus scrofa OX=9823 GN=AGFG1 PE=1 SV=1 CANONICAL=A0A287APA8-1" }, "locus": { "chromosome": "15", "start_pos": 128973318, "end_pos": 128898904, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079663.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079663.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065223.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065223.1" } ] } }, { "isoform_ac": "F1SNM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8/entry#F1SNM7-1", "sequence": { "sequence": "MAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPEQAKVVASVHASISGSSASSTSSTPEVKPLKSLLGDSAPALHLNKGTPTQSPVVGRSQGQQQEKKQFDLLSDLGSDIFAAPAPQSTATANFANFAHFNSHAAQNSANADFANFDAFGQSSGSSNFGGFPTASHSSFQPQTTAFRMLSSSCSFGEFTSAFPLQATNSGSAGSVNANFAHFDNFPKSSSADFGTFNTSQSHQTASAVSKVSANKAGVQTTDKYAALANLDNIFSAGQGGDQGSGFGATGKAPVGSVVSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVGASAQTQPASSSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATGLSGAMHSQVFPHAHFAATFGTASMSMPAGFGTPAPYSLPTSFSGSFQQPAFPAQAAFPQQTAFSQQPNGAGFAAFGQTKPVVTPFGQVAAAGVSSNPFMTGAPTGQFPTGSSSTNPFL", "length": 602, "header": "tr|F1SNM7-1|F1SNM7_PIG Computationally mapped isoform of Arf-GAP domain and FG repeat-containing protein 1 OS=Sus scrofa OX=9823 GN=AGFG1 PE=1 SV=2 CANONICAL=A0A287APA8-1" }, "locus": { "chromosome": "15", "start_pos": 128973318, "end_pos": 128898904, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017692.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017692.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017211.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017211.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 430, "start_aa": "Thr", "end_pos": 430, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr430", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK87", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK87" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514990", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514990", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5P882-1", "protein_name": "Arf-GAP domain and FG repeat-containing protein 1", "gene_name": "AGFG1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAASAKRKQEEKHLKLLREMSSLPPNRKCFDCDQRGPTYTDMTVGSFVCTSCSGILRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPEQAKVVASVHASISGSSASSTSSTPEVKPLKSLLGEAAPALHLNKGTPSQSPVVGRSQGQQQQEKKQFDLLSDLGSDIFAAPAPQSTATANFANFAHFNSHTAQNSANAGFANFDAFGQSSGSSNFGGFPTASQSSFQPQNTAFRTLSSSCSFGEFTSAFPLQAVHSGSAGSVNANFAHFDNFPKSSSADFGAFNASQSNATVTGASKAAVNKPGLQSADKYAALANLDNIFSAGQGGSEQGSGFSTVVSASAGPALSAPNQSSASSDKYAALAELDSVFSSTATSSNAYTSTSNVSSNAFGTVPVAATSQTQPASSSVPASFGATPSTNPFVAAPVAPVAPSTNPFQTNSRGATGLSGAMHSHIFPHAHFAATFGTASMSMPAGFGTPASYSLPTSFSGNFQQPTFPTQAAFPQQTAFAQQPNGAGFAAFGQAKPVVTPFGQVAAVGVSSNPFMAGAPTGQFPAGNSSTNPFL", "length": 604 }, "evidence": [ { "id": "A0A287APA8", "url": "https://omabrowser.org/oma/group/A0A287APA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P52594-1", "protein_name": "Arf-GAP domain and FG repeat-containing protein 1", "gene_name": "AGFG1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPEQAKVVASVHASISGSSASSTSSTPEVKPLKSLLGDSAPTLHLNKGTPSQSPVVGRSQGQQQEKKQFDLLSDLGSDIFAAPAPQSTATANFANFAHFNSHAAQNSANADFANFDAFGQSSGSSNFGGFPTASHSPFQPQTTGGSAASVNANFAHFDNFPKSSSADFGTFNTSQSHQTASAVSKVSTNKAGLQTADKYAALANLDNIFSAGQGGDQGSGFGTTGKAPVGSVVSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVVASAQTQPASSSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATAATFGTASMSMPTGFGTPAPYSLPTSFSGSFQQPAFPAQAAFPQQTAFSQQPNGAGFAAFGQTKPVVTPFGQVAAAGVSSNPFMTGAPTGQFPTGSSSTNPFL", "length": 562 }, "evidence": [ { "id": "A0A287APA8", "url": "https://omabrowser.org/oma/group/A0A287APA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K2K6-4", "protein_name": "Arf-GAP domain and FG repeat-containing protein 1", "gene_name": "Agfg1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPEQAKVVASVHASISGSSASSTSSTPEVKPLKSLLGESAPALHLNKGTPSQSPVVGRSQGQQQEKKQFDLLSDLGSDIFAAPAPQSTATANFANFAHFNSHAAQNSANADFANFDAFGQSSGSSNFGGFPTASHSSFQPQTTGGSAGSVNANFAHFDNFPKSSSADFGTFSTSQSHQTASTVSKVSTNKAGLQTADKYAALANLDNIFSAGQGGDQGSGFGTTGKAPVGSVVSVPSHSSASSDKYAALAELDSVFSSAATSSNAYTPTSNASSSVFGTVPVGASAQTQPASSGPAPFGATPSTNPFVAATGPSAASSTNPFQTNARGATAATFGTASMSMPAGFGTPAQYSLPTSFSGSFQQPAFPAQAAFPQQTAFSQQPNGAGFATFGQTKPVVTPFGQVAAAGVSSNPFMTGAPTGQLPTGSSSTNPFL", "length": 561 }, "evidence": [ { "id": "A0A287APA8", "url": "https://omabrowser.org/oma/group/A0A287APA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "pmid": "" }, { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "pmid": "" }, { "name": "cell projection", "id": "GO:0042995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042995", "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "pmid": "" }, { "name": "acrosome assembly", "id": "GO:0001675", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001675", "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "pmid": "" }, { "name": "spermatid nucleus differentiation", "id": "GO:0007289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007289", "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "pmid": "" }, { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "A0A287APA8", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287APA8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 562, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287APA8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287APA8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287APA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APA8" }, { "id": "PS50115", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50115" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Arf-GAP", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 135, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 430 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 300, "end_pos": 302 }, { "start_pos": 399, "end_pos": 401 }, { "start_pos": 41, "end_pos": 43 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": 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"https://www.uniprot.org/uniprotkb/A0A287AIF5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PCBP4", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5", "locus": { "chromosome": "13", "start_pos": 34090020, "end_pos": 34099886, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028446", "url": "https://www.ensembl.org/id/ENSSSCG00000028446" } ] } } ], "crossref": [ { "id": "A0A287AIF5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AIF5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028446", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028446", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22517", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22517", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22520", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22520", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22523", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22523", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100620941", "url": "https://www.ncbi.nlm.nih.gov/gene/100620941", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036612", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036612", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A287AIF5", "url": "https://www.orthodb.org/?gene=A0A287AIF5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SED6", "url": "https://www.orthodb.org/?gene=A0A4X1SED6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10288", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10288", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00013", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00013", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005669675", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669675", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AIF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SED6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SED6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SED6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SED6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LRN5", "url": "https://www.uniprot.org/uniprotkb/I3LRN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LRN5-1", "url": "https://www.uniprot.org/uniprotkb/I3LRN5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGSDAGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSTNQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMVPAGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPTDLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPVPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY", "length": 404, "header": "tr|A0A287AIF5-1|A0A287AIF5_PIG Isoform 1 of Poly(rC)-binding protein 4 OS=Sus scrofa OX=9823 GN=PCBP4 PE=1 SV=2 CANONICAL=A0A287AIF5-1" }, "isoforms": [ { "isoform_ac": "A0A287AIF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5/entry#A0A287AIF5-1", "sequence": { "sequence": "MSGSDAGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSTNQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMVPAGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPTDLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPVPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY", "length": 404, "header": "tr|A0A287AIF5-1|A0A287AIF5_PIG Isoform 1 of Poly(rC)-binding protein 4 OS=Sus scrofa OX=9823 GN=PCBP4 PE=1 SV=2 CANONICAL=A0A287AIF5-1" }, "locus": { "chromosome": "13", "start_pos": 34093795, "end_pos": 34090616, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057038.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057038.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043803.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043803.2" } ] } }, { "isoform_ac": "A0A4X1SED6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5/entry#A0A4X1SED6-1", "sequence": { "sequence": "MSGSDAGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRESPPKGATIPYHPSLSLGTVLLSTNQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPTDLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPVPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY", "length": 360, "header": "tr|A0A4X1SED6-1|A0A4X1SED6_PIG Computationally mapped isoform of Poly(rC) binding protein 4 OS=Sus scrofa OX=9823 GN=PCBP4 PE=1 SV=1 CANONICAL=A0A287AIF5-1" }, "locus": { "chromosome": "13", "start_pos": 34093795, "end_pos": 34090616, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045048.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045048.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051920.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051920.1" } ] } }, { "isoform_ac": "A0A5G2QLV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5/entry#A0A5G2QLV6-1", "sequence": { "sequence": "MSGSDAGLEEEPELSITLTLRMLMHGKVRGGFAKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSTNQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPTDLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPVPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY", "length": 401, "header": "tr|A0A5G2QLV6-1|A0A287AIF5_PIG Computationally mapped isoform of Poly(rC)-binding protein 4 OS=Sus scrofa OX=9823 GN=PCBP4 PE=1 SV=2 CANONICAL=A0A287AIF5-1" }, "locus": { "chromosome": "13", "start_pos": 34093795, "end_pos": 34090616, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084696.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084696.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065847.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065847.2" } ] } }, { "isoform_ac": "I3LRN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5/entry#I3LRN5-1", "sequence": { "sequence": "MSGSDAGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEVCGAPGLGKQRRWARPTHSLPVQDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSTNQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPTDLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPVPFLALPPASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY", "length": 426, "header": "tr|I3LRN5-1|A0A287AIF5_PIG Computationally mapped isoform of Poly(rC)-binding protein 4 OS=Sus scrofa OX=9823 GN=PCBP4 PE=1 SV=4 CANONICAL=A0A287AIF5-1" }, "locus": { "chromosome": "13", "start_pos": 34093795, "end_pos": 34090616, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026653.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026653.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026773.4", "url": "https://www.ensembl.org/id/ENSSSCP00000026773.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 209, "start_aa": "Thr", "end_pos": 209, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr209", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 320, "start_aa": "Thr", "end_pos": 320, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr320", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLV6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5" } ], "pmid": "" }, { "name": "negative regulation of mRNA splicing, via spliceosome", "id": "GO:0048025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048025", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5" } ], "pmid": "" }, { "name": "regulation of mRNA metabolic process", "id": "GO:1903311", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903311", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 391, "end_pos": 393, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AIF5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 404, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AIF5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AIF5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AIF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF5" }, { "id": "SM00322", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00322" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "K Homology", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 84, "start_aa": "Ile", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 209, 320 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"categories": [ "Protein Classification" ] }, { "id": "PTHR11477:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11477:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46174", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46174", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46174:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46174:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07500", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07500", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07744", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07744", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AIF6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIF6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHQ6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDEKGDPSSEEAPKAIKPTSKEFRKTWGFRRTTIAKREGAGDAEPEALEQPPPQQGLSLRRSGRQPKRTERVEEFLTTVRRRGRRSAPAPLEEPGEPASCPLTDGDTASEGSVDSASDGKGGPKPGSSAVKERPASSKAKGGDDDEDDTSDSDSDGLTLKELQNRLRRKREQEPADRPPKGLQSRLRKKRREDPVETAGVEAADAGEGSLPVKAEPEADQGAASPAAEDDREGELQGPAAPGGREQERGGPGRPKPECEVYDPSALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPHCTILQVQDERSAESAGPQAAGPRPADADGADLTSVGTVEQTSGGDQGIKGRIEKAANPSGKKKLKIFQPVVEAPGAAKCIGPGCSSAAQPDSVYCSSDCILKHAAATMRLLSAGKEPKPKPKEKGKTKPERLILQKCTVQAGIKVAPVHKRPAPDRKENAAKKAAAAPPRSESLAPEPASESSTPSWASDHNYNAVKPERTAAPRPPLLCKSGKEDRRVEKVVAAAAPKKGAPPGSSGGGKQPAPRNLLPKKSPPFANAATARPAIRKSPSGFKGTVPKRPWLSAAPSGAGPAAKQAGLAPGAASSAPKKFPGPAASAAAVKKPLPASAPLASPALGRLVPSSPASSQPNSQIRQNIRRSLKEILWRRAADSDDLVMTESEVGRVALRIEKEMFGLFRVTDSRYKSKYRSLMFNLKDPKNQGLFHRVLREDISLAKLVRMKPEELVSKELSVWKERPAKAVMEPRAKLHSESKKPAAKQETAPDLGDSPPVSDSDEQQEAVRAAPERSAAPLDVFSSMLTDTTSQHRAHLFDLNCKICTGQVPSSEDEPAPKKQKVSASARKEDSKPVLGSPAPEPGLSSADDLVPDALPKHASEPDLGGAAQAHLEGTHPPVPAGDTPPAPATLEDPPGPAPGGGSVLTTVTVSGRDPRTAPGAASTVTAPAAPAAEPRPDPPKPVATSVTVPKSILAKPSTPPEPRYLLSIPPSPSTSVPESRSPPDGDTSLFLSRLGTIWKGFINMQSVAKFVTKAYPVSGCFDHLSEDLPDTIHVGGRIAPRTVWDYVGKLKSSVSKELCLIRFQPATEEEEVAYISLYSYFSSRGRFGVVANNSRHVKDLYLIPLSARDPVPSKLLPFEGPGKHQPSEPTCPRPRTPGPAPCHQWALWGLASGMWAAGPRGSLPQARVASGKSQEAGAPRSAHPQAAPAPGEHPLPLRARGTWGERWAEARPPRGLLAGPSPACCSRGRLQPASSRALVPRRGLLQRTAYTLAQACRGPRVTPGGQLLLTPKKVT", "length": 1325, "header": "tr|A0A287AIZ5-1|A0A287AIZ5_PIG Isoform 1 of Death-inducer obliterator 1 OS=Sus scrofa OX=9823 GN=DIDO1 PE=4 SV=2 CANONICAL=A0A287AIZ5-1" }, "isoforms": [ { "isoform_ac": "A0A287AIF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ5/entry#A0A287AIF6-1", "sequence": { "sequence": "MDEKGDPSSEEAPKAIKPTSKEFRKTWGFRRTTIAKREGAGDAEPEALEQPPPQQGLSLRRSGRQPKRTERVEEFLTTVRRRGRRSAPAPLEEPGEPASCPLTDGDTASEGSVDSASDGKGGPKPGSSAVKERPASSKAKGGDDDEDDTSDSDSDGLTLKELQNRLRRKREQEPADRPPKGLQSRLRKKRREDPVETAGVEAADAGEGSLPVKAEPEADQGAASPAAEDDREGELQGPAAPGGREQERGGPGRPKPECEVYDPSALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPHCTILQVQDERSAESAGPQAAGPRPADADGADLTSVGTVEQTSGGDQGIKGRIEKAANPSGKKKLKIFQPVVEAPGAAKCIGPGCSSAAQPDSVYCSSDCILKHAAATMRLLSAGKEPKPKPKEKGKTKPERLILQKCTVQAGIKVAPVHKRPAPDRKENAAKKAAAAPPRSESLAPEPASESSTPSWASDHNYNAVKPERTAAPRPPLLCKCGEYPGL", "length": 533, "header": "tr|A0A287AIF6-1|A0A287AIZ5_PIG Computationally mapped isoform of Death-inducer obliterator 1 OS=Sus scrofa OX=9823 GN=DIDO1 PE=4 SV=2 CANONICAL=A0A287AIZ5-1" }, "locus": { "chromosome": "17", "start_pos": 62153535, "end_pos": 62148887, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040552.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040552.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043664.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043664.2" } ] } }, { "isoform_ac": "A0A287AIZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ5/entry#A0A287AIZ5-1", "sequence": { "sequence": "MDEKGDPSSEEAPKAIKPTSKEFRKTWGFRRTTIAKREGAGDAEPEALEQPPPQQGLSLRRSGRQPKRTERVEEFLTTVRRRGRRSAPAPLEEPGEPASCPLTDGDTASEGSVDSASDGKGGPKPGSSAVKERPASSKAKGGDDDEDDTSDSDSDGLTLKELQNRLRRKREQEPADRPPKGLQSRLRKKRREDPVETAGVEAADAGEGSLPVKAEPEADQGAASPAAEDDREGELQGPAAPGGREQERGGPGRPKPECEVYDPSALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPHCTILQVQDERSAESAGPQAAGPRPADADGADLTSVGTVEQTSGGDQGIKGRIEKAANPSGKKKLKIFQPVVEAPGAAKCIGPGCSSAAQPDSVYCSSDCILKHAAATMRLLSAGKEPKPKPKEKGKTKPERLILQKCTVQAGIKVAPVHKRPAPDRKENAAKKAAAAPPRSESLAPEPASESSTPSWASDHNYNAVKPERTAAPRPPLLCKSGKEDRRVEKVVAAAAPKKGAPPGSSGGGKQPAPRNLLPKKSPPFANAATARPAIRKSPSGFKGTVPKRPWLSAAPSGAGPAAKQAGLAPGAASSAPKKFPGPAASAAAVKKPLPASAPLASPALGRLVPSSPASSQPNSQIRQNIRRSLKEILWRRAADSDDLVMTESEVGRVALRIEKEMFGLFRVTDSRYKSKYRSLMFNLKDPKNQGLFHRVLREDISLAKLVRMKPEELVSKELSVWKERPAKAVMEPRAKLHSESKKPAAKQETAPDLGDSPPVSDSDEQQEAVRAAPERSAAPLDVFSSMLTDTTSQHRAHLFDLNCKICTGQVPSSEDEPAPKKQKVSASARKEDSKPVLGSPAPEPGLSSADDLVPDALPKHASEPDLGGAAQAHLEGTHPPVPAGDTPPAPATLEDPPGPAPGGGSVLTTVTVSGRDPRTAPGAASTVTAPAAPAAEPRPDPPKPVATSVTVPKSILAKPSTPPEPRYLLSIPPSPSTSVPESRSPPDGDTSLFLSRLGTIWKGFINMQSVAKFVTKAYPVSGCFDHLSEDLPDTIHVGGRIAPRTVWDYVGKLKSSVSKELCLIRFQPATEEEEVAYISLYSYFSSRGRFGVVANNSRHVKDLYLIPLSARDPVPSKLLPFEGPGKHQPSEPTCPRPRTPGPAPCHQWALWGLASGMWAAGPRGSLPQARVASGKSQEAGAPRSAHPQAAPAPGEHPLPLRARGTWGERWAEARPPRGLLAGPSPACCSRGRLQPASSRALVPRRGLLQRTAYTLAQACRGPRVTPGGQLLLTPKKVT", "length": 1325, "header": "tr|A0A287AIZ5-1|A0A287AIZ5_PIG Isoform 1 of Death-inducer obliterator 1 OS=Sus scrofa OX=9823 GN=DIDO1 PE=4 SV=2 CANONICAL=A0A287AIZ5-1" }, "locus": { "chromosome": "17", "start_pos": 62153535, "end_pos": 62136704, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050346.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050346.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043978.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043978.2" } ] } }, { "isoform_ac": "A0A8W4FHQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ5/entry#A0A8W4FHQ6-1", "sequence": { "sequence": "MDEKGDPSSEEAPKAIKPTSKEFRKTWGFRRTTIAKREGAGDAEPEALEQPPPQQGLSLRRSGRQPKRTERVEEFLTTVRRRGRRSAPAPLEEPGEPASCPLTDGDTASEGSVDSASDGKGGPKPGSSAVKERPASSKAKGGDDDEDDTSDSDSDGLTLKELQNRLRRKREQEPADRPPKGLQSRLRKKRREDPVETAGVEAADAGEGSLPVKAEPEADQGAASPAAEDDREGELQGPAAPGGREQERGGPGRPKPECEVYDPSALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPHCTILQVQDERSAESAGPQAAGPRPADADGADLTSVGTVEQTSGGDQGIKGRIEKAANPSGKKKLKIFQPVVEAPGAAKCIGPGCSSAAQPDSVYCSSDCILKHAAATMRLLSAGKEPKPKPKEKGKTKPERLILQKCTVQAGIKVAPVHKRPAPDRKENAAKKAAAAPPRSESLAPEPASESSTPSWASDHNYNAVKPERTAAPRPPLLCKCTYHQGARDTSPPRAAVPGA", "length": 546, "header": "tr|A0A8W4FHQ6-1|A0A287AIZ5_PIG Computationally mapped isoform of Death-inducer obliterator 1 OS=Sus scrofa OX=9823 GN=DIDO1 PE=4 SV=1 CANONICAL=A0A287AIZ5-1" }, "locus": { "chromosome": "17", "start_pos": 62153535, "end_pos": 62149052, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102889.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102889.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078411.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078411.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1312, "start_aa": "Thr", "end_pos": 1312, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1312", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 499, "start_aa": "Thr", "end_pos": 499, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr499", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 933, "start_aa": "Thr", "end_pos": 933, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr933", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FHQ6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHQ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "apoptotic signaling pathway", "id": "GO:0097190", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097190", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ5" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Set1C/COMPASS complex", "id": "GO:0048188", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048188", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ5" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ5" } ], "pmid": "" }, { "name": "spindle", "id": "GO:0005819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005819", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1142, "end_pos": 1144, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 499, 933, 1312 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1142, "end_pos": 1144 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AII8-1", "uniprot_ac": "A0A287AII8", "uniprot_id": "A0A287AII8_PIG", "mass": { "chemical_mass": 80090.0, "monoisotopic_mass": 80090.0 }, "refseq": {}, "gene_names": [ { "name": "GBE1", "type": "recommended", "evidence": [ { "id": "A0A287AII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8" } ] } ], "protein_names": [ { "name": "1,4-alpha-glucan branching enzyme", "type": "recommended", "evidence": [ { "id": "A0A287AII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.18", "type": "synonym", "evidence": [ { "id": "A0A287AII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Glycogen-branching enzyme participates in the glycogen biosynthetic process along with glycogenin and glycogen synthase. Generates alpha-1,6-glucosidic branches from alpha-1,4-linked glucose chains, to increase solubility of the glycogen polymer.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QST8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST8#function" }, { "database": "UniProtKB", "id": "ARBA00049618", "url": "https://www.uniprot.org/uniprotkb/ARBA00049618#function" }, { "database": "UniProtKB", "id": "A0A5G2QWK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK2#function" }, { "database": "UniProtKB", "id": "F1SK65", "url": "https://www.uniprot.org/uniprotkb/F1SK65#function" }, { "database": "UniProtKB", "id": "A0A5G2QE35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE35#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AII8", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GBE1", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8", "locus": { "chromosome": "13", "start_pos": 173914756, "end_pos": 173634454, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012000", "url": "https://www.ensembl.org/id/ENSSSCG00000012000" } ] } } ], "crossref": [ { "id": "A0A287AII8", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AII8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012000", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012000", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02854", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02854", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11321", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11321", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR004193", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004193", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013780", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013780", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037439", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037439", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43651", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43651", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43651:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43651:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00128", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00128", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02806", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02806", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02922", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02922", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3322077", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3322077", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AII8", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AII8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE35-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE35-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QST8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QST8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK65", "url": "https://www.uniprot.org/uniprotkb/F1SK65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK65-1", "url": "https://www.uniprot.org/uniprotkb/F1SK65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASAGAPAPAEGSEEALASALADVPELARLLETDPYLKPYAPDFQRRYKRFNQTLTNFGENEGGIDKFSRGYESFGIHRCADGGLYCKEWAPGAEGVFLTGDFNDWNPFSYPYKKLDFGKWELYIPPKQNRSVLVPHGSKLKIVIRSKSGEILYRISPWAKYVTREGDNVNYDWTHWDPEHPYKFKHSKPKKPKGPRIYESHVGISSYEGKIASYKHFTCNVLPRIKDLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGTPEELKELVDTAHSMGITVLLDLVHSHASKNSEDGLNMFDGTESCYFHYGPRGNHNLWDSRLFDYSSWEVLRFLLSNIRWWLEEYGFDGFRFDGVTSMLYYHHGIGQSFSGDYHEYFGLHVDEEALTYLMLANHLIHTLYPDSITIAEDVSGMPTLCSPISQGGSGFDYRLAMAIPDKWIQLLKEFKDEDWNMGNIVYTLTNRRHLEKSIAYAESHDQALVGDKTLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHTLGGEGYLNFMGNEFGHPEWLDFPRKGNDESYHYARRQFHLTDDDLLRYKFLNNFDRDMNKLEERCGWLSAPQIQMQQNMEDTRDWTTIPTSSLNLLNIISVPTLFWCTFQTEWPSSFRTWTRPTEESDFSSTRGRCALCFPTLIVTELIMCKLFKYICLGKMSDV", "length": 694, "header": "tr|A0A287AII8-1|A0A287AII8_PIG Isoform 1 of 1,4-alpha-glucan branching enzyme OS=Sus scrofa OX=9823 GN=GBE1 PE=1 SV=2 CANONICAL=A0A287AII8-1" }, "isoforms": [ { "isoform_ac": "A0A287AII8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8/entry#A0A287AII8-1", "sequence": { "sequence": "MAASAGAPAPAEGSEEALASALADVPELARLLETDPYLKPYAPDFQRRYKRFNQTLTNFGENEGGIDKFSRGYESFGIHRCADGGLYCKEWAPGAEGVFLTGDFNDWNPFSYPYKKLDFGKWELYIPPKQNRSVLVPHGSKLKIVIRSKSGEILYRISPWAKYVTREGDNVNYDWTHWDPEHPYKFKHSKPKKPKGPRIYESHVGISSYEGKIASYKHFTCNVLPRIKDLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGTPEELKELVDTAHSMGITVLLDLVHSHASKNSEDGLNMFDGTESCYFHYGPRGNHNLWDSRLFDYSSWEVLRFLLSNIRWWLEEYGFDGFRFDGVTSMLYYHHGIGQSFSGDYHEYFGLHVDEEALTYLMLANHLIHTLYPDSITIAEDVSGMPTLCSPISQGGSGFDYRLAMAIPDKWIQLLKEFKDEDWNMGNIVYTLTNRRHLEKSIAYAESHDQALVGDKTLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHTLGGEGYLNFMGNEFGHPEWLDFPRKGNDESYHYARRQFHLTDDDLLRYKFLNNFDRDMNKLEERCGWLSAPQIQMQQNMEDTRDWTTIPTSSLNLLNIISVPTLFWCTFQTEWPSSFRTWTRPTEESDFSSTRGRCALCFPTLIVTELIMCKLFKYICLGKMSDV", "length": 694, "header": "tr|A0A287AII8-1|A0A287AII8_PIG Isoform 1 of 1,4-alpha-glucan branching enzyme OS=Sus scrofa OX=9823 GN=GBE1 PE=1 SV=2 CANONICAL=A0A287AII8-1" }, "locus": { "chromosome": "13", "start_pos": 173909054, "end_pos": 173634788, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043353.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043353.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043706.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043706.2" } ] } }, { "isoform_ac": "A0A5G2QE35-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8/entry#A0A5G2QE35-1", "sequence": { "sequence": "MAASAGAPAPAEGSEEALASALADVPELARLLETDPYLKPYAPDFQRRYKRFNQTLTNFGENEGGIDKFSRGYESFGIHRCADGGLYCKEWAPGAEGVFLTGDFNDWNPFSYPYKKLDFGKWELYIPPKQNRSVLVPHGSKLKIVIRSKSGEILYRISPWAKYVTREGDNVNYDWTHWDPEHPYKFKHSKPKKPKGPRIYESHVGISSYEGKIASYKHFTCNVLPRIKDLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGTPEELKELVDTAHSMGITVLLDLVHSHASKNSEDGLNMFDGTESCYFHYGPRGNHNLWDSRLFDYSSWEVLRFLLSNIRWWLEEYGFDGFRFDGVTSMLYYHHGIGQSFSGDYHEYFGLHVDEEALTYLMLANHLIHTLYPDSITIAEGGSGFDYRLAMAIPDKWIQLLKEFKDEDWNMGNIVYTLTNRRHLEKSIAYAESHDQALVGDKTLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHTLGGEGYLNFMGNEFGHPEWLDFPRKGNDESYHYARRQFHLTDDDLLRYKFLNNFDRDMNKLEERCGWLSAPQAHVSEKHETNKVIAFERAGLLFVFNFHPSKSYTDYRVGTTLPGKFKIVLDSDAAEYGGHQRLDHNTDFFSEPFEHNKRPYSLLVYIPNRVALILQNVDPPN", "length": 688, "header": "tr|A0A5G2QE35-1|A0A5G2QE35_PIG Computationally mapped isoform of 1,4-alpha-glucan-branching enzyme OS=Sus scrofa OX=9823 GN=GBE1 PE=1 SV=2 CANONICAL=A0A287AII8-1" }, "locus": { "chromosome": "13", "start_pos": 173908930, "end_pos": 173634788, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082355.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082355.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060300.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060300.2" } ] } }, { "isoform_ac": "A0A5G2QST8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8/entry#A0A5G2QST8-1", "sequence": { "sequence": "MAASAGAPAPAEGSEEALASALADVPELARLLETDPYLKPYAPDFQRRYKRFNQTLTNFGENEGGIDKFSRGYESFGIHRCADGGLYCKEWAPGAEGVFLTGDFNDWNPFSYPYKKLDFGKWELYIPPKQNRSVLVPHGSKLKIVIRSKSGEILYRISPWAKYVTREGDNVNYDWTHWDPEHPYKFKHSKPKKPKGPRIYESHVGISSYEGKIASYKHFTCNVLPRIKDLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGTPEELKELVDTAHSMGITVLLDLVHSHASKNSEDGLNMFDGTESCYFHYGPRGNHNLWDSRLFDYSSWEVLRFLLSNIRWWLEEYGFDGFRFDGVTSMLYYHHGIGQSFSGDYHEYFGLHVDEEALTYLMLANHLIHTLYPDSITIAEDVSGMPTLCSPISQGGSGFDYRLAMAIPDKWIQLLKEFKDEDWNMGNIVYTLTNRRHLEKSIAYAESHDQALVGDKTLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHTLGGEGYLNFMGNEFGHPEWLDFPRKGNDESYHYARRQFHLTDDDLLRYKFLNNFDRDMNKLEERCGWLSAPQAHVSEKHETNKVIAFERAGLLFVFNFHPSKSYTDYRVGTTFCTFKIVLDSDAAEYGGHQRLDHNTDFFSEPFEHNKRPYSLLETTPQ", "length": 688, "header": "tr|A0A5G2QST8-1|A0A5G2QST8_PIG Computationally mapped isoform of 1,4-alpha-glucan-branching enzyme OS=Sus scrofa OX=9823 GN=GBE1 PE=1 SV=1 CANONICAL=A0A287AII8-1" }, "locus": { "chromosome": "13", "start_pos": 173898807, "end_pos": 173634788, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087974.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087974.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067995.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067995.2" } ] } }, { "isoform_ac": "A0A5G2QWK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8/entry#A0A5G2QWK2-1", "sequence": { "sequence": 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"length": 652, "header": "tr|A0A5G2QYJ4-1|A0A5G2QYJ4_PIG Computationally mapped isoform of 1,4-alpha-glucan branching enzyme OS=Sus scrofa OX=9823 GN=GBE1 PE=1 SV=1 CANONICAL=A0A287AII8-1" }, "locus": { "chromosome": "13", "start_pos": 173877092, "end_pos": 173634788, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089555.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089555.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069986.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069986.1" } ] } }, { "isoform_ac": "F1SK65-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8/entry#F1SK65-1", "sequence": { "sequence": 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"database": "Ensembl Transcript", "id": "ENSSSCT00000013131.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013131.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012785.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012785.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AII8", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3322077", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3322077", "resource": "Reactome", "description": "Glycogen synthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "hydrolase activity, hydrolyzing O-glycosyl compounds", "id": "GO:0004553", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004553", "evidence": [ { "database": "UniProtKB", "id": "A0A287AII8", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8" } ], "pmid": "" }, { "name": "1,4-alpha-glucan branching enzyme activity", "id": "GO:0003844", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003844", "evidence": [ { "database": "UniProtKB", "id": "A0A287AII8", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8" } ], "pmid": "" }, { "name": "cation binding", "id": "GO:0043169", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043169", "evidence": [ { "database": "UniProtKB", "id": "A0A287AII8", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AII8", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AII8", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "glycogen biosynthetic process", "id": "GO:0005978", "url": 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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3322005", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3322005" } ] }, { "id": "R-SSC-3322016", "name": "GBE1 catalyzes branch formation in polyGlc-GYG2 complexed with GYS2-a", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3322016", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3322016" } ] }, { "id": "R-SSC-3322057", "name": "GBE1 catalyzes branch formation in polyGlc-GYG1 complexed with GYS1-b", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3322057", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3322057" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AII8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 694, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AII8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AII8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AII8" }, { "id": "SM00642", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00642" } ], 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"Protein" ] }, { "id": "A0A287AIT5", "url": "https://www.uniprot.org/uniprotkb/A0A287AIT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B467", "url": "https://www.uniprot.org/uniprotkb/A0A287B467", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B467-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B467-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYV8", "url": "https://www.uniprot.org/uniprotkb/F1RYV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYV8-1", "url": "https://www.uniprot.org/uniprotkb/F1RYV8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPRTADGCFLGDVGFWVERTPVHEAAQRGETRQLQQLIESGACVNQVTVDSITPLHAASLQGQAQCVQLLLAAGAQVDARNIDGSTPLCDACASGSVECVKLLLSYGAKVNPPLYTASPLHEACMSGSSECVRLLIDVGANLEAHDCHFGTPLHVACAREHLDCVKVLLNAGANVNAAKLHETALHHAAKVKNVDLIEMLVQFGGDIYARDNRGRKPSDYARSSSAPARCLEHYEKTPLTLSQLCRVSLRRATGVRGLEKIAKLNIPARLIEYLSYN", "length": 278, "header": "tr|A0A287AIT5-1|A0A287AIT5_PIG Isoform 1 of Ankyrin repeat and SOCS box containing 13 OS=Sus scrofa OX=9823 GN=ASB13 PE=1 SV=1 CANONICAL=A0A287AIT5-1" }, "isoforms": [ { "isoform_ac": "A0A287AIT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIT5/entry#A0A287AIT5-1", "sequence": { "sequence": "MEPRTADGCFLGDVGFWVERTPVHEAAQRGETRQLQQLIESGACVNQVTVDSITPLHAASLQGQAQCVQLLLAAGAQVDARNIDGSTPLCDACASGSVECVKLLLSYGAKVNPPLYTASPLHEACMSGSSECVRLLIDVGANLEAHDCHFGTPLHVACAREHLDCVKVLLNAGANVNAAKLHETALHHAAKVKNVDLIEMLVQFGGDIYARDNRGRKPSDYARSSSAPARCLEHYEKTPLTLSQLCRVSLRRATGVRGLEKIAKLNIPARLIEYLSYN", "length": 278, "header": "tr|A0A287AIT5-1|A0A287AIT5_PIG Isoform 1 of Ankyrin repeat and SOCS box containing 13 OS=Sus scrofa OX=9823 GN=ASB13 PE=1 SV=1 CANONICAL=A0A287AIT5-1" }, "locus": { "chromosome": "10", "start_pos": 65300670, "end_pos": 65275590, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045001.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045001.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043918.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043918.1" } ] } }, { "isoform_ac": "A0A287B467-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIT5/entry#A0A287B467-1", "sequence": { "sequence": "MHYSQQPRHGNNPNVHRHTTGLGRCGVYTHVLRGFSLRKHIPGFWVERTPVHEAAQRGETRQLQQLIESGACVNQVTVDSITPLHAASLQGQAQCVQLLLAAGAQVDARNIDGSTPLCDACASGSVECVKLLLSYGAKVNPPLYTASPLHEACMSGSSECVRLLIDVGANLEAHDCHFGTPLHVACAREHLDCVKVLLNAALSSWRKPQESLLRDAEGGFEGAAAGANVNAAKLHETALHHAAKVKNVDLIEMLVQFGGDIYARDNRGRKPSDYARSSSAPARCLEHYEKTPLTLSQLCRVSLRRATGVRGLEKIAKLNIPARLIEYLSYN", "length": 331, "header": "tr|A0A287B467-1|A0A287B467_PIG Computationally mapped isoform of Ankyrin repeat and SOCS box containing 13 OS=Sus scrofa OX=9823 GN=ASB13 PE=3 SV=2 CANONICAL=A0A287AIT5-1" }, "locus": { "chromosome": "10", "start_pos": 65300670, "end_pos": 65276900, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039203.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039203.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051276.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051276.2" } ] } }, { "isoform_ac": "F1RYV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIT5/entry#F1RYV8-1", "sequence": { "sequence": "RGRVFSFPGFWVERTPVHEAAQRGETRQLQQLIESGACVNQVTVDSITPLHAASLQGQAQCVQLLLAAGAQVDARNIDGSTPLCDACASGSVECVKLLLSYGAKVNPPLYTASPLHEACMSGSSECVRLLIDVGANLEAHDCHFGTPLHVACAREHLDCVKVLLNAGANVNAAKLHETALHHAAKVKNVDLIEMLVQFGGDIYARDNRGRKPSDYARSSSAPARCLEHYEKTPLTLSQLCRVSLRRATGVRGLEKIAKLNIPARLIEYLSYN", "length": 272, "header": "tr|F1RYV8-1|A0A287AIT5_PIG Computationally mapped isoform of Ankyrin repeat and SOCS box containing 13 OS=Sus scrofa OX=9823 GN=ASB13 PE=1 SV=3 CANONICAL=A0A287AIT5-1" }, "locus": { "chromosome": "10", "start_pos": 65300670, "end_pos": 65289155, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012197.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012197.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011884.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011884.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RYV8", "url": "https://www.uniprot.org/uniprotkb/F1RYV8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XZ64-1", "protein_name": "Ankyrin repeat and SOCS box containing 13", "gene_name": "ASB13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MCTFAERPLALTLHTQDQTKKKSELIPLYKPLNLPMERPEARLYAPCCVCDVLFPRGFWVDRTPVHEAARQGEILQLQQLIESGACVNAVTYDSITPLHEASLRGQTQCVKLLLAAGAQVDARNIDGSTPLCDACASGSIECVKVLLSHGAKVNPPLYTASPLHEACMNGSSDCVQLLIDVGANLEAHDCHFGTPLHVACAREHLDCVKLLLKAGANVNAAKLHETALHHAAKVKNVDLVEMLIEFGGNIYARDNRGKKPSDYTLRSSPTAKCFEYYEKTPLSLSQLCRVTVRKAAGQRALEKIAKLNIPQRLIQYLSYN", "length": 320 }, "evidence": [ { "id": "A0A287AIT5", "url": "https://omabrowser.org/oma/group/A0A287AIT5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZEJ6-1", "protein_name": "Ankyrin repeat and SOCS box-containing 13", "gene_name": "Asb13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPRAGDRCFLGDVGFWVERTPVHEAAQRGESLQLQQLINSGACVNQVTVDSITPLHAASLQGQAQCVQLLLAAGAQVDARNIDGSTPLCDACASGNVECVKLLLSYGAKVNPPLYTASPLHEACMSGNSDCVRLLIDVGANLEAHDCHFGTPLHVACAREHLDCVKVLLNAGANVNAAKLHETALHHAAKVKNVDLIVMLIEFGGNIYARDNRGKKPSDYTWSSSAPAKCFEYYEKTPLTLSQLCRVTLRKATGVRGLEKVAKLNIPPRLIDYLSYN", "length": 278 }, "evidence": [ { "id": "A0A287AIT5", "url": "https://omabrowser.org/oma/group/A0A287AIT5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BJ12-1", "protein_name": "Ankyrin repeat and SOCS box containing 13", "gene_name": "ASB13", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPRASDSSFLGDVGFWVERTPVHEAAQRGETRQLQQLIESGACVNQVTVDSITPLHAASLQGQVQCVQLLLAAGAQVDARNIDGSTPLCDACASGSVECVKLLLSYGAKVNPPLYTASPLHEACMSGSSECVRLLIDVGANLEAHDCHFGTPLHVACAREHLDCVKVLLNAGANVNAAKLHETALHHAAKVKNVDLIEMLIQFGGNIYARDNRGRKPSDYTWASSAPARCLEHYEKTPLSLSQLCRVSLRRAAGVRGLEKIARLDIPPRLIDFLSYN", "length": 278 }, "evidence": [ { "id": "A0A287AIT5", "url": "https://omabrowser.org/oma/group/A0A287AIT5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7FFH0-1", "protein_name": "Ankyrin repeat and SOCS box protein 13 isoform X1", "gene_name": "asb13b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEFEITRTRPSLFGDIAHGLGFWTDRSAVHEAAAQGRVVQLRKLIENGASVNIVAVDSITPLHEACIQGHTQCVKLLLDAGAHVDARNIDGSTPLCDACAAGSLECVKLLLEHGATVNPPLFTFSPLHEACMGGNSKCVQLMIDEGALMEAHDCHFGTPLHVACARQHLDCVKVLLNAGANVNAAKLHETALHHAAKVKNLELIELLVEFGGNIFARDNLGKKPIQYTRSSSASALCLEFYESTPLSLQQLCRISLRNALGKRALGVFTQLGLPNRIIWFLSYLPAPPMELLQS", "length": 294 }, "evidence": [ { "id": "A0A287AIT5", "url": "https://omabrowser.org/oma/group/A0A287AIT5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3GR75-1", "protein_name": "Ankyrin repeat and SOCS box protein 13", "gene_name": "Asb13", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEPRAGDGCFLGDVGFWVERTPVHEAAQRGESLQLQQLIESGACVNQVTVDSITPLHAASLQGQAQCVQLLLAAGAQVDARNIDGSTPLCDACASGSIECVKLLLSYGAKVNPPLYTASPLHEACMSGSSECVRLLIDVGANLEAHDCHFGTPLHVACAREHLDCVKVLLNAGANVNAAKLHETALHHAAKVKNVDLIEMLIEFGGNIYARDNRGKKPSDYTWSSSAPAKCFEYYEKTPLTLSQLCRVSLRKATGVRGLEKVAKLNIPPRLIDYLSYN", "length": 278 }, "evidence": [ { "id": "A0A287AIT5", "url": "https://omabrowser.org/oma/group/A0A287AIT5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8VBX0-1", "protein_name": "Ankyrin repeat and SOCS box protein 13", "gene_name": "Asb13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { 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"MLSRPKPGESEVDLLRFQSQFLAAGATPAVQLVKKGSRKGGDANPDQPPLQDRRDVVMLDNLPDLPPALVPAPPKRAKPSLGCPLPEHEDPEERLNRHDQHITAVLTKIIERDTSSVAVNLPVPSGVAFPPVFHRSQGRQGKPATSGKRSIFAQEIAARRASEAKIPPVREVASTLDPPGGAVTSEAVTPREQGSQLPWGSCSFQGPHLVTGKGLRSQEAEQEAQTIHEENVARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSPSRTHEQAGEKASGEQRPGGPSVEVTGEELIMPASAREPRQEDELEPGAPALALPVTRHKEWLHMDTVELEKLQWTQDLPPLRQQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISRAQAGEFGDRLVGSVLHLLLDAGFLFLLRFSLDDRVEGVIAAAVRALRALLVVPGDEKLLDSTFSWYLGAAVFPLMPSQEDKEDEDEDAEPLGEKAKRKTPEEGNRPPSDLARHDVIKGLLATNLLPRLRYLLEVTCPGPSVVLDILAVLIRLARHSLESATRVLECPRLIETVVREFLPTSWSRMEVGPTPSLHRVPCAPAMKLLRVLASAGRNIAARLLSGFDLRSRLYRFIAEAPQELALPPEEAETLSTEAFRLWAVAACYGQGGDLYRELYPVLMQTLQAVPKELSSHVPRPLALQRIASLLTLLTQLTLAASSTTPEPSSDSAEASLSATPSSITWTQVSGLQPLVEPCLRETLKLLPRPEMWSALGPVPPACLLFMDAYYQAWSQQPGLCPGDWLQDMERLSEELLLPLLSQPALGSLWDSLRCCSPLCNPQSCAPAPEALPSLVSLGCTGGPPHLSLAGSASPFPFLTALLSLFNTLGRIHKGLCGQLAAILAAPGVQNYFLQCMAPEVAPQLTPFTAWALRHEYHLQYLALSLAQRAATLQPVSAPSAALHHGMALALLGRLLPGSEHLAHELLLSCAFRLEFLPERASGGPEAADFSDQLSLGSSGDLGCGRGALLAQACRDLPSIRSCYLTHCSLARAGLLASQALYRGELHRIPALLLPVPREPLLPTDWPFLPLIHLYHRATDTPSGLPPADTVGTAMRALQWVLILESWRPQALWAVPPAACLARLMCVFLVDSELFRETPVQRLVAALLARLCQPDVLPKLNLDCPLPGLASFQDLYANFLEHFEAVSFGDHLFGALVLLPLQRRFSATLRLALFGEHVGALRALGLPLTQLPVSLECYTGPPEDNLALLQLYFRALVTGALRPCWCPVLYAVAVAHVNSFIFSQDPKSSDEVKAARRSMLQKTWLLTDEGLRQHLLHYKLPNSALPEGFELYPQLPPLRQQYLQKLISGMLQNGVSET", "length": 1393, "header": "tr|A0A287AIU1-1|A0A287AIU1_PIG Isoform 1 of RNA polymerase II associated protein 1 OS=Sus scrofa OX=9823 GN=RPAP1 PE=3 SV=1 CANONICAL=A0A287AIU1-1" }, "isoforms": [ { "isoform_ac": "A0A287AIU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU1/entry#A0A287AIU1-1", "sequence": { "sequence": 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"length": 1393, "header": "tr|A0A287AIU1-1|A0A287AIU1_PIG Isoform 1 of RNA polymerase II associated protein 1 OS=Sus scrofa OX=9823 GN=RPAP1 PE=3 SV=1 CANONICAL=A0A287AIU1-1" }, "locus": { "chromosome": "1", "start_pos": 129856664, "end_pos": 129839489, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046153.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046153.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043917.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043917.1" } ] } }, { "isoform_ac": "F1SSV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU1/entry#F1SSV8-1", "sequence": { "sequence": "MLSRPKPGESEVDLLRFQSQFLAAGATPAVQLVKKGSRKGGDANPDQPPLQDRRDVVMLDNLPDLPPALVPAPPKRAKPSLGCPLPEHEDPEERLNRHDQHITAVLTKIIERDTSSVAVNLPVPSGVAFPPVFHRSQGRQGKPATSGKRSIFAQEIAARRASEAKIPPVREVASTLDPPGGAVTSEAVTPREQGSQLPWGSCSFQGPHLVTGKGLRSQEAEQEAQTIHEENVARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSPSRTHEQAGEKASGEQRPGGPSVEVTGEELIMPASAREPRQEDELEPGAPALALPVTRHKEWLHMDTVELEKLQWTQDLPPLRQQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISRAQAGEFGDRLVGSVLHLLLDAGFLFLLRFSLDDRVEGVIAAAVRALRALLVVPGDEKLLDSTFSWYLGAAVFPLMPSQEDKEDEDEDAEPLGEKAKRKTPEEGNRPPSDLARHDVIKGLLATNLLPRLRYLLEVTCPGPSVVLDILAVLIRLARHSLESATRVLECPRLIETVVREFLPTSWSRMEVGPTPSLHRVPCAPAMKLLRVLASAGRNIAARLLSGFDLRSRLYRFIAEAPQELALPPEEAETLSTEAFRLWAVAACYGQGGDLYRELYPVLMQTLQAVPKELSSHVPRPLALQRIASLLTLLTQLTLAASSTTPEPSSDSAEASLSATPSSITWTQVSGLQPLVEPCLRETLKLLPRPEMWSALGPVPPACLLFMDAYYQAWSQQPGLCPGDWLQDMERLSEELLLPLLSQPALGSLWDSLRCCSPLCNPQSCAPAPEALPSLVSLGCTGGPPHLSLAGSASPFPFLTALLSLFNTLGRIHKGLCGQLAAILAAPGVQNYFLQCMAPEVAPQLTPFTAWALRHEYHLQYLALSLAQRAATLQPVSAPSAALHHGMALALLGRLLPGSEHLAHELLLSCAFRLEFLPCLCPWSATRGLQKTTWPSFSSTSGLWLLVHSVHAGAPCSMLWLWLMSTASSSPKTPRAQMR", "length": 1074, "header": "tr|F1SSV8-1|A0A287AIU1_PIG Computationally mapped isoform of RNA polymerase II associated protein 1 OS=Sus scrofa OX=9823 GN=RPAP1 PE=3 SV=2 CANONICAL=A0A287AIU1-1" }, "locus": { "chromosome": "1", "start_pos": 129856130, "end_pos": 129839489, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005244.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005244.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005117.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005117.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 27, "start_aa": "Thr", "end_pos": 27, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr27", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 610, "start_aa": "Thr", "end_pos": 610, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr610", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 755, "start_aa": "Thr", "end_pos": 755, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr755", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSV8", "url": "https://www.uniprot.org/uniprotkb/F1SSV8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152008", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152008", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "transcription by RNA polymerase II", "id": "GO:0006366", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006366", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIU1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AIU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU1" }, { "id": "PF08620", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08620" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RPAP1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 356, "end_pos": 421, "start_aa": "Gln", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AIU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AIU1" }, { "id": "PF08621", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08621" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RPAP1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 225, "end_pos": 264, "start_aa": "Gln", 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AJG8-1", "uniprot_ac": "A0A287AJG8", "uniprot_id": "A0A287AJG8_PIG", "mass": { "chemical_mass": 283467.0, "monoisotopic_mass": 283467.0 }, "refseq": {}, "gene_names": [ { "name": "JMJD1C", "type": "recommended", "evidence": [ { "id": "A0A287AJG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG8" } ] } ], "protein_names": [ { "name": "Jumonji domain-containing protein 1C", "type": "recommended", "evidence": [ { "id": "A0A287AJG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AJG8", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "JMJD1C", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG8", "locus": { "chromosome": "14", "start_pos": 66640849, "end_pos": 66920324, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010226", "url": "https://www.ensembl.org/id/ENSSSCG00000010226" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010226", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010226", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054294", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054294", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054503", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054503", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12549", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12549", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12549:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12549:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22987", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22987", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22988", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22988", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22989", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22989", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-983231", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AJG8", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUK0", "url": "https://www.uniprot.org/uniprotkb/F1SUK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUK0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUK0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVETRPELVGKRFLCVAVGEEVQPERRQSGRCWRGWRAGVIRAVSHRDSRNPDLAVYVEFDDLEWDKREWVKVYEDFSTFLVEYHLIWARRKDPSQTQGSKSKQIQWPALTFKPLVEKSVPSTITAVEFLVDKQLDFLTEDSAFQPYQDDIDSLNPVLRDNPQLQEEVKVWVKEQKVQEIFMQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFTRTMIVMNDQVLEPQNVDPSMVQMTFLDDVVHSLLKGENIGITSRRRSRASQSSNTVHGHYTRAQANSPRPAMNSQAAVPKQNSHQQQRNIRPNKRKGSDSSIPDEEKMKEEKYDYIARGENPKGKNKQVMNKRRKPEEDEKKLNMKRLRTDNVSDFSESSDSENSNKRIINNSSEHKPENELKNKNTSRINGEEGKSQNNEKAGEETLIDSQPSWDQIQEDKKHEETEKQKSLDSQLQEKTVIHSSEQATLSDHNSNDLLLQECNMEKTHTVELLPKEKFVSKPPTPKCVIDITNDTNTEKVAQESSNTFGLQTLQKVDPIISDSKHSSANTKYLEITNQDSDQSWVGDVVKVDLTQSNVRNAPGNDNLNMEKEKNQYVSYISSLSAVSVTEDKLHKRSPPPETIKSKVNTSVDGHKTKSNPSPEIVKPKINHSPDSVKSKATHVNSQTAGERRLANKIEHELSRCSFHPVPTRGSTLETTKSPLIIDKNEHFTVYRDPALIGSETGANHISPFLSQHPFPLHSSSHRACLNPGSHHPALTPAPHLLAGSSSQTPLPAINTHPLTSGPHHSVHHPHLLPTVLPGVPPASLLGGHPRLETAHASSLSHLALAHQQQQQLLQHQSPHLLGQAHPSASYNQLGLYPIIWQYPNGTHAYSGLGLPSSKWVHPENTVNAESSLRRNSPSPWLHQPTPVTSADGIGLLSHIPVRPSSAEPHRPLKITAHSSPPLTKSLVDHHKEELERKAFIEPLRSVASTSAKNDLDINRSQTGKDSHLHRHFVDPVLNQLQRPPQETGERVNKYKEEHRRILQESIDVAPFTTKIKGLEGERDNYSRVAPSSSSPKSHAIKQDKDVECSVSDLYKMKHSVPQSLPQSNYFTTLSNTVVNEPPRSYPSKEVSNIYTEKQSNTLVAGASPQTLTSFISSLSKPPPLIKHQPENEGLVGKLPEHLPHQIASHSVTTFRNDRRSPTHLTVSSTNTLRSMPALHRAPVFHPPIHHSLERKESSYSSLSPPTLTPVMPVNAGGKVQESQKPPTLIPEPKDTQANFKSSSEQGLTEMWKSNNNLSREKAEWHVEKSSGKSQAAMASVIVRPPSSAKLDSVPAMQLASKDRVSERSSNGANQTDCLKPAEAGETGRIILPSVNSDSAHIKSEKNFQAVSRGSVPSSVMSAVNTMCSTKTDIVTSVAATTSVSSWGGSEIIYSLSNTILASKSLECTSSKTVSHSVAQTQECRVSTTAPVTPASSKTGSALQPSSGFSGTTDFIHLKKHKAALAAAQYKSSNVSETEPNAVKNQTSSASPLLDSTVVCSTINKANSVGNGQASQTSQPNYHTKLKKAWLTRHSEEDKNTNKMENSGNSVSEIIKPCSVNLIASTSNDVQNSVDSKIIVDKYVKDDKVRRKAKRTYESGSESGDSDESESKSEQRTKRQPKPTYKKKQNDLQKRKGEIEEDLKPNGVLSRSAKEKSKLKLQSNNNTGIPRSVLKDWRKVKKLKQTGESFLQDDSCCEIGPNLQKCRECRLIRSKKGEEPSHSPVFCRFYYFRRLSFSKNGVVRIDGFSSPDQYDDEAMSLWTHENYEDDELDLETSKYILDIIGDKFCQLVTSEKTALSWVKKDAKIAWKRAVRGVREMCDACEATLFNIHWVCQKCGFVVCLDCYKAKERKSSRDKELYAWMKCVKGQPHDHKHLMPTQIIPGSVLTDLLDVMHTLREKYGIKSHCHCTNKQVGNFSTMNGVSQVLQNVLNHSNKISLCMPESQQQNTPQKPESNGSSSPGSDGSTDSKFTPPEPQSPLHWLADLAEQKAREEKKENKEFALEKEIKEEGEQDNPDSPNSGTSPPVSQNNEQGSTLRDLLTTTAGKLRVGSTDAGIAFAPVYSMGTPSGKSGRTMPNILDDIIASVVENKIPPNKASRINVKTELKEEPKESRKSTMDENNKLYNDIPHSWICEKHILWLKDYKNINNWKLFKECWKHGQPAVVSGVHKKMNISLWKADSISLDFGDHQADLLNCKDSIVSNANVKEFWDGFEEVSKRQKAKSGETVVLKLKDCPSGEDFKTMMPARYEDLLKSLPLPEYCNPEGKFNLASHLPGFFVRPDLGPRLCSAYGVAAAKDHDIGTTNLHVEVSDVVNILVYVGIAKGNGILSKAGILKKFEEEDLDDILRKRLKDSSEIPGALWHIYAGKDVDKIREFLQKVSKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVKTCTLVQFLGDAIVLPAGTLHQVQNFHSCIQVTEDFVSPEHLVQSFHLTQELRLLKEEINYDDKLQVKNILYHAVKEMVRSLKIHEDEVEAMEEN", "length": 2534, "header": "tr|A0A287AJG8-1|A0A287AJG8_PIG Isoform 1 of Jumonji domain-containing protein 1C OS=Sus scrofa OX=9823 GN=JMJD1C PE=3 SV=2 CANONICAL=A0A287AJG8-1" }, "isoforms": [ { "isoform_ac": "A0A287AJG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG8/entry#A0A287AJG8-1", "sequence": { "sequence": "MAVETRPELVGKRFLCVAVGEEVQPERRQSGRCWRGWRAGVIRAVSHRDSRNPDLAVYVEFDDLEWDKREWVKVYEDFSTFLVEYHLIWARRKDPSQTQGSKSKQIQWPALTFKPLVEKSVPSTITAVEFLVDKQLDFLTEDSAFQPYQDDIDSLNPVLRDNPQLQEEVKVWVKEQKVQEIFMQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFTRTMIVMNDQVLEPQNVDPSMVQMTFLDDVVHSLLKGENIGITSRRRSRASQSSNTVHGHYTRAQANSPRPAMNSQAAVPKQNSHQQQRNIRPNKRKGSDSSIPDEEKMKEEKYDYIARGENPKGKNKQVMNKRRKPEEDEKKLNMKRLRTDNVSDFSESSDSENSNKRIINNSSEHKPENELKNKNTSRINGEEGKSQNNEKAGEETLIDSQPSWDQIQEDKKHEETEKQKSLDSQLQEKTVIHSSEQATLSDHNSNDLLLQECNMEKTHTVELLPKEKFVSKPPTPKCVIDITNDTNTEKVAQESSNTFGLQTLQKVDPIISDSKHSSANTKYLEITNQDSDQSWVGDVVKVDLTQSNVRNAPGNDNLNMEKEKNQYVSYISSLSAVSVTEDKLHKRSPPPETIKSKVNTSVDGHKTKSNPSPEIVKPKINHSPDSVKSKATHVNSQTAGERRLANKIEHELSRCSFHPVPTRGSTLETTKSPLIIDKNEHFTVYRDPALIGSETGANHISPFLSQHPFPLHSSSHRACLNPGSHHPALTPAPHLLAGSSSQTPLPAINTHPLTSGPHHSVHHPHLLPTVLPGVPPASLLGGHPRLETAHASSLSHLALAHQQQQQLLQHQSPHLLGQAHPSASYNQLGLYPIIWQYPNGTHAYSGLGLPSSKWVHPENTVNAESSLRRNSPSPWLHQPTPVTSADGIGLLSHIPVRPSSAEPHRPLKITAHSSPPLTKSLVDHHKEELERKAFIEPLRSVASTSAKNDLDINRSQTGKDSHLHRHFVDPVLNQLQRPPQETGERVNKYKEEHRRILQESIDVAPFTTKIKGLEGERDNYSRVAPSSSSPKSHAIKQDKDVECSVSDLYKMKHSVPQSLPQSNYFTTLSNTVVNEPPRSYPSKEVSNIYTEKQSNTLVAGASPQTLTSFISSLSKPPPLIKHQPENEGLVGKLPEHLPHQIASHSVTTFRNDRRSPTHLTVSSTNTLRSMPALHRAPVFHPPIHHSLERKESSYSSLSPPTLTPVMPVNAGGKVQESQKPPTLIPEPKDTQANFKSSSEQGLTEMWKSNNNLSREKAEWHVEKSSGKSQAAMASVIVRPPSSAKLDSVPAMQLASKDRVSERSSNGANQTDCLKPAEAGETGRIILPSVNSDSAHIKSEKNFQAVSRGSVPSSVMSAVNTMCSTKTDIVTSVAATTSVSSWGGSEIIYSLSNTILASKSLECTSSKTVSHSVAQTQECRVSTTAPVTPASSKTGSALQPSSGFSGTTDFIHLKKHKAALAAAQYKSSNVSETEPNAVKNQTSSASPLLDSTVVCSTINKANSVGNGQASQTSQPNYHTKLKKAWLTRHSEEDKNTNKMENSGNSVSEIIKPCSVNLIASTSNDVQNSVDSKIIVDKYVKDDKVRRKAKRTYESGSESGDSDESESKSEQRTKRQPKPTYKKKQNDLQKRKGEIEEDLKPNGVLSRSAKEKSKLKLQSNNNTGIPRSVLKDWRKVKKLKQTGESFLQDDSCCEIGPNLQKCRECRLIRSKKGEEPSHSPVFCRFYYFRRLSFSKNGVVRIDGFSSPDQYDDEAMSLWTHENYEDDELDLETSKYILDIIGDKFCQLVTSEKTALSWVKKDAKIAWKRAVRGVREMCDACEATLFNIHWVCQKCGFVVCLDCYKAKERKSSRDKELYAWMKCVKGQPHDHKHLMPTQIIPGSVLTDLLDVMHTLREKYGIKSHCHCTNKQVGNFSTMNGVSQVLQNVLNHSNKISLCMPESQQQNTPQKPESNGSSSPGSDGSTDSKFTPPEPQSPLHWLADLAEQKAREEKKENKEFALEKEIKEEGEQDNPDSPNSGTSPPVSQNNEQGSTLRDLLTTTAGKLRVGSTDAGIAFAPVYSMGTPSGKSGRTMPNILDDIIASVVENKIPPNKASRINVKTELKEEPKESRKSTMDENNKLYNDIPHSWICEKHILWLKDYKNINNWKLFKECWKHGQPAVVSGVHKKMNISLWKADSISLDFGDHQADLLNCKDSIVSNANVKEFWDGFEEVSKRQKAKSGETVVLKLKDCPSGEDFKTMMPARYEDLLKSLPLPEYCNPEGKFNLASHLPGFFVRPDLGPRLCSAYGVAAAKDHDIGTTNLHVEVSDVVNILVYVGIAKGNGILSKAGILKKFEEEDLDDILRKRLKDSSEIPGALWHIYAGKDVDKIREFLQKVSKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVKTCTLVQFLGDAIVLPAGTLHQVQNFHSCIQVTEDFVSPEHLVQSFHLTQELRLLKEEINYDDKLQVKNILYHAVKEMVRSLKIHEDEVEAMEEN", "length": 2534, "header": "tr|A0A287AJG8-1|A0A287AJG8_PIG Isoform 1 of Jumonji domain-containing protein 1C OS=Sus scrofa OX=9823 GN=JMJD1C PE=3 SV=2 CANONICAL=A0A287AJG8-1" }, "locus": { "chromosome": "14", "start_pos": 66920125, "end_pos": 66641672, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051269.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051269.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044031.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044031.2" } ] } }, { "isoform_ac": "F1SUK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG8/entry#F1SUK0-1", "sequence": { "sequence": "MQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFTRTMIVMNDQVLEPQNVDPSMVQMTFLDDVVHSLLKGENIGITSRRRSRASQSSNTVHGHYTRAQANSPRPAMNSQAAVPKQNSHQQQRNIRPNKRKGSDSSIPDEEKMKEEKYDYIARGENPKGKNKQVMNKRRKPEEDEKKLNMKRLRTDNVSDFSESSDSENSNKRIINNSSEHKPENELKNKNTSRINGEEGKSQNNEKAGEETLIDSQPSWDQIQEDKKHEETEKQKSLDSQLQEKTVIHSSEQATLSDHNSNDLLLQECNMEKTHTVELLPKEKFVSKPPTPKCVIDITNDTNTEKVAQESSNTFGLQTLQKVDPIISDSKHSSANTKYLEITNQDSDQSWVGDVVKVDLTQSNVRNAPGNDNLNMEKEKNQYVSYISSLSAVSVTEDKLHKRSPPPETIKSKVNTSVDGHKTKSNPSPEIVKPKINHSPDSVKSKATHVNSQTAGERRLANKIEHELSRCSFHPVPTRGSTLETTKSPLIIDKNEHFTVYRDPALIGSETGANHISPFLSQHPFPLHSSSHRACLNPGSHHPALTPAPHLLAGSSSQTPLPAINTHPLTSGPHHSVHHPHLLPTVLPGVPPASLLGGHPRLETAHASSLSHLALAHQQQQQLLQHQSPHLLGQAHPSASYNQLGLYPIIWQYPNGTHAYSGLGLPSSKWVHPENTVNAESSLRRNSPSPWLHQPTPVTSADGIGLLSHIPVRPSSAEPHRPLKITAHSSPPLTKSLVDHHKEELERKAFIEPLRSVASTSAKNDLDINRSQTGKDSHLHRHFVDPVLNQLQRPPQETGERVNKYKEEHRRILQESIDVAPFTTKIKGLEGERDNYSRVAPSSSSPKSHAIKQDKDVECSVSDLYKMKHSVPQSLPQSNYFTTLSNTVVNEPPRSYPSKEVSNIYTEKQSNTLVAGASPQTLTSFISSLSKPPPLIKHQPENEGLVGKLPEHLPHQIASHSVTTFRNDRRSPTHLTVSSTNTLRSMPALHRAPVFHPPIHHSLERKESSYSSLSPPTLTPVMPVNAGGKVQESQKPPTLIPEPKDTQANFKSSSEQGLTEMWKSNNNLSREKAEWHVEKSSGKSQAAMASVIVRPPSSAKLDSVPAMQLASKDRVSERSSNGANQTDCLKPAEAGETGRIILPSVNSDSAHIKSEKNFQAVSRGSVPSSVMSAVNTMCSTKTDIVTSVAATTSVSSWGGSEIIYSLSNTILASKSLECTSSKTVSHSVAQTQECRVSTTAPVTPASSKTGSALQPSSGFSGTTDFIHLKKHKAALAAAQYKSSNVSETEPNAVKNQTSSASPLLDSTVVCSTINKANSVGNGQASQTSQPNYHTKLKKAWLTRHSEEDKNTNKMENSGNSVSEIIKPCSVNLIASTSNDVQNSVDSKIIVDKYVKDDKVRRKAKRTYESGSESGDSDESESKSEQRTKRQPKPTYKKKQNDLQKRKGEIEEDLKPNGVLSRSAKEKSKLKLQSNNNTGIPRSVLKDWRKVKKLKQTGESFLQDDSCCEIGPNLQKCRECRLIRSKKGEEPSHSPVFCRFYYFRRLSFSKNGVVRIDGFSSPDQYDDEAMSLWTHENYEDDELDLETSKYILDIIGDKFCQLVTSEKTALSWVKKDAKIAWKRAVRGVREMCDACEATLFNIHWVCQKCGFVVCLDCYKAKERKSSRDKELYAWMKCVKGQPHDHKHLMPTQIIPGSVLTDLLDVMHTLREKYGIKSHCHCTNKQVGNFSTMNGVSQVLQNVLNHSNKISLCMPESQQQNTPQKPESNGSSSPGSDGSTDSKFTPPEPQSPLHWLADLAEQKAREEKKENKEFALEKEIKEEGEQDNPDSPNSGTSPPVSQNNEQGSTLRDLLTTTAGKLRVGSTDAGIAFAPVYSMGTPSGKSGRTMPNILDDIIASVVENKIPPNKASRINVKTELKEEPKESRKSTMDENNKLYNDIPHSWICEKHILWLKDYKNINNWKLFKECWKHGQPAVVSGVHKKMNISLWKADSISLDFGDHQADLLNCKDSIVSNANVKEFWDGFEEVSKRQKAKSGETVVLKLKDCPSGEDFKTMMPARYEDLLKSLPLPEYCNPEGKFNLASHLPGFFVRPDLGPRLCSAYGVAAAKDHDIGTTNLHVEVSDVVNILVYVGIAKGNGILSKAGILKKFEEEDLDDILRKRLKDSSEIPGALWHIYAGKDVDKIREFLQKVSKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVKTCTLVQFLGDAIVLPAGTLHQVQNFHSCIQVTEDFVSPEHLVQSFHLTQELRLLKEEINYDDKLQVKNILYHAVKEMVRSLKIHEDEVEAMEEN", "length": 2352, "header": "tr|F1SUK0-1|F1SUK0_PIG Computationally mapped isoform of Jumonji domain-containing protein 1C OS=Sus scrofa OX=9823 GN=JMJD1C PE=3 SV=4 CANONICAL=A0A287AJG8-1" }, "locus": { "chromosome": "14", "start_pos": 66689883, "end_pos": 66641672, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011192.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011192.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010901.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010901.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1455, "start_aa": "Thr", "end_pos": 1455, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1455", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2090, "start_aa": "Thr", "end_pos": 2090, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2090", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJG8", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-983231", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "resource": "Reactome", "description": "Factors involved in megakaryocyte development and platelet production" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": 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{ "id": "A0A287AJH2", "url": "https://www.uniprot.org/uniprotkb/A0A287AJH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBU6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBU6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"EAIFLRLPLVSSQRLQPVFPSSGSEAICRSPALSGWGGREASPRPGSSLHSSPLSPLAGPTAEDQAATVIQCSFRKLLARKELARRQQEHQDYLEQMERLQREAFVAQVRREQEAARRRREEKAAAEQRRREERQREARLLEAAFDGNLGEIQAVLREVEELLTREGVGSDAAGLARRLQRRVALVDCEDGGGNTPLSEAAAGGQPLAIQLLAEQGASPNSKGAFGRTPLYRAAFGGHLEAVEVLLKLGADPRVYADDGSTPEQVASLDAVASVLHLWDLSLTDVMLQNMEAERQRRAQEAEQHKEAEAKRVNLKVQQLAKAQQQCHKQLQQAYCELNRRVAEHDRCERRGAARAELTLQAIKDAEAQVDRLRQEAQKAEETLAQARLEQRERTQEEAPGLKCQVTELHDVLLRDVGDRIRADGRWPLVIDPSGQAAVFLRYQDTNYVDAVNPEHLRPERLRLALLGALRFGKPLVVDLREVDVFPAVQRQLEAVQPGLARELLSRALLERERYLSLLRPNDGPEYGPAQFQEARLGHFRLFFVTKVRWPPAEQLRVLLPVRVQLPGGGL", "length": 570, "header": "tr|A0A287AJH2-1|A0A287AJH2_PIG Isoform 1 of IQ motif and ankyrin repeat containing 1 OS=Sus scrofa OX=9823 GN=IQANK1 PE=4 SV=3 CANONICAL=A0A287AJH2-1" }, "locus": { "chromosome": "4", "start_pos": 866201, "end_pos": 852575, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037561.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037561.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044166.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044166.3" } ] } }, { "isoform_ac": "A0A8W4FBU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJH2/entry#A0A8W4FBU6-1", "sequence": { "sequence": "EAIFLRLPLVSSQRLQPVFPSSGSEAICRSPALSGWGGREASPRPGSSLHSSPLSPLAGPTAEDQAATVIQCSFRKLLARKELARRQQEHQDYLEQMERLQREAFVAQVRREQEAARRRREEKAAAEQRRREERQREARLLEAAFDGNLGEIQAVLREVEELLTREGVGSDAAGLARRLQRRVALVDCEDGGGNTPLSEAAAGGQPLAIQLLAEQGASPNSKGAFGRTPLYRAAFGGHLEAVEVLLKLGADPRVYADDGSTPEQVASLDAVASVLHLWDLSLTDVMLQNMEAERQRRAQEAEQHKEAEAKRVNLKVQQLAKAQQQCHKQLQQAYCELNRRVAEHDRCERRGAARAELTLQAIKDAEAQVDRLRQEAQKAEETLAQARLEQRERTQEEAPGLKCQVTELHDVLLRDVGDRIRADGRWPLVIDPSGQAAVFLRYQDTNYVDAVNPEHLRPERLRLALLGALRFGKPLVVDLREVDVFPAVQRQLEAVQPGLARELLSRALLERERYLSLLRPNDGPEYGPAQFQEALNFIFLEPQNRVFGCTNITSYSLARRAWLGRGG", "length": 567, "header": "tr|A0A8W4FBU6-1|A0A287AJH2_PIG Computationally mapped isoform of IQ motif and ankyrin repeat containing 1 OS=Sus scrofa OX=9823 GN=IQANK1 PE=4 SV=1 CANONICAL=A0A287AJH2-1" }, "locus": { "chromosome": "4", "start_pos": 866201, "end_pos": 852253, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102630.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102630.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076872.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076872.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 61, "start_aa": "Thr", "end_pos": 61, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr61", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FBU6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBU6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJH2", "url": "https://www.uniprot.org/uniprotkb/A0A287AJH2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJH2", "url": "https://www.uniprot.org/uniprotkb/A0A287AJH2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AJH2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 570, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AJH2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AJH2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 61 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ 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"field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AJI6-1", "uniprot_ac": "A0A287AJI6", "uniprot_id": "A0A287AJI6_PIG", "mass": { "chemical_mass": 26738.0, "monoisotopic_mass": 26738.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A287AJI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AJI6", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI6", "locus": {} } ], "crossref": [ { "id": "A0A287AJI6", "url": 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"An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJI6", "url": "https://www.uniprot.org/uniprotkb/A0A287AJI6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], 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Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R5E2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5E2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625281", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625281", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A3KN24-1", "protein_name": "RWD domain-containing protein 3", "gene_name": "RWDD3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAEPVRQELSALAAIFCGPDEWEVLSLSETDGAVFRILTKAEGFMDTDIPLQLVFHLPLSYPYCLPGIVVNSKHLTRAQCEIVKEKLLEQAETLLLEPMVHELVLWIQENLRHILKCPEAGGGSEKCSSAASMTVDDGLWMTLLHLDHMRAKAKYVKTVEKWASDLRLTGRLMFMGKIILILLQGDRNDIKEYLILQKTCKVDVDSSGKKCKEKMISVLFETKVQTEHKRFLAFEVKEYSSLDELQKEFETTGLKKLFSECVLRLVK", "length": 267 }, "evidence": [ { "id": "A0A287AJL7", "url": "https://omabrowser.org/oma/group/A0A287AJL7/", 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AJM9-1", "uniprot_ac": "A0A287AJM9", "uniprot_id": "A0A287AJM9_PIG", "mass": { "chemical_mass": 63910.0, "monoisotopic_mass": 63910.0 }, "refseq": {}, "gene_names": [ { "name": "FRMD3", "type": "recommended", "evidence": [ { "id": "A0A287AJM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJM9" } ] } ], "protein_names": [ { "name": "FERM domain-containing protein 3", "type": "recommended", "evidence": [ { "id": "A0A287AJM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJM9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative tumor suppressor gene that may be implicated in the origin and progression of lung cancer.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJM9", "url": "https://www.uniprot.org/uniprotkb/A0A287AJM9#function" }, { "database": "UniProtKB", "id": "ARBA00058056", "url": "https://www.uniprot.org/uniprotkb/ARBA00058056#function" }, { "database": "UniProtKB", "id": "A0A287AU79", "url": "https://www.uniprot.org/uniprotkb/A0A287AU79#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AJM9", "url": "https://www.uniprot.org/uniprotkb/A0A287AJM9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FRMD3", "url": "https://www.uniprot.org/uniprotkb/A0A287AJM9", "locus": { "chromosome": "10", "start_pos": 31748439, "end_pos": 31341128, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010962", "url": "https://www.ensembl.org/id/ENSSSCG00000010962" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010962", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010962", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17102", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17102", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519727", "url": "https://www.ncbi.nlm.nih.gov/gene/100519727", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000798", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000798", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014847", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014847", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035963", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035963", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CPLRQWM", "url": "https://omabrowser.org/oma/group/CPLRQWM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23280", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23280", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23280:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23280:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08736", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08736", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09379", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09379", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09380", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09380", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AJM9", "url": "https://www.uniprot.org/uniprotkb/A0A287AJM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJM9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AU79", "url": "https://www.uniprot.org/uniprotkb/A0A287AU79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AU79-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AU79-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480RNI8", "url": "https://www.uniprot.org/uniprotkb/A0A480RNI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480RNI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480RNI8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S4G4", "url": "https://www.uniprot.org/uniprotkb/F1S4G4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S4G4-1", "url": "https://www.uniprot.org/uniprotkb/F1S4G4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFASCHCVPRGRRTMKMIHFRSSSIKSLSQEMKCTIRLLDDSEISCHIQRETKGQFLIDHICNYYSLLEKDYFGIRYVDPEKQRHWLEPNKSISKQMKSHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCSFSDAAYLGACIVQAELGDYDPDEHPENYISEFEIFPKQSQKLERKIVEIHKNELRGQTPPVAEFNLLLKAHTLETYGVDPHPCKDSTGTTTFLGFTAAGFVVFQGNKRIHLIKWPDVCKLKFEGKTFYVIGTQKEKKAMLAFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTVSSSKIFFKGSRFRYSGKVAKEVVEASSKIQREPPEVHRANMTQSRSSHSLNKQLIINMEPLQPLLPSPSEQEEELPLGEGVPLPKEDNISAPLISSSPVKESREYEEPSSEEEDKIKEEPLTISELAYNPSASLLPTPVDDDEIDMLFDCPSRLELEREDTDSFEELEADENAFLMAEEEELKEARQALSWSYDILSGHIRVNPLVKSFSRLLVVGLGLLLFVFPLLLLLLESVYMQ", "length": 556, "header": "tr|A0A287AJM9-1|A0A287AJM9_PIG Isoform 1 of FERM domain-containing protein 3 OS=Sus scrofa OX=9823 GN=FRMD3 PE=4 SV=1 CANONICAL=A0A287AJM9-1" }, "isoforms": [ { "isoform_ac": "A0A287AJM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJM9/entry#A0A287AJM9-1", "sequence": { "sequence": "MFASCHCVPRGRRTMKMIHFRSSSIKSLSQEMKCTIRLLDDSEISCHIQRETKGQFLIDHICNYYSLLEKDYFGIRYVDPEKQRHWLEPNKSISKQMKSHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCSFSDAAYLGACIVQAELGDYDPDEHPENYISEFEIFPKQSQKLERKIVEIHKNELRGQTPPVAEFNLLLKAHTLETYGVDPHPCKDSTGTTTFLGFTAAGFVVFQGNKRIHLIKWPDVCKLKFEGKTFYVIGTQKEKKAMLAFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTVSSSKIFFKGSRFRYSGKVAKEVVEASSKIQREPPEVHRANMTQSRSSHSLNKQLIINMEPLQPLLPSPSEQEEELPLGEGVPLPKEDNISAPLISSSPVKESREYEEPSSEEEDKIKEEPLTISELAYNPSASLLPTPVDDDEIDMLFDCPSRLELEREDTDSFEELEADENAFLMAEEEELKEARQALSWSYDILSGHIRVNPLVKSFSRLLVVGLGLLLFVFPLLLLLLESVYMQ", "length": 556, "header": "tr|A0A287AJM9-1|A0A287AJM9_PIG Isoform 1 of FERM domain-containing protein 3 OS=Sus scrofa OX=9823 GN=FRMD3 PE=4 SV=1 CANONICAL=A0A287AJM9-1" }, "locus": { "chromosome": "10", "start_pos": 31748137, "end_pos": 31416977, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060006.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060006.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044212.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044212.1" } ] } }, { "isoform_ac": "A0A287AU79-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJM9/entry#A0A287AU79-1", "sequence": { "sequence": "MFASCHCVPRGRRTMKMIHFRSSSIKSLSQEMKCTIRLLDDSEISCHIQRETKGQFLIDHICNYYSLLEKDYFGIRYVDPEKQRHWLEPNKSISKQMKSHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCSFSDAAYLGACIVQAELGDYDPDEHPENYISEFEIFPKQSQKLERKIVEIHKNELRGQTPPVAEFNLLLKAHTLETYGVDPHPCKDSTGTTTFLGFTAAGFVVFQGNKRIHLIKWPDVCKLKFEGKTFYVIGTQKEKKAMLAFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTVSSSKIFFKGSRFRYSGKVAKEVVEASSKIQREPPEVHRANMTQSRSSHSLNKQLIINMEPLQPLLPSPSEQEEELPLGEGVPLPKEDNISAPLISSSPVKESREYEEPSSEEEDKIKEEPLTISELAYNPSASLLPTPVDDDEIDMLFDCPSRLELEREDTDSFEELEADENAFLMAEEEELKEARQALSWSYDILSGHIRVNPLVKSFSRLLVVGLGLLLFVFPLLLLLLESGIDLSFLCEIRQTPEFEQFHYEYYCPLKEWVAGKVNLVLYMLGCS", "length": 597, "header": "tr|A0A287AU79-1|A0A287AU79_PIG Computationally mapped isoform of FERM domain-containing protein 3 OS=Sus scrofa OX=9823 GN=FRMD3 PE=4 SV=1 CANONICAL=A0A287AJM9-1" }, "locus": { "chromosome": "10", "start_pos": 31743283, "end_pos": 31416977, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051323.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051323.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047474.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047474.1" } ] } }, { "isoform_ac": "A0A480RNI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJM9/entry#A0A480RNI8-1", "sequence": { "sequence": "MAKCLVKIQTRRGLRLQLVNHCKSDVFVRLLRHGSKITARNTGVPLPKEDNISAPLISSSPVKESREYEEPSSEEEDKIKEEPLTISELAYNPSASLLPTPVDDDEIDMLFDCPSRLELEREDTDSFEELEADENAFLMAEEEELKEARQALSWSYDILSGHIRVNPLVKSFSRLLVVGLGLLLFVFPLLLLLLESVYMQ", "length": 200, "header": "tr|A0A480RNI8-1|A0A480RNI8_PIG Computationally mapped isoform of FERM domain containing 3 OS=Sus scrofa OX=9823 GN=FRMD3 PE=4 SV=1 CANONICAL=A0A287AJM9-1" }, "locus": { "chromosome": "10", "start_pos": 31748137, "end_pos": 31714222, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058521.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058521.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049560.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049560.2" } ] } }, { "isoform_ac": "A0A5G2RDP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJM9/entry#A0A5G2RDP3-1", "sequence": { "sequence": "PQLSKRETKGQFLIDHICNYYSLLEKDYFGIRYVDPEKQRHWLEPNKSISKQMKSHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCSFSDAAYLGACIVQAELGDYDPDEHPENYISEFEIFPKQSQKLERKIVEIHKNELRGQTPPVAEFNLLLKAHTLETYGVDPHPCKDSTGTTTFLGFTAAGFVVFQGNKRIHLIKWPDVCKLKFEGKTFYVIGTQKEKKAMLAFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTVSSSKIFFKGSRFRYSGKVAKEVVEASSKIQREPPEVHRANMTQSRSSHSLNKQLIINMEPLQPLLPSPSEQEEELPLGEGVPLPKEDNISAPLISSSPVKESREYEEPSSEEEDKIKEEPLTISELAYNPSASLLPTPVDDDEIDMLFDCPSRLELEREDTDSFEELEADENAFLMAEEEELKEARQALSWSYDILSGHIRVNPLVKSFSRLLVVGLGLLLFVFPLLLLLLESGIDLSFLCEIRQTPEFEQFHYEYYCPLKEWVAGKVNLVLYMLGCS", "length": 553, "header": "tr|A0A5G2RDP3-1|A0A287AJM9_PIG Computationally mapped isoform of FERM domain-containing protein 3 OS=Sus scrofa OX=9823 GN=FRMD3 PE=4 SV=1 CANONICAL=A0A287AJM9-1" }, "locus": { "chromosome": "10", "start_pos": 31743283, "end_pos": 31492860, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066565.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066565.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072545.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072545.1" } ] } }, { "isoform_ac": "F1S4G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJM9/entry#F1S4G4-1", "sequence": { "sequence": "MSPVKVGCSSSKRWLPSSCDHICNYYSLLEKDYFGIRYVDPEKQRHWLEPNKSISKQMKSHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCSFSDAAYLGACIVQAELGDYDPDEHPENYISEFEIFPKQSQKLERKIVEIHKNELRGQTPPVAEFNLLLKAHTLETYGVDPHPCKDSTGTTTFLGFTAAGFVVFQGNKRIHLIKWPDVCKLKFEGKTFYVIGTQKEKKAMLAFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTVSSSKIFFKGSRFRYSGKVAKEVVEASSKIQREPPEVHRANMTQSRSSHSLNKQLIINMEPLQPLLPSPSEQEEELPLGEGVPLPKEDNISAPLISSSPVKESREYEEPSSEEEDKIKEEPLTISELAYNPSASLLPTPVDDDEIDMLFDCPSRLELEREDTDSFEELEADENAFLMAEEEELKEARQALSWSYDILSGHIRVNPLVKSFSRLLVVGLGLLLFVFPLLLLLLESGIDLSFLCEIRQTPEFEQFHYEYYCPLKEWVAGKVNLVLYMLGCS", "length": 558, "header": "tr|F1S4G4-1|A0A287AJM9_PIG Computationally mapped isoform of FERM domain-containing protein 3 OS=Sus scrofa OX=9823 GN=FRMD3 PE=4 SV=4 CANONICAL=A0A287AJM9-1" }, "locus": { "chromosome": "10", "start_pos": 31743283, "end_pos": 31370527, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011999.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011999.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011691.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011691.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RDP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDP3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZT99-1", "protein_name": "FERM domain-containing protein 3", "gene_name": "Frmd3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFASCHCAPRGRRTMKMIHFRSSSIKSLNQEMKCTIRLLDDSEVSCRIQRETKGQFLIEYICNYYSLLEKDYFGIRYVDPEKQRHWLEPNKSIFKQMKSHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCSFTDAAYLGACIVQAEFGDYYPDEHPENYISEFEIFPKQSQKLERKIMEIHNNELRGQSPAMAEFNLLLKAHTLETYGVDPHPCKDSRGATAFLGFTAAGFVVFQGNKRIHLRKWSDVCKLKFEGKTFYVIGSQKEKNAVLAFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTVSSSKIFFKGSRFRYSGKVAKEVVEASSKIQRDPPEVHRVNITQSRSFHSLNKQLIINMEPLQPLLPSPTEQEEEVPMGEGTPLPKMDVSESLISSSPVKGAQCADPPDEEEDRLKEDPLTISELAYNPSASLLPTPVDDDEINMLFDCPSRLELEREDTDSFEELEADENAFLIAEEEELKEARQALSWSYSILTGRIWVNPLVKSFSRLLVVGLGLLLFVFPLLLLLLESGIDLSFLCEIRQTPEFEQFHYEYYCPLKEWVAGKVNIFLYMLGCS", "length": 595 }, "evidence": [ { "id": "A0A287AJM9", "url": "https://omabrowser.org/oma/group/A0A287AJM9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A2A2Y4-1", "protein_name": "FERM domain-containing protein 3", "gene_name": "FRMD3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFASCHCVPRGRRTMKMIHFRSSSVKSLSQEMRCTIRLLDDSEISCHIQRETKGQFLIDHICNYYSLLEKDYFGIRYVDPEKQRHWLEPNKSIFKQMKTHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCSFSDAAYLGACIVQAELGDYDPDEHPENYISEFEIFPKQSQKLERKIVEIHKNELRGQSPPVAEFNLLLKAHTLETYGVDPHPCKDSTGTTTFLGFTAAGFVVFQGNKRIHLIKWPDVCKLKFEGKTFYVIGTQKEKKAMLAFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTVSSSKIFFKGSRFRYSGKVAKEVVEASSKIQREPPEVHRANITQSRSSHSLNKQLIINMEPLQPLLPSPSEQEEELPLGEGVPLPKEENISAPLISSSPVKAAREYEDPPSEEEDKIKEEPLTISELVYNPSASLLPTPVDDDEIDMLFDCPSRLELEREDTDSFEDLEADENAFLIAEEEELKEARRALSWSYDILTGHIRVNPLVKSFSRLLVVGLGLLLFVFPLLLLLLESGIDLSFLCEIRQTPEFEQFHYEYYCPLKEWVAGKVHLILYMLGCS", "length": 597 }, "evidence": [ { "id": "A0A287AJM9", "url": "https://omabrowser.org/oma/group/A0A287AJM9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F1MLE0-1", "protein_name": "FERM domain-containing protein 3", "gene_name": "FRMD3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFASCYCVPRGRRTMKMIHFRSSSIKSLSQEMKCTIRLLDDSEISCHIQRETKGQFLIDHICNYYSLLEKDYFGIRYVDPEKQRHWLEPNKSISKQMKSHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCSFSDAAYLGACIVQAELGDYDPDEHPENYISEFEIFPKQSQKLERKIVEIHKNELRGQSPPVAEFNLLLKAHTLETYGVDPHPCKDSTGTTTFLGFTAAGFVVFQGNKRIHLLKWPDVCKLKFEGKTFYVIGTQKEKKAVLAFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTVSSSKIFFKGSRFRYSGKVAKEVVEASSKIQREPPEVHRTNISQSRSSHSLNKQLIINMEPLQPLLPSPSEQEEELPPGEGVPLPKEDISAPLISSSPVKESHEYEEPSSEEEDKIKEEPLTISELAYNPSASLLPTPVDDDEIDMLFDCPSRLELEREDTDSFEELEADENAFLMAEEEEMKEARQALSWSYDILSGTIRVNPLVKSFSRLLVVGLGLLLFVFPLLLLLLESVYLQ", "length": 555 }, "evidence": [ { "id": "A0A287AJM9", "url": "https://omabrowser.org/oma/group/A0A287AJM9/", "database": "OMA" } ], 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"database": "Ensembl Peptide", "id": "ENSSSCP00000046902.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046902.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJN5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJN5" } ], "reference": [ { 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"MSKKRKWDDDYVRYWFTCTTEVDGTQRPQCVLCNSVFSNADLRPSKLSDHFNRRHGGVGGHDLNSLKHVPAPSDQSETLKAFGVASQEDALLQASYQFAYLCAKEKNPHTIAEKLVKPCALEIAQIVLGPDAQKKLQQVPLSDDVIHSRIEEMSQDILQQILEDIKASPLKVGIQLAETTDMDDCSRLMAFVRYIKEREIIEEFLFCEPLQLTMKGKDVFCLVRDFFLKHKISLDVCGSVCTDGASSMLGENSEFAACVKKEVPHIVITHCLLNPHELVTKTLPSKLKDALFTVVKVINFIKGRAPNHRLFQAFFEEIGIEYSVLLFHTEMRWLSRGQILTHIFEMYEEINQFLHHQSSNLVDGFENKDFKIHLAYLADLFKHLNELGASMQRTGMNTVSAREKLSAFVRKFPFWLKRIEKRNFTNFPFLEEIIVSDNEALCIAAEITLHLQQLSSSFHEYFSVGDLDEASKWILDPFLFNLDFVDDGYLMKNDLAELRASGQILMEFETMKLEDFWCAQFTVFPSLSKTALEILIPFATTYLCELGFSSLLHFKTKSRSCLNMSDDIRVAISKKVPRFSDIIEQKLQLQQKSV", "length": 594, "header": "tr|A0A287AJN8-1|A0A287AJN8_PIG Isoform 1 of Family with sequence similarity 200 member C OS=Sus scrofa OX=9823 GN=FAM200C PE=4 SV=1 CANONICAL=A0A287AJN8-1" }, "isoforms": [ { "isoform_ac": "A0A287AJN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJN8/entry#A0A287AJN8-1", "sequence": { "sequence": "MSKKRKWDDDYVRYWFTCTTEVDGTQRPQCVLCNSVFSNADLRPSKLSDHFNRRHGGVGGHDLNSLKHVPAPSDQSETLKAFGVASQEDALLQASYQFAYLCAKEKNPHTIAEKLVKPCALEIAQIVLGPDAQKKLQQVPLSDDVIHSRIEEMSQDILQQILEDIKASPLKVGIQLAETTDMDDCSRLMAFVRYIKEREIIEEFLFCEPLQLTMKGKDVFCLVRDFFLKHKISLDVCGSVCTDGASSMLGENSEFAACVKKEVPHIVITHCLLNPHELVTKTLPSKLKDALFTVVKVINFIKGRAPNHRLFQAFFEEIGIEYSVLLFHTEMRWLSRGQILTHIFEMYEEINQFLHHQSSNLVDGFENKDFKIHLAYLADLFKHLNELGASMQRTGMNTVSAREKLSAFVRKFPFWLKRIEKRNFTNFPFLEEIIVSDNEALCIAAEITLHLQQLSSSFHEYFSVGDLDEASKWILDPFLFNLDFVDDGYLMKNDLAELRASGQILMEFETMKLEDFWCAQFTVFPSLSKTALEILIPFATTYLCELGFSSLLHFKTKSRSCLNMSDDIRVAISKKVPRFSDIIEQKLQLQQKSV", "length": 594, "header": "tr|A0A287AJN8-1|A0A287AJN8_PIG Isoform 1 of Family with sequence similarity 200 member C OS=Sus scrofa OX=9823 GN=FAM200C PE=4 SV=1 CANONICAL=A0A287AJN8-1" }, "locus": { "chromosome": "16", "start_pos": 63144622, "end_pos": 63142841, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058179.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058179.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044105.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044105.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJN8", "url": "https://www.uniprot.org/uniprotkb/A0A287AJN8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A4Z945-1", "protein_name": "Protein FAM200C", "gene_name": "FAM200C", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSKKRKWDDDYVRYWFTCVTEIDGTQRPQCVLCNSVFSNADLRPSKLSDHFNRQHGGIGGHDLSSLKHVPVPADQSETLKTFGVASQEDALLQASYQFAYLCAKEKNPHTIAEKLVKPCALEIAQIVLGPDAQKKLQQVPLSDDVIHSRIDEMSQDILQQVLEDIKASPLKVGIQLAETTDMDDCSQLMAFVRYIREREIVEEFLFCEPLQLTMKGKDVFNLFRDFFLKHKIALDVCGSVCTDGASSMLGENSEFVCCVKKEVPHIVITHCLVNPHTLVTKTLPTKLRDALFTVVRVINFIKGRAPNHRLFQAFFEEIGIEYSVLLFHTEMRWLSRGQILTHIFEMHEEINQFLHHQSSNLVDGFENKEFKIHLAYLADLFKHLNELSASMQRTGMNTVSAREKLSAFVRKFPFWLKRIEKRNFTNFPFLEEIVVSDNEALCIAAEITLHLQQLSSFFNGYFSVGDLDEASKWILDPFLFNLDFVDDGYLVKNDLAELRASGQILMEFETMKLEDFWCAQFTVFPSLAKTALEILIPFATTYLCELGFSSLLHFKTKSRSCLNMSDDIRVAISKKVPRFSDIIEQKLQLQQKSL", "length": 594 }, "evidence": [ { 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"https://www.uniprot.org/uniprotkb/A0A287AJP5/entry#names_and_taxonomy" } ] }, { "name": "vesicle-trafficking protein SEC22c", "type": "synonym", "evidence": [ { "id": "NP_001230482", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230482" } ] } ], "function": [ { "annotation": "May be involved in vesicle transport between the ER and the Golgi complex.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFC5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFC5#function" }, { "database": "UniProtKB", "id": "ARBA00003595", "url": "https://www.uniprot.org/uniprotkb/ARBA00003595#function" }, { "database": "UniProtKB", "id": "A0A5G2QQ06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ06#function" }, { "database": "UniProtKB", "id": "A0A287AJP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJP5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AJP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJP5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SEC22C", "url": "https://www.uniprot.org/uniprotkb/A0A287AJP5", "locus": { "chromosome": "13", "start_pos": 26083226, "end_pos": 26107223, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000034200", "url": "https://www.ensembl.org/id/ENSSSCG00000034200" } ] } } ], "crossref": [ { "id": "ENSSSCG00000034200", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034200", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14824", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14824", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155377", "url": "https://www.ncbi.nlm.nih.gov/gene/100155377", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010908", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010908", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043546", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043546", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155377", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155377", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QDRTNDC", "url": "https://omabrowser.org/oma/group/QDRTNDC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AJP5", "url": "https://www.orthodb.org/?gene=A0A287AJP5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46258", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46258", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46258:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46258:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13774", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13774", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25970", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25970", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230482", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230482", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AJP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFC5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFC5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ06-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ06-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSMILFACVVRVRDGLPLSASTDFYHTQDFLECRRRLKTLALRLAQYPGRGSAKGRDFSIHFSSSRDVACMAICSHQCPSAMAFYFLETLWWEFTASYDTTCIGLASRPYAFLEFDSVIQKVKWHFNYVSSTQMENSLEKIQEDLKFQPPVVLTLEDTDVANGVMNGHTRMHLEPAPNFRMEPVTALGVLSLILNIMCAALNLIRGIHLAEHSLQVAHEEIGNILAFLIPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQILFHIGVAFLSSHQILTRQLQEKQSDCGV", "length": 303, "header": "tr|A0A287AJP5-1|A0A287AJP5_PIG Isoform 1 of Vesicle-trafficking protein SEC22c OS=Sus scrofa OX=9823 GN=SEC22C PE=3 SV=1 CANONICAL=A0A287AJP5-1" }, "isoforms": [ { "isoform_ac": "A0A287AJP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJP5/entry#A0A287AJP5-1", "sequence": { "sequence": "MSMILFACVVRVRDGLPLSASTDFYHTQDFLECRRRLKTLALRLAQYPGRGSAKGRDFSIHFSSSRDVACMAICSHQCPSAMAFYFLETLWWEFTASYDTTCIGLASRPYAFLEFDSVIQKVKWHFNYVSSTQMENSLEKIQEDLKFQPPVVLTLEDTDVANGVMNGHTRMHLEPAPNFRMEPVTALGVLSLILNIMCAALNLIRGIHLAEHSLQVAHEEIGNILAFLIPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQILFHIGVAFLSSHQILTRQLQEKQSDCGV", "length": 303, "header": "tr|A0A287AJP5-1|A0A287AJP5_PIG Isoform 1 of Vesicle-trafficking protein SEC22c OS=Sus scrofa OX=9823 GN=SEC22C PE=3 SV=1 CANONICAL=A0A287AJP5-1" }, "locus": { "chromosome": "13", "start_pos": 26099563, "end_pos": 26087567, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040625.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040625.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044116.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044116.1" } ] } }, { "isoform_ac": "A0A5G2QFC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJP5/entry#A0A5G2QFC5-1", "sequence": { "sequence": "MSMILFACVVRVRDGLPLSASTDFYHTQDFLECRRRLKTLALRLAQYPGRGSAKGRDFSIHFSSSRDVACMAICSHQCPSAMAFYFLETLWWEFTASYDTTCIGLASRPYAFLEFDSVIQKVKWHFNYVSSTQMENSLEKIQEDLKFQPPVVLTLEDTDVANGVMNGHTRMHLEPAPNFRMEPVTALGVLSLILNIMCAALNLIRGIHLAEHSLQDPGSQFCWLDQTS", "length": 228, "header": "tr|A0A5G2QFC5-1|A0A287AJP5_PIG Computationally mapped isoform of Vesicle-trafficking protein SEC22c OS=Sus scrofa OX=9823 GN=SEC22C PE=3 SV=1 CANONICAL=A0A287AJP5-1" }, "locus": { "chromosome": "13", "start_pos": 26099563, "end_pos": 26083226, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089488.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089488.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060743.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060743.1" } ] } }, { "isoform_ac": "A0A5G2QQ06-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJP5/entry#A0A5G2QQ06-1", "sequence": { "sequence": "MSMILFACVVRVRDGLPLSASTDFYHTQDFLECRRRLKTLALRLAQYPGRGSAKGRDFSIHFSSSRDVACMAICSHQCPSAMAFYFLETLWWEFTASYDTTCIGLASRPYAFLEFDSVIQKVKWHFNYVSSTQMENSLEKIQEDLKFQPPVVLTLEDTDVANGVMNGHTRMHLEPAPNFRMEPVTALGVLSLILNIMCAALNLIRGIHLAEHSLQVAHEEIGNILAFLIPFVACIFQDPGSQFCWLDQTS", "length": 250, "header": "tr|A0A5G2QQ06-1|A0A287AJP5_PIG Computationally mapped isoform of Vesicle-trafficking protein SEC22c OS=Sus scrofa OX=9823 GN=SEC22C PE=3 SV=1 CANONICAL=A0A287AJP5-1" }, "locus": { "chromosome": "13", "start_pos": 26099563, "end_pos": 26083226, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074439.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074439.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066805.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066805.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFC5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFC5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155377", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155377", "resource": "KEGG Pathway" }, { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1ABL7-1", "protein_name": "SEC22 homolog C, vesicle trafficking protein", "gene_name": "SEC22C", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSMIFFACVVRVRDGLPLSASTDFHFNQDFLECRKKLKALSSVLARYPSRGTAKGRDLSIHFLSSGEIACMAICSSSYSTIMAFCFLEELQWAFAASYDTTSINLASRPYAFLEFDNAIQKVKHRFNYMSGSATKVSWEKVEEELRLQPPVQLKLEDAELMNGMANGGHAGVHVEVAPAYRMQRVTPLGILSLVLNIMCGALNLIRGVHLAEHSFQEDYEGIGNVVAFFLPFLACVFQCYLYLYYSSTRKVKTFVLFFSVCLCNIYLYGLRNLWQIAFHIGVASLSSYQILTRQLMEKQPDCGV", "length": 304 }, "evidence": [ { "id": "A0A287AJP5", "url": "https://omabrowser.org/oma/group/A0A287AJP5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7FXZ0-1", "protein_name": "Vesicle-trafficking protein SEC22c isoform X1", "gene_name": "Sec22c", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPMILFASVVRVRDGLPLSASTDFYHAQEFLECRRQLKALARRLPQYPGRGSAESRDFNIYFSSSGGVACMAICSRQCPAAMVFCFLETLWWDFTASYDTTCIGLASRPYAFLEFDSVIQKTKWRFNHMSSSQMKSGLEKIQEELELQPPAMLSIEGTDVANGMLNGHTPVHSEPAPNLRMEPVTALGVLSLVLNILCAALNLVRGVHLAEHSLQVAQEEVGNILAFFIPSVACIVQSSQDSEGGADSGLHLPGQHVPARAEEHLASPLSHRSGFSVLVSDPDQTAAGEAVRLWSVRTASRSERSL", "length": 306 }, "evidence": [ { "id": "A0A287AJP5", "url": "https://omabrowser.org/oma/group/A0A287AJP5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E9QFN4-1", "protein_name": "Vesicle-trafficking protein SEC22c isoform X1", "gene_name": "sec22c", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSLILFAFVVRVRDGLPLSASTDFLHNKELQEKKQQIKIISKSLNVLPERGTVKGHELNIHFLSCEGVSYMSVCACTLPAATAFCFLEDLRWEFTACFDNSAVAMANRPYPFLEFDSAIQKLQQHYNQKGGPSLEVTLAEVQEDLRSSPPQVLTMEDVVLSNGAANGHVEQTTASGQSQRLEPVSAPGILSLVLNIMCAALNLIRGVHLIEYTFQDDYDGLWNVVAFLVAFLCCVCQCHLYLFHTCQKRLKSFTLLTLIVLCNAFLFGPRNIWQLVFHLSVACLSTLLTLHRKLQDRNTDCGV", "length": 303 }, "evidence": [ { "id": "A0A287AJP5", "url": "https://omabrowser.org/oma/group/A0A287AJP5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ2-1", "protein_name": "Vesicle-trafficking protein SEC22c", "gene_name": "SEC22C", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSLILFACVVRVRDGLPLSASTDFYHSQDFLECRRRLKTLALRLAQYPGRGSAEGCDFSIHFSSSRDVACMAICSLQCPAAMAFCFLETLWWEFTASYDTTCVGLASRPYAFLEFDNVIQKVKWHFNYVSSTQMDSSLGKIQEELKFQPPVVLTLEDTDVANGVMNGHTLMHLEPAPSFRMEPVTALGILSLILNIMCAALNLIRGIHLAEHSLQVAHEEIGNILAFLIPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNVYLHGLRNLWQILFHIGVAFLSSHQILTRQLQDKQSDCGV", "length": 303 }, "evidence": [ { "id": "A0A287AJP5", "url": "https://omabrowser.org/oma/group/A0A287AJP5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BXT9-1", "protein_name": "Vesicle-trafficking protein SEC22c", "gene_name": "Sec22c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMILFASIVRVRDGLPLSASTDFYYAQEFLECRRQLKTLAQRLARHPGRGCAESCDFLIYFSSSGDVACMAICSRQCPAAMAFCFLEALWWDFIASYDTTCVGLASRPYAFLEFDSVIQKTKWHFNHMSSSQMKSGLEKIQEELEFQPPAVLSLEDTDVANGMLNGHTPVHSEPAPNLRMKPVTALGVLSLVLNIMCAALNLIRGVHLAEHSLQVAQEEVGNILAFFIPSVACIVQCYLYLFYSPARTLKVLLMLASICLGNAYLHGLRNTWQILFHVGVAFLSSYQILTRQLQERQSDYGV", "length": 303 }, "evidence": [ { "id": "A0A287AJP5", "url": "https://omabrowser.org/oma/group/A0A287AJP5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BRL7-1", "protein_name": "Vesicle-trafficking protein SEC22c", "gene_name": "SEC22C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSIHFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSIIQKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDVANGVMNGHTPMHLEPAPNFRMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQVAHEEIGNILAFLVPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQILFHIGVAFLSSYQILTRQLQEKQSDCGV", "length": 303 }, "evidence": [ { "id": "A0A287AJP5", "url": "https://omabrowser.org/oma/group/A0A287AJP5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJP5" } ], "pmid": "" }, { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJP5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AJP5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AJP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJP5" }, { "id": "PS50859", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50859" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Longin", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 119, "start_aa": "Cys", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16019", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16019:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16019:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03909", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03909", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AJV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APT9", "url": "https://www.uniprot.org/uniprotkb/A0A287APT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APT9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE92-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE92-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1YYY9", "url": "https://www.uniprot.org/uniprotkb/A0A8D1YYY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1YYY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1YYY9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDU6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIH9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIH9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7U1", "url": "https://www.uniprot.org/uniprotkb/I3L7U1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7U1-1", "url": "https://www.uniprot.org/uniprotkb/I3L7U1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VFHREDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKEKLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISEEPDWEEEEEELVGSSPTSPKEVKVPVARTSTSLEGGPGPQSPCEENLVTPTEPPTEVTPSESSESISLVTQIAKPAPASEAAVMPKDLSQKLLEASLEEQGLAVDVGETGPPPLAQSKPNTPAGRPSGPEPRPPARVETLREEVLTDLRVFELNSDSGKSTPSNNGKKGSSTDISEDWEKDFDLDMTEEEVQMALSKVDASGEVSGPDWPQGGKPNDPRSQDSPHQAQVSPQDGSLLLARWQAFGKGAQASHSGPEQL", "length": 475, "header": "tr|A0A287AJV7-1|A0A287AJV7_PIG Isoform 1 of BSD domain containing 1 OS=Sus scrofa OX=9823 GN=BSDC1 PE=1 SV=3 CANONICAL=A0A287AJV7-1" }, "isoforms": [ { "isoform_ac": "A0A287AJV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJV7/entry#A0A287AJV7-1", "sequence": { "sequence": "VFHREDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKEKLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISEEPDWEEEEEELVGSSPTSPKEVKVPVARTSTSLEGGPGPQSPCEENLVTPTEPPTEVTPSESSESISLVTQIAKPAPASEAAVMPKDLSQKLLEASLEEQGLAVDVGETGPPPLAQSKPNTPAGRPSGPEPRPPARVETLREEVLTDLRVFELNSDSGKSTPSNNGKKGSSTDISEDWEKDFDLDMTEEEVQMALSKVDASGEVSGPDWPQGGKPNDPRSQDSPHQAQVSPQDGSLLLARWQAFGKGAQASHSGPEQL", "length": 475, "header": "tr|A0A287AJV7-1|A0A287AJV7_PIG Isoform 1 of BSD domain containing 1 OS=Sus scrofa OX=9823 GN=BSDC1 PE=1 SV=3 CANONICAL=A0A287AJV7-1" }, "locus": { "chromosome": "6", "start_pos": 88838555, "end_pos": 88815510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037070.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037070.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044293.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044293.3" } ] } }, { "isoform_ac": "A0A287APT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJV7/entry#A0A287APT9-1", "sequence": { "sequence": "MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKEKLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISEEPDWEEEEEELVGSSPTSPKEVKVPVARTSTSLEGGPGPQSPCEENLVTPTEPPTEVTPSESSESISLVTQIAKPAPASEAAVMPKDLSQKLLEASLEEQGLAVDVGETGPPPLAQSKPNTPAGRPSGPEPRPPARVETLREEVLTDLRVFELNSDSGKSTPSNNGKKGSSTDISEDWEKDFDLDMTEEEVQMALSKVDASGEVSGPDWPQGGKPNDPRSQDSPHQAQVSPQDGSLLLARWQAFGKGAQASHSGPEQL", "length": 475, "header": "tr|A0A287APT9-1|A0A287APT9_PIG Computationally mapped isoform of BSD domain containing 1 OS=Sus scrofa OX=9823 GN=BSDC1 PE=1 SV=1 CANONICAL=A0A287AJV7-1" }, "locus": { "chromosome": "6", "start_pos": 88838817, "end_pos": 88815510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061096.1", "url": "https://www.ensembl.org/id/ENSSSCT00000061096.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046082.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046082.1" } ] } }, { "isoform_ac": "A0A5G2QE92-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJV7/entry#A0A5G2QE92-1", "sequence": { "sequence": "ERGGDWAEGGVGLRIGPRSPGRCLRGRCRVGSQREDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKEKLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISEEPDWEEEEEELVGSSPTSPKEVKVPVARTSTSLEGGPGPQSPCEENLVTPTEPPTEVTPSESSESISLVTQIAKPAPASEAAVMPKDLSQKLLEASLEEQGLAVDVGETGPPPLAQSKPNTPAGRPSGPEPRPPARVETLREEVLTDLRVFELNSDSGKSTPSNNGKKGSSTDISEDWEKDFDLDMTEEEVQMALSKVDASGEVSGPWETWEHWSMFLKPPQKPIQL", "length": 474, "header": "tr|A0A5G2QE92-1|A0A287AJV7_PIG Computationally mapped isoform of BSD domain containing 1 OS=Sus scrofa OX=9823 GN=BSDC1 PE=1 SV=1 CANONICAL=A0A287AJV7-1" }, "locus": { "chromosome": "6", "start_pos": 88838951, "end_pos": 88815162, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074286.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074286.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061977.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061977.1" } ] } }, { "isoform_ac": "A0A8D1YYY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJV7/entry#A0A8D1YYY9-1", "sequence": { "sequence": "MAEGEDVGWWRSWLQQSYQAVKEKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISEEPDWEEEEEELVGSSPTSPKEVKVPVARTSTSLEGGPGPQSPCEENLVTPTEPPTEVTPSESSESISLVTQIAKPAPASEAAVMPKDLSQKLLEASLEEQGLAVDVGETGPPPLAQSKPNTPAGRPSGPEPRPPARVETLREEVLTDLRVFELNSDSGKSTPSNNGKKGSSTDISEDWEKDFDLDMTEEEVQMALSKVDASGELEDVEWEDWE", "length": 335, "header": "tr|A0A8D1YYY9-1|A0A287AJV7_PIG Computationally mapped isoform of BSD domain containing 1 OS=Sus scrofa OX=9823 GN=BSDC1 PE=1 SV=1 CANONICAL=A0A287AJV7-1" }, "locus": { "chromosome": "6", "start_pos": 88838817, "end_pos": 88813665, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042296.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042296.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047162.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047162.2" } ] } }, { "isoform_ac": "A0A8W4FDU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJV7/entry#A0A8W4FDU6-1", "sequence": { "sequence": "VFHREDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKEKLAARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISEEPDWEEEEEELVGSSPTSPKEVKVPVARTSTSLEGGPGPQSPCEENLVTPTEPPTEVTPSESSESISLVTQIAKPAPASEAAVMPKDLSQKLLEASLEEQGLAVDVGETGPPPLAQSKPNTPAGRPSGPEPRPPARVETLREEVLTDLRVFELNSDSGKSTPSNNGKKGSSTDISEDWEKDFDLDMTEEEVQMALSKVDASGELEDVEWEDWE", "length": 374, "header": "tr|A0A8W4FDU6-1|A0A287AJV7_PIG Computationally mapped isoform of BSD domain containing 1 OS=Sus scrofa OX=9823 GN=BSDC1 PE=1 SV=1 CANONICAL=A0A287AJV7-1" }, "locus": { "chromosome": "6", "start_pos": 88838555, "end_pos": 88813665, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104188.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104188.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076480.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076480.1" } ] } }, { "isoform_ac": "A0A8W4FIH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJV7/entry#A0A8W4FIH9-1", "sequence": { "sequence": "MAKRLRKKKKSVLMDTSWARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISEEPDWEEEEEELVGSSPTSPKEVKVPVARTSTSLEGGPGPQSPCEENLVTPTEPPTEVTPSESSESISLVTQIAKPAPASEAAVMPKDLSQKLLEASLEEQGLAVDVGETGPPPLAQSKPNTPAGRPSGPEPRPPARVETLREEVLTDLRVFELNSDSGKSTPSNNGKKGSSTDISEDWEKDFDLDMTEEEVQMALSKVDASGEVSGPWETWEHWSMFLKPPQKPIQL", "length": 343, "header": "tr|A0A8W4FIH9-1|A0A287AJV7_PIG Computationally mapped isoform of BSD domain containing 1 OS=Sus scrofa OX=9823 GN=BSDC1 PE=1 SV=1 CANONICAL=A0A287AJV7-1" }, "locus": { "chromosome": "6", "start_pos": 88828236, "end_pos": 88815162, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093611.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093611.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079029.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079029.1" } ] } }, { "isoform_ac": "I3L7U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJV7/entry#I3L7U1-1", "sequence": { "sequence": "ERGGDWAEGGVGLRIGPRSPGRCLRGRCRVGSQREDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKEKLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISEEPDWEEEEEELVGSSPTSPKEVKVPVARTSTSLEGGPGPQSPCEENLVTPTEPPTEVTPSESSESISLVTQIAKPAPASEAAVMPKDLSQKLLEASLEEQGLAVDVGETGPPPLAQSKPNTPAGRPSGPEPRPPARVETLREEVLTDLRVFELNSDSGKSTPSNNGKKGSSTDISEDWEKDFDLDMTEEEVQMALSKVDASGELEDVEWEDWE", "length": 460, "header": "tr|I3L7U1-1|A0A287AJV7_PIG Computationally mapped isoform of BSD domain containing 1 OS=Sus scrofa OX=9823 GN=BSDC1 PE=1 SV=2 CANONICAL=A0A287AJV7-1" }, "locus": { "chromosome": "6", "start_pos": 88838951, "end_pos": 88813665, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027595.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027595.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020098.2", "url": "https://www.ensembl.org/id/ENSSSCP00000020098.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 275, "start_aa": "Thr", "end_pos": 275, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr275", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE92" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJV7" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AJV7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 475, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AJV7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AJV7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AJV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJV7" }, { "id": "PS50858", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50858" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BSD", "eco_id": "ECO_0000259", "start_pos": 146, "end_pos": 198, "start_aa": "Trp", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 275 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 214, "end_pos": 216 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW4", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z2K6-1", "protein_name": "Kelch repeat and BTB domain containing 13", "gene_name": "KBTBD13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSPEDEGARVGPSGRVRIRVEEQCFLVEKALLVESSEYFRALFRSGMRESTQEEIGLGGLSAAGFLAMLRVLAGERPALGGEETFQAVECAAFLQVKPLAKYLIHSIDSDNCLLLYHAAAVFGLLDLFHCAALYIRDSYAELEEHLGCLPADLLAYVQALLPSTFVAVGAHTPTFEFLEDLSRTICYLDEESNAWRTLSCLPLSASTFLAGMATMDNKIYIVGGVYGASKQVVESSFCYDADTDTWSEFPSPHQLRYDVRLVGHEGCLYAIGGEYEKISLKSVERYDVASNTWTFISDLPQPSSAAPCAQAMGQIFVCLWKPLDTTVIYEYESRQDAWLPVTELKRHQSYGHCMVAHRDNLYVMRNGPGDDFLRCVIDCFNLRSRQWTALPGQFMNSKGALFTATIKGDTVYTVNKMLTQLYSVEEEAWRVKKERAGFPRSGSLQTFLLRLPRRNHDIAT", "length": 460 }, "evidence": [ { "id": "A0A287AJW4", "url": "https://omabrowser.org/oma/group/A0A287AJW4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "C9JR72-1", "protein_name": "Kelch repeat and BTB domain-containing protein 13", "gene_name": "KBTBD13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARGPQTLVQVWVGGQLFQADRALLVEHCGFFRGLFRSGMRETRAAEVRLGVLSAGGFRATLQVLRGDRPALAAEDELLQAVECAAFLQAPALARFLEHNLTSDNCALLCDAAAAFGLRDVFHSAALFICDGERELAAELALPEARAYVAALRPSSYAAVSTHTPAPGFLEDASRTLCYLDEEEDAWRTLAALPLEASTLLAGVATLGNKLYIVGGVRGASKEVVELGFCYDPDGGTWHEFPSPHQPRYDTALAGFDGRLYAIGGEFQRTPISSVERYDPAAGCWSFVADLPQPAAGVPCAQACGRLFVCLWRPADTTAVVEYAVRTDAWLPVAELRRPQSYGHCMVAHRDSLYVVRNGPSDDFLHCAIDCLNLATGQWTALPGQFVNSKGALFTAVVRGDTVYTVNRMFTLLYAIEGGTWRLLREKAGFPRPGSLQTFLLRLPPGAPGPVTSTTAEL", "length": 458 }, "evidence": [ { "id": "A0A287AJW4", "url": "https://omabrowser.org/oma/group/A0A287AJW4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F1MXY6-1", "protein_name": "Kelch repeat and BTB domain containing 13", "gene_name": "KBTBD13", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPQGPETLVQVWVGSQLFQADRALLVEHCGFFRGLFRSGMREARAAEVHLGALSPDGFHTTLRVLRGERPALAAADELLQAVECAAFLQAPALARFLEHSLTSENCALLCDAAAAFGLHDVFHSAALFIRDGARELAAELALPEARTYVAELRPSSYVAVSTHAPAPGFLEDPSRTMCYLDEEEDTWRTLAALPLEASTLLAGVATLGNKLYIVGGVRGPNKEVVDLGFCYDPDGGTWREFPSPHQPRYDTALAGFEGHLYAIGGEFQRTAMSSVERYDPASGCWSFMADLPQPAAGVPCAHARGRLFVCLWQPADTTAVVEYAVRADEWLPVAELRRPQSYGHCMVAHRDSLYVVRNGPKDDFLHCAIDCLNLATGQWTALPGQFVNSKGALFTAVVRGDTVYTVNRVFTLLYAIEGGSWRLLREKAGFPRPGSLQTFLLRLPPGAQGPVASTTPEL", "length": 458 }, "evidence": [ { "id": "A0A287AJW4", "url": "https://omabrowser.org/oma/group/A0A287AJW4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8C828-1", "protein_name": "Kelch repeat and BTB domain-containing protein 13", "gene_name": "Kbtbd13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPPGPEVPVQVWVDGQLFQAEQSLLVEHCGFFRGLFRSGMREARAAEVRLGALSASGFRTALRVLRGERPALAAEDELLQAVECAAFLQAPALARFLEHSVTSDNCSLLCDAAAAFGLRDVLHSAALFIRDGSHELVAQLELPEARAYVAALRPSTYVAVSTHTPTPGFLEDASRTMCFLDEEEDAWRTLAALPLEASTLLAGVATLGNKLYIVGGVCGASKEVVELGFCYDPEGGTWCEFPSPHQPRYDMALAGFEGRLYAIGGEFQRTPMSSVECYDPATGCWSFVADLPQPATGVPCAQARGRLFVCLWRPADITAVVEYVVQMDKWLPVAELCRSQSYGHFMVAHRDSLYVVRNGPSDDFLHCAIDCLNLVTGQWTSLPGQFVNSKGALFTSVVRGDTVYTVNRVSTLVYAIEDGTWRLLREKAGFPRPGSLQTFLLRLPPGTTGPVATALPEL", "length": 458 }, "evidence": [ { "id": "A0A287AJW4", "url": "https://omabrowser.org/oma/group/A0A287AJW4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WCK8-1", "protein_name": "Kelch repeat and BTB domain-containing protein 13", "gene_name": "kbtbd13b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDIVKVRVGDNVFETNKSLLIKECEYFRALYRSGMIECHQEEIHLKNLKAKGFVIMLSVATGDRPILNDDEILEAIECAAFFQTEPLARHLQDLLNSDNCLLMYQASAIYGLWGLQEMSAQFIRNMYHDLQEDLKDLPQELTEFVDSLVPSAFVAVGSHSTCTADELPLAATRTVCYLDEDEGDWKVLTALPMEASTSLSGLTVLDNQLYVVGGVHGVDKRAVDASFCYDVVTNTWSLLPGPRQSRYNFTLTGIEGSLYAMGGESGGTTMSSVEIYNVATKEWTFAAPLPRPVAGIACTNAMSRIFVCLWKPMDTNEIYEYIPKQDAWVLVSTLLKHQSYGHCMVAHRDNLYVIRNGPKDDFLRCLMDCYNITTGQWTSMPGHYGNSKGALFTSVVRGDSVFTLNRTLTLEYTIAGNMWKPSKQMKGFPRNGSVWTFLLRIPKERKEVIVS", "length": 451 }, "evidence": [ { "id": "A0A287AJW4", "url": "https://omabrowser.org/oma/group/A0A287AJW4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW4", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of the force of skeletal muscle contraction", "id": "GO:0014728", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014728", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW4", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW4" } ], "pmid": "" }, { "name": "relaxation of skeletal muscle", "id": "GO:0090076", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090076", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJW4", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AJW4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 455, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AJW4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AJW4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AJW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AJW4" }, { "id": "PF00651", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 99, "start_aa": "Gln", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 163 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AK28-1", "uniprot_ac": "A0A287AK28", "uniprot_id": "A0A287AK28_PIG", "mass": { "chemical_mass": 56407.0, "monoisotopic_mass": 56407.0 }, "refseq": { "ac": "XP_020947595", "name": "protein phosphatase 1H isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947595" }, "gene_names": [ { "name": "PPM1H", "type": "recommended", "evidence": [ { "id": "A0A287AK28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28" } ] }, { "name": "PPM1H", "type": "synonym", "evidence": [ { "id": "XP_020947595", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947595" } ] } ], "protein_names": [ { "name": "Protein phosphatase, Mg2+/Mn2+ dependent 1H", "type": "synonym", "evidence": [ { "id": "A0A287AK28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28/entry#names_and_taxonomy" } ] }, { "name": "protein phosphatase 1H isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020947595", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947595" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AK28", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPM1H", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28", "locus": { "chromosome": "5", "start_pos": 27299778, "end_pos": 27572618, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036751", "url": "https://www.ensembl.org/id/ENSSSCG00000036751" } ] } } ], "crossref": [ { "id": "ENSSSCG00000036751", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036751", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00143", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00143", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102158157", "url": "https://www.ncbi.nlm.nih.gov/gene/102158157", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001932", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001932", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015655", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015655", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102158157", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102158157", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VMAGGSN", "url": "https://omabrowser.org/oma/group/VMAGGSN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AK28", "url": "https://www.orthodb.org/?gene=A0A287AK28", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13832", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13832", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13832:SF287", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13832:SF287", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00481", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00481", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020947595", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947595", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AK28", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AK28-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L778", "url": "https://www.uniprot.org/uniprotkb/I3L778", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L778-1", "url": "https://www.uniprot.org/uniprotkb/I3L778-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLTRVKSAVANFMGGIMAGSSGSEHSGGGCGGSDLPLRFPYGRPEFLGLSQDEVECSADHIARPILILKETRRLPWATGYAEVINAGKSTHNEDQASCEVLTVKKKAGAITSTPNRNSAKRRSSLPNGEGLQLKENSESEGISCHYWSLFDGHAGSGAAVVASRLLQHHVTEQLQDIVEILKNSAVLPPTCLGEEPDHTPANSRTLTRAASLRGGVGAPGSPGTPPTRFFTEKKIPHECLVIGALESAFKEMDLQIERERSLYNISGGCTALIVVCLLGKLYVANAGDSRAIIVRNGEIIPMSSEFTPETERQRLQYLAFMQPHLLGNEFTHLEFPRRVQRKELGKKMLYRDFNMTGWAYKTIEDDDLKFPLIYGEGKKARVMATIGVTRGLGDHDLKVHDSNIYIKPFLSSAPEVRVYDLSKYEHGADDVLILATDGLWDVLSNEEVAEAITQFLPNCDPDDPHRYTLAAQDLVMRARGVLKDRGWRISNDRLGSGDDISVYVIPLIHGNKLS", "length": 514, "header": "tr|A0A287AK28-1|A0A287AK28_PIG Isoform 1 of Protein phosphatase, Mg2+/Mn2+ dependent 1H OS=Sus scrofa OX=9823 GN=PPM1H PE=1 SV=1 CANONICAL=A0A287AK28-1" }, "isoforms": [ { "isoform_ac": "A0A287AK28-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28/entry#A0A287AK28-1", "sequence": { "sequence": "MLTRVKSAVANFMGGIMAGSSGSEHSGGGCGGSDLPLRFPYGRPEFLGLSQDEVECSADHIARPILILKETRRLPWATGYAEVINAGKSTHNEDQASCEVLTVKKKAGAITSTPNRNSAKRRSSLPNGEGLQLKENSESEGISCHYWSLFDGHAGSGAAVVASRLLQHHVTEQLQDIVEILKNSAVLPPTCLGEEPDHTPANSRTLTRAASLRGGVGAPGSPGTPPTRFFTEKKIPHECLVIGALESAFKEMDLQIERERSLYNISGGCTALIVVCLLGKLYVANAGDSRAIIVRNGEIIPMSSEFTPETERQRLQYLAFMQPHLLGNEFTHLEFPRRVQRKELGKKMLYRDFNMTGWAYKTIEDDDLKFPLIYGEGKKARVMATIGVTRGLGDHDLKVHDSNIYIKPFLSSAPEVRVYDLSKYEHGADDVLILATDGLWDVLSNEEVAEAITQFLPNCDPDDPHRYTLAAQDLVMRARGVLKDRGWRISNDRLGSGDDISVYVIPLIHGNKLS", "length": 514, "header": "tr|A0A287AK28-1|A0A287AK28_PIG Isoform 1 of Protein phosphatase, Mg2+/Mn2+ dependent 1H OS=Sus scrofa OX=9823 GN=PPM1H PE=1 SV=1 CANONICAL=A0A287AK28-1" }, "locus": { "chromosome": "5", "start_pos": 27572190, "end_pos": 27304266, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045147.2", "url": "https://www.ensembl.org/id/ENSSSCT00000045147.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044254.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044254.1" } ] } }, { "isoform_ac": "I3L778-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28/entry#I3L778-1", "sequence": { "sequence": "MLTRVKSAVANFMGGIMAGSSGSEHSGGGCGGSDLPLRFPYGRPEFLGLSQDEVECSADHIARPILILKETRRLPWATGYAEVINAGKSTHNEDQASCEVLTVKKKAGAITSTPNRNSAKRRSSLPNGEGLQLKENSESEGISCHYWSLFDGHAGSGAAVVASRLLQHHVTEQLQDIVEILKNSAVLPPTCLGEEPDHTPANSRTLTRAASLRGGVGAPGSPGTPPTRFFTEKKIPHECLVIGALESAFKEMDLQIERERSLYNISGGCTALIVVCLLGKLYVANAGDSRAIIVRNGEIIPMSSEFTPETERQRLQYLAFMQPHLLGNEFTHLEFPRRVQRKELGKKMLYRDFNMTGWAYKTIEDDDLKFPLIYGEGKKVRVYDLSKYEHGADDVLILATDGLWDVLSNEEVAEAITQFLPNCDPDDPHRYTLAAQDLVMRARGVLKDRGWRISNDRLGSGDDISVYVIPLIHGNKLS", "length": 478, "header": "tr|I3L778-1|A0A287AK28_PIG Computationally mapped isoform of Protein phosphatase, Mg2+/Mn2+ dependent 1H OS=Sus scrofa OX=9823 GN=PPM1H PE=1 SV=2 CANONICAL=A0A287AK28-1" }, "locus": { "chromosome": "5", "start_pos": 27572190, "end_pos": 27304266, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029741.3", "url": "https://www.ensembl.org/id/ENSSSCT00000029741.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019882.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019882.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 224, "start_aa": "Thr", "end_pos": 224, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr224", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L778", "url": "https://www.uniprot.org/uniprotkb/I3L778" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102158157", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102158157", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q3UYC0-1", "protein_name": "Protein phosphatase 1H", "gene_name": "Ppm1h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLTRVKSAVANFMGGIMAGSSGSEHGGSGCGGSDLPLRFPYGRPEFLGLSQDEVECSADHIARPILILKETRRLPWATGYAEVINAGKSTHNEDQASCEVLTVKKKAGTITSTPNRNSKRRSSLPNGEGLQLKENSESEGISCHYWSLFDGHAGSGAAVVASRLLQHHITQQLQDIVEILKNSAILPPTCLGEEPESTPAHGRTLTRAASLRGGVGAPGSPSTPPTRFFTEKKIPHECLVIGALESAFKEMDLQIERERSAYNISGGCTALIVVCLLGKLYVANAGDSRAIIIRNGEIIPMSSEFTPETERQRLQYLAFMQPHLLGNEFTHLEFPRRVQRKELGKKMLYRDFNMTGWAYKTIEDDDLKFPLIYGEGKKARVMATIGVTRGLGDHDLKVHDSNIYIKPFLSSAPEVRVYDLSRYEHGADDVLILATDGLWDVLSNEEVAEAITQFLPNCDPDDPHRYTLAAQDLVMRARGVLKDRGWRISNDRLGSGDDISVYVIPLIHGNKLS", "length": 513 }, "evidence": [ { "id": "A0A287AK28", "url": "https://omabrowser.org/oma/group/A0A287AK28/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5M821-1", "protein_name": "Protein phosphatase 1H", "gene_name": "Ppm1h", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLTRVKSAVANFMGGIMAGSSGSEHGGSGCGGSDLPLRFPYGRPEFLGLSQDEVECSADHIARPILILKETRRLPWATGYAEVINAGKSTHNEDQASCEVLTVKKKVGTITSTPNRNSKRRSSLPNGEGLQLKENSESEGISCHYWSLFDGHAGSGAAVVASRLLQHHITQQLQDIVEILKNSAILPPTCLGEEPESTPAHGRTLTRAASLRGGVGAPGSPSTPPTRFFTEKKIPHECLVIGALESAFKEMDLQIERERSAYNISGGCTALIVVCLLGKLYVANAGDSRAIIIRNGEIIPMSSEFTPETERQRLQYLAFMQPHLLGNEFTHLEFPRRVQRKELGKKMLYRDFNMTGWAYKTIEDDDLKFPLIYGEGKKARVMATIGVTRGLGDHDLKVHDSNIYIKPFLSSAPEVRVYDLSKYEHGADDVLILATDGLWDVLSNEEVAEAITQFLPNCDPDDPHRYTLAAQDLVMRARGVLKDRGWRISNDRLGSGDDISVYVIPLIHGNKLS", "length": 513 }, "evidence": [ { "id": "A0A287AK28", "url": "https://omabrowser.org/oma/group/A0A287AK28/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ULR3-1", "protein_name": "Protein phosphatase 1H", "gene_name": "PPM1H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLTRVKSAVANFMGGIMAGSSGSEHGGGSCGGSDLPLRFPYGRPEFLGLSQDEVECSADHIARPILILKETRRLPWATGYAEVINAGKSTHNEDQASCEVLTVKKKAGAVTSTPNRNSSKRRSSLPNGEGLQLKENSESEGVSCHYWSLFDGHAGSGAAVVASRLLQHHITEQLQDIVDILKNSAVLPPTCLGEEPENTPANSRTLTRAASLRGGVGAPGSPSTPPTRFFTEKKIPHECLVIGALESAFKEMDLQIERERSSYNISGGCTALIVICLLGKLYVANAGDSRAIIIRNGEIIPMSSEFTPETERQRLQYLAFMQPHLLGNEFTHLEFPRRVQRKELGKKMLYRDFNMTGWAYKTIEDEDLKFPLIYGEGKKARVMATIGVTRGLGDHDLKVHDSNIYIKPFLSSAPEVRIYDLSKYDHGSDDVLILATDGLWDVLSNEEVAEAITQFLPNCDPDDPHRYTLAAQDLVMRARGVLKDRGWRISNDRLGSGDDISVYVIPLIHGNKLS", "length": 514 }, "evidence": [ { "id": "A0A287AK28", "url": "https://omabrowser.org/oma/group/A0A287AK28/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VR62-1", "protein_name": "PPM-type phosphatase domain-containing protein", "gene_name": "PP2C", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFSNFKERIISAIAPDLPPLPGNSERAIGSGSGHHHSSTHQRLRFGASGGQPMPDKFPYARPPFLQLLTPDELRASADHNVRPIIVPRDINLLPWGTGYAECVNSGKSEWNEDQGAFCRQVLSDPEHKHPDLPYTYFGIFDGHAGYGAALAASHQFHHILHEKLVDCLELLLPRDADATNGGGEGNKLNPTFPHPIYFQRRVTKDELIIGALESAFFNMDSLIAQDCDRYRDAGGCTACVSLFIDGKMYVANAGDSRAVLCQRRATPERPQTNTDSGIEPDPLEASCYPVPFSADHTPETERERLLNVARLKPHLMGKHYVAMEYAKRPHIKDMGQRILCRQGTMRGWTYKTLTMEDLCMPVVNGEGKRSRLLGTLGVTRGFGDHELLAINTGIQIKPFLTPHPDVRQRDLTQVVSIPDEDNRDGDYGVLVMATDGLWDVSENDAVSRTVFQTLSKYSTEKHRYTMVAQELVARARGKINDSGHWRLADSKAAATVDDISVIVIPVCQYYKEHVEWTQNYKRDLEHRRRQAQAHMAQEAVNVLNGVIAEEAHVVEEEEEGEVVVHEARTSHNQTKVPRRLDGTLDETLVVELTPSLEQVHIQNADSAEGESSKENVNDKDKEASTTRQQSQQQQQQQQQQQQKGRKGKGKH", "length": 651 }, "evidence": [ { "id": "A0A287AK28", "url": "https://omabrowser.org/oma/group/A0A287AK28/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A287AK28", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AK28", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A287AK28", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "[pyruvate dehydrogenase (acetyl-transferring)]-phosphatase activity", "id": "GO:0004741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004741", "evidence": [ { "database": "UniProtKB", "id": "A0A287AK28", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A287AK28", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28" } ], "pmid": "" }, { "name": "protein serine/threonine phosphatase activity", "id": "GO:0004722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004722", "evidence": [ { "database": "UniProtKB", "id": "A0A287AK28", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AK28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AK28" }, { "id": "PS51746", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51746" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PPM-type phosphatase", "eco_id": "ECO_0000259", "start_pos": 77, "end_pos": 507, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 224 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 264, "end_pos": 266 }, { "start_pos": 354, "end_pos": 356 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AK36-1", "uniprot_ac": "A0A287AK36", "uniprot_id": "A0A287AK36_PIG", "mass": { "chemical_mass": 12657.0, "monoisotopic_mass": 12657.0 }, "refseq": {}, "gene_names": [ { "name": "SMIM20", "type": "recommended", "evidence": [ { "id": "A0A287AK36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AK36" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 20", "type": "synonym", "evidence": [ { "id": "A0A287AK36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AK36/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AK36", "url": "https://www.uniprot.org/uniprotkb/A0A287AK36" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMIM20", "url": "https://www.uniprot.org/uniprotkb/A0A287AK36", "locus": {} } ], "crossref": [ { "id": "A0A287AK36", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AK36", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040571", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040571", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100622616", "url": "https://www.ncbi.nlm.nih.gov/gene/100622616", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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CANONICAL=A0A287AKA5-1" }, "locus": { "chromosome": "13", "start_pos": 179189608, "end_pos": 179180477, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066343.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066343.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044335.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044335.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKA5", "url": "https://www.uniprot.org/uniprotkb/A0A287AKA5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XTR2-1", "protein_name": "RNA binding motif protein 11", "gene_name": "RBM11", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "EGRKEGRKEGRKEGKKERKKERKKERKKERKKERKKERKKERKKERKKEKRNPTFKNTYLNAILLYVCTCLKADCSNQAGPLTKVTICKDKEGKPKSFGFVCFKHKESVPYAIALLNGIRLYGRPIKVRYRFGSSHSSELNSPTHGFENYVDLYSPSYRYQEPCGNAPFPVTPFPMNNCLPQEHFIFQKMMNHFLEQQFTVHSPVGQQFPYYQMALPLPSSLSIPPYQNQAANFKSGQSSFELAVPHSSDGKVYQVDESTSKRKREQQSCDSDTSTEDDRMRQRDHDQKYNKCKAKKKRH", "length": 300 }, "evidence": [ { "id": "A0A287AKA5", "url": "https://omabrowser.org/oma/group/A0A287AKA5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P57052-1", "protein_name": "Splicing regulator RBM11", "gene_name": "RBM11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNEEMLVGRSSFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVLQLPYYEMTAPLPNSASVSSSLNHVPDLEAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKWTHQQPSDSDLYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY", "length": 281 }, "evidence": [ { "id": "A0A287AKA5", "url": "https://omabrowser.org/oma/group/A0A287AKA5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80YT9-1", "protein_name": "Splicing regulator RBM11", "gene_name": "Rbm11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"id": "PF15842", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15842", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AKD1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKD1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W536", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W536", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W536-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W536-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAP0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAP0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASPNGFFNHLTYFLAAGAVTLGIGFFALASALWFLICKRREIFQDTKLKATDERCKQRPSKAKIKSHSQCVFISRNFHTGSVQLQEEQRRKETARIKAIKDHSKDEFCLATKKVICDPSETSSATNPSSVTLSLSTLPSDSYYSQSIEVADDWFSDDPLAKKSPPVPFLGEPLMEKVFSYLSTIPLEECTGNVLNDTL", "length": 199, "header": "tr|A0A287AKD1-1|A0A287AKD1_PIG Isoform 1 of Chromosome 1 open reading frame 185 OS=Sus scrofa OX=9823 GN=C1orf185 PE=4 SV=2 CANONICAL=A0A287AKD1-1" }, "isoforms": [ { "isoform_ac": "A0A287AKD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKD1/entry#A0A287AKD1-1", "sequence": { "sequence": "MASPNGFFNHLTYFLAAGAVTLGIGFFALASALWFLICKRREIFQDTKLKATDERCKQRPSKAKIKSHSQCVFISRNFHTGSVQLQEEQRRKETARIKAIKDHSKDEFCLATKKVICDPSETSSATNPSSVTLSLSTLPSDSYYSQSIEVADDWFSDDPLAKKSPPVPFLGEPLMEKVFSYLSTIPLEECTGNVLNDTL", "length": 199, "header": "tr|A0A287AKD1-1|A0A287AKD1_PIG Isoform 1 of Chromosome 1 open reading frame 185 OS=Sus scrofa OX=9823 GN=C1orf185 PE=4 SV=2 CANONICAL=A0A287AKD1-1" }, "locus": { "chromosome": "6", "start_pos": 161031138, "end_pos": 160986084, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037974.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037974.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044474.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044474.2" } ] } }, { "isoform_ac": "A0A4X1W536-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKD1/entry#A0A4X1W536-1", "sequence": { "sequence": "MASPNGFFNHLTYFLAAGAVTLGIGFFALASALWFLICKRREIFQDTKLKATDERCKQRPSKAKIKSHSQCVFISRNFHTGSVQLQQLKITLKMNSALQQKRSFVIPQRLARQQIPAVLP", "length": 120, "header": "tr|A0A4X1W536-1|A0A287AKD1_PIG Computationally mapped isoform of Chromosome 1 open reading frame 185 OS=Sus scrofa OX=9823 GN=C1orf185 PE=4 SV=1 CANONICAL=A0A287AKD1-1" }, "locus": { "chromosome": "6", "start_pos": 161031138, "end_pos": 160986286, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071527.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071527.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072476.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072476.1" } ] } }, { "isoform_ac": "A0A8W4FAP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKD1/entry#A0A8W4FAP0-1", "sequence": { "sequence": "KAKIKSHSQCVFISRNFHTGSVQLQEEQRRKETARIKAIKDHSKDEFCLATKKVICDPSETSSATNPSSVTLSLSTLPSDSYYSQSIEVADDWFSDDPLAKKSPPVPFLGEPLMEKVFSYLSTIPLEECTGNVLNDTL", "length": 138, "header": "tr|A0A8W4FAP0-1|A0A287AKD1_PIG Computationally mapped isoform of Chromosome 1 open reading frame 185 OS=Sus scrofa OX=9823 GN=C1orf185 PE=4 SV=1 CANONICAL=A0A287AKD1-1" }, "locus": { "chromosome": "6", "start_pos": 161012967, "end_pos": 160986084, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091915.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091915.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076466.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076466.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W536", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W536" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AKD1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 199, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AKD1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AKD1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 196, "end_pos": 198 } ] }, "class_list": [], "section_stats": [ { "table_id": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AKD4-1", "uniprot_ac": "A0A287AKD4", "uniprot_id": "A0A287AKD4_PIG", "mass": { "chemical_mass": 92002.0, "monoisotopic_mass": 92002.0 }, "refseq": {}, "gene_names": [ { "name": "BEGAIN", "type": "recommended", "evidence": [ { "id": "A0A287AKD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKD4" } ] } ], "protein_names": [ { "name": "Brain enriched guanylate kinase associated", "type": "synonym", "evidence": [ { "id": "A0A287AKD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKD4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AKD4", "url": "https://www.uniprot.org/uniprotkb/A0A287AKD4" } ], "common_name": "Pig", "glygen_name": 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GN=BEGAIN PE=4 SV=2 CANONICAL=A0A287AKD4-1" }, "locus": { "chromosome": "7", "start_pos": 121426806, "end_pos": 121390301, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056539.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056539.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044356.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044356.2" } ] } }, { "isoform_ac": "A0A287BMN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKD4/entry#A0A287BMN7-1", "sequence": { "sequence": "MWTGGRRPGRLRRAASAADMEKLRLRSPWVPSCLGQPRVLQGRLARSSPSLWDSALQEQKGELRKRLSYTTHKLEKLETEFDSTRHYLEVELRRAQEELEKVTEKLRRIQSNYMALQRINQELEDKLYRMGQHYEEEKRALSHEIVALNSHLLEAKVTIDKLSEDNELYRKDCDLAAQLLQCSQTYGRVHKVSELPSEFQERMSLSMDKPSCSLPSPLCRPAYADSVPACVMAKVLEKPDQASLSSRLSDASASDLGFRDGLEKPGSRPPYKGDLYCSDTALYCPEERRHDRRPSVDGPVADVGFLQAQNSTDSTADEEEEAEAAAYPASYRHEAFPGYAASLPTSSSYSSFSATSEEKEHAQASTLTASQQAIYLNSRDELFGRKPPAAYESSPRYAAAAAAAAAAVAAPLEAAVAPGYPRTVSPYPAEPYRFPAPSVSPGPQQALMPPNLWNLRAKPGSARLVGEDARGQWRPLSVEDIGAYPFQAAAAAAAAAAAAAAAAGAAGAAGRASPCNFNDRYFGGGAGGSGDKAEGRASPLYASYKADSFSEGDDLAQGHLAEPRFLRVAGELSLSPGRAADPLPSYAASEGDRERLGVQLCGASGSPEPEHSPRSSRDSLEPSSMEASPEMHPSARLSPQPAFPRAGGSGLSRKDSLTKAQLYGTLLN", "length": 668, "header": "tr|A0A287BMN7-1|A0A287BMN7_PIG Computationally mapped isoform of Brain enriched guanylate kinase associated OS=Sus scrofa OX=9823 GN=BEGAIN PE=4 SV=2 CANONICAL=A0A287AKD4-1" }, "locus": { "chromosome": "7", "start_pos": 121434403, "end_pos": 121390301, "strand": "+", "evidence": [ { "database": 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PE=1 SV=1 CANONICAL=A0A287AKE4-1" }, "isoforms": [ { "isoform_ac": "A0A287AKE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKE4/entry#A0A287AKE4-1", "sequence": { "sequence": "MAYIPGGGAPASGAAPVGSQYCVCKVELSVSGQNLLDRDVTSKSDPFCVLFTENDCRWIEYDRTETAVNNLNPAFSKKFVLDYRFEEVQRLKFALFDQDKSSTKLEEHDFLGQFSCSLGTIVSSKKITRPLLLINDKPAGKGLITIAAQELSDNRVITLSLAGRKLDKKDLFGKSDPFLEFYKPGDDGKWMLVHRTEVIKYTLDPVWKPFTVPLVSLCDGDMEKPIQVMCYDYDNDGGHDFIGEFQTSVSQMCEARDGVPREFECINPKKQRKKKNYKNSGIIILRSCKINRDYSFLDYILGGCQLMFTVGIDFTASNGNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIINHVARFAAQATQQKTATQYFILLIITDGVISDMEETRHAVVQASRLPMSIIIVGVGNADFAAMEFLDGDSRTLRSHTGEEAARDIVQFVPFREFRNAAKETLAKAVLAELPQQVVQYFKHKNLPPANSEPA", "length": 548, "header": "tr|A0A287AKE4-1|A0A287AKE4_PIG Isoform 1 of Copine-2 OS=Sus scrofa OX=9823 GN=CPNE2 PE=1 SV=1 CANONICAL=A0A287AKE4-1" }, "locus": { "chromosome": "6", "start_pos": 19095630, "end_pos": 19064458, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049340.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049340.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051356.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051356.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKE4", "url": "https://www.uniprot.org/uniprotkb/A0A287AKE4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627365", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627365", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A2R8Q0R6-1", "protein_name": "Copine-2", "gene_name": "cpne2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAYTLGSGPDVGPALGPQHCVTKVELSVCGANLLDRDVASKSDPFCVLFHDVDGNWVELARTETAINNLNPVFGVKFQVDYHFEEVQKLKFAMFDEDKCSSQLYEHDFLGEFTCTLGVIVSNKKLHRPLILANGKPAGKGAITITAQELSDNRIITLTMCGRKLDKKDFFGKSDPYLEFHKQGDDGKWMMVHRTEVIKNTLDPVWKPFTVPLISLCNGDVDRNIKVLCYDYDNDGGHDFIGEFQTSVTKMSEAENGVEVEFECINPKKQKKKSYKNSGIIILKSCKITRDYSFLDYILGGCQLMFTVGIDFTASNGSPREPSSLHYINPMGSNEYLSAIWAVGQIIQDYDTDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVEGIVQAYSNCLPHIRFYGPTNFSPIINHVARFANQALQQDTAAQYFTLLIITDGVISDMDETRHAIVQAAKLPMSIIIIGVGNADFTAMEFLDGDSSALRSYTGEEAVRDIVQFVPFRDFRNAPKETLAKSVLAELPQQVTQYFKQRNLSPSNTMPE", "length": 545 }, "evidence": [ { "id": "A0A287AKE4", "url": "https://omabrowser.org/oma/group/A0A287AKE4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1M1L9-1", "protein_name": "Copine-2", "gene_name": "Cpne2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAYIPDGGPPTAGGIPLGSQCCVCKVELSVSGQNLLDRDVTSKSDPFCVLFIEDNGRWMEFDRTETAINNLNPAFSKKFVLDYHFEEVQKLKFALFDQDKSSAQLDEHDFLGQFSCSLGTIVSSKKITRPLLLMNDKPAGKGLITIAAQELSDNRVITLSLAGRKLDKKDLFGKSDPFLEFYKPGDDGKWMLVHRTEVIKYTLDPVWKPFTVPLVSLCDGDLEKPIQVMCYDYDNNGGHDFIGEFQTSVLQMSEARDGVPLEMECINPKKQRKKKSYKNSGIIILRSCKIHRNYSFLDYILGGCQLMFTVGIDFTASNGNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATEQQTATQYFILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGDNRRLRSHTGEEAARDIVQFVPFREFRNAAKETLAKAVLAELPQQVVQYFKHKNLPPTNSEPA", "length": 548 }, "evidence": [ { "id": "A0A287AKE4", "url": "https://omabrowser.org/oma/group/A0A287AKE4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MS45-1", "protein_name": "Copine-2", "gene_name": "CPNE2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAYIPGGGAPASGAAPVGSQYCVCKVELSVSGQNLLDRDVTSKSDPFCVLFTEMDGRWMEYDRTETAINNLNPAFSKKFVLDYHFEEVQKLKFALFDQDKSSMQLEEHDFLGQFSCSLGTIVSSKKITRPLLLMNDKPAGKGLITIAAQELSDNRVITLSLAGRKLDKKDLFGKSDPFLEFYKPGDDGKWMLVHRTEVIKYTLDPVWKPFTVPLVSLCDGDMEKPIQVMCYDYDNDGGHDFIGEFQTSVSQMCEARDGVPREFECINPKKQKKKKNYKNSGVIILRSCKITRDYSFLDYILGGCQLMFTVGIDFTASNGNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATQQQTATQYFILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGDSRMLRSHTGEEAARDIVQFVPFREFRNAAKETLAKAVLAELPQQVVQYFKHKNLPPTNSEPA", "length": 548 }, "evidence": [ { "id": "A0A287AKE4", "url": "https://omabrowser.org/oma/group/A0A287AKE4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HIK6-1", "protein_name": "Copine-2", "gene_name": "Cpne2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAYIPDGGAPATGAIPLASQCCVCKVELSVSGQNLLDRDVTSKSDPFCVLFTEDNGRWMEYDRTETAINNLNPAFSKKFVLDYHFEEVQKLKFALFDQDKSSAQLDEHDFLGQFSCSLGTIVSSKKITRPLLLMNDKPAGKGLITIAAQELSDNRVITLSLAGRKLDKKDLFGKSDPFLEFYKPGDDGKWMLVHRTEVIKYTLDPVWKPFTVPLVSLCDGDLEKPVQVMCYDYDSNGGHDFIGEFQTSVLQMSEARDGVPLEMECINPKKQRKKKSYKNSGIIILRSCKIHRNYSFLDYILGGCQLMFTVGIDFTASNGNPMDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATQQQTATQYFILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGDNRRLRSHTGEEAARDIVQFVPFREFRNAAKETLAKAVLAELPQQVVQYFKHKNLPPTNSEPA", "length": 548 }, "evidence": [ { "id": "A0A287AKE4", "url": "https://omabrowser.org/oma/group/A0A287AKE4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P59108-1", "protein_name": "Copine-2", "gene_name": "Cpne2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAYIPDGGAPTAGAIPLGSQCCVCKVELSVSGQNLLDRDVTSKSDPFCVLFIEDNGRWMEFDRTETAVNNLNPAFSKKFVLDYHFEEVQKLKFALFDQDKSSAQLDEHDFLGQFSCSLGTIVSSKKITRPLLLMNDKPAGKGVITIAAQELSDNRVITLSLAGRKLDKKDLFGKSDPFLEFYKPGDDGKWMLVHRTEVIKYTLDPVWKPFTVPLVSLCDGDLEKPIQVMCYDYDSNGGHDFIGEFQTSVLQMSEARDGVPLEIECINPKKQRKKKSYKNSGIIILRSCKIHRNYSFLDYILGGCQLMFTVGIDFTASNGNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATQQQTATQYFILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGDNRRLRSHTGEEAARDIVQFVPFREFRNAAKETLAKAVLAELPQQVVQYFKHKNLPPTNSEPA", "length": 548 }, "evidence": [ { "id": "A0A287AKE4", "url": "https://omabrowser.org/oma/group/A0A287AKE4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54FY7-1", "protein_name": "Copine-E", "gene_name": "cpnE", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDSSIVNLSKEGDSNFSSATINLSKVDDTVNVSNATINLSKVTIDPSNQMSNPSNQGINLSKCTKVELRFKCMNLKDMDTFSKSDPQIFVYEKKGNNNNNNNSKPILIGSTEMISNNLNPVFKKTVTIDYHFERIQNLKFEVLDIDGGGKNDTIGDFSITLGNIISKPGKKVIGEIKCNGKQTGTIEIIAEEIQETGQNIILKLQGSKLDKKDLFSSDPFFKIFKSSANGNLLVYQSPVIKSNINPIYNPIIFKLEEFNGGDMFRELTFEFWDYDTIGDNDFIGSFKTTTDEILKGQVREFTLINPKKLSKSSYKNSGKIVFTDARLIAQPTFIDYLSGGCEINLMIAIDCTASNGMPSDRTSLHYNTPTHESEYARSILAVGNVLAPYDSDGKIELLGFGAERFGGVTSHCFQFGPKAEARGIEEVLSTYNKVIPTIKLSYPTNFQEIIKHAHKKSIKGVDSKNQKYTILLILTDGEITDMEETIEEIVKASSKAPLSIVIVGVGIASFELMKKLDGDENQLSDKNGVIATRDIVQFVPFKKYENDPEQLAAETLCEIPEQLIGYMKSQNYFPNMKN", "length": 579 }, "evidence": [ { "id": "A0A287AKE4", "url": "https://omabrowser.org/oma/group/A0A287AKE4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q96FN4-1", "protein_name": "Copine-2", "gene_name": "CPNE2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAHIPSGGAPAAGAAPMGPQYCVCKVELSVSGQNLLDRDVTSKSDPFCVLFTENNGRWIEYDRTETAINNLNPAFSKKFVLDYHFEEVQKLKFALFDQDKSSMRLDEHDFLGQFSCSLGTIVSSKKITRPLLLLNDKPAGKGLITIAAQELSDNRVITLSLAGRRLDKKDLFGKSDPFLEFYKPGDDGKWMLVHRTEVIKYTLDPVWKPFTVPLVSLCDGDMEKPIQVMCYDYDNDGGHDFIGEFQTSVSQMCEARDSVPLEFECINPKKQRKKKNYKNSGIIILRSCKINRDYSFLDYILGGCQLMFTVGIDFTASNGNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATQQRTATQYFILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGDSRMLRSHTGEEAARDIVQFVPFREFRNAAKETLAKAVLAELPQQVVQYFKHKNLPPTNSEPA", "length": 548 }, "evidence": [ { "id": "A0A287AKE4", "url": "https://omabrowser.org/oma/group/A0A287AKE4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKE4", "url": "https://www.uniprot.org/uniprotkb/A0A287AKE4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKE4", "url": "https://www.uniprot.org/uniprotkb/A0A287AKE4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKE4", "url": "https://www.uniprot.org/uniprotkb/A0A287AKE4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKE4", "url": "https://www.uniprot.org/uniprotkb/A0A287AKE4" } ], "pmid": "" }, { "name": "calcium-dependent phospholipid binding", "id": "GO:0005544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005544", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKE4", "url": "https://www.uniprot.org/uniprotkb/A0A287AKE4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cellular response to calcium ion", "id": "GO:0071277", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071277", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKE4", "url": "https://www.uniprot.org/uniprotkb/A0A287AKE4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 412, "end_pos": 414, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AKE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKE4" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 131, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 412, "end_pos": 414 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AKF8-1", "uniprot_ac": "A0A287AKF8", "uniprot_id": "A0A287AKF8_PIG", "mass": { "chemical_mass": 16883.0, "monoisotopic_mass": 16883.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A287AKF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AKF8", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF8", "locus": {} } ], "crossref": [ { "id": "A0A287AKF8", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AKF8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039234", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039234", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR051276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12286", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12286", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12286:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12286:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A287AKF8", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAANQQRPFHSVVFSVSGFPGEFVTEEVAREQVSPKRSTLLPWAVAGSCREKLQRVLERSALKLGRPTLPSEVGMIVCAVTNPASLDEMAAQAAVILNCVRPVSNQHFFVLEQGICSCLAECGSSCSREPQVRQPHRSADLEIEVESPRETCWS", "length": 154, "header": "tr|A0A287AKF8-1|A0A287AKF8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287AKF8-1" }, "isoforms": [ { "isoform_ac": "A0A287AKF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF8/entry#A0A287AKF8-1", "sequence": { "sequence": "MAANQQRPFHSVVFSVSGFPGEFVTEEVAREQVSPKRSTLLPWAVAGSCREKLQRVLERSALKLGRPTLPSEVGMIVCAVTNPASLDEMAAQAAVILNCVRPVSNQHFFVLEQGICSCLAECGSSCSREPQVRQPHRSADLEIEVESPRETCWS", "length": 154, "header": "tr|A0A287AKF8-1|A0A287AKF8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287AKF8-1" }, "locus": { "chromosome": "10", "start_pos": 19273512, "end_pos": 19270799, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038194.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038194.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044381.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044381.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKF8", "url": "https://www.uniprot.org/uniprotkb/A0A287AKF8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AKF8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 154, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AKF8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AKF8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AKG5-1", "uniprot_ac": "A0A287AKG5", "uniprot_id": "A0A287AKG5_PIG", "mass": { "chemical_mass": 52844.0, "monoisotopic_mass": 52844.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF410", "type": "recommended", "evidence": [ { "id": "A0A287AKG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5" } ] } ], "protein_names": [ { "name": "Zinc finger protein 410", "type": "recommended", "evidence": [ { "id": "A0A287AKG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transcription factor that binds to the sequence motif 5'-CATCCCATAATA-3', and is specifically required to silence expression of fetal hemoglobin in adult erythroid cells. Prevents expression of fetal hemoglobin genes HBG1 and HBG2 through CHD4: acts as a direct transcriptional activator of CHD4, a central component of the NuRD complex that represses transcription of fetal hemoglobin genes HBG1 and HBG2 in erythroid cells. May also activate transcription of matrix-remodeling genes such as MMP1 during fibroblast senescence. May activate transcription of the gap junction gene GJC1, perhaps in response to increasing glucose. However, recent studies suggest that ZNF410 is dedicated to regulate expression of a single gene: CHD4.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RL91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RL91#function" }, { "database": "UniProtKB", "id": "ARBA00055956", "url": "https://www.uniprot.org/uniprotkb/ARBA00055956#function" }, { "database": "UniProtKB", "id": "A0A5G2RN78", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RN78#function" }, { "database": "UniProtKB", "id": "A0A287AKG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5#function" }, { "database": "UniProtKB", "id": "A0A287BGT2", "url": "https://www.uniprot.org/uniprotkb/A0A287BGT2#function" }, { "database": "UniProtKB", "id": "F1S3H6", "url": "https://www.uniprot.org/uniprotkb/F1S3H6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AKG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF410", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5", "locus": { "chromosome": "7", "start_pos": 97243614, "end_pos": 97195975, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002352", "url": "https://www.ensembl.org/id/ENSSSCG00000002352" } ] } } ], "crossref": [ { "id": "A0A287AKG5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AKG5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002352", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002352", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AKG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGT2", "url": "https://www.uniprot.org/uniprotkb/A0A287BGT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGT2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RL91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RL91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RL91-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RL91-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RN78", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RN78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RN78-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RN78-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3H6", "url": "https://www.uniprot.org/uniprotkb/F1S3H6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3H6-1", "url": "https://www.uniprot.org/uniprotkb/F1S3H6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VCGRNSRPSDGRTAARDRKLLVQFVQNTSIPLGQGLVESEAKDITCLSLLPVTEASECSRLILPDDTPNHTNPKEVPSSAVLRSLQVNVGPDGEETRAQTVQKSPEFLSTPESPSLLQDLQPSDSTSFILLNLTRAGLGSSAEHLVFVQDEAEDSGNDFLSSESTDSSIPWFLRVQELAHDSLIAATRAQLAKNAKTSSNGENVHLGSGDGQPKDSGPLPQVEKKLKCTVEGCDRTFVWPAHFKYHLKTHRNDRSFICPAEGCGKSFYVLQRLKVHMRTHNGEKPFMCPESSCGKQFTTAGNLKNHLRIHTGEKPFLCEAQGCGRSFAEYSSLRKHLVVHSGEKPHQCQVCGKTFSQSGSRNVHMRKHHLQMGAAGSQEQEQTAEPLMGSNLLEEASVTSKNLVSMNSQPSLGGEPLDLPNTNSILGVDDEVLAEGSPRPLSSVPDVTHHLVTMQSGRQSYEVSVLTAVNPQELLNQGDLTERQT", "length": 485, "header": "tr|A0A287AKG5-1|A0A287AKG5_PIG Isoform 1 of Zinc finger protein 410 OS=Sus scrofa OX=9823 GN=ZNF410 PE=4 SV=2 CANONICAL=A0A287AKG5-1" }, "isoforms": [ { "isoform_ac": "A0A287AKG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5/entry#A0A287AKG5-1", "sequence": { "sequence": "VCGRNSRPSDGRTAARDRKLLVQFVQNTSIPLGQGLVESEAKDITCLSLLPVTEASECSRLILPDDTPNHTNPKEVPSSAVLRSLQVNVGPDGEETRAQTVQKSPEFLSTPESPSLLQDLQPSDSTSFILLNLTRAGLGSSAEHLVFVQDEAEDSGNDFLSSESTDSSIPWFLRVQELAHDSLIAATRAQLAKNAKTSSNGENVHLGSGDGQPKDSGPLPQVEKKLKCTVEGCDRTFVWPAHFKYHLKTHRNDRSFICPAEGCGKSFYVLQRLKVHMRTHNGEKPFMCPESSCGKQFTTAGNLKNHLRIHTGEKPFLCEAQGCGRSFAEYSSLRKHLVVHSGEKPHQCQVCGKTFSQSGSRNVHMRKHHLQMGAAGSQEQEQTAEPLMGSNLLEEASVTSKNLVSMNSQPSLGGEPLDLPNTNSILGVDDEVLAEGSPRPLSSVPDVTHHLVTMQSGRQSYEVSVLTAVNPQELLNQGDLTERQT", "length": 485, "header": "tr|A0A287AKG5-1|A0A287AKG5_PIG Isoform 1 of Zinc finger protein 410 OS=Sus scrofa OX=9823 GN=ZNF410 PE=4 SV=2 CANONICAL=A0A287AKG5-1" }, "locus": { "chromosome": "7", "start_pos": 97243033, "end_pos": 97198031, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061749.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061749.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044493.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044493.2" } ] } }, { "isoform_ac": "A0A287BGT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5/entry#A0A287BGT2-1", "sequence": { "sequence": "MLSDELESKPELLVQFVQNTSIPLGQGLVESEAKDITCLSLLPVTEASECSRLILPDDTPNHTNPKEVPSSAVLRSLQVNVGPDGEETRAQTVQKSPEFLSTPESPSLLQDLQPSDSTSFILLNLTRAGLGSSAEHLVFVQDEAEDSGNDFLSSESTDSSIPWFLRVQELAHDSLIAATRAQLAKNAKTSSNGENVHLGSGDGQPKDSGPLPQVEKKLKCTVEGCDRTFVWPAHFKYHLKTHRNDRSFICPAEGCGKSFYVLQRLKVHMRTHNGEKPFMCPESSCGKQFTTAGNLKNHLRIHTGEKPFLCEAQGCGRSFAEYSSLRKHLVVHSGEKPHQCQVCGKTFSQSGSRNVHMRKHHLQMGAAGSQEQEQTEVLAEGSPRPLSSVPDVTHHLVTMQSGRQSYEVSVLTAVNPQELLNQGDLTERQT", "length": 430, "header": "tr|A0A287BGT2-1|A0A287BGT2_PIG Computationally mapped isoform of Zinc finger protein 410 OS=Sus scrofa OX=9823 GN=ZNF410 PE=4 SV=2 CANONICAL=A0A287AKG5-1" }, "locus": { "chromosome": "7", "start_pos": 97243033, "end_pos": 97210553, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047629.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047629.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055346.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055346.2" } ] } }, { "isoform_ac": "A0A5G2QUF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5/entry#A0A5G2QUF7-1", "sequence": { "sequence": "MLSDELESKPELLVQFVQNTSIPLGQGLVESEAKDITCLSLLPVTEASECSRLILPDDTPNHTNPKEVPSSAVLRSLQVNVGPDGEETRAQTVQKSPEFLSTPESPSLLQDLQPSDSTSFILLNLTRAV", "length": 129, "header": "tr|A0A5G2QUF7-1|A0A287AKG5_PIG Computationally mapped isoform of Zinc finger protein 410 OS=Sus scrofa OX=9823 GN=ZNF410 PE=4 SV=1 CANONICAL=A0A287AKG5-1" }, "locus": { "chromosome": "7", "start_pos": 97217147, "end_pos": 97210553, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090220.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090220.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068581.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068581.1" } ] } }, { "isoform_ac": "A0A5G2RL91-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5/entry#A0A5G2RL91-1", "sequence": { "sequence": "MLSDELESKPELLVQFVQNTSIPLGQGLVESEAKDITCLSLLPVTEASECSRLILPGPIPWTVSGKPSCSDDTPNHTNPKEVPSSAVLRSLQVNVGPDGEETRAQTVQKSPEFLSTPESPSLLQDLQPSDSTSFILLNLTRAGLGSSAEHLVFVQDEAEDSGNDFLSSESTDSSIPWFLRVQELAHDSLIAATRAQLAKNAKTSSNGENVHLGSGDGQPKDSGPLPQVEKKLKCTVEGCDRTFVWPAHFKYHLKTHRNDRSFICPAEGCGKSFYVLQRLKVHMRTHNGEKPFMCPESSCGKQFTTAGNLKNHLRIHTGEKPFLCEAQGCGRSFAEYSSLRKHLVVHSGEKPHQCQVCGKTFSQSGSRNVHMRKHHLQMGAAGSQEQEQTAEPLMGSNLLEEASVTSKNLVSMNSQPSLGGEPLDLPNTNSILGVDDEVLAEGSPRPLSSVPDVTHHLVTMQSGRQSYEVSVLTAVNPQE", "length": 479, "header": "tr|A0A5G2RL91-1|A0A287AKG5_PIG Computationally mapped isoform of Zinc finger protein 410 OS=Sus scrofa OX=9823 GN=ZNF410 PE=4 SV=2 CANONICAL=A0A287AKG5-1" }, "locus": { "chromosome": "7", "start_pos": 97236264, "end_pos": 97210553, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081268.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081268.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073023.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073023.2" } ] } }, { "isoform_ac": "A0A5G2RN78-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5/entry#A0A5G2RN78-1", "sequence": { "sequence": "MLSDELESKPELLVQFVQNTSIPLGQGLVESEAKDITCLSLLPVTEASECSRLILPGLGSSAEHLVFVQDEAEDSGNDFLSSESTDSSIPWFLRVQELAHDSLIAATRAQLAKNAKTSSNGENVHLGSGDGQPKDSGPLPQVEKKLKCTVEGCDRTFVWPAHFKYHLKTHRNDRSFICPAEGCGKSFYVLQRLKVHMRTHNGEKPFMCPESSCGKQFTTAGNLKNHLRIHTGEKPFLCEAQGCGRSFAEYSSLRKHLVVHSGEKPHQCQVCGKTFSQSGSRNVHMRKHHLQMGAAGSQEQEQTAEPLMGSNLLEEASVTSKNLVSMNSQPSLGGEPLDLPNTNSILGVDDEVLAEGSPRPLSSVPDVTHHLVTMQSGRQSYEVSVLTAVNPQELLNQGDLTERQT", "length": 405, "header": "tr|A0A5G2RN78-1|A0A287AKG5_PIG Computationally mapped isoform of Zinc finger protein 410 OS=Sus scrofa OX=9823 GN=ZNF410 PE=4 SV=2 CANONICAL=A0A287AKG5-1" }, "locus": { "chromosome": "7", "start_pos": 97243033, "end_pos": 97210553, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071833.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071833.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074230.2", "url": "https://www.ensembl.org/id/ENSSSCP00000074230.2" } ] } }, { "isoform_ac": "F1S3H6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5/entry#F1S3H6-1", "sequence": { "sequence": "MLSEAKDITCLSLLPVTEASECSRLILPDDTPNHTNPKEVPSSAVLRSLQVNVGPDGEETRAQTVQKSPEFLSTPESPSLLQDLQPSDSTSFILLNLTRAGLGSSAEHLVFVQDEAEDSGNDFLSSESTDSSIPWFLRVQELAHDSLIAATRAQLAKNAKTSSNGENVHLGSGDGQPKDSGPLPQVEKKLKCTVEGCDRTFVWPAHFKYHLKTHRNDRSFICPAEGCGKSFYVLQRLKVHMRTHNGEKPFMCPESSCGKQFTTAGNLKNHLRIHTGEKPFLCEAQGCGRSFAEYSSLRKHLVVHSGEKPHQCQVCGKTFSQSGSRNVHMRKHHLQMGAAGSQEQEQTAEPLMGSNLLEEASVTSKNLVSMNSQPSLGGEPLDLPNTNSILGVDDEVLAEGSPRPLSSVPDVTHHLVTMQSGRQSYEVSVLTAVNPQELLNQGDLTERQT", "length": 449, "header": "tr|F1S3H6-1|A0A287AKG5_PIG Computationally mapped isoform of Zinc finger protein 410 OS=Sus scrofa OX=9823 GN=ZNF410 PE=4 SV=4 CANONICAL=A0A287AKG5-1" }, "locus": { "chromosome": "7", "start_pos": 97243033, "end_pos": 97210553, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002616.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002616.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002551.5", "url": "https://www.ensembl.org/id/ENSSSCP00000002551.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUF7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5" } ], "pmid": "" }, { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKG5", "url": 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"categories": [ "Protein Classification" ] }, { "id": "PTHR24070", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24070", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020927869", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927869", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AKH0", "url": "https://www.uniprot.org/uniprotkb/A0A287AKH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKH0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Transcript", "id": "ENSSSCT00000060113.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060113.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044389.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044389.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": 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"GTP-binding protein Di-Ras2", "gene_name": "Diras2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVDSIPIMLVGNKCDESPNREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQIDGKKSKQQKRKEKLKGKCVVM", "length": 199 }, "evidence": [ { "id": "A0A287AKH0", "url": "https://omabrowser.org/oma/group/A0A287AKH0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5PR73-1", "protein_name": "GTP-binding protein Di-Ras2", "gene_name": "Diras2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPNREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQIDGKKSKQQKRKEKLKGKCVVM", "length": 199 }, "evidence": [ { "id": "A0A287AKH0", "url": 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"length": 1559, "header": "tr|A0A287AKK3-1|A0A287AKK3_PIG Isoform 1 of WD repeat domain 97 OS=Sus scrofa OX=9823 GN=WDR97 PE=4 SV=3 CANONICAL=A0A287AKK3-1" }, "locus": { "chromosome": "4", "start_pos": 597695, "end_pos": 588761, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063356.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063356.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044431.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044431.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1336, "start_aa": "Thr", "end_pos": 1336, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1336", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 514, "start_aa": "Thr", "end_pos": 514, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr514", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 638, "start_aa": "Thr", "end_pos": 638, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr638", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 901, "start_aa": "Thr", "end_pos": 901, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr901", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKK3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKK3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1470, "end_pos": 1472, "annotation": "n_glycosylation_sequon" }, { "start_pos": 335, "end_pos": 337, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], 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"ENSSSCP00000075519.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075519.1" } ] } }, { "isoform_ac": "A0A8W4F8A1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKU6/entry#A0A8W4F8A1-1", "sequence": { "sequence": "MAAYSYRPGPGAGPAAGAALPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGGVSAASSYSSAAPYSTLLFLLRENIILNY", "length": 82, "header": "tr|A0A8W4F8A1-1|A0A287AKU6_PIG Computationally mapped isoform of Programmed cell death protein 6 OS=Sus scrofa OX=9823 GN=PDCD6 PE=1 SV=1 CANONICAL=A0A287AKU6-1" }, "locus": { "chromosome": "16", "start_pos": 79832188, "end_pos": 79830254, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095186.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095186.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075596.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075596.1" } ] } }, { "isoform_ac": "A0A8W4FEF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKU6/entry#A0A8W4FEF7-1", "sequence": { "sequence": "MLKGTASALHVQPAPRGKGLPKRVLDPGRSLTSASSSAVLLGPPQARAKRGRCLATGPPQDWPRQLRRPPRKLRGRPAQSRSRRKWSRPEPPASQGKLAAPRPMAAYSYRPGPGAGPAAGAALPDQSFLWNVFQRCDRRPAGPGGASALVALPDSRPFVPAMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV", "length": 282, "header": "tr|A0A8W4FEF7-1|A0A287AKU6_PIG Computationally mapped isoform of Programmed cell death protein 6 OS=Sus scrofa OX=9823 GN=PDCD6 PE=1 SV=1 CANONICAL=A0A287AKU6-1" }, "locus": { "chromosome": "16", "start_pos": 79832497, "end_pos": 79819426, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102405.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102405.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077694.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077694.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCX9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCX9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "angiogenesis", "id": "GO:0001525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001525", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AKU6" } ], "pmid": "" }, { "name": "response to calcium ion", "id": "GO:0051592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051592", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AKU6" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AKU6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AKU6" } ], "pmid": "" }, { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AKU6" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AKU6" } ], "pmid": "" }, { "name": "ER to Golgi transport vesicle membrane", "id": "GO:0012507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012507", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AKU6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AKU6" } ], "pmid": "" }, { "name": "calcium-dependent protein binding", "id": "GO:0048306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048306", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AKU6" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A287AKU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AKU6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AKU6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 292, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AKU6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AKU6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AKU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKU6" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 124, "end_pos": 159, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 }, { "start_pos": 182, "end_pos": 184 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AKX2-1", "uniprot_ac": "A0A287AKX2", "uniprot_id": "A0A287AKX2_PIG", "mass": { "chemical_mass": 165101.0, "monoisotopic_mass": 165101.0 }, "refseq": { "ac": "XP_020922520", "name": "G patch domain-containing protein 8 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922520" }, "gene_names": [ { "name": "GPATCH8", "type": "recommended", "evidence": [ { "id": "A0A287AKX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX2" } ] }, { "name": "GPATCH8", "type": "synonym", "evidence": [ { "id": "XP_020922520", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922520" } ] } ], "protein_names": [ { "name": "G patch domain-containing protein 8 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020922520", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922520" } ] }, { "name": "G-patch domain containing 8", "type": "synonym", "evidence": [ { "id": "A0A287AKX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AKX2", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GPATCH8", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX2", "locus": { "chromosome": "12", "start_pos": 18856566, "end_pos": 18776560, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017357", "url": "https://www.ensembl.org/id/ENSSSCG00000017357" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017357", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017357", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102160693", "url": "https://www.ncbi.nlm.nih.gov/gene/102160693", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102160693", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102160693", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AKX2", "url": "https://www.orthodb.org/?gene=A0A287AKX2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17614", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17614", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17614:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17614:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01585", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01585", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27597", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27597", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020922520", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922520", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AKX2", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKX2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADRFSRFNEDRDFQGNHFDQYEEGHLEIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMGRMEMELDYAEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQYQKHQEFDNHINSYDHAHKQRLKDLKQREFARNVSSRSRKDEKKQEKALRRLHELAEQRKQAECAPGSGPMFRPTTVAVDEEGGDDDKDESATNSGTSATATCGLGSEFSTDRGGPFTAVQITNTPGLSQAPGLASQGVSFGIKNNLGTPLQKLGVSFSFAKKAPVKLESIASVFKDHAEEGTSEDGTKADEKSSDQGLQKVGDSDGNSNLDGKKEDEDPQDGGSLASTLSKLKRMKREEGAGATEPEYYHYIPPAHCKVKPNFPFLLFMRASEQMEGDSSTHPKNALESKKSSSPKPKGCIKVAASQGAEKTVSEVSEQQMETSVAEPSEPGSKSETKKSSGGDASEHSLESQKDAEIQICESNPPKETSQASPARKDSKEGPKHPTGPFFPVLSKDESTALQWPSELLIFTKAEPSISYSCNPLYFDFKLSRNKDARAKGTEKPKDIGGSSKDHLQDLDLGEPNKGKEEGENVDHSSGGKMDAPASGSACSGLNKQEPGGSHRSETGDTGRSLPSKKERSGRSHRHKKKKKHKKSSKHKRKHKTDPEEKSSKAESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPPGSGSPAPPRRRRRAQDDSQRRSLPAEEGSSGKKDEGGGGNSSQDHGGRKHKGEPPTSSCQRRASTKRSSRSSHRSRPSSGDEDSDDASSRRLHQKSPSQYSEEEEEEEEEEEESGSEHSRSRSRSGRHHSSRRSSRRSYSSSSDASSDQSCYSRQHSYSDDSYSDYSDRSRRHSKRSHDSDDSDYASSKHRSKRHKYSSSDDDYSISCSQSRSRSRSHTRERSRSRGHSRSSSCSRSRSKRRSRSTTAHSWQRSRSYSRDRSRSTRSPSQRSGSRKGSWGHESPEERRSGRRDFIRSKIYRSQSPHYFRSGRGEGPGEKKKEDGRGDDSKGIGAPSQNSSVGVGRGSEGDCSPEDKNSVTAKLLLEKIQSRKVERKPSVSEEVLATPNKAGLKLKDPPQGYFGPKLPPSLGSKPVLPLIGKLPATRKPNTKKCEESGLERGEEQEQSETEEGPPGNSDAPFGHQFPSEETAGPLSDPPLEEPKSEEATADHPVAPLGTPVHSDCYPGDPTIPHNYLPDPSDGDTLESLDSGSQPGPVESSLLPIASDLEHFPSYAPPSGEPSIESADGAEDASLAPLESQPITFTPEEMEKYSKLQQAAQQHIQQQLLAKQVKAFPASAALAPATPALQPIHIQQPATASATSITTVQHAILQHHAAAAAAAIGIHPHPHPQPLAQVHHIPQPHLTPISLSHLTHSIIPGHPATFLASHPIHIIPASAIHPGPFTFHPVPHAALYPTLLAPRPAAAAATALHLHPLLHPIFSGQDLQHPPSHGT", 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"https://www.uniprot.org/uniprotkb/A0A287ALB3/entry#names_and_taxonomy" } ] }, { "name": "FYVE, RhoGEF and PH domain-containing protein 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020947725", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947725" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ALB3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALB3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FGD4", "url": "https://www.uniprot.org/uniprotkb/A0A287ALB3", "locus": { "chromosome": "5", "start_pos": 41680452, "end_pos": 41879062, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000530", "url": "https://www.ensembl.org/id/ENSSSCG00000000530" } ] } } ], "crossref": [ { "id": "A0A287ALB3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ALB3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000530", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000530", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13236", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13236", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15741", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15741", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15791", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15791", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100623278", "url": "https://www.ncbi.nlm.nih.gov/gene/100623278", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000306", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000306", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051092", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051092", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623278", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623278", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287ALB3", "url": "https://www.orthodb.org/?gene=A0A287ALB3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12673", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12673", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12673:SF98", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12673:SF98", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01363", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01363", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-193648", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020947725", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947725", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ALB3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5K1U609", "url": "https://www.uniprot.org/uniprotkb/A0A5K1U609", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5K1U609-1", "url": "https://www.uniprot.org/uniprotkb/A0A5K1U609-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GQX7", "url": "https://www.uniprot.org/uniprotkb/K7GQX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GQX7-1", "url": "https://www.uniprot.org/uniprotkb/K7GQX7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GSY2", "url": "https://www.uniprot.org/uniprotkb/K7GSY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GSY2-1", "url": "https://www.uniprot.org/uniprotkb/K7GSY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQATPPGVRSPLGSPLSSRSRPDLGVGGRRVVSERGQMSGEGDYNFRRVAIRRKSNLSYLPLGTPRPWSRPSSHLGWAETATFRGQAPADSPGSSICPKITIVPPCLKSSTTTLIDENVCVEEAQGINGKTPAKHPAPSPKPQVPPKPLHLQNSPSSNIHQTPRHKALSSAKPRMEEVKPASASCVSKEKPSKVSDLISRFEGGSPLTNYSELKKDSAINLNVPRTPGRHGLTTTPQQKLLSQYLPEKQGHDTDHTQGVQTCVVNGMVAAQNQMECEEDKAATLSPDTPVQTSEPLPDTDLVNGEKEEKTTVPALPTTSDCEGSASDSSCRTPPVGPVLPLEEGRADTEDKVQERENGESPLELDQLDQQHEMKETNEQKLHKIANELLLTERAYVSRLDLLDQVFYCKLLEEANRGSFPAEMVNKIFSNISSINAFHSKFLLPELEKRMQEWETTPRIGDILQKLAPFLKMYGEYVKGFDNAMELVKNMTERIPQFKSVVEEIQKQKICGNLTLQHHMLEPVQRIPRYEMLLKDYLRKLPPDSLDWNDAKKSLEIISTAASHSNSAIRKMENLKKLLEIYEMLGEEEDIVNPSNELIKEGQILKLAARNTSAQERYLFLFNNMLLYCVPRFSLVGSKFTVRTRVGIDGMKIVETHNEEYPHTFQVSGKERTLELQASSEQDKEEWIKALQETIDAFHQRHETFRNAIAKDNDIQSEVSTAELGKRAPRWIRDNEVTMCMKCKEPFNALTRRRHHCRACGHVVCWKCSDYKAQLEYDGGKLSKVCKDCYQIISGFTDSEEKKRKGILEIESAEVSGNSVVCSFLQYMEKSKPWQKAWCVIPKQDPLVLYMYGAPQDVRAQATIPLLGYVVDDMPRSADLPHSFKLTQSKSVHSFAADSEELKQKWLKIILLAVTGETPDGLSKHLDTLDSHPESKRKSEC", "length": 940, "header": "tr|A0A287ALB3-1|A0A287ALB3_PIG Isoform 1 of FYVE, RhoGEF and PH domain containing 4 OS=Sus scrofa OX=9823 GN=FGD4 PE=1 SV=3 CANONICAL=A0A287ALB3-1" }, "isoforms": [ { "isoform_ac": "A0A287ALB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALB3/entry#A0A287ALB3-1", "sequence": { "sequence": "MQATPPGVRSPLGSPLSSRSRPDLGVGGRRVVSERGQMSGEGDYNFRRVAIRRKSNLSYLPLGTPRPWSRPSSHLGWAETATFRGQAPADSPGSSICPKITIVPPCLKSSTTTLIDENVCVEEAQGINGKTPAKHPAPSPKPQVPPKPLHLQNSPSSNIHQTPRHKALSSAKPRMEEVKPASASCVSKEKPSKVSDLISRFEGGSPLTNYSELKKDSAINLNVPRTPGRHGLTTTPQQKLLSQYLPEKQGHDTDHTQGVQTCVVNGMVAAQNQMECEEDKAATLSPDTPVQTSEPLPDTDLVNGEKEEKTTVPALPTTSDCEGSASDSSCRTPPVGPVLPLEEGRADTEDKVQERENGESPLELDQLDQQHEMKETNEQKLHKIANELLLTERAYVSRLDLLDQVFYCKLLEEANRGSFPAEMVNKIFSNISSINAFHSKFLLPELEKRMQEWETTPRIGDILQKLAPFLKMYGEYVKGFDNAMELVKNMTERIPQFKSVVEEIQKQKICGNLTLQHHMLEPVQRIPRYEMLLKDYLRKLPPDSLDWNDAKKSLEIISTAASHSNSAIRKMENLKKLLEIYEMLGEEEDIVNPSNELIKEGQILKLAARNTSAQERYLFLFNNMLLYCVPRFSLVGSKFTVRTRVGIDGMKIVETHNEEYPHTFQVSGKERTLELQASSEQDKEEWIKALQETIDAFHQRHETFRNAIAKDNDIQSEVSTAELGKRAPRWIRDNEVTMCMKCKEPFNALTRRRHHCRACGHVVCWKCSDYKAQLEYDGGKLSKVCKDCYQIISGFTDSEEKKRKGILEIESAEVSGNSVVCSFLQYMEKSKPWQKAWCVIPKQDPLVLYMYGAPQDVRAQATIPLLGYVVDDMPRSADLPHSFKLTQSKSVHSFAADSEELKQKWLKIILLAVTGETPDGLSKHLDTLDSHPESKRKSEC", "length": 940, "header": "tr|A0A287ALB3-1|A0A287ALB3_PIG Isoform 1 of FYVE, RhoGEF and PH domain containing 4 OS=Sus scrofa OX=9823 GN=FGD4 PE=1 SV=3 CANONICAL=A0A287ALB3-1" }, "locus": { "chromosome": "5", "start_pos": 41878861, "end_pos": 41684260, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039923.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039923.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044700.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044700.3" } ] } }, { "isoform_ac": "A0A5K1U609-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALB3/entry#A0A5K1U609-1", "sequence": { "sequence": "MGGCSSICPKITIVPPCLKSSTTTLIDENVCVEEAQGINGKTPAKHPAPSPKPQVPPKPLHLQNSPSSNIHQTPRHKALSSAKPRMEEVKPASASCVSKEKPSKVSDLISRFEGGSPLTNYSELKKDSAINLNVPRTPGRHGLTTTPQQKLLSQYLPEKQGHDTDHTQGVQTCVVNGMVAAQNQMECEEDKAATLSPDTPVQTSEPLPDTDLVNGEKEEKTTVPALPTTSDCEGSASDSSCRTPPVGPVLPLEEGRADTEDKVQERENGESPLELDQLDQQHEMKETNEQKLHKIANELLLTERAYVSRLDLLDQVFYCKLLEEANRGSFPAEMVNKIFSNISSINAFHSKFLLPELEKRMQEWETTPRIGDILQKLAPFLKMYGEYVKGFDNAMELVKNMTERIPQFKSVVEEIQKQKICGNLTLQHHMLEPVQRIPRYEMLLKDYLRKLPPDSLDWNDAKKSLEIISTAASHSNSAIRKMENLKKLLEIYEMLGEEEDIVNPSNELIKEGQILKLAARNTSAQERYLFLFNNMLLYCVPRFSLVGSKFTVRTRVGIDGMKIVETHNEEYPHTFQVSGKERTLELQASSEQDKEEWIKALQETIDAFHQRHETFRNAIAKDNDIQSEVSTAELGKRAPRWIRDNEVTMCMKCKEPFNALTRRRHHCRACGHVVCWKCSDYKAQLEYDGGKLSKVCKDCYQIISGFTDSEEKKRKGILEIESAEVSGNSVVCSFLQYMEKSKPWQKAWCVIPKQDPLVLYMYGAPQDVRAQATIPLLGYVVDDMPRSADLPHSFKLTQSKSVHSFAADSEELKQKWLKIILLAVTEILVLEENFCFSSHHLHIPHDLWPSTKRSNEAASPVSY", "length": 863, "header": "tr|A0A5K1U609-1|A0A287ALB3_PIG Computationally mapped isoform of FYVE, RhoGEF and PH domain containing 4 OS=Sus scrofa OX=9823 GN=FGD4 PE=1 SV=2 CANONICAL=A0A287ALB3-1" }, "locus": { "chromosome": "5", "start_pos": 41806431, "end_pos": 41681456, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035951.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035951.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030671.4", "url": "https://www.ensembl.org/id/ENSSSCP00000030671.4" } ] } }, { "isoform_ac": "K7GQX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALB3/entry#K7GQX7-1", "sequence": { "sequence": "MLERNAFNRLISICPKITIVPPCLKSSTTTLIDENVCVEEAQGINGKTPAKHPAPSPKPQVPPKPLHLQNSPSSNIHQTPRHKALSSAKPRMEEVKPASASCVSKEKPSKVSDLISRFEGGSPLTNYSELKKDSAINLNVPRTPGRHGLTTTPQQKLLSQYLPEKQGHDTDHTQGVQTCVVNGMVAAQNQMECEEDKAATLSPDTPVQTSEPLPDTDLVNGEKEEKTTVPALPTTSDCEGSASDSSCRTPPVGPVLPLEEGRADTEDKVQERENGESPLELDQLDQQHEMKETNEQKLHKIANELLLTERAYVSRLDLLDQVFYCKLLEEANRGSFPAEMVNKIFSNISSINAFHSKFLLPELEKRMQEWETTPRIGDILQKLAPFLKMYGEYVKGFDNAMELVKNMTERIPQFKSVVEEIQKQKICGNLTLQHHMLEPVQRIPRYEMLLKDYLRKLPPDSLDWNDAKKSLEIISTAASHSNSAIRKMENLKKLLEIYEMLGEEEDIVNPSNELIKEGQILKLAARNTSAQERYLFLFNNMLLYCVPRFSLVGSKFTVRTRVGIDGMKIVETHNEEYPHTFQVSGKERTLELQASSEQDKEEWIKALQETIDAFHQRHETFRNAIAKDNDIQSEVSTAELGKRAPRWIRDNEVTMCMKCKEPFNALTRRRHHCRACGHVVCWKCSDYKAQLEYDGGKLSKVCKDCYQIISGFTDSEEKKRKGILEIESAEVSGNSVVCSFLQYMEKSKPWQKAWCVIPKQDPLVLYMYGAPQDVRAQATIPLLGYVVDDMPRSADLPHSFKLTQSKSVHSFAADSEELKQKWLKIILLAVTEILVLEENFCFSSHHLHIPHDLWPSTKRSNEAASPVSY", "length": 869, "header": "tr|K7GQX7-1|A0A287ALB3_PIG Computationally mapped isoform of FYVE, RhoGEF and PH domain containing 4 OS=Sus scrofa OX=9823 GN=FGD4 PE=1 SV=3 CANONICAL=A0A287ALB3-1" }, "locus": { "chromosome": "5", "start_pos": 41744551, "end_pos": 41681456, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033918.4", "url": "https://www.ensembl.org/id/ENSSSCT00000033918.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030301.3", "url": "https://www.ensembl.org/id/ENSSSCP00000030301.3" } ] } }, { "isoform_ac": "K7GSY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALB3/entry#K7GSY2-1", "sequence": { "sequence": "MLKKASHLTCSSICPKITIVPPCLKSSTTTLIDENVCVEEAQGINGKTPAKHPAPSPKPQVPPKPLHLQNSPSSNIHQTPRHKALSSAKPRMEEVKPASASCVSKEKPSKVSDLISRFEGGSPLTNYSELKKDSAINLNVPRTPGRHGLTTTPQQKLLSQYLPEKQGHDTDHTQGVQTCVVNGMVAAQNQMECEEDKAATLSPDTPVQTSEPLPDTDLVNGEKEEKTTVPALPTTSDCEGSASDSSCRTPPVGPVLPLEEGRADTEDKVQERENGESPLELDQLDQQHEMKETNEQKLHKIANELLLTERAYVSRLDLLDQVFYCKLLEEANRGSFPAEMVNKIFSNISSINAFHSKFLLPELEKRMQEWETTPRIGDILQKLAPFLKMYGEYVKGFDNAMELVKNMTERIPQFKSVVEEIQKQKICGNLTLQHHMLEPVQRIPRYEMLLKDYLRKLPPDSLDWNDAKKSLEIISTAASHSNSAIRKMENLKKLLEIYEMLGEEEDIVNPSNELIKEGQILKLAARNTSAQERYLFLFNNMLLYCVPRFSLVGSKFTVRTRVGIDGMKIVETHNEEYPHTFQVSGKERTLELQASSEQDKEEWIKALQETIDAFHQRHETFRNAIAKDNDIQSEVSTAELGKRAPRWIRDNEVTMCMKCKEPFNALTRRRHHCRACGHVVCWKCSDYKAQLEYDGGKLSKVCKDCYQIISGFTDSEEKKRKGILEIESAEVSGNSVVCSFLQYMEKSKPWQKAWCVIPKQDPLVLYMYGAPQDVRAQATIPLLGYVVDDMPRSADLPHSFKLTQSKSVHSFAADSEELKQKWLKIILLAVTEILVLEENFCFSSHHLHIPHDLWPSTKRSNEAASPVSY", "length": 869, "header": "tr|K7GSY2-1|A0A287ALB3_PIG Computationally mapped isoform of FYVE, RhoGEF and PH domain containing 4 OS=Sus scrofa OX=9823 GN=FGD4 PE=1 SV=2 CANONICAL=A0A287ALB3-1" }, "locus": { "chromosome": "5", "start_pos": 41761387, "end_pos": 41681456, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036458.4", "url": "https://www.ensembl.org/id/ENSSSCT00000036458.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031023.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031023.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "K7GQX7", "url": "https://www.uniprot.org/uniprotkb/K7GQX7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623278", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623278", "resource": "KEGG Pathway" }, { "id": "R-SSC-193648", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "resource": "Reactome", "description": "NRAGE signals death through JNK" }, { "id": "R-SSC-416482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "resource": "Reactome", "description": "G alpha (12/13) signalling events" }, { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALB3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALB3" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALB3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALB3" } ], "pmid": "" }, { "name": "cell projection", "id": "GO:0042995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042995", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALB3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALB3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", 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] }, { "id": "PTHR10151", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10151", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10151:SF125", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10151:SF125", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01663", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01663", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001927569", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927569", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ALD4", "url": "https://www.uniprot.org/uniprotkb/A0A287ALD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALD4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSKFLWVCFLLAALTLAKTYSLQPDQQKVLLVSFDGFRWDYLYRVPTPHFHYVMKHGVHVKQVTNIFITKTYPNHYTLVTGLFAENHGIVANDMFDPILNKSFSLDNMDIYDSEFWEEATPIWITNQRAGHTSGAAMWPGTDVKIHESFPTHYLPYNESVSFEERVAKIIEWFTSKEPINLGLLYWEEPDDMGHHLGPDSPLMGPVISDTDHKLGYLIQMLKKAKLWNVLNLIITSDHGMTQCSEERVIELDQYLDRDHYTLIDQSPVAAILPKEGKFDEVYEALAHAHPNLTVYKKEEIPERWHYRYNSRIQPIIAVADNGWYVLRNKSDDFLLGNHGYDNALAEMHPIFLAHGPAFRKNFTREAMNSTDLYPLLCHLLNITGMPHNGSLRNVQDLLSSTAPRASPYTQSPPFLRGGVKPRENEQEESYAYFLGVSLGAIIVIVFLITFTKHLIRSQIPALPDFQSEISQPLLQA", "length": 477, "header": "tr|A0A287ALD4-1|A0A287ALD4_PIG Isoform 1 of Ectonucleotide pyrophosphatase/phosphodiesterase family member 5 OS=Sus scrofa OX=9823 GN=ENPP5 PE=1 SV=1 CANONICAL=A0A287ALD4-1" }, "isoforms": [ { "isoform_ac": "A0A287ALD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALD4/entry#A0A287ALD4-1", "sequence": { "sequence": 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"https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153376", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153376", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A2R8QE68-1", "protein_name": "3.6.1.29", "gene_name": "enpp5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPDFSVIRSCFLSCLLALLQTSGSQQEEQNQLLLVSFDGFRWDYINRVPTPNFHALMDEGVLVEKVENTYITKTYPNHYTLVTGLHAESHGVVANEMYDPIHNRSFSIEGPEVYDAWWWEEAEPLWVTNQKAGRKSGAAMWPGSDVAIGGTFPTHYLRYNASMLFETRVQKLIDWFSGPEAINFGVLYWEEPDESGHNLGPESPLMDVVLADIDEKLGFLREKLKSAGLYDKVNLIVTSDHGMTQLSHDKIIELDTYVSRDLYTWIDKSPVVGILPKEGKLEEVYGLLKNANPNMVVYKKEEIPDHYHYRHNARIMPLIIEVKEGWTVMQNRNGSFMLGNHGYNNSLPNMHPVFVARGPAFRRDYTKTSMRSVDLYPLMCSILALKPLPNNGSLSSVQDLLVETSTPKPTVTPVPRGPMVPPVPREPSYAWAVGCILGAGLVIGFLFIFVKQVTQRQLPPLYLSNSEITQPLL", "length": 473 }, "evidence": [ { "id": "A0A287ALD4", "url": "https://omabrowser.org/oma/group/A0A287ALD4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1N5W4-1", "protein_name": "Ectonucleotide pyrophosphatase/phosphodiesterase family member 5", "gene_name": "ENPP5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTSKLLRVSFMLAALTLSVTFSLQSDQPKVLLVSFDGFRWDYLYRVPTPHFHYIMKYGVQVQQVTNIFITKTYPNHYTLVTGLFAENHGIVANDMYDPILNKSFSLDDMDIYDSEFWEEATPIWITNQRAGHTSGAAMWPGTDVKIHGSFPTHYMPYNDSVSFEDRVAKIIEWFTSKEPISLGLLYWEEPDDMGHQLGPDSPLMGPVISDIDHKLGYLIQMLKKAKLWNVLNLIITSDHGMTQCSQERIIELDQYLDREHYTLIDQSPVAAILPREGKFDEVYEALAQAHPNLTVYKKEEVPERWHYKHNSRIQPILAVADDGWHILRNKSDDFLLGNHGYDNALAEMHPIFLAHGPAFRKNFTKAAMNSTDLYPLLCHLLNITALPHNGSLSNVQDLLISPTPRASPNTQTPPLLHGSVKPRENEQDESYAYFIGVSLGSVIVIVFLIVLIKHLIRSQIPALPDFQAEISQPLLQA", "length": 477 }, "evidence": [ { "id": "A0A287ALD4", "url": "https://omabrowser.org/oma/group/A0A287ALD4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3I3Q9-1", "protein_name": 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"tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIPEFLVVSCTLAALCHSVPLSLQTEQQKVLVVSFDGFRWDYLYKVPTPHFHYVMKNGVHVKQVTNVFITKTYPNHYTLVTGLFAENHGIVANDMFDPVLNKSFSLEHMNIYDSKFWEEATPLWITNQRAGHASGAAMWPGTDVKIHESYPTHYLPYNESVSFEDRVAKIIEWFTAKDPINLGFLYWEEPDDTGHDVGPDSPLMGPVISDIDHKLGYLIKMLKKAKLWNNINLIVTSDHGMTQCSKERVIELDQYLDKEHYTLIDHSPVAAILPKEGKFNEVYDALANAHPNLTVYKKEEIPERWHYKHSDRVQPIVAVADEGWYILQNKSDEFLLGNHGYDNALAEMHPIFLAHGPAFRKNFTKEAMNSTDLYSLVCHLLNVTALPHNGSFRNVQDLLSSAAPKAIPYTQSTTLPLGSAKPGEYEQEESYPYYIGISLGSLIAIVFFVVLIKHLIRSQMHTLQYMQVEVAQPLLQA", "length": 477 }, "evidence": [ { "id": "A0A287ALD4", "url": "https://omabrowser.org/oma/group/A0A287ALD4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54MJ8-1", "protein_name": "Type I phosphodiesterase/nucleotide pyrophosphatase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNNNNNNNNNNNNNNNNNNNNNNPNNNNNININVDHSYDDVDFNNKDPLFFSSGNEYMYRADEDDLEYDDDEDTNDGGGGGGGGSGNGGKKKKKKKEFLIDGFDENSESLVRSKDSDTIGYRIRNRLEYLEKGTKIIIFVGLITLTVVLCSIGLYFYAKDHKSPLVNYIHPTPVIVISLDGFRWDYLNRGLTPNIKKLIEDGSYHANYTIPQFPSKTFPNHYSIATGLYPENHGIISNHMYDPILNKTFDINKASVTDSEWYWGEPIWVTSEIHGIKSACYFWPGCGVMIKDRFPTYNKLPFTMDISAKTVFDTVFKWAQLDASEKPYLSMAYVHEVDDAGHIYGPDSQQVNDAIAYLDTQIGSLIDQLKSTNQYNSTNLIILSDHGMASVPKNQSIYLDDLTNDPSFSTKCYIRDMSPILSIFPIVGGLSIDEIYKSLTANSDINIKIYKKEDLPKELFFSLNENKRIAPIIGIVNLGYTLVQSKSTPTTSWELGNHGFNPSFEQMKSIFIGHGPNIKSLPIDDQNLPPFKNIEIYNFISTLLNIKSPSPNNGTTLLTDKLYLK", "length": 566 }, "evidence": [ { "id": "A0A287ALD4", "url": "https://omabrowser.org/oma/group/A0A287ALD4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9EQG7-1", "protein_name": "Ectonucleotide pyrophosphatase/phosphodiesterase family member 5", "gene_name": "Enpp5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIPEFLLASCTLATLCHSAPFSLQPEEQKVLVVSFDGFRWDYLYKVPTPHFHYIMKNGVHVNQVTNVFITKTYPNHYTLVTGLFAENHGIVANDMFDPILNKSFSLEHMDIYDSKFWEEATPIWITNQRAGHASGAAMWPGADVKIHDSFPTYYLPYNESVSFEDRVAKIIEWFTAKDPINLGFLYWEEPDDTGHDVGPDSPLMGSVISDVDHKLGYLIKMLKRAKLWNNVNLIVTSDHGMTQCSKQRVIELDRYLDKEHYTLIDHSPVAAILPKEGKFDEVYDALAGAHPNLTVYKKEEIPERWHYKHNDRVQPIVAVADEGWYILQNKSDDFLLGNHGYDNALAEMHPIFLAHGPAFRKNFTKEAMNSTDLYSLLCHLLNLTALPHNGSFWNVQDLLSSATPKPIPYTQSTTLLLGSDKPGEDEQEESYPYYIGVSLGSIIAMVFFVVLIKHLIRSQVHTLQYRQVEVAQPLLQA", "length": 477 }, "evidence": [ { "id": "A0A287ALD4", "url": "https://omabrowser.org/oma/group/A0A287ALD4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SU83-1", "protein_name": "nucleotide diphosphatase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MISGDTLSAKKPKSVPQEEDQDPPSQSIALLDNHTDSSGSDSSTRSISSCFIFTSLLLVTCIALSAASAFAFLFFSSQKPVLSLNQISKSPAFDRSVARPLKKLDKPVVLLISSDGFRFGYQFKTKLPSIHRLIANGTEAETGLIPVFPTLTFPNHYSIVTGLYPAYHGIINNHFVDPETGNVFTMASHEPEWWLGEPLWETVVNQGLKAATYFWPGSEVHKGSWNCPQGLCQNYNGSVPFDDRVDTILSYFDLPSNEIPSFMTLYFEDPDHQGHQVGPDDPQITEAVVNIDRLIGRLIDGLEKRGIFEDVTMIMVGDHGMVGTCDKKLVVLDDLAPWIKIPSSWVQYYTPLLAIQPPSGHDAADIVAKINEGLSSGKVENGKYLKVYLKEDLPSRLHYVDSDRIPPIIGLVDEGFKVEQKKSKAKECGGAHGYDNAFFSMRTIFIGHGPMFSKGRKVPSFENVQIYNVISSILGLKAAPNNGSDEFSSSILLPRV", "length": 496 }, "evidence": [ { "id": "A0A287ALD4", "url": "https://omabrowser.org/oma/group/A0A287ALD4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9UJA9-1", "protein_name": "Ectonucleotide pyrophosphatase/phosphodiesterase family member 5", "gene_name": "ENPP5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSKFLLVSFILAALSLSTTFSLQPDQQKVLLVSFDGFRWDYLYKVPTPHFHYIMKYGVHVKQVTNVFITKTYPNHYTLVTGLFAENHGIVANDMFDPIRNKSFSLDHMNIYDSKFWEEATPIWITNQRAGHTSGAAMWPGTDVKIHKRFPTHYMPYNESVSFEDRVAKIIEWFTSKEPINLGLLYWEDPDDMGHHLGPDSPLMGPVISDIDKKLGYLIQMLKKAKLWNTLNLIITSDHGMTQCSEERLIELDQYLDKDHYTLIDQSPVAAILPKEGKFDEVYEALTHAHPNLTVYKKEDVPERWHYKYNSRIQPIIAVADEGWHILQNKSDDFLLGNHGYDNALADMHPIFLAHGPAFRKNFSKEAMNSTDLYPLLCHLLNITAMPHNGSFWNVQDLLNSAMPRVVPYTQSTILLPGSVKPAEYDQEGSYPYFIGVSLGSIIVIVFFVIFIKHLIHSQIPALQDMHAEIAQPLLQA", "length": 477 }, "evidence": [ { "id": "A0A287ALD4", "url": "https://omabrowser.org/oma/group/A0A287ALD4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "NAD+ diphosphatase activity", "id": "GO:0000210", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000210", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALD4", "url": "https://www.uniprot.org/uniprotkb/A0A287ALD4" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALD4", "url": "https://www.uniprot.org/uniprotkb/A0A287ALD4" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALD4", "url": "https://www.uniprot.org/uniprotkb/A0A287ALD4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALD4", "url": "https://www.uniprot.org/uniprotkb/A0A287ALD4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { 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103 }, { "start_pos": 158, "end_pos": 160 }, { "start_pos": 292, "end_pos": 294 }, { "start_pos": 329, "end_pos": 331 }, { "start_pos": 362, "end_pos": 364 }, { "start_pos": 369, "end_pos": 371 }, { "start_pos": 382, "end_pos": 384 }, { "start_pos": 389, "end_pos": 391 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ALE0-1", "uniprot_ac": "A0A287ALE0", "uniprot_id": "A0A287ALE0_PIG", "mass": { "chemical_mass": 5717.0, "monoisotopic_mass": 5717.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A287ALE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ALE0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ALE0", "url": "https://www.uniprot.org/uniprotkb/A0A287ALE0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287ALE0", "locus": {} } ], "crossref": [ { "id": "A0A287ALE0", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ALE0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033084", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033084", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A287ALE0", "url": "https://www.uniprot.org/uniprotkb/A0A287ALE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALE0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VAWIWRTHCQGHPAPLPAGPLRGPGRRTPSVLLPTQIQTRRGGTDLKVNQHS", "length": 52, "header": "tr|A0A287ALE0-1|A0A287ALE0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287ALE0-1" }, "isoforms": [ { "isoform_ac": "A0A287ALE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALE0/entry#A0A287ALE0-1", "sequence": { "sequence": "VAWIWRTHCQGHPAPLPAGPLRGPGRRTPSVLLPTQIQTRRGGTDLKVNQHS", "length": 52, "header": "tr|A0A287ALE0-1|A0A287ALE0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287ALE0-1" }, "locus": { "chromosome": "3", "start_pos": 121544033, "end_pos": 121542964, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040192.2", "url": "https://www.ensembl.org/id/ENSSSCT00000040192.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044719.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044719.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALE0", "url": "https://www.uniprot.org/uniprotkb/A0A287ALE0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ALE0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 52, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ALE0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ALE0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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{ "sequence": "MPHLENIVLCRESQVSTLQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVFVNCVECFTLRLLLEKILNKLNHLSSSEDDCSAEITCETFNDFVRLFKQITKAENLKDQTVIFLSEIVWEKFRPNTGCFEPFVLYFPDYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAILNFPKYCEPVVKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDIDPGQLKGLSACTHVELPYYSKFILIAAYLASYNPARTDKRFFLKHHGKIKKTNFLKKHEKTSNHLLGPKPFPLDRLLAILYSIVDSRVAPTANIFSQITSLVTLQLLTLVGHDDQLDGPKYKCTVSLDFIRAVARTVNFDIIKYLYDFL", "length": 401, "header": "tr|A0A8D1ZMC1-1|A0A287ALL6_PIG Computationally mapped isoform of Origin recognition complex subunit 5 OS=Sus scrofa OX=9823 GN=ORC5 PE=3 SV=1 CANONICAL=A0A287ALL6-1" }, "locus": { "chromosome": "9", "start_pos": 104166389, "end_pos": 104084580, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078264.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078264.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071233.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071233.1" } ] } }, { "isoform_ac": 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"ENSSSCP00000016358.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016358.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5T4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5T4" } ], "reference": [ { "type": "PubMed", "id": "32543654", 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"keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALZ7", "url": "https://www.uniprot.org/uniprotkb/A0A287ALZ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular 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} ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AM15-1", "uniprot_ac": "A0A287AM15", "uniprot_id": "A0A287AM15_PIG", "mass": { "chemical_mass": 245510.0, "monoisotopic_mass": 245510.0 }, "refseq": {}, "gene_names": [ { "name": "SYTL2", "type": "recommended", "evidence": [ { "id": "A0A287AM15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15" } ] } ], "protein_names": [ { "name": "Synaptotagmin-like protein 2", "type": "recommended", "evidence": [ { "id": "A0A287AM15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AM15", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SYTL2", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15", "locus": { "chromosome": "9", "start_pos": 19617293, "end_pos": 19734633, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014909", "url": "https://www.ensembl.org/id/ENSSSCG00000014909" } ] } } ], "crossref": [ { "id": "A0A287AM15", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AM15", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014909", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014909", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04020", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04020", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08393", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08393", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627498", "url": "https://www.ncbi.nlm.nih.gov/gene/100627498", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010911", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010911", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041282", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041282", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043567", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043567", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1U888", "url": "https://www.orthodb.org/?gene=A0A4X1U888", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45716", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45716", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45716:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45716:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02318", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02318", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9824585", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9824585", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AM15", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AM15-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AXD8", "url": "https://www.uniprot.org/uniprotkb/A0A287AXD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AXD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AXD8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLX4", "url": "https://www.uniprot.org/uniprotkb/A0A287BLX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLX4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQZ9", "url": "https://www.uniprot.org/uniprotkb/A0A287BQZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U888", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U888", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U888-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U888-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH58", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH58-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH58-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STT2", "url": "https://www.uniprot.org/uniprotkb/F1STT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STT2-1", "url": "https://www.uniprot.org/uniprotkb/F1STT2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAKRHRDKIHGADIIRASMRKKRHQVAAEQSKDRENGAKESWVNNINKDAFPSPELSGVVQEPREDVAPTSPSSSAVNPASTVIDTSQENTRKSDASPAKQRKNPFNSSMLPEDHLSQQTKNEQSHNGRAGFFQTSEKGELSESKEKSSRPDISSQKLEKPEPTLPGPEKGSQIKPPIPKARRMMYKSPDLKQDDKQSLPRQRTDSLNTRGPPRGILKRNSSSSSTDSETVRFHQSFEPKSKIVSPGLTIHERISEKECSLEDDSSSNSLEPLKHVRFSALEDGHPQSPELVRGREVGEFGVLESDSLKNGTEDAGDADEFWKDPKPSQDRKPLPFQPPASSPSASKSDTHQPTTSGSFPVNEHHSPKEVLTARPQSTENPHTLGEHKANSSELLKLESTLSQNPADELSHTEPEPSQVPDHSSRDHQQGKPPPLKALKAKTSSRSGPYATEMRKTTDDSISKVLDWFNRSSHSEDSKSSLQHPRETEPKGETNSKSQIAVALETDDSSPKENGSKALLSTKVKLTPAVSDSAFQMEENMLPSENCQDHKVNVKPKSINLSQQGKEHPGILQPFEIYSPNQESKTVDYSQGSKNIEGTGVLPPTRHYSHSVHKGSHAEGQASCRIKDVDSLSEQEEPKLHVYEKNRGKSEVNFDSTAIAEEPSLKDNMKAERESKGRDTYNLKASLEPEKTELPPEVASNKSWKKPEVQLQEAGEVSQNQVQREKYKRVSDRISFWEGEKTAAKITHKEPTSSFSQERPSANAYPPVKSTNSLSTGHSKYNNQVTAKPVVLDKDGQAAHLSGFYSSHKPKETRPQVLGPSKNYPSADQPGQVSLFRNKTTEPVKRLPVPDHLHSGKDTTLPPLPHPSDVGSEIHTSLEKDRSQIDESNPNFKVMSLRERMDEPSTEQVYNHSQFENLRKFWDLGAQPNSQDTVEENTTTSGQKKSVPFNSQKHKEFSDIKSSGKNTHEREKTVPAREETEKLNSQSTLQVLPDETTFPLRPPRKSTHQLPGNESPKENMEKNTEPFVTPEFKEEKDYSDRKMQEIQESVVKTSVSSKDYKDTFNDSLQKLLSEASSPGIQASGGEVHEKQVLEPGVSEKRIWPPKTDSAAIEEEAKGLKEIIHEHIDKTVAPPRVKPNTLAASLDKLLKETPGTPPSPLHTKCELITTRISAESEEHREVAKGIEGNPNPSVYQREKVAPLPEGGETWGKTAPSQTARSGECPLKVASSFRVGAEGSRPLGQPPQCHRKGSCRDVANSPQDRPSFRDAQLAPQDEAFPSQREISETVEKIVIPPKPALADVRAALQKLFREACLSYPAEREVVSGVVNAEFPESVQVPGSPPDSLRVSPPWASVDTTVPERKNFCAFSVVPDKTQEAGSWSAAHMSPTEQTLSSSASTAARYGPELPQEVTESVRETVVQPKSELLEFSAGLEKLLKETIATPCSRHDSDPRALDSSELIGSTEVPRQAAPAFHPKEVKETIKKSEAPSKAEGAFDIGFEKLLKETSNSCSYQLPMSVKDETPEKELSQSRQARCLGKVPPFSWTASGASGMKLKSHASRSHVNQGGEELGRDKAVTDGSIDLCGSESGIEIPGTAQLSVDHATGTTEMINPPEDRDSEREVAVVQEGASQEPGFKEAPEAISLPRSEQPFFPLLTTAENSMKISKVELILASLYKRAGKHEEKEGISDSDFADGNISSNAESWRNTSSSEEEPSPVLKTLERSAARKMPSKSLEDISSDSSNQAKVDNLPEELVRSAEDVSTVPSQPDNQFSHPDKLKRMSKSVPAFLQDESDDRETDTASEGSYQLSRHKKSPSSLTNLSSSSGMTSLSSVSGSVMSVYSGDFGNLEVRGSIQFAIDYVDSLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYKIEKQILKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDNKQNKQLKWYPLKRKTAPVALEAENRGEMKLALQYVPEPMPGKKLPTTGEVHIWVKECLDLPLLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELTVWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLRMLLIAKISK", "length": 2213, "header": "tr|A0A287AM15-1|A0A287AM15_PIG Isoform 1 of Synaptotagmin-like protein 2 OS=Sus scrofa OX=9823 GN=SYTL2 PE=1 SV=3 CANONICAL=A0A287AM15-1" }, "isoforms": [ { "isoform_ac": "A0A287AM15-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15/entry#A0A287AM15-1", "sequence": { "sequence": "MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAKRHRDKIHGADIIRASMRKKRHQVAAEQSKDRENGAKESWVNNINKDAFPSPELSGVVQEPREDVAPTSPSSSAVNPASTVIDTSQENTRKSDASPAKQRKNPFNSSMLPEDHLSQQTKNEQSHNGRAGFFQTSEKGELSESKEKSSRPDISSQKLEKPEPTLPGPEKGSQIKPPIPKARRMMYKSPDLKQDDKQSLPRQRTDSLNTRGPPRGILKRNSSSSSTDSETVRFHQSFEPKSKIVSPGLTIHERISEKECSLEDDSSSNSLEPLKHVRFSALEDGHPQSPELVRGREVGEFGVLESDSLKNGTEDAGDADEFWKDPKPSQDRKPLPFQPPASSPSASKSDTHQPTTSGSFPVNEHHSPKEVLTARPQSTENPHTLGEHKANSSELLKLESTLSQNPADELSHTEPEPSQVPDHSSRDHQQGKPPPLKALKAKTSSRSGPYATEMRKTTDDSISKVLDWFNRSSHSEDSKSSLQHPRETEPKGETNSKSQIAVALETDDSSPKENGSKALLSTKVKLTPAVSDSAFQMEENMLPSENCQDHKVNVKPKSINLSQQGKEHPGILQPFEIYSPNQESKTVDYSQGSKNIEGTGVLPPTRHYSHSVHKGSHAEGQASCRIKDVDSLSEQEEPKLHVYEKNRGKSEVNFDSTAIAEEPSLKDNMKAERESKGRDTYNLKASLEPEKTELPPEVASNKSWKKPEVQLQEAGEVSQNQVQREKYKRVSDRISFWEGEKTAAKITHKEPTSSFSQERPSANAYPPVKSTNSLSTGHSKYNNQVTAKPVVLDKDGQAAHLSGFYSSHKPKETRPQVLGPSKNYPSADQPGQVSLFRNKTTEPVKRLPVPDHLHSGKDTTLPPLPHPSDVGSEIHTSLEKDRSQIDESNPNFKVMSLRERMDEPSTEQVYNHSQFENLRKFWDLGAQPNSQDTVEENTTTSGQKKSVPFNSQKHKEFSDIKSSGKNTHEREKTVPAREETEKLNSQSTLQVLPDETTFPLRPPRKSTHQLPGNESPKENMEKNTEPFVTPEFKEEKDYSDRKMQEIQESVVKTSVSSKDYKDTFNDSLQKLLSEASSPGIQASGGEVHEKQVLEPGVSEKRIWPPKTDSAAIEEEAKGLKEIIHEHIDKTVAPPRVKPNTLAASLDKLLKETPGTPPSPLHTKCELITTRISAESEEHREVAKGIEGNPNPSVYQREKVAPLPEGGETWGKTAPSQTARSGECPLKVASSFRVGAEGSRPLGQPPQCHRKGSCRDVANSPQDRPSFRDAQLAPQDEAFPSQREISETVEKIVIPPKPALADVRAALQKLFREACLSYPAEREVVSGVVNAEFPESVQVPGSPPDSLRVSPPWASVDTTVPERKNFCAFSVVPDKTQEAGSWSAAHMSPTEQTLSSSASTAARYGPELPQEVTESVRETVVQPKSELLEFSAGLEKLLKETIATPCSRHDSDPRALDSSELIGSTEVPRQAAPAFHPKEVKETIKKSEAPSKAEGAFDIGFEKLLKETSNSCSYQLPMSVKDETPEKELSQSRQARCLGKVPPFSWTASGASGMKLKSHASRSHVNQGGEELGRDKAVTDGSIDLCGSESGIEIPGTAQLSVDHATGTTEMINPPEDRDSEREVAVVQEGASQEPGFKEAPEAISLPRSEQPFFPLLTTAENSMKISKVELILASLYKRAGKHEEKEGISDSDFADGNISSNAESWRNTSSSEEEPSPVLKTLERSAARKMPSKSLEDISSDSSNQAKVDNLPEELVRSAEDVSTVPSQPDNQFSHPDKLKRMSKSVPAFLQDESDDRETDTASEGSYQLSRHKKSPSSLTNLSSSSGMTSLSSVSGSVMSVYSGDFGNLEVRGSIQFAIDYVDSLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYKIEKQILKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDNKQNKQLKWYPLKRKTAPVALEAENRGEMKLALQYVPEPMPGKKLPTTGEVHIWVKECLDLPLLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELTVWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLRMLLIAKISK", "length": 2213, "header": "tr|A0A287AM15-1|A0A287AM15_PIG Isoform 1 of Synaptotagmin-like protein 2 OS=Sus scrofa OX=9823 GN=SYTL2 PE=1 SV=3 CANONICAL=A0A287AM15-1" }, "locus": { "chromosome": "9", "start_pos": 19689844, "end_pos": 19618369, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058162.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058162.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045051.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045051.3" } ] } }, { "isoform_ac": "A0A287AXD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15/entry#A0A287AXD8-1", "sequence": { "sequence": "MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAKRHRDKIHGADIIRASMRKKRHQVAAEQSKDRENGAKESWVNNINKDAFPSPELSGVVQEPREDVAPTSPSSSAVNPASTVIDTSQENTRKSDASPAKQRKNPFNSSMLPEDHLSQQTKNEQSHNGRAGFFQTSEKESKEKSSRPDISSQKLEKPEPTLPGPEKGSQIKPPIPKARRMMYKSPDLKQDDKQSLPRQRTDSLNTRGPPRGILKRNSSSSSTDSETVRFHQSFEPKSKIVSPGLTIHERISEKECSLEDDSSSNSLEPLKHVRFSALEDGHPQSPELVRGREVGEFGVLESDSLKNGTEDAGDADEFWKDPKPSQDRKPLPFQPPASSPSASKSDTHQPTTSGSFPVNEHHSPKEVLTARPQSTENPHTLGEHKANSSELLKLESTLSQNPAGSEEEPSPVLKTLERSAARKMPSKSLEDISSDSSNQAKVDNLPEELVRSAEDDQKADQEPDTNECIPGISTVPSQPDNQFSHPDKLKRMSKSVPAFLQDEVSGSVMSVYSGDFGNLEVRGSIQFAIDYVDSLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYKIEKQILKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDNKQNKQLKWYPLKRKTAPVALEAENRGEMKLALQYVPEPMPGKKLPTTGEVHIWVKECLDLPLLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELTVWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLRMLLIAKISK", "length": 883, "header": "tr|A0A287AXD8-1|A0A287AXD8_PIG Computationally mapped isoform of Synaptotagmin-like protein 2 OS=Sus scrofa OX=9823 GN=SYTL2 PE=1 SV=1 CANONICAL=A0A287AM15-1" }, "locus": { "chromosome": "9", "start_pos": 19689844, "end_pos": 19618369, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059590.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059590.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048812.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048812.2" } ] } }, { "isoform_ac": "A0A287BLX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15/entry#A0A287BLX4-1", "sequence": { "sequence": "MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAKRHRDKIHGADIIRASMRKKRHQVAAEQSKDRENGAKESWVNNINKDAFPSPELSGVVQEPREDVAPTSPSSSAVNPASTVIDTSQENTRKSDASPAKQRKNPFNSSMLPEDHLSQQTKNEQSHNGRAGFFQTSEKESKEKSSRPDISSQKLEKPEPTLPGPEKGSQIKPPIPKARRMMYKSPDLKQDDKQSLPRQRTDSLNTRGPPRGILKRNSSSSSTDSETVRFHQSFEPKSKIVSPGLTIHERISEKECSLEDDSSSNSLEPLKHVRFSALEDGHPQSPELVRGREVGEFGVLESDSLKNGTEDAGDADEFWKDPKPSQDRKPLPFQPPASSPSASKSDTHQPTTSGSFPVNEHHSPKEVLTARPQSTENPHTLGEHKANSSELLKLESTLSQNPAVDQKADQEPDTNECIPGISTVPSQPDNQFSHPDKLKRMSKSVPAFLQDEVSGSVMSVYSGDFGNLEVRGSIQFAIDYVDSLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYKIEKQILKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDNKQNKQLKWYPLKRKTAPVALEAENRGEMKLALQYVPEPMPGKKLPTTGEVHIWVKECLDLPLLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELTVWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLRMLLIAKISK", "length": 832, "header": "tr|A0A287BLX4-1|A0A287BLX4_PIG Computationally mapped isoform of Synaptotagmin-like protein 2 OS=Sus scrofa OX=9823 GN=SYTL2 PE=1 SV=2 CANONICAL=A0A287AM15-1" }, "locus": { "chromosome": "9", "start_pos": 19689844, "end_pos": 19618369, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061373.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061373.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057620.3", "url": "https://www.ensembl.org/id/ENSSSCP00000057620.3" } ] } }, { "isoform_ac": "A0A287BQZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15/entry#A0A287BQZ9-1", "sequence": { "sequence": "MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAKRHRDKIHGADIIRASMRKKRHQVAAEQSKDRENGAKESWVNNINKDAFPSPELSGVVQEPREDVAPTSPSSSAVNPASTVIDTSQENTRKSDASPAKQRKNPFNSSMLPEDHLSQQTKNEQSHNGRAGFFQTSEKESKEKSSRPDISSQKLEKPEPTLPGPEKGSQIKPPIPKARRMMYKSPDLKQDDKQSLPRQRTDSLNTRGPPRGILKRNSSSSSTDSETVRFHQSFEPKSKIVSPGLTIHERISEKECSLEDDSSSNSLEPLKHVRFSALEDGHPQSPELVRGREVGEFGVLESDSLKNGTEDAGDADEFWKDPKPSQDRKPLPFQPPASSPSASKSDTHQPTTSGSFPVNEHHSPKEVLTARPQSTENPHTLGEHKANSSELLKLESTLSQNPADQAKVDNLPEELVRSAEDDQKADQEPDTNECIPGISTVPSQPDNQFSHPDKLKRMSKSVPAFLQDEVSGSVMSVYSGDFGNLEVRGSIQFAIDYVDSLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYKIEKQILKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDNKQNKQLKWYPLKRKTAPVALEAENRGEMKLALQYVPEPMPGKKLPTTGEVHIWVKECLDLPLLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELTVWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLRMLLIAKISK", "length": 849, "header": "tr|A0A287BQZ9-1|A0A287BQZ9_PIG Computationally mapped isoform of Synaptotagmin-like protein 2 OS=Sus scrofa OX=9823 GN=SYTL2 PE=1 SV=1 CANONICAL=A0A287AM15-1" }, "locus": { "chromosome": "9", "start_pos": 19689844, "end_pos": 19618369, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059857.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059857.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058543.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058543.2" } ] } }, { "isoform_ac": "A0A4X1U888-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15/entry#A0A4X1U888-1", "sequence": { "sequence": "MSDDRETDTASEGSYQLSRHKKSPSSLTNLSSSSGMTSLSSVSGSVMSVYSGDFGNLEVRGSIQFAIDYVDSLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYKIEKQILKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDNKQNKQLKWYPLKRKTAPVALEAENRGEMKLALQYVPEPMPGKKLPTTGEVHIWVKECLDLPLLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELTVWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLRMLLIAKISK", "length": 365, "header": "tr|A0A4X1U888-1|A0A4X1U888_PIG Computationally mapped isoform of Synaptotagmin-like protein 2 OS=Sus scrofa OX=9823 GN=SYTL2 PE=1 SV=1 CANONICAL=A0A287AM15-1" }, "locus": { "chromosome": "9", "start_pos": 19641249, "end_pos": 19618369, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102172.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102172.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080261.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080261.1" } ] } }, { "isoform_ac": "A0A8W4FH58-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15/entry#A0A8W4FH58-1", "sequence": { "sequence": "MNCLTLSLSLLRCQITVLETISKEMRKTTDDSISKVLDWFNRSSHSEDSKSSLQHPRETEPKGETNSKSQIAVALETDDSSPKENGSKALLSTKVKLTPAVSDSAFQMEENMLPSENCQDHKVNVKPKSINLSQQGKEHPGILQPFEIYSPNQESKTVDYSQGSKNIEGTGVLPPTRHYSHSVHKGSHAEGQASCRIKDVDSLSEQEEPKLHVYEKNRGKSEVNFDSTAIAEEPSLKDNMKAERESKGRDTYNLKASLEPEKTELPPEVASNKSWKKPEVQLQEAGEVSQNQVQREKYKRVSDRISFWEGEKTAAKITHKEPTSSFSQERPSANAYPPVKSTNSLSTGHSKYNNQVTAKPVVLDKDGQAAHLSGFYSSHKPKETRPQVLGPSKNYPSADQPGQVSLFRNKTTEPVKRLPVPDHLHSGKDTTLPPLPHPSDVGSEIHTSLEKDRSQIDESNPNFKVMSLRERMDEPSTEQVYNHSQFENLRKFWDLGAQPNSQDTVEENTTTSGQKKSVPFNSQKHKEFSDIKSSGKNTHEREKTVPAREETEKLNSQSTLQVLPDETTFPLRPPRKSTHQLPGNESPKENMEKNTEPFVTPEFKEEKDYSDRKMQEIQESVVKTSVSSKDYKDTFNDSLQKLLSEASSPGIQASGGEVHEKQVLEPGVSEKRIWPPKTDSAAIEEEAKGLKEIIHEHIDKTVAPPRVKPNTLAASLDKLLKETPGTPPSPLHTKCELITTRISAESEEHREVAKGIEGNPNPSVYQREKVAPLPEGGETWGKTAPSQTARSGSEEEPSPVLKTLERSAARKMPSKSLEDISSDSSNQAKVDNLPEELVRSAEDVSTVPSQPDNQFSHPDKLKRMSKSVPAFLQDESDDRETDTASEGSYQLSRHKKSPSSLTNLSSSSGMTSLSSVSGSVMSVYSGDFGNLEVRGSIQFAIDYVDSLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYKIEKQILKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDNKQNKQLKWYPLKRKTAPVALEAENRGEMKLALQYVPEPMPGKKLPTTGEVHIWVKECLDLPLLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELTVWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLRMLLIAKISK", "length": 1239, "header": "tr|A0A8W4FH58-1|A0A287AM15_PIG Computationally mapped isoform of Synaptotagmin-like protein 2 OS=Sus scrofa OX=9823 GN=SYTL2 PE=1 SV=1 CANONICAL=A0A287AM15-1" }, "locus": { "chromosome": "9", "start_pos": 19650290, "end_pos": 19618369, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104675.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104675.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077645.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077645.1" } ] } }, { "isoform_ac": "F1STT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15/entry#F1STT2-1", "sequence": { "sequence": "MIDLSFLTEEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAKRHRDKIHGADIIRASMRKKRHQVAAEQSKDRENGAKESWVNNINKDAFPSPELSGVVQEPREDVAPTSPSSSAVNPASTVIDTSQENTRKSDASPAKQRKNPFNSSMLPEDHLSQQTKNEQSHNGRAGFFQTSEKESKEKSSRPDISSQKLEKPEPTLPGPEKGSQIKPPIPKARRMMYKSPDLKQDDKQSLPRQRTDSLNTRGPPRGILKRNSSSSSTDSETVRFHQSFEPKSKIVSPGLTIHERISEKECSLEDDSSSNSLEPLKHVRFSALEDGHPQSPELVRGREVGEFGVLESDSLKNGTEDAGDADEFWKDPKPSQDRKPLPFQPPASSPSASKSDTHQPTTSGSFPVNEHHSPKEVLTARPQSTENPHTLGEHKANSSELLKLESTLSQNPADELSHTEPEPSQVPDHSSRDHQQGSEEEPSPVLKTLERSAARKMPSKSLEDISSDSSNQAKVDNLPEELVRSAEDDQKADQEPDTNECIPGISTVPSQPDNQFSHPDKLKRMSKSVPAFLQDEVSGSVMSVYSGDFGNLEVRGSIQFAIDYVDSLKELHVFVAQCKDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYKIEKQILKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDNKQNKQLKWYPLKRKTAPVALEAENRGEMKLALQYVPEPMPGKKLPTTGEVHIWVKECLDLPLLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRPEDLTEACVELTVWDHYKLTNQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLRMLLIAKISK", "length": 906, "header": "tr|F1STT2-1|F1STT2_PIG Computationally mapped isoform of Synaptotagmin-like protein 2 OS=Sus scrofa OX=9823 GN=SYTL2 PE=1 SV=3 CANONICAL=A0A287AM15-1" }, "locus": { "chromosome": "9", "start_pos": 19689844, "end_pos": 19618369, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016265.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016265.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015831.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015831.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 127, "start_aa": "Thr", "end_pos": 127, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr127", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FH58", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH58" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9824585", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9824585", "resource": "Reactome", "description": "Regulation of MITF-M-dependent genes involved in pigmentation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM15", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15" } ], "pmid": "" }, { "name": "exocytic vesicle", "id": "GO:0070382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070382", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM15", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM15", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM15", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15" } ], "pmid": "" }, { "name": "exocytosis", "id": "GO:0006887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006887", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM15", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM15", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15" } ], "pmid": "" }, { "name": "neurexin family protein binding", "id": "GO:0042043", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042043", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM15", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1069, "end_pos": 1071, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1121, "end_pos": 1123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1753, "end_pos": 1755, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1763, "end_pos": 1765, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1877, "end_pos": 1879, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1994, "end_pos": 1996, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2123, "end_pos": 2125, "annotation": "n_glycosylation_sequon" }, { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 367, "end_pos": 369, "annotation": 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"AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AM15-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AM15" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AM15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 1907, "end_pos": 2032, "start_aa": "Val", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AM15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AM15" }, { "id": "PS50916", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50916" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RabBD", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 57, "start_aa": 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"InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043544", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043544", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A287AM31", "url": "https://www.orthodb.org/?gene=A0A287AM31", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46209", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46209", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46209:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46209:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00787", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00787", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020922760", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922760", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AM31", "url": "https://www.uniprot.org/uniprotkb/A0A287AM31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AM31-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKNFQGFALAERSKGGSQLTVIDPVSLPFARCFLPMGFWCRMLENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGSSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRSPMSVSDAILRYAMSNCGWAQEERRGSSHLAKGDQPKSCCFLPRSGRRRSSSPPPGEEKDHFEVWAPVVDSEAPSLESPPLPPPSSPSCCGFARPDEKISAPPPVGRAVGGDPAVPSDPGQLETVLEK", "length": 305, "header": "tr|A0A287AM31-1|A0A287AM31_PIG Isoform 1 of Sorting nexin 11 OS=Sus scrofa OX=9823 GN=SNX11 PE=3 SV=1 CANONICAL=A0A287AM31-1" }, "isoforms": [ { "isoform_ac": "A0A287AM31-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM31/entry#A0A287AM31-1", "sequence": { "sequence": "MKNFQGFALAERSKGGSQLTVIDPVSLPFARCFLPMGFWCRMLENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGSSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRSPMSVSDAILRYAMSNCGWAQEERRGSSHLAKGDQPKSCCFLPRSGRRRSSSPPPGEEKDHFEVWAPVVDSEAPSLESPPLPPPSSPSCCGFARPDEKISAPPPVGRAVGGDPAVPSDPGQLETVLEK", "length": 305, "header": "tr|A0A287AM31-1|A0A287AM31_PIG Isoform 1 of Sorting nexin 11 OS=Sus scrofa OX=9823 GN=SNX11 PE=3 SV=1 CANONICAL=A0A287AM31-1" }, "locus": { "chromosome": "12", "start_pos": 24359691, "end_pos": 24354478, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056369.2", "url": "https://www.ensembl.org/id/ENSSSCT00000056369.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044970.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044970.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM31", "url": "https://www.uniprot.org/uniprotkb/A0A287AM31" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM31", "url": "https://www.uniprot.org/uniprotkb/A0A287AM31" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM31", "url": "https://www.uniprot.org/uniprotkb/A0A287AM31" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM31", "url": "https://www.uniprot.org/uniprotkb/A0A287AM31" } ], "pmid": "" }, { "name": "vesicle organization", "id": "GO:0016050", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016050", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM31", "url": "https://www.uniprot.org/uniprotkb/A0A287AM31" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatidylinositol phosphate binding", "id": "GO:1901981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901981", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM31", "url": "https://www.uniprot.org/uniprotkb/A0A287AM31" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AM31-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 305, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AM31-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AM31" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AM31", "database": 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Classification" ] }, { "id": "IPR042635", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042635", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052080", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052080", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24035", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24035", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24035:SF138", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24035:SF138", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24043", "url": 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"length": 994, "header": "tr|A0A287AM38-1|A0A287AM38_PIG Isoform 1 of EGF like and EMI domain containing 1 OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=A0A287AM38-1" }, "isoforms": [ { "isoform_ac": "A0A287AM38-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM38/entry#A0A287AM38-1", "sequence": { "sequence": 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"length": 994, "header": "tr|A0A287AM38-1|A0A287AM38_PIG Isoform 1 of EGF like and EMI domain containing 1 OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=A0A287AM38-1" }, "locus": { "chromosome": "13", "start_pos": 107596037, "end_pos": 107388348, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057851.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057851.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044974.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044974.3" } ] } }, { "isoform_ac": "A0A287BDU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM38/entry#A0A287BDU6-1", "sequence": { "sequence": "NTLGTFHCECDTGYRLHADERTCIKMDPCTGGNGCVHICQNENGVARCACHPGFQLSEDKKACVDINECAEGLAPCSHHCVNTVGSFTCGCHPGFELGADGKQCYRIELEIVNSCEKNNGGCSHHCEHAVGGPRCSCNHGHRLDSDEKTCIDLDECESGEACCTQLCINYLGGYECSCREGFRISSDGCTCDDVDECLEVNIVCDQLCINSVGTYECTCEEGYRIGSDGKTCISHNCSLSCEDCMNGGRCQEGDSRCSCPVGWGDILCNEITCSPETSGTECNSICDCQNGGTCDPLTGQCQCPLGVHGKTCGNGCPKGFFGNNCKRKCNCANNGHCHRVYGACMCEPGRYGRFCHLNCPKGSYGAGCSSECQCVEENTLECSLSQTHTHPHSHPYIHMHFTNSLRQQRKSGTALRFITSLSSFLSLFILQACPDGLWGPECQFSCGPCKNGGWCNKKTGNCDCLPGYMGKACTKGNLFPQPRLHPLSHDTSQWDFDTSQCICQSSWTEPTDRCCQSEAECKSCSSSNINNAYIYTDKFNSLGLHFLFPLVCPPGTYGKDCKQVCQCSAENEECHPVTGRCTCLPGYHGNRCHLRCPKGTYGPYCQKKCKCLNSGSCDTMIGTCDCPPGFIGADCTCPKDHYGQDCVQRCSCGSGQCDPVTGGCQCPPGQMGARCQQGCPQTRYGPNCELKCTCKNGGLCDPVDGSCTCTLGWTGNDCEKECFPGYYGPGCHFNCTCQNNGVCNRFSGSCECLPGYYGRDCEHACLPGFYGLNCAHICDCKNGANCDAESGQCICPAGVHGSQCEKGICSPGMFGDNCRQLCDCEKASLCHPVTGKCLCPPGRTGARCDAECRSGQYGPNCSLKCQCVHTAHCNPLNGSCSCPARRIGPTCEENSLDNPQMFSGVLPIIGQQTGRKSYQGKCLTCSGGNLCPRFSQKVGPDWNEAFNSHCN", "length": 951, "header": "tr|A0A287BDU6-1|A0A287BDU6_PIG Computationally mapped isoform of EGF like and EMI domain containing 1 OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287AM38-1" }, "locus": { "chromosome": "13", "start_pos": 107596667, "end_pos": 107443460, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064880.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064880.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054713.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054713.2" } ] } }, { "isoform_ac": "A0A8W4FDH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM38/entry#A0A8W4FDH4-1", "sequence": { "sequence": "DSVPLCWCFCFVREPLKTLCVSSYRELILFKYSFADINECTTDNGGCQNQCCNTIGSYYCKCQAGQKLEKDGRGCEDVDECAVVNGGCQQRCINTLGTFHCECDTGYRLHADERTCIKMDPCTGGNGCVHICQNENGVARCACHPGFQLSEDKKACVDINECAEGLAPCSHHCVNTVGSFTCGCHPGFELGADGKQCYRIELEIVNSCEKNNGGCSHHCEHAVGGPRCSCNHGHRLDSDEKTCIDLDECESGEACCTQLCINYLGGYECSCREGFRISSDGCTCDALDDDELEEEEELDIVRFPGLLFKSAPQLLHYGATSLPLTQEEEDDEEEEGEDIRGESTALHRVAHNCSLSCEDCMNGGRCQEGDSRCSCPVGWGDILCNEISDTLKRW", "length": 394, "header": "tr|A0A8W4FDH4-1|A0A287AM38_PIG Computationally mapped isoform of EGF like and EMI domain containing 1 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A287AM38-1" }, "locus": { "chromosome": "13", "start_pos": 107501045, "end_pos": 107388253, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094631.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094631.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076909.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076909.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 975, "start_aa": "Thr", "end_pos": 975, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr975", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FDH4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDH4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "scavenger receptor activity", "id": "GO:0005044", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005044", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM38", "url": "https://www.uniprot.org/uniprotkb/A0A287AM38" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM38", "url": "https://www.uniprot.org/uniprotkb/A0A287AM38" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM38", "url": "https://www.uniprot.org/uniprotkb/A0A287AM38" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM38", "url": "https://www.uniprot.org/uniprotkb/A0A287AM38" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 374, "end_pos": 376, "annotation": "n_glycosylation_sequon" }, { "start_pos": 819, "end_pos": 821, "annotation": "n_glycosylation_sequon" }, { "start_pos": 945, "end_pos": 947, "annotation": "n_glycosylation_sequon" }, { "start_pos": 962, "end_pos": 964, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AM38-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 994, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AM38-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AM38" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AM38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AM38" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 132, "start_aa": "Asp", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 975 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 374, "end_pos": 376 }, { "start_pos": 819, "end_pos": 821 }, { "start_pos": 945, "end_pos": 947 }, { "start_pos": 962, "end_pos": 964 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AM44-1", "uniprot_ac": "A0A287AM44", "uniprot_id": "A0A287AM44_PIG", "mass": { "chemical_mass": 39874.0, "monoisotopic_mass": 39874.0 }, "refseq": { "ac": "XP_020933017", "name": "protein NDRG3 isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933017" }, "gene_names": [ { "name": "NDRG3", "type": "recommended", "evidence": [ { "id": "A0A287AM44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44" } ] }, { "name": "NDRG3", "type": "synonym", "evidence": [ { "id": "XP_020933017", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933017" } ] } ], "protein_names": [ { "name": "Protein NDRG2", "type": "recommended", "evidence": [ { "id": "A0A287AM44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44/entry#names_and_taxonomy" } ] }, { "name": "protein NDRG3 isoform X6", "type": "synonym", "evidence": [ { "id": "XP_020933017", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933017" } ] } ], "function": [ { "annotation": "Contributes to the regulation of the Wnt signaling pathway. Down-regulates CTNNB1-mediated transcriptional activation of target genes. May be involved in neuron differentiation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM44", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44#function" }, { "database": "UniProtKB", "id": "RU367129", "url": "https://www.uniprot.org/uniprotkb/RU367129#function" }, { "database": "UniProtKB", "id": "A0A4X1TEL3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TEL3#function" }, { "database": "UniProtKB", "id": "F1S479", "url": "https://www.uniprot.org/uniprotkb/F1S479#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AM44", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NDRG3", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44", "locus": { "chromosome": "17", "start_pos": 39905958, "end_pos": 39969659, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007322", "url": "https://www.ensembl.org/id/ENSSSCG00000007322" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007322", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007322", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100620657", "url": "https://www.ncbi.nlm.nih.gov/gene/100620657", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004142", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004142", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LQGEGYC", "url": "https://omabrowser.org/oma/group/LQGEGYC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11034", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11034", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020933017", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933017", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AM44", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AM44-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWJ9", "url": "https://www.uniprot.org/uniprotkb/A0A287AWJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGC9", "url": "https://www.uniprot.org/uniprotkb/A0A287BGC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGC9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TEL3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TEL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TEL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TEL3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TIQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TIQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S479", "url": "https://www.uniprot.org/uniprotkb/F1S479", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S479-1", "url": "https://www.uniprot.org/uniprotkb/F1S479-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDELQDVQLTEIKPLLNDKEHDIETTHGVVHVTIRGLPKGNRPVIMTYHDIGLNHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPSGYQYPTMDELAEMLPSVLTHLNLKSIIGVGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGLTTNVVDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLSSYNGRKDLEIERPILGQNDNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPVNTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPSASMTRLARSRTHSTSSSIGSGESAFSRSVTSNQSDGTQESSESPDVLDRHQTMEVSC", "length": 363, "header": "tr|A0A287AM44-1|A0A287AM44_PIG Isoform 1 of Protein NDRG2 OS=Sus scrofa OX=9823 GN=NDRG3 PE=1 SV=1 CANONICAL=A0A287AM44-1" }, "isoforms": [ { "isoform_ac": "A0A287AM44-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44/entry#A0A287AM44-1", "sequence": { "sequence": "MDELQDVQLTEIKPLLNDKEHDIETTHGVVHVTIRGLPKGNRPVIMTYHDIGLNHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPSGYQYPTMDELAEMLPSVLTHLNLKSIIGVGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGLTTNVVDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLSSYNGRKDLEIERPILGQNDNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPVNTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPSASMTRLARSRTHSTSSSIGSGESAFSRSVTSNQSDGTQESSESPDVLDRHQTMEVSC", "length": 363, "header": "tr|A0A287AM44-1|A0A287AM44_PIG Isoform 1 of Protein NDRG2 OS=Sus scrofa OX=9823 GN=NDRG3 PE=1 SV=1 CANONICAL=A0A287AM44-1" }, "locus": { "chromosome": "17", "start_pos": 39969614, "end_pos": 39907390, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042701.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042701.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044958.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044958.1" } ] } }, { "isoform_ac": "A0A287AWJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44/entry#A0A287AWJ9-1", "sequence": { "sequence": "MAQQLRTWHCHYKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPSGYQYPTMDELAEMLPSVLTHLNLKSIIGVGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGLTTNVVDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLSSYNGRKDLEIERPILGQNDNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPVNTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPSASMTRLARSRTHSTSSSIGSGESAFSRSVTSNQSDGTQESSESPDVLDRHQTMEVSC", "length": 320, "header": "tr|A0A287AWJ9-1|A0A287AWJ9_PIG Computationally mapped isoform of NDRG family member 3 OS=Sus scrofa OX=9823 GN=NDRG3 PE=1 SV=2 CANONICAL=A0A287AM44-1" }, "locus": { "chromosome": "17", "start_pos": 39944468, "end_pos": 39907390, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038533.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038533.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048513.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048513.2" } ] } }, { "isoform_ac": "A0A287BGC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44/entry#A0A287BGC9-1", "sequence": { "sequence": "MIRMVHETSRTLTVRYQYPTMDELAEMLPSVLTHLNLKSIIGVGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGLTTNVVDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLSSYNGRKDLEIERPILGQNDNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPVNTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPSASMTRLARSRTHSTSSSIGSGESAFSRSVTSNQSDGTQESSESPDVLDRHQTMEVSC", "length": 283, "header": "tr|A0A287BGC9-1|A0A287BGC9_PIG Computationally mapped isoform of NDRG family member 3 OS=Sus scrofa OX=9823 GN=NDRG3 PE=1 SV=3 CANONICAL=A0A287AM44-1" }, "locus": { "chromosome": "17", "start_pos": 39969565, "end_pos": 39907390, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053725.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053725.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055587.3", "url": "https://www.ensembl.org/id/ENSSSCP00000055587.3" } ] } }, { "isoform_ac": "A0A4X1TEL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44/entry#A0A4X1TEL3-1", "sequence": { "sequence": "MDELQDVQLTEIKPLLNDKNGTRNFQDFDCQEHDIETTHGVVHVTIRGLPKGNRPVIMTYHDIGLNHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPSGYQYPTMDELAEMLPSVLTHLNLKSIIGVGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKEELQANLDLIQTYRLHIAQDINQENLQLFLSSYNGRKDLEIERPILGQNDNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPVNTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPSASMTRLARSRTHSTSSSIGSGESAFSRSVTSNQSDGTQESSESPDVLDRHQTMEVSC", "length": 356, "header": "tr|A0A4X1TEL3-1|A0A4X1TEL3_PIG Computationally mapped isoform of Protein NDRG2 OS=Sus scrofa OX=9823 GN=NDRG3 PE=1 SV=1 CANONICAL=A0A287AM44-1" }, "locus": { "chromosome": "17", "start_pos": 39969614, "end_pos": 39907390, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038712.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038712.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037833.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037833.2" } ] } }, { "isoform_ac": "A0A4X1TIQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44/entry#A0A4X1TIQ8-1", "sequence": { "sequence": "MDELQDVQLTEIKPLLNDKNGTRNFQDFDCQEHDIETTHGVVHVTIRGLPKGNRPVIMTYHDIGLNHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPSGYQYPTMDELAEMLPSVLTHLNLKSIIGVGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGLTTNVVDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLSSYNGRKDLEIERPILGQNDNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPVNTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPSASMTRLARSRTHSTSSSIGSGESAFSRSVTSNQSDGTQESSESPDVLDRHQTMEVSC", "length": 375, "header": "tr|A0A4X1TIQ8-1|A0A4X1TIQ8_PIG Computationally mapped isoform of NDRG family member 3 OS=Sus scrofa OX=9823 GN=NDRG3 PE=1 SV=1 CANONICAL=A0A287AM44-1" }, "locus": { "chromosome": "17", "start_pos": 39969614, "end_pos": 39907390, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069483.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069483.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073601.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073601.2" } ] } }, { "isoform_ac": "A0A5G2QIY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44/entry#A0A5G2QIY3-1", "sequence": { "sequence": "RNAFCKLTSLLLFSREKPSREWNILVPVTDHQGRMPTWHGPNAHLNPEHDIETTHGVVHVTIRGLPKGNRPVIMTYHDIGLNHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPSGYQYPTMDELAEMLPSVLTHLNLKSIIGVGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGLTTNVVDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLSSYNGRKDLEIERPILGQNDNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPVNTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPYVQLSHLSTESVPSASMTRLARSRTHSTSSSIGSGESAFSRSVTSNQSDGTQESSESPDVLDRHQTMEVSC", "length": 404, "header": "tr|A0A5G2QIY3-1|A0A287AM44_PIG Computationally mapped isoform of Protein NDRG2 OS=Sus scrofa OX=9823 GN=NDRG3 PE=1 SV=1 CANONICAL=A0A287AM44-1" }, "locus": { "chromosome": "17", "start_pos": 39946567, "end_pos": 39907390, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087921.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087921.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064411.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064411.2" } ] } }, { "isoform_ac": "F1S479-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44/entry#F1S479-1", "sequence": { "sequence": "MPTWHGPNAHLNPEHDIETTHGVVHVTIRGLPKGNRPVIMTYHDIGLNHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPSGYQYPTMDELAEMLPSVLTHLNLKSIIGVGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGLTTNVVDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLSSYNGRKDLEIERPILGQNDNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPVNTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPSASMTRLARSRTHSTSSSIGSGESAFSRSVTSNQSDGTQESSESPDVLDRHQTMEVSC", "length": 357, "header": "tr|F1S479-1|A0A287AM44_PIG Computationally mapped isoform of Protein NDRG2 OS=Sus scrofa OX=9823 GN=NDRG3 PE=1 SV=5 CANONICAL=A0A287AM44-1" }, "locus": { "chromosome": "17", "start_pos": 39946465, "end_pos": 39907390, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008012.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008012.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007798.5", "url": "https://www.ensembl.org/id/ENSSSCP00000007798.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM44", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM44", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM44", "url": "https://www.uniprot.org/uniprotkb/A0A287AM44" } ], "pmid": "" }, { "name": "Wnt 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"uniprot_ac": "A0A287AM63", "uniprot_id": "A0A287AM63_PIG", "mass": { "chemical_mass": 54689.0, "monoisotopic_mass": 54689.0 }, "refseq": {}, "gene_names": [ { "name": "RGS7", "type": "recommended", "evidence": [ { "id": "A0A287AM63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63" } ] } ], "protein_names": [ { "name": "Regulator of G protein signaling 7", "type": "synonym", "evidence": [ { "id": "A0A287AM63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AM63", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RGS7", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63", "locus": { "chromosome": "10", "start_pos": 11950901, "end_pos": 12322359, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010840", "url": "https://www.ensembl.org/id/ENSSSCG00000010840" } ] } } ], "crossref": [ { "id": "A0A287AM63", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AM63", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010840", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010840", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00068", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00068", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04450", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04450", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08738", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08738", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521858", "url": "https://www.ncbi.nlm.nih.gov/gene/100521858", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016137", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016137", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036284", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036284", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040759", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040759", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047016", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047016", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047017", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047017", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YVEYDPC", "url": "https://omabrowser.org/oma/group/YVEYDPC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45746", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45746", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45746:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45746:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00610", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00610", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00615", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00615", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00631", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00631", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18148", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18148", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6814122", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6814122", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AM63", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AM63-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHJ5", "url": "https://www.uniprot.org/uniprotkb/A0A287BHJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TKJ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TKJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TKJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TKJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1ABU7", "url": "https://www.uniprot.org/uniprotkb/A0A8D1ABU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1ABU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1ABU7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FII0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FII0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FII0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FII0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8X9AEW5", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AEW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8X9AEW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AEW5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9G4", "url": "https://www.uniprot.org/uniprotkb/F1S9G4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9G4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9G4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQGNNYGQTSNGVADESPNMLVYRKMEDVIARMQDEKNGIPIRTVKSFLSKIPSVFSGSDIVQWLIKNLTIEDPVEALHLGTLMSAHGYFFPISDHVLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVPGCVNTTEVDIKKSSRMRNPHKTRKSVYGLQNDIRSHSPTHTPTPESKPATEDELQQQIKYWQIQLDRHRLKMSKVADSLLSYTEQYVEYDPFLVPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKGKSLTSKRLTSLVQSY", "length": 469, "header": "tr|A0A287AM63-1|A0A287AM63_PIG Isoform 1 of Regulator of G protein signaling 7 OS=Sus scrofa OX=9823 GN=RGS7 PE=1 SV=3 CANONICAL=A0A287AM63-1" }, "isoforms": [ { "isoform_ac": "A0A287AM63-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63/entry#A0A287AM63-1", "sequence": { "sequence": "MAQGNNYGQTSNGVADESPNMLVYRKMEDVIARMQDEKNGIPIRTVKSFLSKIPSVFSGSDIVQWLIKNLTIEDPVEALHLGTLMSAHGYFFPISDHVLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVPGCVNTTEVDIKKSSRMRNPHKTRKSVYGLQNDIRSHSPTHTPTPESKPATEDELQQQIKYWQIQLDRHRLKMSKVADSLLSYTEQYVEYDPFLVPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKGKSLTSKRLTSLVQSY", "length": 469, "header": "tr|A0A287AM63-1|A0A287AM63_PIG Isoform 1 of Regulator of G protein signaling 7 OS=Sus scrofa OX=9823 GN=RGS7 PE=1 SV=3 CANONICAL=A0A287AM63-1" }, "locus": { "chromosome": "10", "start_pos": 12321232, "end_pos": 11951566, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057042.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057042.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045127.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045127.3" } ] } }, { "isoform_ac": "A0A287BHJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63/entry#A0A287BHJ5-1", "sequence": { "sequence": "MAQGNNYGQTSNGVADESPNMLVYRKMEDVIARMQDEKNGIPIRTVKSFLSKIPSVFSGSDIVQWLIKNLTIEDPAVYLCKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVPGCVNTTEVDIKKSSRMRNPHKTRKSVYGLQNDIRSHSPTHTPTPESKPATEDELQQQIKYWQIQLDRHRLKMSKVADSLLSYTEQYVEYDPFLVPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKGRNIPIFPCHKNCTPTLRASTNLL", "length": 424, "header": "tr|A0A287BHJ5-1|A0A287BHJ5_PIG Computationally mapped isoform of Regulator of G protein signaling 7 OS=Sus scrofa OX=9823 GN=RGS7 PE=1 SV=2 CANONICAL=A0A287AM63-1" }, "locus": { "chromosome": "10", "start_pos": 12321232, "end_pos": 11966691, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059035.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059035.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056011.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056011.2" } ] } }, { "isoform_ac": "A0A4X1TKJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63/entry#A0A4X1TKJ5-1", "sequence": { "sequence": "MAQGNNYGQTSNGVADESPNMLVYRKMEDVIARMQDEKNGIPIRTVKSFLSKIPSVFSGSDIVQWLIKNLTIEDPVEALHLGTLMSAHGYFFPISDHVLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVPGCVNTTEVDIKKSSRMRNPHKTRKSVYGLQNDIRSHSPTHTPTPESKPATEDELQQQIKYWQIQLDRHRLKMSKVADSLLSYTEQYVEYDPFLVPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKSGYSMDRRTSFENFSQNVGKSLTSKRLTSLVQSY", "length": 487, "header": "tr|A0A4X1TKJ5-1|A0A4X1TKJ5_PIG Computationally mapped isoform of Regulator of G protein signaling 7 OS=Sus scrofa OX=9823 GN=RGS7 PE=1 SV=1 CANONICAL=A0A287AM63-1" }, "locus": { "chromosome": "10", "start_pos": 12321232, "end_pos": 11951566, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096414.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096414.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078872.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078872.1" } ] } }, { "isoform_ac": "A0A8D1ABU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63/entry#A0A8D1ABU7-1", "sequence": { "sequence": "MAQGNNYGQTSNGVADESPNMLVYRKMEDVIARMQDEKNGIPIRTVKSFLSKIPSVFSGSDIVQWLIKNLTIEDPVEALHLGTLMSAHGYFFPISDHVLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVSVYGLQNDIRSHSPTHTPTPESKPATEDELQQQIKYWQIQLDRHRLKMSKVADSLLSYTEQYVEYDPFLVPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKGKSLTSKRLTSLVQSY", "length": 444, "header": "tr|A0A8D1ABU7-1|A0A287AM63_PIG Computationally mapped isoform of Regulator of G protein signaling 7 OS=Sus scrofa OX=9823 GN=RGS7 PE=1 SV=1 CANONICAL=A0A287AM63-1" }, "locus": { "chromosome": "10", "start_pos": 12321232, "end_pos": 11951566, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066052.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066052.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047006.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047006.2" } ] } }, { "isoform_ac": "A0A8W4FII0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63/entry#A0A8W4FII0-1", "sequence": { "sequence": "MAQGNNYGQTSNGVADESPNMLVYRKMEDVIARMQDEKNGIPIRTVKSFLSKIPSVFSGKFRVFLCVFVCFHEPVEALHLGTLMSAHGYFFPISDHVLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVPGCVNTTEVDIKKSSRMRNPHKTRKSVYGLQNDIRSHSPTHTPTPESKPATEDELQQQIKYWQIQLDRHRLKMSKVADSLLSYTEQYVEYDPFLVPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKSHTCKSGYSMDRRTSFENFSQNVGRNIPIFPCHKNCTPTLRASTNLL", "length": 499, "header": "tr|A0A8W4FII0-1|A0A287AM63_PIG Computationally mapped isoform of Regulator of G protein signaling 7 OS=Sus scrofa OX=9823 GN=RGS7 PE=1 SV=1 CANONICAL=A0A287AM63-1" }, "locus": { "chromosome": "10", "start_pos": 12321232, "end_pos": 11966691, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100110.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100110.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078123.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078123.1" } ] } }, { "isoform_ac": "A0A8X9AEW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63/entry#A0A8X9AEW5-1", "sequence": { "sequence": "MAQGNNYGQTSNGVADESPNMLVYRKMEDVIARMQDEKNGIPIRTVKSFLSKIPSVFSGSDIVQWLIKNLTIEDPVEALHLGTLMSAHGYFFPISDHVLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVPGCVNTTEVDIKKSSRMRNPHKTRKSVYGLQNDIRSHSPTHTPTPESKPATEDELQQQIKYWQIQLDRHRLKMSKVADSLLSYTEQYVEYDPFLVPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKGRNIPIFPCHKNCTPTLRASTNLL", "length": 477, "header": "tr|A0A8X9AEW5-1|A0A287AM63_PIG Computationally mapped isoform of Regulator of G protein signaling 7 OS=Sus scrofa OX=9823 GN=RGS7 PE=1 SV=1 CANONICAL=A0A287AM63-1" }, "locus": { "chromosome": "10", "start_pos": 12321232, "end_pos": 11966691, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057680.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057680.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039121.3", "url": "https://www.ensembl.org/id/ENSSSCP00000039121.3" } ] } }, { "isoform_ac": "F1S9G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63/entry#F1S9G4-1", "sequence": { "sequence": "MAQGNNYGQTSNGVADESPNMLVYRKMEDVIARMQDEKNGIPIRTVKSFLSKIPSVFSGSDIVQWLIKNLTIEDPVEALHLGTLMSAHGYFFPISDHVLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVPGCVNTTEVDIKKSSRMRNPHKTRKSVYGLQNDIRSHSPTHTPTPESKPATEDELQQQIKYWQIQLDRHRLKMSKVADSLLSYTEQYVEYDPFLVPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKSHTCKSGYSMDRRTSFENFSQNVGRNIPIFPCHKNCTPTLRASTNLL", "length": 500, "header": "tr|F1S9G4-1|F1S9G4_PIG Computationally mapped isoform of Regulator of G protein signaling 7 OS=Sus scrofa OX=9823 GN=RGS7 PE=1 SV=4 CANONICAL=A0A287AM63-1" }, "locus": { "chromosome": "10", "start_pos": 12321232, "end_pos": 11966691, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011860.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011860.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011557.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011557.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1ABU7", "url": "https://www.uniprot.org/uniprotkb/A0A8D1ABU7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" }, { "id": "R-SSC-6814122", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6814122", "resource": "Reactome", "description": "Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding" } ], "orthologs": [ { "uniprot_canonical_ac": "O46470-1", "protein_name": "Regulator of G protein signaling 7", "gene_name": "RGS7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAQGNNYGQTSNGVADESPNMLVYRKMEDVIARMQDEKNGIPIRTVKSFLSKIPSVFSGSDIVQWLIKNLTIEDPVEALHLGTLMAAHGYFFPISDHVLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVPGCVNTTEVDIKKSSRMRNPHKTRKSVYGLQNDIRSHSPTHTPTPETKPPTEDELQQQIKYWQIQLDRHRLKMSKVADSLLSYTEQYVEYDPFLAPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKGKSLTSKRLTSLVQSY", "length": 469 }, "evidence": [ { "id": "A0A287AM63", "url": "https://omabrowser.org/oma/group/A0A287AM63/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O54829-1", "protein_name": "Regulator of G protein signaling 7", "gene_name": "Rgs7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAQGNNYGQTSNGVADESPNMLVYRKMEDVIARMQDEKNGIPIRTVKSFLSKIPSVFSGSDIVQWLIKNLTIEDPVEALHLGTLMAAHGYFFPISDHVLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVPGCVNTTEVDIKKSSRMRNPHKTRKSVYGLQNDIRSHSPTHTPTPETKPPTEDELHQQIKYWQIQLDRHRLKMSKVADSLLSYTEQYVEYDPFLVPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKRRPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKRKGKTLTSKRLTSLVQSY", "length": 469 }, "evidence": [ { "id": "A0A287AM63", "url": "https://omabrowser.org/oma/group/A0A287AM63/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P49802-1", "protein_name": "Regulator of G protein signaling 7", "gene_name": "RGS7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQGNNYGQTSNGVADESPNMLVYRKMEDVIARMQDEKNGIPIRTVKSFLSKIPSVFSGSDIVQWLIKNLTIEDPVEALHLGTLMAAHGYFFPISDHVLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVPGCVNTTEVDIKKSSRMRNPHKTRKSVYGLQNDIRSHSPTHTPTPETKPPTEDELQQQIKYWQIQLDRHRLKMSKVADSLLSYTEQYLEYDPFLLPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIKEVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKSGNSMDRRTSFEKFAQNVGRNIPIFPCHKNCTPTLRASTNLL", "length": 495 }, "evidence": [ { "id": "A0A287AM63", "url": "https://omabrowser.org/oma/group/A0A287AM63/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P49803-1", "protein_name": "Regulator of G protein signaling 7", "gene_name": "Rgs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQGNNYGQTSNGVAEESPNMLVYRKMEDVIARMQDEKNGIPIRTVKSFLSKIPSVFSGSDIVQWLIKNLTIEDPVEALHLGTLMAAHGYFFPISDHVLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVPGCVNTTEVDIKKSSRMRNPHKTRKSVYGLQNDIRSHSPTHTPTPETKPPTEDELHRQIKYWQIQLDRHRLKMSKVADSLLSYTEQYVEYDPFLVPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKRKGRNIPIFPCHKNCTPTLRASTNLL", "length": 477 }, "evidence": [ { "id": "A0A287AM63", "url": "https://omabrowser.org/oma/group/A0A287AM63/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM63", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63" } ], "pmid": "" }, { "name": 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"https://www.uniprot.org/uniprotkb/A0A287AM63" } ], "pmid": "" }, { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM63", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63" } ], "pmid": "" }, { "name": "negative regulation of signal transduction", "id": "GO:0009968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009968", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM63", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63" } ], "pmid": "" }, { "name": "regulation of G protein-coupled receptor signaling pathway", "id": "GO:0008277", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008277", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM63", "url": "https://www.uniprot.org/uniprotkb/A0A287AM63" } ], "pmid": "" }, { "name": "negative regulation of G protein-coupled receptor signaling pathway", "id": "GO:0045744", "url": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AMB0-1", "uniprot_ac": "A0A287AMB0", "uniprot_id": "A0A287AMB0_PIG", "mass": { "chemical_mass": 21241.0, "monoisotopic_mass": 21241.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Translationally-controlled tumor protein", "type": "recommended", "evidence": [ { "id": "A0A287AMB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AMB0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Involved in calcium binding and microtubule stabilization. Acts as a negative regulator of TSC22D1-mediated apoptosis, via interaction with and destabilization of TSC22D1 protein.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMB0", "url": "https://www.uniprot.org/uniprotkb/A0A287AMB0#function" }, { "database": "UniProtKB", "id": "ARBA00046053", "url": "https://www.uniprot.org/uniprotkb/ARBA00046053#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AMB0", "url": "https://www.uniprot.org/uniprotkb/A0A287AMB0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287AMB0", "locus": {} } ], "crossref": [ { "id": "A0A287AMB0", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AMB0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000207", 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AML8-1", "uniprot_ac": "A0A287AML8", "uniprot_id": "A0A287AML8_PIG", "mass": { "chemical_mass": 251403.0, "monoisotopic_mass": 251403.0 }, "refseq": { "ac": "XP_020929742", "name": "kinetochore-associated protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929742" }, "gene_names": [ { "name": "KNTC1", "type": "recommended", "evidence": [ { "id": "A0A287AML8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" } ] }, { "name": "KNTC1", "type": "synonym", "evidence": [ { "id": "XP_020929742", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929742" } ] } ], "protein_names": [ { "name": "Kinetochore associated 1", "type": "synonym", "evidence": [ { "id": "A0A287AML8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8/entry#names_and_taxonomy" } ] }, { "name": "kinetochore-associated protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020929742", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929742" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AML8", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KNTC1", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8", "locus": { "chromosome": "14", "start_pos": 30153702, "end_pos": 30241829, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039546", "url": "https://www.ensembl.org/id/ENSSSCG00000039546" } ] } } ], "crossref": [ { "id": "ENSSSCG00000039546", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039546", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100739587", "url": "https://www.ncbi.nlm.nih.gov/gene/100739587", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052802", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052802", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055402", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055402", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055403", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055403", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055404", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055404", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055405", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055405", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739587", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739587", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FYELYLC", "url": "https://omabrowser.org/oma/group/FYELYLC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287ARE8", "url": "https://www.orthodb.org/?gene=A0A287ARE8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15688", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15688", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15688:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15688:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10493", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10493", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24506", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24506", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24515", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24515", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-141430", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141430", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-141444", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141444", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2467813", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2500257", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2500257", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5663220", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68877", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68877", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9648025", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9648025", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020929742", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929742", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AML8", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AML8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARE8", "url": "https://www.uniprot.org/uniprotkb/A0A287ARE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARE8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWSDIELLTSDDTGSGYLSVGSRKEHGTALYQVDLLAKISSEKALLNPKIQACSLSDGFIIVADQSVILLDSVCRSLQLHLVFDTEVDVVGLCQEGKFLLVGERSGNLHLIHVTSKQTLLTNAFVQKANDENQRTYRNLVIEKDGSREGTYYMLLLTNNGFFCVTNLQLVKIQQAIEKVDFDTAKKLQGQIKSSFISTENYHTLDCLNLVAGDLASEVPVIIGGTGNCAFSKWEPDASRKGMTVKNVSDAEIIQGAKKFQLIDNLLFVLDTDNVLSLWDIYTLTPIWNWPSLHIEEFLLTTEADSPSSVTWQGITNLKLVALTTTTNKKIKNLMVYSLPVMEILYSLEVSSVSSLVQRGISTDTIYLLEGICKSDPRLSEDSVSVLVLRCLTEALPENRLSRLLHKHRFAEAESFAIQFGLDVELVYKVKANDILEKLALSSLDTHEQSKWQKLVNEAKENLHKIQDDEFVVNYCLEAQWITYETTQQMLNYAKNRLLKKEDKTIPVYSDGLKEVLRAHAKLTTFYGAFGPEKFSASSWIEFLNNEDDLRDIFLQLREGNLVCAQYLWLRHRAYFETRFDVKMLENLLNSISTPVSLQKLCPWLKNDVIPFVRRTIPKGQKILAKWLEQAARNLELTDKANWPENGLQLAEVFFTAEKPNELGLASSWRWSSLDYQNTEEVCQLRTLINNLRELITLHRKYNCKLALSDFEKENTTTIVFRMFDKVLAPELISSVFEKFIRVYMREHDLQEEELLLLYIEDLLKRCSSKSTSLFDTAWEAKAMAVIGCLSDTDLIFDAVLKIMYAAVVPWSAAVEQLVKQHLEMDHPKVKLLQESYKLMEMKKLLRGYGIREVNLLNKEIMRVVRYILKQDIPSSLEDALKVAEAYMLPKDEIYSLRIIDLIDREQGEDCILLLRSMAPAEAQKTAERVIIWAQLALQEEPDNSNEDKAWRMSIAKTSVDILKVLCDIQKDNLQKKDEWEETLKEFKSVVSLQENFEVFLSFGDYNNSSLVADLREQHIKALQDAQAKCRSQRPAEPTDTQKKRLHAEAKLHRQALALQVSRQELEFELTLRALNDGNVEAALRKCRDLFKYHRKADTGELLFLTCQKLCQMLAHGIPMTIPKGLNLPSEIHDLACQAATICSPDFLLDALELCKYTLTAVELSRQCQMDDCGILMKTSLGTHKDPYEEWSYSDFFSEDGIVLESHMVLPVIYELISSLVPLAESKRYPLDSTSLPYCSISEGNSLVLPVVSSISALLQNLQESSQWELALRFVVGSFGTCLQHSMSNFMNASLSEKLFGEATLVKSRDVVMELKEKAVTFIKGNATTLLYKVFNCRLVDHDLALGYCTLLPQKAVFENLWKLIDKAWQNYDKVLAISLVGSKLASLYQETEMELKFCELSTDAQWGIRLSKLGISFQPVFRQHFLTKKDLIKALVKNIDMDTSLILEYCSTFQLDSDAALQLFIETLLHNTNASQSQGDANTESTQEQRSKLLAKAIEMVPLLRSTKDLVISLSGILHKLDPYDYEMIEVVLKVIERADEKITNININQALSLLKHLKSYRRISPPVDLEYQYMLEHVITLPSAAQIRLPFHLIFFGTAQNFWKILSTELSEESFPTLLLISKLMKFSLDTLYVSTAKHVFEKKLKPKLLLLTQAKSSTLINKEITKITQTIESYLLSIVNPEWAVAIAISLAQDVPEGSFKMSSLKFCLYLAERWLQNIPSEDETHEKAEALLKKLHIQYRRSGTEAVLIAHKLNTTEYLRMIGKPAHLIVSLYEHPSINQRIQDSSGKDYPDIHAAAKEIAEVNEINLEKVWDMLLEKWLCPSTQPGEKPSELFELQEDEALRRVLYLLLSRPIDYSSRMLFIFATSATTTLGVHQLTYAHRTRALQCLLYLADKDTIESLFKKTIEEVKSYLKSITFLASFETLNIPITYELFCNSPKEGMIKGLWKNHSHESMAVKLVTELCLEYKIYDLPLWNGLLQKLLGFNMIPYLRKVLTAISSIHSLWQVPYFSKAWQRVIQIPLLSASCPLSPSQLSDCCESLIAVLECPVSDDLDLIRVARQYVQLDLPAFALACLMLMPHSEKRHQEIKNFLGSCDPQIVLQQLEEHMNTGRLAGFSHQIRSLVLNNIIDKKEFGILAKTKYFTVLKSHMMNTNSITELVNYLANELSLDEASVFITEYYKHCGKPVPPDATPCETLKMFLNGS", "length": 2207, "header": "tr|A0A287AML8-1|A0A287AML8_PIG Isoform 1 of Kinetochore associated 1 OS=Sus scrofa OX=9823 GN=KNTC1 PE=4 SV=1 CANONICAL=A0A287AML8-1" }, "isoforms": [ { "isoform_ac": "A0A287AML8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8/entry#A0A287AML8-1", "sequence": { "sequence": "MWSDIELLTSDDTGSGYLSVGSRKEHGTALYQVDLLAKISSEKALLNPKIQACSLSDGFIIVADQSVILLDSVCRSLQLHLVFDTEVDVVGLCQEGKFLLVGERSGNLHLIHVTSKQTLLTNAFVQKANDENQRTYRNLVIEKDGSREGTYYMLLLTNNGFFCVTNLQLVKIQQAIEKVDFDTAKKLQGQIKSSFISTENYHTLDCLNLVAGDLASEVPVIIGGTGNCAFSKWEPDASRKGMTVKNVSDAEIIQGAKKFQLIDNLLFVLDTDNVLSLWDIYTLTPIWNWPSLHIEEFLLTTEADSPSSVTWQGITNLKLVALTTTTNKKIKNLMVYSLPVMEILYSLEVSSVSSLVQRGISTDTIYLLEGICKSDPRLSEDSVSVLVLRCLTEALPENRLSRLLHKHRFAEAESFAIQFGLDVELVYKVKANDILEKLALSSLDTHEQSKWQKLVNEAKENLHKIQDDEFVVNYCLEAQWITYETTQQMLNYAKNRLLKKEDKTIPVYSDGLKEVLRAHAKLTTFYGAFGPEKFSASSWIEFLNNEDDLRDIFLQLREGNLVCAQYLWLRHRAYFETRFDVKMLENLLNSISTPVSLQKLCPWLKNDVIPFVRRTIPKGQKILAKWLEQAARNLELTDKANWPENGLQLAEVFFTAEKPNELGLASSWRWSSLDYQNTEEVCQLRTLINNLRELITLHRKYNCKLALSDFEKENTTTIVFRMFDKVLAPELISSVFEKFIRVYMREHDLQEEELLLLYIEDLLKRCSSKSTSLFDTAWEAKAMAVIGCLSDTDLIFDAVLKIMYAAVVPWSAAVEQLVKQHLEMDHPKVKLLQESYKLMEMKKLLRGYGIREVNLLNKEIMRVVRYILKQDIPSSLEDALKVAEAYMLPKDEIYSLRIIDLIDREQGEDCILLLRSMAPAEAQKTAERVIIWAQLALQEEPDNSNEDKAWRMSIAKTSVDILKVLCDIQKDNLQKKDEWEETLKEFKSVVSLQENFEVFLSFGDYNNSSLVADLREQHIKALQDAQAKCRSQRPAEPTDTQKKRLHAEAKLHRQALALQVSRQELEFELTLRALNDGNVEAALRKCRDLFKYHRKADTGELLFLTCQKLCQMLAHGIPMTIPKGLNLPSEIHDLACQAATICSPDFLLDALELCKYTLTAVELSRQCQMDDCGILMKTSLGTHKDPYEEWSYSDFFSEDGIVLESHMVLPVIYELISSLVPLAESKRYPLDSTSLPYCSISEGNSLVLPVVSSISALLQNLQESSQWELALRFVVGSFGTCLQHSMSNFMNASLSEKLFGEATLVKSRDVVMELKEKAVTFIKGNATTLLYKVFNCRLVDHDLALGYCTLLPQKAVFENLWKLIDKAWQNYDKVLAISLVGSKLASLYQETEMELKFCELSTDAQWGIRLSKLGISFQPVFRQHFLTKKDLIKALVKNIDMDTSLILEYCSTFQLDSDAALQLFIETLLHNTNASQSQGDANTESTQEQRSKLLAKAIEMVPLLRSTKDLVISLSGILHKLDPYDYEMIEVVLKVIERADEKITNININQALSLLKHLKSYRRISPPVDLEYQYMLEHVITLPSAAQIRLPFHLIFFGTAQNFWKILSTELSEESFPTLLLISKLMKFSLDTLYVSTAKHVFEKKLKPKLLLLTQAKSSTLINKEITKITQTIESYLLSIVNPEWAVAIAISLAQDVPEGSFKMSSLKFCLYLAERWLQNIPSEDETHEKAEALLKKLHIQYRRSGTEAVLIAHKLNTTEYLRMIGKPAHLIVSLYEHPSINQRIQDSSGKDYPDIHAAAKEIAEVNEINLEKVWDMLLEKWLCPSTQPGEKPSELFELQEDEALRRVLYLLLSRPIDYSSRMLFIFATSATTTLGVHQLTYAHRTRALQCLLYLADKDTIESLFKKTIEEVKSYLKSITFLASFETLNIPITYELFCNSPKEGMIKGLWKNHSHESMAVKLVTELCLEYKIYDLPLWNGLLQKLLGFNMIPYLRKVLTAISSIHSLWQVPYFSKAWQRVIQIPLLSASCPLSPSQLSDCCESLIAVLECPVSDDLDLIRVARQYVQLDLPAFALACLMLMPHSEKRHQEIKNFLGSCDPQIVLQQLEEHMNTGRLAGFSHQIRSLVLNNIIDKKEFGILAKTKYFTVLKSHMMNTNSITELVNYLANELSLDEASVFITEYYKHCGKPVPPDATPCETLKMFLNGS", "length": 2207, "header": "tr|A0A287AML8-1|A0A287AML8_PIG Isoform 1 of Kinetochore associated 1 OS=Sus scrofa OX=9823 GN=KNTC1 PE=4 SV=1 CANONICAL=A0A287AML8-1" }, "locus": { "chromosome": "14", "start_pos": 30238540, "end_pos": 30155876, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055619.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055619.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045290.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045290.1" } ] } }, { "isoform_ac": "A0A287ARE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8/entry#A0A287ARE8-1", "sequence": { "sequence": "MWSDIELLTSDDTGSGYLSVGSRKEHGTALYQVDLLAKISSEKALLNPKIQACSLSDGFIIVADQSVILLDSVCRSLQLHLVFDTEVDVVGLCQEGKFLLVGERSGNLHLIHVTSKQTLLTNAFVQKANDENQRTYRNLVIEKDGSREGTYYMLLLTNNGFFCVTNLQLVKIQQAIEKVDFDTAKKLQGQIKSSFISTENYHTLDCLNLVAGDLASEVPVIIGGTGNCAFSKWEPDASRKGMTVKNVSDAEIIQGAKKFQLIDNLLFVLDTDNVLSLWDIYTLTPIWNWPSLHIEEFLLTTEADSPSSVTWQGITNLKLVALTTTTNKKIKNLMVYSLPVMEILYSLEVSSVSSLVQRGISTDTIYLLEGICKSDPRLSEDSVSVLVLRCLTEALPENRLSRLLHKHRFAEAESFAIQFGLDVELVYKVKANDILEKLALSSLDTHEQSKWQKLVNEAKENLHKIQDDEFVVNYCLEAQWITYETTQQMLNYAKNRLLKKEDKTIPVYSDGLKEVLRAHAKLTTFYGAFGPEKFSASSWIEFLNNEDDLRDIFLQLREGNLVCAQYLWLRHRAYFETRFDVKMLENLLNSISTPVSLQKLCPWLKNDVIPFVRRTIPKGQKILAKWLEQAARNLELTDKANWPENGLQLAEVFFTAEKPNELGLASSWRWSSLDYQNTEEVCQLRTLINNLRELITLHRKYNCKLALSDFEKENTTTIVFRMFDKVLAPELISSVFEKFIRVYMREHDLQEEELLLLYIEDLLKRCSSKSTSLFDTAWEAKAMAVIGCLSDTDLIFDAVLKIMYAAVVPWSAAVEQLVKQHLEMDHPKVKLLQESYKLMEMKKLLRGYGIREVNLLNKEIMRVVRYILKQDIPSSLEDALKVAEAYMLPKDEIYSLRIIDLIDREQGEDCILLLRSMAPAEAQKTAERVIIWAQLALQEEPDNSNEDKAWRMSIAKTSVDILKVLCDIQKDNLQKKDEWEETLKEFKSVVSLQENFEVFLSFGDYNNSSLVADLREQHIKALQDAQAKCRSQRPAEPTDTQKKRLHAEAKLHRQALALQVSRQELEFELTLRALNDGNVEAALRKCRDLFKYHRKADTGELLFLTCQKLCQMLAHGIPMTIPKGLNLPSEIHDLACQAATICSPDFLLDALELCKYTLTAVELSRQCQMDDCGILMKTSLGTHKDPYEEWSYSDFFSEDGIVLESHMVLPVIYELISSLVPLAESKRYPLDSTSLPYCSISEGNSLVLPVVSSISALLQNLQESSQWELALRFVVGSFGTCLQHSMSNFMNASLSEKLFGEATLVKSRDVVMELKEKAVTFIKGNATTLLYKVFNCRLVDHDLALGYCTLLPQKAVFENLWKLIDKAWQNYDKVLAISLVGSKLASLYQETEMELKFCELSTDAQWGIRLSKLGISFQPVFRQHFLTKKDLIKALVKNIDMDTSLILEYCRWTILKLKSHIIPPQGIITVKRVCTFQLDSDAALQLFIETLLHNTNASQSQGDANTESTQEQRSKLLAKAIEMVPLLRSTKDLVISLSGILHKLDPYDYEMIEVVLKVIERADEKITNININQALSLLKHLKSYRRISPPVDLEYQYMLEHVITLPSAAQIRLPFHLIFFGTAQNFWKILSTELSEESFPTLLLISKLMKFSLDTLYVSTAKHVFEKKLKPKLLLLTQAKSSTLINKEITKITQTIESYLLSIVNPEWAVAIAISLAQDVPEGSFKMSSLKFCLYLAERWLQNIPSEDETHEKAEALLKKLHIQYRRSGTEAVLIAHKLNTTEYLRMIGKPAHLIVSLYEHPSINQRIQDSSGKDYPDIHAAAKEIAEVNEINLEKVWDMLLEKWLCPSTQPGEKPSELFELQEDEALRRVLYLLLSRPIDYSSRMLFIFATSATTTLGVHQLTYAHRTRALQCLLYLADKDTIESLFKKTIEEVKSYLKSITFLASFETLNIPITYELFCNSPKEGMIKGLWKNHSHESMAVKLVTELCLEYKIYDLPLWNGLLQKLLGFNMIPYLRKVLTAISSIHSLWQVPYFSKAWQRVIQIPLLSASCPLSPSQLSDCCESLIAVLECPVSDDLDLIRVARQYVQLDLPAFALACLMLMPHSEKRHQEIKNFLGSCDPQIVLQQLEEHMNTGRLAGFSHQIRSLVLNNIIDKKEFGILAKTKYFTVLKSHMMNTNSITELVNYLANELSLDEASVFITEYYKHCGKPVPPDATPCETLKMFLNGS", "length": 2230, "header": "tr|A0A287ARE8-1|A0A287ARE8_PIG Computationally mapped isoform of Kinetochore associated 1 OS=Sus scrofa OX=9823 GN=KNTC1 PE=4 SV=3 CANONICAL=A0A287AML8-1" }, "locus": { "chromosome": "14", "start_pos": 30238540, "end_pos": 30155876, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040855.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040855.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046644.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046644.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2195, "start_aa": "Thr", "end_pos": 2195, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2195", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AML8", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739587", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739587", "resource": "KEGG Pathway" }, { "id": "R-SSC-141430", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141430", "resource": "Reactome", "description": "Inactivation of APC/C via direct inhibition of the APC/C complex" }, { "id": "R-SSC-141444", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141444", "resource": "Reactome", "description": "Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal" }, { "id": "R-SSC-2467813", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "resource": "Reactome", "description": "Separation of Sister Chromatids" }, { "id": "R-SSC-2500257", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2500257", "resource": "Reactome", "description": "Resolution of Sister Chromatid Cohesion" }, { "id": "R-SSC-5663220", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "resource": "Reactome", "description": "RHO GTPases Activate Formins" }, { "id": "R-SSC-68877", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68877", "resource": "Reactome", "description": "Mitotic Prometaphase" }, { "id": "R-SSC-9648025", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9648025", "resource": "Reactome", "description": "EML4 and NUDC in mitotic spindle formation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6G9X6-1", "protein_name": "Kinetochore associated 1", "gene_name": "Kntc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWNNIELLTSDDTGSGFLNVGSRKESVTALYQVDLLGKISSEKTSLSPKIQACSLSDGFIIVADQSVILLDSTCRSLQLFLIFDTDVDVVGLCPEGKFLFVGERSGNFHLIYVTSKRTLFTKAFVEKAEDERTYRSLVIEKDGSNEGTYYMLLLTNNGFFYITNLQLSQIEQAIENTDLDSAKKLQGQFKCSFISTESYHSSGCLNLLASQSGKFANETSVIIGGTGSCAFSKWEPDSTKKDMSLKNFVDTDIIRGAKSFQLIDNLLFVLDTDNVLSLWDAYTLTPVWNWPSLPIEQFLLTTEADSPSSVTWQGITNLKLVTLTATTKEKMRNLIIYSLPTMEILYSLEVSSVSSLVQTGISTDTIYLLEGVHKNDPNLCEDSVSNLELRYLTEVLPENRLSRLLHKHRFADAESFAIQFGLDVELVYKVKSNDILEKLALISDKSEQSEWQQLVDEAKENLCKIQDDDFVVNFCLKAQWVTYETTQEMLSYAKTRLMKKEDRTLPACSDDFLEVLKAHAKLTTFYGAFGPEKFSGSAWVEFLNNEDDLKDIFVQLSEGNFDCAQYLWLRHRADFESKFDVKMLENLLNSISTQIPVEKLCSWFKNDVIPFVRRIVPEGQNILAKWLEQASRNLELTDKANWPENGLQLAEVFFTAEKTDKFGFSSSWHWISLKDYQNTEEVQQLRTLVSKLQELIILHRKYNCRLALSEFEKENATTVVFRMFDRVSAPELIPSVLEKFVRVYIREQNLQEEELLLLYIEDLLKRCSSKSMTLFDTAWEAKAMAVIRCLSDTDLIFDAVLKIMYKAVVPWSAAVEQLVRQHLEMDHPKVKLLQESYRLMEMKKLLRGYGIREVNLLNKEIMRVVRYILKQDIPSSLEDALKVAQGYRLSDDEIYSLRVIDLIDRDQGEDCLLLLRSLPPSEAEKTAERVIIWARLALQEEPDGSEEDKAWRISVAKTSMDILKILCDIQKDNLQKKDDAEEFLKRFKMVASLQENFEVFLPFEDYSDTGLVAGLREQYIKAQENAQAEHKFRGPPGPTPAMGTNASVKSKLHRQALVLQVSTQELEAEMALRALKDGKVAVALSKCRDLLKHYCNADTGRLLFVVCQKLCHMLADDVPMVAPVGLNLPSEIHDLTCHAVTICSPDFLLDVLELSKYTLTAVELCRQCQMDDCGILMKAAVGTHKDPYEEWSYSDFFSEDGIVLESQVVLPVIYELISSVVPLAEGKRRPLDSISLPYCSTSEGENLILPLVSSISALLRNLQESSQWELALRFVVASFGTCLQHSVSNVMSMSLSEKLLGKSTLASSRQIIMELKEKSIAFIRGSATTLLHKVFNCRLVDLDLALAYCTLLPQKDVFENLWKFIDKAWQNYDKILALSLVGSRLANLYQDVETGLRFHELSIDAKWGIRLGKLGISFQPAFRQNFLSKKDLIKALVNNIDMDTSLILEYCSTFQLDSDAALRLFIETLLRNTTSQSQGGDAPEPTQHQHSKLLQKATEMVPLLKSTKDLVISLTEILYKLDPYDYEMIEVVLKVIEQANEKITTVNINQALNLLRHLKSYRRMSPPVDLEYQYMLEHLITLPPAAQTRLPFHLILFGTAQNFWKILSSELSEESLPTLLLISKLMKFSLDTLYVSTAKHVFEKNLKPKLLKSAQARSSVMSKEVDKLVQTLESYLLSIVNPEWAVAIAISLTQEIPEGPFKMTSLKFCLYLAERWLQNIPPQDETCEKVKALQKKLYLQFRLSGTEAVLIAHKLNDQEYLRVVGKPAHLIVSLYEHPSISERLCTTSGKDYPDIHAAAKEIAEVNEINLEKIWDMLLEKWLCPSTAPGEKASEFFELEEDEVLHRVVYLLQARPIDYSSRMLFVFATSATSTLGIRQLTFAHRARALQCLLYLADKETIESLFKKPTEEMKSYLKCITFLASFETLNIPITYELFCNSPKEGMIKGLWKNHSHEPMAVRLVAELCLEYKIYDLQLWNGLLQKLLGFNMIPYLRKVLSCISSVHSLWQVPYFSKAWQRVIQIPLLSASCPLRPSQLADCCESLVAILECPVSDDLDMMGVAKQYVQLELPAFALTCLTLMPHSEKRHQQIKNFLNSCDAQIILQQLEEHMNAGQLAGLSQQIRSLVLNHVVNKKEFGILAKTKYFQLLKRHVINTDNVTELVNYLANDLSLDEASSLITEYSKHCGKPVPADTAPSEILKTFLGS", "length": 2205 }, "evidence": [ { "id": "A0A287AML8", "url": "https://omabrowser.org/oma/group/A0A287AML8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V1A857-1", "protein_name": "Kinetochore associated 1", "gene_name": "KNTC1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLVTMWNDIEILVNDDTRREQLSVCLGQECGSALYQVDSLLQITSSEKISVNPQLYACSSRDGSIIVVDRSVVLLDSTGQALQLHIQFDTNVDVVGMCQEKQFLVVGERSGNIHLVHIPSKKTLLTKILVETSSSEKTYLNLFIEKDTAVAGVYHMFILTDKGFFCIMCLPLAKTQEAINKMDMAAAMKLQGQIKTAFIATEEYHSLGCQNFVISNLANKIHMIIGGKGDYVLSKWEVDATNNLVSVRSFADSSLIKDAVKLQVLDNLLFVLDTENILSIWDVFSLTLIWDWPLIHVEEFLLTTESDSSSVMQQGLAGVKLIVMTTSTNKQMRSLMVFALPTMQQLYSLEVSIVSSLVLSGIGTDTIYFLEGIHENHQMPPEGPVSAVVMRSLTEALPENRLSRLLHKHKFTEAESFAIQFGLDVELVYKVKANTILEKLASASIGSYGQEVLLDYVNEAKENLHKIQDSQFVVDYCINAPWPLYETAQEMLNYAKVRILKKDDRTIVSPSDGTLVSLTEQVLRAQARLTTFYGAFGLEKFSGIAWTEFLNNEDVLKNILFQLEEGNLSCAQYLWLRHQADFEDTFDEKMLESLLNAIHVTVPLKELCLWLKNVVIPFLRRVVPKGQKVLAKWLEQGARNLELTDKANWPENGLQMAEIFFTSKNQDEMHLTSFGQWTPLKCSDCEEVHRLKKLVNDLQELTDLYRKYNCRLALCDFEKENTTTIVFRMFDKILAPELVPSILDKFIKPYLCEHNLQKDELLLQYIKDLLERCRTRSASVFETAWEAKAIAVTGCISDTDLKFDAVLQIMHGAVVPWSGAVEQLVKQHLEMNHVKVKLLQESYRLMEMKKLLRAYGIRDTNLLKDKEMIMRLVKYILKQDTPTSLEDALKMVEAYMLPTTEVYILRMIDLIDKERGEESLTLLKSLTTAEAEKVAERLTVWGRLVLQRKADNSEEQKTQMFMTKTLVEILKFLYKIQKDNPLKKDECEANLKTFNTLATLQEDFNIFLSVEDFGNPTLMSTLLEKHISAYETDKYPSKSRQEQTMNCKTKDGKLKNCSTESRLYRMALLLQRSEQELGTTLALRALGAGRVEDAVKICRNFYKNHCNKETGKLLFSTCQRLCHMLGGDVPMNTPEDMNLPAVIYEMACQAATICSPDLLLDSLELCKYTLAAKEIYRQCQIENYGFTAKTTCFGGDKDPYEEWTYNDFFNEDGIVLDSQIVLPVIYETISSLLPISENKLYPLDSTSLANCTFIRGQNLLLPARTPICAVLQNLMECSQCELALRLMVSSFGSCLQHGISNNMDLSLSEKLHDGNIQAETKSFLIAMKQTTASIITTSIMTLLHKVFNCRLIDQNLALGYCAILPREDMFNKLWGVINNTWQNYRKVLSVALVGAQLATQYGEAAEEKKFRELITDAEWGIQLGKFGISFETVFRQPPVRKKELIRTLVQNPEVGTDLILNYCRTFMLDSDAALQLCIETLLLKNANRNHAEDDSAEYSEKQSHYTLLARALEIIPLLKSTNDLVTSLSGILYKLDPYDYETIEIVLKVIQNADERNTSIHLNQALSLLKHLESYKRISPPVDLEHQYVSEHTIPLSPASETRLPFHLIFFRTAQCFWNIISAELSEESFPTLLLISKLMKVSLDTLHMSAAQHVFQKKLKPKIFEMRNTGYTSVVNKETTKTVQTIQSYLLSIINPEWAVAMAHKIAQEFPTGPDQIQALKFCLRLAEKWLKNTTAKDESHEKAEVLQKKLYMQYKRSATENVLITYKLNTAEYLKSIAKPANLIVLLYEHHSIDQRIQNPTGRDYPDIHMAAKEIAEINNLDMNKILNQLLNKWLCPNTLPSEKTQEIFADAQEDEELRRVIYLLQSHPMDYSSRMLFAITTSATSPIGINQLTFAHRSRALKCLLYLADTNTVESLFKKPIQKVKYFLKCFIYLAEFEVLNIPYTYESFHKSPKEGMIKGLWKNHSHEPTAVRLVTELSLEYKVYDFQLWNGLLQKLLGFNMIHYLRKVLIAITGIHSLWQIPSFSRAWRSVVLSPFLTASCPPSPKQIEECCECFVILLKCPVLADLDVIGIAKQYAQLDLPAFALGCLMLIPQSEKREQQIQAFLSTCNTETVLQQIDEHMNTGEVVAFASQIRSLILDSIINEKLYEKISKTKYFPLVKQQLMSTHRMKELVDYFANKNCIEDAAALIREYQEKYGNPTLLDKSSSDILKMYLNGPQETCVLELSSMKS", "length": 2235 }, "evidence": [ { "id": "A0A287AML8", "url": "https://omabrowser.org/oma/group/A0A287AML8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BBQ0-1", "protein_name": "Kinetochore associated 1", "gene_name": "KNTC1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWNDIELLTNDDTGSGYLSVGSGKEHGTALYQVDLLAKISSEKASLNPKIQACSLSDGFIIIADQSVILLDSICRSLQLHLTFDTEVDVVGLCQEGKFLLVGERSGNLHLIHVTSKLTLLTNAFVQKANDENQCTYRNLVIEKDSSSEDTYYMLLLTNNGLFYITNLQLVKIQQAIEKADFDTAKKLQGQIKSSFISTENYHTLGCLNLVAGDLASEIPVIIGGTGNCALSKWEPDSSRKGMTVKSVIDSEIIKGAKKFQLIDNLLFVLDTDNVLSLWDIYTLTPIWNWPVLHVEEFLLTTEAESPSSVTWQGITNLKLVALTTTTNKKMKNLVVCSLPAMEILYSLEVSGISSLVQTGISTDTIYLLEGIFKNDPSLSEDSVSVLALRCLTEALPENRLSRLLHKHRFAEAESFAIQFGLDVELVYKVKSNDILEKLALSSLDTSEQTKWQKLVNEAKENLHKIQDDEFVMNYCLEAQWITYETTHEMLNYAKTRLLKKEDKTVLVYSDGLKEVLRAHAKLTTFYGAFGPEKFSGSSWIEFLNNEDDLKDIFLQLREGNLVCAQYLWLRHRANFESRFDVKMLENLLNSISTPISLQKLCPWLKNDVIPFVRKTVPEGQKILAKWLEQAARNLELTDKANWPENGLQLAEVFFTAENELGLASSWSWSSLDNQNMEEVCQLRTLVNNLRELITLHRKYNCKLALSDFEKEDTTTIVFRMFDKVLAPELIPSIFQKFIRVYMHEHDLQEEELLLLYIEDLLKRCSSKFTSLFDTAWEAKAMAVIGCLSDTDLIFDAVLKIMYAAVVPWSAAVEQLVKQHLEMGHPKVKLLQESYKLMEMKKLLRGYGIREVNLLNKEIMRVVRYILKQDVPSSLEDALKVAEAYMLPKDEIYSLRIIDLIDREQGEDCVLLLRSLPLAEAKKTAERVIIWARLALQEEPDTSNEDKAWRLSVAKTSVDILKILCNSQKDNLQKKDEWEETLKQFKTVASLQENFEVFLSFEDYSKSSLVAELREQHIKAHQVAQAKHKPWRPAEPRATEEQRLSAESKLHRQALTLQVSRQQLEAELTLRALSDGNVEAALRKCRDLFKYHCNTDTGQFLFLMCQKLCHMLASGVPMTVPVGLNLPSEIHDLACQAATICSPDFVLDALELCKYTLMAVELSRQCQMDDCGILTKTSFGTHKDPYEEWSYCDFFSEDGIVLESQMVLPVIYELISSLVPLAESKRYPLDSVSLPYCFTSEGDSLMLPVINSISALLQNLQESSQWELALKFVIGSFGTCLQHSVSSFMNASLSEKLFEEAPLVKSRHVVMELKEKAVMFIRGNATTLLYKVFNCRLVDLDLALGYCTLLPQKEVFENLWKLTDKAWQNYDKILAISLVGSQLASLCQETETKFKFCELSTDARWGIRLSKLGISFQPVFRQHFLTKNDLIKALVKNIDMDTSIILEYCSTFQLDADAALQLFIETLLHNTNASQSQGDVSTGSTKQQRSKLLAKALEMVPLLTSTKDLVISLSGILHKLDPYDYEMIEVVLKVIERADEKITNININQALSLLKHLKSYRRISPPVDLEHQYMLEHVITLPSAAQTRLPFHLIFFGTAQSFWKILSTELSEESFPTLLLVSKLMKFSLDTLYVSTAKHVFEKKLKPKLLQLTQGKSSTLINKEIAKITQTIESYLLSIVNPEWAVAIAISLAQDVPEGSFKMSSLKFCLYLAERWLQNIPSQDETREKAEALLKKLHVQYRRSGTEAVLIAHKLNTAEYLRVIGKPVHLIVSLYEHPSINQRIQNSCGKDYPDIHTAAKEIAEVNEINLEKVWDMLLEKWLCPSAKPDETPSELFELQEDETLRRVLYLLLSRPVDYSSRMLFIFATSATTMLRMHQLTFAHRTRALQCLLYLADKETIESLFKKSIEEVKSYLKCITFLASFEALNIPITYELFCNSPKEGMIKGLWKNHSHEPMAVKLVTELCLEYKIYDLQLWNGLLQKLLGFNMIPYLRKVLTAISSIYPLWQVPYFGRAWQCVVQIPLLSASCPLSPSQLSDCCESLIAVLECPVSDDLDMIRVARQYVQLELPAFALACLMLMPHSEKRHQEIKNFLSSCDPQIILQQLEEHMNTGQLAGFSHQIRSLVLKNIIDKKEFGILAKTKYFPVLKSHMMNTNNITELVNYLADELSLDDASVFITEYYKHCGKPIPPGTTPCETLKMFNGS", "length": 2204 }, "evidence": [ { "id": "A0A287AML8", "url": "https://omabrowser.org/oma/group/A0A287AML8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P50748-1", "protein_name": "Kinetochore-associated protein 1", "gene_name": "KNTC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWNDIELLTNDDTGSGYLSVGSRKEHGTALYQVDLLVKISSEKASLNPKIQACSLSDGFIIVADQSVILLDSICRSLQLHLVFDTEVDVVGLCQEGKFLLVGERSGNLHLIHVTSKQTLLTNAFVQKANDENRRTYQNLVIEKDGSNEGTYYMLLLTYSGFFCITNLQLLKIQQAIENVDFSTAKKLQGQIKSSFISTENYHTLGCLSLVAGDLASEVPVIIGGTGNCAFSKWEPDSSKKGMTVKNLIDAEIIKGAKKFQLIDNLLFVLDTDNVLSLWDIYTLTPVWNWPSLHVEEFLLTTEADSPSSVTWQGITNLKLIALTASANKKMKNLMVYSLPTMEILYSLEVSSVSSLVQTGISTDTIYLLEGVCKNDPKLSEDSVSVLVLRCLTEALPENRLSRLLHKHRFAEAESFAIQFGLDVELVYKVKSNHILEKLALSSVDASEQTEWQQLVDDAKENLHKIQDDEFVVNYCLKAQWITYETTQEMLNYAKTRLLKKEDKTALIYSDGLKEVLRAHAKLTTFYGAFGPEKFSGSSWIEFLNNEDDLKDIFLQLKEGNLVCAQYLWLRHRANFESRFDVKMLESLLNSMSASVSLQKLCPWFKNDVIPFVRRTVPEGQIILAKWLEQAARNLELTDKANWPENGLQLAEIFFTAEKTDELGLASSWHWISLKDYQNTEEVCQLRTLVNNLRELITLHRKYNCKLALSDFEKENTTTIVFRMFDKVLAPELIPSILEKFIRVYMREHDLQEEELLLLYIEDLLNRCSSKSTSLFETAWEAKAMAVIACLSDTDLIFDAVLKIMYAAVVPWSAAVEQLVKQHLEMDHPKVKLLQESYKLMEMKKLLRGYGIREVNLLNKEIMRVVRYILKQDVPSSLEDALKVAQAFMLSDDEIYSLRIIDLIDREQGEDCLLLLKSLPPAEAEKTAERVIIWARLALQEEPDHSKEGKAWRMSVAKTSVDILKILCDIQKDNLQKKDECEEMLKLFKEVASLQENFEVFLSFEDYSNSSLVADLREQHIKAHEVAQAKHKPGSTPEPIAAEVRSPSMESKLHRQALALQMSKQELEAELTLRALKDGNIKTALKKCSDLFKYHCNADTGKLLFLTCQKLCQMLADNVPVTVPVGLNLPSMIHDLASQAATICSPDFLLDALELCKHTLMAVELSRQCQMDDCGILMKASFGTHKDPYEEWSYSDFFSEDGIVLESQMVLPVIYELISSLVPLAESKRYPLESTSLPYCSLNEGDGLVLPVINSISALLQNLQESSQWELALRFVVGSFGTCLQHSVSNFMNATLSEKLFGETTLVKSRHVVMELKEKAVIFIRENATTLLHKVFNCRLVDLDLALGYCTLLPQKDVFENLWKLIDKAWQNYDKILAISLVGSELASLYQEIEMGLKFRELSTDAQWGIRLGKLGISFQPVFRQHFLTKKDLIKALVENIDMDTSLILEYCSTFQLDCDAVLQLFIETLLHNTNAGQGQGDASMDSAKRRHPKLLAKALEMVPLLTSTKDLVISLSGILHKLDPYDYEMIEVVLKVIERADEKITNININQALSILKHLKSYRRISPPVDLEYQYMLEHVITLPSAAQTRLPFHLIFFGTAQNFWKILSTELSEESFPTLLLISKLMKFSLDTLYVSTAKHVFEKKLKPKLLKLTQAKSSTLINKEITKITQTIESCLLSIVNPEWAVAIAISLAQDIPEGSFKISALKFCLYLAERWLQNIPSQDEKREKAEALLKKLHIQYRRSGTEAVLIAHKLNTEEYLRVIGKPAHLIVSLYEHPSINQRIQNSSGTDYPDIHAAAKEIAEVNEINLEKVWDMLLEKWLCPSTKPGEKPSELFELQEDEALRRVQYLLLSRPIDYSSRMLFVFATSTTTTLGMHQLTFAHRTRALQCLFYLADKETIESLFKKPIEEVKSYLRCITFLASFETLNIPITYELFCSSPKEGMIKGLWKNHSHESMAVRLVTELCLEYKIYDLQLWNGLLQKLLGFNMIPYLRKVLKAISSIHSLWQVPYFSKAWQRVIQIPLLSASCPLSPDQLSDCSESLIAVLECPVSGDLDLIGVARQYIQLELPAFALACLMLMPHSEKRHQQIKNFLGSCDPQVILKQLEEHMNTGQLAGFSHQIRSLILNNIINKKEFGILAKTKYFQMLKMHAMNTNNITELVNYLANDLSLDEASVLITEYSKHCGKPVPPDTAPCEILKMFLSGLS", "length": 2209 }, "evidence": [ { "id": "A0A287AML8", "url": "https://omabrowser.org/oma/group/A0A287AML8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8C3Y4-1", "protein_name": "Kinetochore-associated protein 1", "gene_name": "Kntc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWNNIELLTSDDTGSGCLSVGSRKENVTALYQADLLGKISSEKTSLSPKIQAFSLSHGFIIVADQSVILLDSICRSLQLFLIFDTDVDVVGLCQEGKFLFVGERSGNFHLIYVTSKQTLFTKAFVEKALDESQRTYRNLIIEKDGSNEGTYYMLLLTNNGFFYITNLQLSQIEQAIENTDLDSAKKLQGQFKCSFISTENYHSCLSLVASQSGTFASKTSVIIGGTGSCAFSKWEPDSTKKEMSLKNFVGTDIIKGAKSFQLIDNLLFVLDTDNVLSLWDAYTLTPVWNWPSLPVEQFVLTTEADSPSSVTWQGITNLKLVTLTATAKEKMRSLIIYSLPSMETLYSLEVSSVSSLVQTGISTDTIYLLEGIHKNDPNLCEDSVSDLVLRYLTEVLPENRLSRLLHKHRFAEAESFAIQFGLDVELVYKVKSNDMLEKLALISSDKSEQSKWQQLVDEAKENLCKIQDDDFVVNFCLKAQWVTYETTQEMLSYAKTRLMKKEDRALPASSDAFMEVLKAHAKLTTFYGAFGPEKFSGSSWIEFLNNEDDLRDVFLQLSEGNFACAQYLWLRHRADFESKFDVKMLENLLNSISTQFPLENLCSWFKNEVIPFVRRIVPEGQNILAKWLEQASRNLELTDKANWPENGLQLAEVFFTAEKTDRFGFASSWHWISLDYQNTEEVRQLRTLVSKLRELIILHRKYNCKLALSDFEKENATTVVFRMFDRVSAPELIPSVLEKSVRVYIREQNLQEEELLLLYIEDLLKRCSSKSMTLFDTAWEAKAMAVIRCLSDTDLIFDAVLKIMYKAVVPWSAAVEQLVKQHLEMDHPKVKLLQESYKLMEMKKLLRGYGIREVNLLNKEIMRVIRYILKQDIPSSLEDALKVAQGYRLSDDEIYSLRIIDLIDREQGGDCLLLLKSLPAAEAEKTAERVIIWARLALQEEPDGSEEDKAWRISVAKTSVDILKILCDIRKDNLQKKDESEEFLKRFQMVASLQENFEVFLPFEDYSNTALVAGLREQYIKAQEAAQAEHKHRGPPGPTPARGTHLSIKSKLHRQALALQVSEQELEAELTLRALKDGKVVAALSKCRDLLKHYCNADTGRLLFVVCQKLCQMLADDVPMVAPGGLSLPSEIHDLACHAVTICSPDYLLDVLELSKYTLTAVELCRQCQMDDCGMLMKAALGTHKDPYEEWSFSDFFSEDGIVLESQVVLPVIYELISSVMPPAESKRHPLDSISLPYCSTSEGENRILPLVSSISALLRSLQECSQWELALRFVVGSFGTCLQHSMSNVMSISLSKQLLGKNTLANSRHIIMELKEKSITFIRENATTLLHKVFNCRVVDLDLALAYCTLLPQKDVFDNLWKFIDKAWQNYDKILALSLVGSQLANLYQDIETGLWFHELSIDAKWGIRLGKLGISFQPAFRQNFLTKKDLIKALVNNIDMDTSLILEYCSTFQLDSDAALRLFIETLLRNTSSQSQGDAAPESTKHQHSKLLAKATELVPLLKNTKDLVISLSEILYKLDPYDYEMIDVVLKVLEQANEKITSVNINQALNLLRHLKSYRRISPPVDHEYQYALEHMITLPPAAHTRLPFHLILFGTAQNFWKILSSELSEESLPTLLLIAKLMKFSLDTLYVSTAKHLFEKNLKPKLLKSAQARSSTLMSKEVDKLMQTLESYLLSIVNPEWAVAIAISLTQEVPEGPFKMSSLKFCLYLAERWLQNIPPQDETCEKAKALQKKLCLQVRLSGTEAVLIAHKLNDQEYLRVIGKPAHLIVSLYEHPSISERLCTTSGKDYPDIHTAAKEIAEVNEVNLEKIWDMLLEKWLCPSTVPSEKASEFFELEEDEVLHRVVYLLQARPVDYCSRMLFVFATSATSTLGMRQLTFAHKARALQCLLYLADKETIESLFKKPIKEMKSYLKCITFLASFETLNIPITYELFCNSPKEGMIKGLWKNHSHEPMAVRLVAELCLEYKIYDLQLWNGLLQKLLGFNMIPYLRKVLSCISSIHSLWQVPYFSKAWQRVIQIPLLSASCPLRPSQLADCCDSLVAILECPVSDDLDMMGVAKQYVQLDLPAFALTCLTLMPHSEKRHQQIKNFLNSCDARIILQQIEEHMNTGQLAGFSHQIGSLVLNHVVNKKEFGILAKTKYFQLLKCHVINTGNVTELVNYLANDFSVDEASALINEYSKHCGKPVPADAAPCEILQTFLGGS", "length": 2207 }, "evidence": [ { "id": "A0A287AML8", "url": "https://omabrowser.org/oma/group/A0A287AML8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9V9W7-1", "protein_name": "Rough deal", "gene_name": "rod", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MWSNFEASSLEDETISNIFSSRGIFQISSEEEVNKYPDVMASVQCGKMVIGIDKSLLLLEDELVAKCSFLAFGAAIEAIAISSSGNLIVCGLSDGEVHGVFIKGLLLFSVAVNLEDVSLTGGTFRSIHQLDQRFYFTCKNGSIYSLSDIDETCLETLGNMSLNENETIACEKALLEDVTIQRLSKGRSSCSVDCAVLLKRLLTGNISAENNQDDLEAQPGLVITGDQSTMNFRNAANDVTRINLPAQYGSLKQIFNLEHYIIALTDSGHLVEICPYTRTVYMCQTTQQKNLLIEDLLVMECSEDNIELLVLTKSTAEGRFIKIVEYPTLNVKNEVEVPDHAWLVRQPKCAVNLYYLAAKEVNQSSIPSVVEMMLVSETDPSDRFKKLICKGRLEEAEEFGKQFELCLQPIYEAKAKRILVELCNSNSQNVDTKFQDLLQLLSQVESKAFIKSHRMINLNSRHILERYLHEVKKRLTFEDDEEDMLEIDEQLHRLKTLAIIDPYECNTDWQKFIYDNNLVRMVKSLFNTDMPTACLIWRRHSSSILPLLNEDELRTLLGFIPSNTKPFNVVQWLRQFIPMVSNTHPSIMPFITDWSIEMTRNLQYSPHWPDIGLEFCTKILDIFEEIQFTYSDVRRQQERNVGKLRDLVNALQDLSVLKTNYNMGFTLDNYMQDSIDATALSILQHVQLDKLQRLVKNFMYPIFQEKGRQPLDVIKQYISQLVASRLSSSSWLDRAMACIELLHNEDSRLECALSVLQNAPVPWPDTLAPLIRLRASTHPLAVKINAEYEIQVIKIMKVKYGWPADSSDINLELFMMRIVKLNLPDMLDDISALTKAAPELSTSANFNCCYQMARRGQVEMAYEFFKKLNGEKNSKSAKEVVEIMANILENSSSASFESDIKVQEHLNVLELFKLFLPHVESVYERRYLVIKHRFRLRKFGILLSCSSELIPLHRRHCLLDEAIERIIERAQATLNVSAFIASEISELCTALGLPKVFGLHRICQRIGCLPLSCALAYHVVSFVDCVPANAGEFVNLALELLVQQIESAKGKNQETASSLQLINENDPLSFYLAYELLTSALLHESSRRHDLVELIKYIRVAVIHYPLDAIKSHYDGKEQAVNEHICRALDGISVALGETTINFSCALNGSFDVKTLTVPTTTKKRYSVSMFDEVEVQPIQQQPQKKSVGGRMAIVKFLARTLLLMVIETEPNNSLLMQVRNELPENTKADVESACADFFLSLEHLTKVKEHDAWYVMSQYLLDFQKQNCRTKRIINEGFITLQLRRIFRNAMGSKDVNFIELFTMLVVDSEALALLEKLSVEVKTDLQKINFLTLSAMYHEHIEDLDSVHMIRTKRLKLFYYLEFCQQDHRIKGKFNADMDNIEDLLKEFHNKQLDVQLLERMSKDFGFDYQKILITQILSILSAQELRFEVKRDTFGDEELVMLSSAQEMRDMCQPYINEINNVELFTSKLKHFIEDINIYFYELYMCVINILMYFDSAPKEMEIWMNILHFLRHKMITRRRNRPGQVETDTWLKSQRENGVMPKISRYRLPFKPIVEQPLKDILDSELNVDNCQSWFPLIQMYTALKGSKDSSQNCDYFCMSAVKNSISEYKSKNDSESWSLHPTNNAFLQSILRLVEKVNNPNKAFLILYFVSNYARDGADQVEASYECWKFVKEKGHLITDPKSREQVAKVKRRYPIQKTQHLLYVYGLTDEKLLRQVENPTELIQALYHHELILKSSKVDINALVAEIAKLHDLCLATIQYRLLQKWLALTMESAGDGTILEETFMEEQNWPEQANGAESSNSQDASENVNRAFYILSSWPKAEAVKFLVGLIFKGGSVNTSTQLQMYECYSKLNDGSNSFTNTISQRQFISIKCVHELKALGYKSNLEKFSDDHCNKIDILKMIWQRNAQNPLSLEVMANICLGFDIHLPQIWNGILKRMVMFHMVRELNALLDVLSCRPHLLHLDGLAQAWDYVLCHPLQNAVELRSFKQEEVLHKTLLRLQGCPVVHALNLLQFAQLCIVVHRPHMAASLLSFCQSSEQRQKIKKMIHSHPVENLRQQILDLEDAGILPVVLNFALKELNL", "length": 2089 }, "evidence": [ { "id": "A0A287AML8", "url": "https://omabrowser.org/oma/group/A0A287AML8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "kinetochore microtubule", "id": "GO:0005828", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005828", "evidence": [ { "database": "UniProtKB", "id": "A0A287AML8", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" } ], "pmid": "" }, { "name": "RZZ complex", "id": "GO:1990423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990423", "evidence": [ { "database": "UniProtKB", "id": "A0A287AML8", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" } ], "pmid": "" }, { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A287AML8", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AML8", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AML8", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein localization to kinetochore involved in kinetochore assembly", "id": "GO:1903394", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903394", "evidence": [ { "database": "UniProtKB", "id": "A0A287AML8", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" } ], "pmid": "" }, { "name": "mitotic spindle assembly checkpoint signaling", "id": "GO:0007094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007094", "evidence": [ { "database": "UniProtKB", "id": "A0A287AML8", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" } ], "pmid": "" }, { "name": "mitotic sister chromatid segregation", "id": "GO:0000070", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000070", "evidence": [ { "database": "UniProtKB", "id": "A0A287AML8", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A287AML8", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1006, "end_pos": 1008, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1007, "end_pos": 1009, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1291, "end_pos": 1293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1325, "end_pos": 1327, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1473, "end_pos": 1475, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1757, "end_pos": 1759, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1952, "end_pos": 1954, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2205, "end_pos": 2207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 246, "end_pos": 248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 714, "end_pos": 716, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AML8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" }, { "id": "PF24506", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24506" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KNTC1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 393, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AML8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" }, { "id": "PF24520", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24520" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KNTC1 first ARM-repeats", "eco_id": "ECO_0000259", "start_pos": 402, "end_pos": 647, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AML8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" }, { "id": "PF24516", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24516" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KNTC1 second ARM-repeats", "eco_id": "ECO_0000259", "start_pos": 753, "end_pos": 916, "start_aa": "Glu", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AML8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" }, { "id": "PF24515", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24515" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KNTC1 third ARM-repeats", "eco_id": "ECO_0000259", "start_pos": 1324, "end_pos": 1534, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AML8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AML8" }, { "id": "PF10493", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10493" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RZZ complex subunit KNTC1/ROD C-terminal", "eco_id": "ECO_0000259", "start_pos": 1580, "end_pos": 2128, "start_aa": "Ile", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { 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"Protein" ] } ], "sequence": { "sequence": "MLFDKVKAFMVQLDGASAGAEPVFSGGQAVVGRVLLELTGPARVGTLKLRARGRAHVHWTESRSAGSSTAYTQSYSERVEFVNHRATLLAPDTGEITTLPPGRHEFPFSFQLPPTLVTSFEGKHGSVRYCIKATLHRPWVPARRTRKVFTVIEPVDINTPALLAPQAGAREKIARSWYSNRGLVSLSAKIDRKGYTPGEVIPVFAEIDNGTTRPVLPRAAVVQTQTFMARGARKQKRAVVASLSGEPVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGSSKLLLELPLVIGTIPLHPFGSRSSSVGSHASFLLDWGLGVLPERPEAPPEYSEVVADDEMAAAAAAVEQSPFPLLQNPNMSPEGPFFAYIQEFRYRPPPLYSEEDPNPPSEVVRPRCMTC", "length": 411, "header": "tr|A0A287AMQ8-1|A0A287AMQ8_PIG Isoform 1 of Arrestin domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ARRDC2 PE=3 SV=1 CANONICAL=A0A287AMQ8-1" }, "isoforms": [ { "isoform_ac": "A0A287AMQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMQ8/entry#A0A287AMQ8-1", "sequence": { "sequence": 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"MVKAPQSEERLAGGGKGNNSVLACGAQAFWSIFGADAAEVPGTRSHSRQEAAMPHIPEDEEPPGEPQAAQSPASQGSPTAGISCSPPTIILTGDASSPEGETDKNLVNRAHSPHRRLSHRHLKVSTASLTSVDPAGHVIDLVNDQLPDISISEEDKKKNLALLEEAKSVSERFLTRRGRKSRSSPGDSPSAVSSNLGPGVSSASSQSNSLTVPTTPGLDACGGPQSPLPGASPQKGDEAEVSSPHLGEPNVLKGLADWKQNDQRKVSQGRLTPCSPTVEKSKELAIEQKENFDPLQRPEAIPKGPTSGTGSGGKMALNSPQPGPAESELGKPLPKTAKEGSPLPRSPAQGSGGPAPQAPQGKSTVGEPTGSKVGSKAELWPPVSRPPLLRGVSWDSGPEEPGPRLQKVLAKLPLAEEEKRFSGKAGSKLAKAPGLKDFQIQVQPVRMQKLTKLREEHILLRNQNLVGLKLPDLSEAAEQEKGPSSVLSPAIEEEESKCGLDVMPNISDVLLRKLRVHKSLPGSAPPLTEKEVENVFVQLSLAFRNDSYTLESRIHQAERERNLTEENTEKELENFKASITSSASLWHHCEHRETYQKLLEDIAVLHRLAARLSSRAEMVGAVRQEKRMSKATEVMMQYVENLKRTYEKDHAELMEFKKLANQNSSRSCGPSEDGVPRTSRSMSLTLGKNMPRRRVSVAVVPKFNILNLPGQSPSSSPTPSLPTLAESPNGKGNPPVTSALPALLENGKTNGDPDGEVSAPVPPPSCLEGISQETKARMEEEAYNKGYQEVLKKTKELQDLTEEEEEQKSESPEEPEEAEETGEEEKEQRSSKLEDLVHFLQVLYPKLCQHWQVFWMMAAAMLVLTVVLGLYGSYSSCVEQADGPLGKSTCSADQRDSWWSSGLQHEQPMEQ", "length": 911, "header": "tr|A0A287AMS2-1|A0A287AMS2_PIG Isoform 1 of Inositol 1,4,5-triphosphate receptor associated 1 OS=Sus scrofa OX=9823 GN=IRAG1 PE=1 SV=1 CANONICAL=A0A287AMS2-1" }, "locus": { "chromosome": "2", "start_pos": 48927505, "end_pos": 48784384, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065562.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065562.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045217.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045217.1" } ] } }, { "isoform_ac": "A0A5G2QC69-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMS2/entry#A0A5G2QC69-1", "sequence": { "sequence": "MDEIVLTGVNPSQPVEPRPFGASLGLTQRRFRAHAATPARRLPCPTFPRTRSPPESHRQPRAPPANCVFSLEGFLEERACEGGCNLEESERNVKRPAGHQEPGEGSPTAGISCSPPTIILTGDASSPEGETDKNLVNRAHSPHRRLSHRHLKVSTASLTSVDPAGHVIDLVNDQLPDISISEEDKKKNLALLEEAKSVSERFLTRRGRKSRSSPGDSPSAVSSNLGPGVSSASSQSNSLTVPTTPGEHLLSSPQPASGVLALPYLFQNVLKGLADWKQNDQRKVSQGRLTPCSPTVEKSKELAIEQKENFDPLQRPEAIPKGPTSGTGSGGKMALNSPQPGPAESELGKPLPKTAKEGSPLPRSPAQGSGGPAPQAPQGKSTVGEPTGSKVGSKAELWPPVSRPPLLRGVSWDSGPEEPGPRLQKVLAKLPLAEEEKRFSGKAGSKLAKAPGLKDFQIQVQPVRMQKLTKLREEHILLRNQNLVGLKLPDLSEAAEQEKGPSSVLSPAIEEEESKCGLDVMPNISDVLLRKLRVHKSLPGSAPPLTEKEVENVFVQLSLAFRNDSYTLESRIHQAERERNLTEENTEKELENFKASITSSASLWHHCEHRETYQKLLEDIAVLHRLAARLSSRAEMVGAVRQEKRMSKATEVMMQYVENLKRTYEKDHAELMEFKKLANQNSSRSCGPSEDGVPRTSRSMSLTLGKNMPRRRVSVAVVPKFNILNLPGQSPSSSPTPSLPTLAESPNGKGNPPVTSALPALLENGKTNGDPDGEVSAPVPPPSCLEGISQETKARMEEEAYNKGYQEVLKKTKELQDLTEEEEEQKSESPEEPEEAEETGEEEKEQRSSKLEDLVHFLQVLYPKLCQHWQVFWMMAAAMLVLTVVLGLYGSYSSCVEQADGPLGKSTCSADQRDSWWSSGLQHEQPMEQ", "length": 929, "header": "tr|A0A5G2QC69-1|A0A287AMS2_PIG Computationally mapped isoform of Inositol 1,4,5-triphosphate receptor associated 1 OS=Sus scrofa OX=9823 GN=IRAG1 PE=1 SV=2 CANONICAL=A0A287AMS2-1" }, "locus": { "chromosome": "2", "start_pos": 48927505, "end_pos": 48834590, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071076.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071076.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062144.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062144.2" } ] } }, { "isoform_ac": "A0A5G2QGI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMS2/entry#A0A5G2QGI0-1", "sequence": { "sequence": "MGILAGSPTAGISCSPPTIILTGDASSPEGETDKNLVNRAHSPHRRLSHRHLKVSTASLTSVDPAGHVIDLVNDQLPDISISEEDKKKNLALLEEAKSVSERFLTRRGRKSRSSPGDSPSAVSSNLGPGVSSASSQSNSLTVPTTPGLDACGGPQSPLPGASPQKGDEAEVSSPHLGEPNVLKGLADWKQNDQRKVSQGRLTPCSPTVEKSKELAIEQKENFDPLQRPEAIPKGPTSGTGSGGKMALNSPQPGPAESELGKPLPKTAKEGSPLPRSPAQGSGGPAPQAPQGKSTVGEPTGSKVGSKAELWPPVSRPPLLRGVSWDSGPEEPGPRLQKVLAKLPLAEEEKRFSGKAGSKLAKAPGLKDFQIQVQPVRMQKLTKLREEHILLRNQNLVGLKLPDLSEAAEQEKGPSSVLSPAIEEEESKCGLDVMPNISDVLLRKLRVHKSLPGSAPPLTEKEVENVFVQLSLAFRNDSYTLESRIHQAERERNLTEENTEKELENFKASITSSASLWHHCEHRETYQKLLEDIAVLHRLAARLSSRAEMVGAVRQEKRMSKATEVMMQYVENLKRTYEKDHAELMEFKKLANQNSSRSCGPSEDGVPRTSRSMSLTLGKNMPRRRVSVAVVPKFNILNLPGQSPSSSPTPSLPTLAESPNGKGNPPVTSALPALLENGKTNGDPDGEVSAPVPPPSCLEGISQETKARMEEEAYNKGYQEVLKKTKELQDLTEEEEEQKSESPEEPEEAEETGEEEKEQRSSKLEDLVHFLQVLYPKLCQHWQVFWMMAAAMLVLTVVLGLYGSYSSCVEQADGPLGKSTCSADQRDSWWSSGLQHEQPMEQ", "length": 841, "header": "tr|A0A5G2QGI0-1|A0A287AMS2_PIG Computationally mapped isoform of Inositol 1,4,5-triphosphate receptor associated 1 OS=Sus scrofa OX=9823 GN=IRAG1 PE=1 SV=2 CANONICAL=A0A287AMS2-1" }, "locus": { "chromosome": "2", "start_pos": 48927505, "end_pos": 48745652, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082657.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082657.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063877.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063877.2" } ] } }, { "isoform_ac": "A0A5G2R669-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMS2/entry#A0A5G2R669-1", "sequence": { "sequence": "MVKAPQSEERLAGGGKGNNSVLACGAQAFWSIFGADAAEVPGTRSHSRQEAAMPHIPEDEEPPGEPQAAQSPASQGSPTAGISCSPPTIILTGDASSPEGETDKNLVNRAHSPHRRLSHRHLKVSTASLTSVDPAGHVIDLVNDQLPDISISEEDKKKNLALLEEAKSVSERFLTRRGRKSRSSPGDSPSAVSSNLGPGVSSASSQSNSLTVPTTPGLDACGGPQSPLPGASPQKGDEAEVSSPHLGEPEHILLRNQNLVGLKLPDLSEAAEQEKGPSSVLSPAIEEEESKCGLDVMPNISDVLLRKLRVHKSLPGSAPPLTEKEVENVFVQLSLAFRNDSYTLESRIHQAERERNLTEENTEKELENFKASITSSASLWHHCEHRETYQKLLEDIAVLHRLAARLSSRAEMVGAVRQEKRMSKATEVMMQYVENLKRTYEKDHAELMEFKKLANQNSSRSCGPSEDGVPRTSRSMSLTLGKNMPRRRVSVAVVPKFNILNLPGQSPSSSPTPSLPTLAESPNGKGNPPVTSALPALLENGKTNGDPDGEVSAPVPPPSCLEGISQETKARMEEEAYNKGYQEVLKKTKELQDLTEEEEEQKSESPEEPEEAEETGEEEKEQRSSKLEDLVHFLQVLYPKLCQHWQVFWMMAAAMLVLTVVLGLYGSYSSCVEQADGPLGKSTCSADQRDSWWSSGLQHEQPMEQ", "length": 705, "header": "tr|A0A5G2R669-1|A0A287AMS2_PIG Computationally mapped isoform of Inositol 1,4,5-triphosphate receptor associated 1 OS=Sus scrofa OX=9823 GN=IRAG1 PE=1 SV=1 CANONICAL=A0A287AMS2-1" }, "locus": { "chromosome": "2", "start_pos": 48927505, "end_pos": 48784384, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080874.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080874.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072746.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072746.1" } ] } }, { "isoform_ac": "A0A5G2RCC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMS2/entry#A0A5G2RCC8-1", "sequence": { "sequence": "MVKAPQSEERLAGGGKGNNSVLACGAQAFWSIFGADAAEVPGTRSHSRQEAAMPHIPEDEEPPGEPQAAQSPASQGSPTAGISCSPPTIILTGDASSPEGETDKNLVNRAHSPHRRLSHRHLKVSTASLTSVDPAGHVIDLVNDQLPDISISEEDKKKNLALLEEAKSVSERFLTRRGRKSRSSPGDSPSAVSSNLGPGVSSASSQSNSLTVPTTPGEHLLSSPQPASGVLALPYLFQNVLKGLADWKQNDQRKVSQGRLTPCSPTVEKSKELAIEQKENFDPLQRPEAIPKGPTSGTGSGGKMALNSPQPGPAESELGKPLPKTAKEGSPLPRSPAQGSGGPAPQAPQGKSTVGEPTGSKVGSKAELWPPVSRPPLLRGVSWDSGPEEPGPRLQKVLAKLPLAEEEKRFSGKAGSKLAKAPGLKDFQIQVQPVRMQKLTKLREEHILLRNQNLVGLKLPDLSEAAEQEKGPSSVLSPAIEEEESKCGLDVMPNISDVLLRKLRVHKSLPGSAPPLTEKEVENVFVQLSLAFRNDSYTLESRIHQAERERNLTEENTEKELENFKASITSSASLWHHCEHRETYQKLLEDIAVLHRLAARLSSRAEMVGAVRQEKRMSKATEVMMQYVENLKRTYEKDHAELMEFKKLANQNSSRSCGPSEDGVPRTSRSMSLTLGKNMPRRRVSVAVVPKFNILNLPGQSPSSSPTPSLPTLAESPNGKGNPPVTSALPALLENGKTNGDPDGEVSAPVPPPSCLEGISQETKARMEEEAYNKGYQEVLKKTKELQDLTEEEEEQKSESPEEPEEAEETGEEEKEQRSSKLEDLVHFLQVLYPKLCQHWQVFWMMAAAMLVLTVVLGLYGSYSSCVEQADGPLGKSTCSADQRDSWWSSGLQHEQPMEQ", "length": 900, "header": "tr|A0A5G2RCC8-1|A0A287AMS2_PIG Computationally mapped isoform of Inositol 1,4,5-triphosphate receptor associated 1 OS=Sus scrofa OX=9823 GN=IRAG1 PE=1 SV=1 CANONICAL=A0A287AMS2-1" }, "locus": { "chromosome": "2", "start_pos": 48927505, "end_pos": 48784384, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068545.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068545.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074041.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074041.1" } ] } }, { "isoform_ac": "I3LHQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMS2/entry#I3LHQ8-1", "sequence": { "sequence": "MNPVFIEAGCQPVEPRPFGASLGLTQRRFRAHAATPARRLPCPTFPRTRSPPESHRQPRAPPANCVFSLEGFLEERACEGGCNLEESERNVKRPAGHQEPGEGSPTAGISCSPPTIILTGDASSPEGETDKNLVNRAHSPHRRLSHRHLKVSTASLTSVDPAGHVIDLVNDQLPDISISEEDKKKNLALLEEAKSVSERFLTRRGRKSRSSPGDSPSAVSSNLGPGVSSASSQSNSLTVPTTPGLDACGGPQSPLPGASPQKGDEAEVSSPHLGEPNVLKGLADWKQNDQRKVSQGRLTPCSPTVEKSKELAIEQKENFDPLQRPEAIPKGPTSGTGSGGKMALNSPQPGPAESELGKPLPKTAKEGSPLPRSPAQGSGGPAPQAPQGKSTVGEPTGSKVGSKAELWPPVSRPPLLRGVSWDSGPEEPGPRLQKVLAKLPLAEEEKRFSGKAGSKLAKAPGLKDFQIQVQPVRMQKLTKLREEHILLRNQNLVGLKLPDLSEAAEQEKGPSSVLSPAIEEEESKCGLDVMPNISDVLLRKLRVHKSLPGSAPPLTEKEVENVFVQLSLAFRNDSYTLESRIHQAERERNLTEENTEKELENFKASITSSASLWHHCEHRETYQKLLEDIAVLHRLAARLSSRAEMVGAVRQEKRMSKATEVMMQYVENLKRTYEKDHAELMEFKKLANQNSSRSCGPSEDGVPRTSRSMSLTLGKNMPRRRVSVAVVPKFNILNLPGQSPSSSPTPSLPTLAESPNGKGNPPVTSALPALLENGKTNGDPDGEVSAPVPPPSCLEGISQETKARMEEEAYNKGYQEVLKKTKELQDLTEEEEEQKSESPEEPEEAEETGEEEKEQRSSKLEDLVHFLQVLYPKLCQHWQVFWMMAAAMLVLTVVLGLYGSYSSCVEQADGPLGKSTCSADQRDSWWSSGLQHEQPMEQ", "length": 938, "header": "tr|I3LHQ8-1|A0A287AMS2_PIG Computationally mapped isoform of Inositol 1,4,5-triphosphate receptor associated 1 OS=Sus scrofa OX=9823 GN=IRAG1 PE=1 SV=3 CANONICAL=A0A287AMS2-1" }, "locus": { "chromosome": "2", "start_pos": 48927505, "end_pos": 48823341, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029147.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029147.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023605.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023605.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 306, "start_aa": "Thr", "end_pos": 306, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr306", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 718, "start_aa": "Thr", "end_pos": 718, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr718", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-418457", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418457", "resource": "Reactome", "description": "cGMP effects" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M6T5-1", "protein_name": "Inositol 1,4,5-triphosphate receptor associated 1", "gene_name": "Irag1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPHIPEDEEPPGEPHEAQTQDSPSAGPLCSPPTIILTGDTSSPEGEADRNLINRAPSPHRRLSHRQLKASTASLTSVDPTGHVIDLVNDQLPDISISEEDKKKNLALLEEAKSVSERFLTRRGRKSRSSPGDSPSAVSPNLSPGASPAPSRSCSLTISTPPGFDTCSGPQPPLPGGPPQQKGHEAAISSPHLGEPNVSKGLADRKQNDQRKVSQGRLAPRSPTAEKSKELTVEQKENFDPLQHPEATPMAQASGASISGKMALNSPQPGPAEMELGRQLLKTAREGSPLPRGTAQASGGTGSPLPQGQGSAGEPVGHKAGSKAELRSPVSRPPLIRGVSWDSSPEEPGPLLQKVLAKLPLSEEEKRFPGKAKPAKPPGLKDFQIQVQPVRMQKLTKLREEHIMMRNQNLVGFKLPELSEAAEQDKGVSSELTPATEEEESKSGLDVMPNISDILLRKLRVHKSLTGSAPPLTEKEVENVFVQLSLAFRNDSYTLESRINQAERERNLTEENTEKELENFKASITSSASIWYNCEHRETYQKLLEDITVLHRLAARLSSRAEVVGAVRQEKRMSKATEVMMQYVENLKRTYEKDHAELMEFKKLANQNSSRSCGPSEDGVPRTARSMSLTMGKNMPRRRVSVAVVPKFNALNLPGQAPSSSPIPSLPALSESPNGKGNTSVPPVLPALLENGKTNAEADCEACVPVPLPSCLEDMSQETKARAEEEAYNKGYQEGVKKTEELQDLKEEEEEQKMESPEEPAEVEETEEEEKDQRSSKLEELVRFLQIMYPKLCQHWQVIWMMTAVMLVLSVVLGLYSSYNSCTEQADGPPGRSTCSAAQRDSWWSSGLQQEQPAEQ", "length": 855 }, "evidence": [ { "id": "A0A287AMS2", "url": "https://omabrowser.org/oma/group/A0A287AMS2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AC58G1J8-1", "protein_name": "Inositol 1,4,5-triphosphate receptor associated 1 isoform X1", "gene_name": "mrvi1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFHPCSRGWCSGFPHKSKDMRYRALAMASANSAGHQSHLDDVGPGISSFVSCDHDCHECSVPSLSTDSGTYSVDPCHLLENSEDFSSENRDLSDCADTNGLSEEELLNITFEACDTSGKGEVRVSTVIQYLQAMTLQSSGQDKITSLRHMLDPEKQDSPVSRDEFHATMREWIRKCCQDGASVDKNNTTESALRKSPIMGTERHLPLTEATYTDGDECSEPADLSGLVAELKHTQRRLKEQNSSLMRNVSQCEDTILTLSLEVSELHTKLASAQLYVVRARSLSEELDECRCALRESQERAARAHASNCTLIKDCEQLKALFRITEEKNEKLTLEKNLAEDRLNKLRKENSELRGELEESHLVLAVKDLELTKKCILLEKLRDTHFESHKVIEGLQSELMRLQEHSQQALFRLNKYHISSCGPHRTGLTNHQSLHQEIQEAQPDKVGNCASEKCLQDQQQHGSSRQELVTLLKELELLESPHGLHKAQHQTQEAHIAAAITWWRGQGKDGKINQTVQDPQEAVRDMQKRLQILEVERTRVILKDQGTSTSEDPLIQFRDVAMVTDSSEEHLAAGDMLKSLRKVEDMVTEVLRAAQVLMGCEKKMKERIKAISMRMERALSRGEATESQITLLENAQSLCKSQTIATGVLVDYSSPVVTTFSTPELVTQENTREHSISSQKGVSLLYTGATEDHSNKVNNTHHSTFKDPDPGSPSEFLLKRVSGVCFEPLFTGLPSVGVIIPPGHSSLYTQISLPEPSACEEPTPHNRQENVAGSDQPTSNDSFLSESGDTGSTLAANKETCTSLNKGDAGCPGTELQNSRRKTETSERCQNYSGRTEALKLLKQGKLSKFADDWDNQGFSSPREALVEDSGICQEERQESDCSGRSREESEHRGKSQARTKNSEAQEKHKTSDSDTLIRIQATGLADNLEGQQDPPPVCQFTHSRGEQTSLKSAPSFVTESVASFVFPHTRSRPPLTPAMPTLPEEEEDSPEELDSTSSSPSTYAPVESKMVSVNVSPPAIVLQRQVIKQESCPLEKARPHSPRPRLSRNSPSSCPITTVDGDGHVIDLVKDQLPDLKLSEEDRQKNLELLEEAKKVSDRFLQRRGRRSTCSLTESPTALSPNPTPSSSPRPSRSSSLSSPSALGPEVSQTPPASPSLTQHLEVPSNHDQGDTSKPEQETFSRLVEWMPSDKRKVSSGTLTPRYTTAIPAREPSALQKDRPEHHGPAEKGKNSEHAGQKKEESPSRGITQPLATGVAKPVPRPPTQQAPCTAEIKTIGAFPPLMRAVSWDIVGSMNMRNAAPKGEDGPSFPDKQRESLFMSSGYKDFPVPPGGVQKLSKLREEHKLVRNQSISSSKLPDLNEIAEQERGPPSPLISSPSEEETKEKPDAMPNISDVMLRKLKLHRGSTGCAPPLSEKEVENAFVQLSLAFRNDNYTLESRQKQAERERNLTEENLEKELEEFKVTLKSTVSLWQNVEQREFYQNLLETIAVLHRLTIRLSSRAEMVGAVRQEKRMNKATEVMMQYVENLKRTYEKDHAELMEFKKLANQNSNRCYGGSMDTGDEGVPRSSRSMSMQMGKALPRRRVSVAVVPKFNLLNIPGQTPAAGPNITPGALPVVCEANTIKNGSSSDPTQQDVPDKPSGNPLTEQESEATPTKVVCSPEKVTEEIKAKIEEEAYNKGYLEGLKKCKELQELKEEEEKQKECDEEARANADKDRKTNSRFEEALEVLDRIFPKFFRRNRVLWIVLTLFFASFIIVNVINMLSSRYSDSGDTSAEKSAIPELRVNGRSV", "length": 1791 }, "evidence": [ { "id": "A0A287AMS2", "url": "https://omabrowser.org/oma/group/A0A287AMS2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZDF3-1", "protein_name": "Inositol 1,4,5-triphosphate receptor associated 1", "gene_name": "Irag1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHIPEDEEPPGEPQAAQTQDSPSAGPFCSPPTIILTGDASSPGGETDTNLVKRAPSPHRRLSHRHLKVSTASLTSVDPLGHVIDLVNDQLPDISISEEDKKKNLALLEEAKLVSERFLTRRGRRSRSSLGDAPSAVSPNLSSGASPASSRSCSFTISTPPGFDTCSGPQSPLPGSPAQQKGHEDDVFSSHLGEPNASKGLADRKQNDQRKVSQGRLAPRSPTVEKSKELSVEQKENFDPLQHLEATPMAQTSGASVSGKMALNSPQPGPAEMELGRQLLKTAREDNPLPRTTVQGSGGTASPHSQGQGSAGELMGPKAGSKAEPRPPVSRPPLIRGVSWDSSPEEPGPLLQKVLAKLPLAEEEKRFPGKAKPAKPPGLKDFQIQVQPVRMQKLTKLREEHILMRNQNLVGFKLPELSEAAEQDKGVSSELAPAAEEEESKSGLDVMPNISDILLRKLRVHKSLTGSAPPLTEKEVENVFVQLSLAFRNDSYTLESRINQAERERNLTEENTEKELENFKASITSSASIWYHCEHRETYQKLLEDIAVLHRLAARLSSRAEVVGAVRQEKRMSKATEVMMQYVENLKRTYEKDHAELMEFKKLANQNSSRSCGPSEDGVPRTARSMSLTMGKNMPRRRVSVAVVPKFNALNLPGQAPSSSPMPSLPALSESTNGRSSISTSPVLPALLENGKTNAEANCEVCAPVPLPSYPEETSQEAKARAEEEAYNKGYQEGVKKTEELQDLKEEEEEQKAESPQEPEEVEETQEDEKDQRSSKLEELVHFLQVMYPKLCQHWQVIWMMAAVMLVLSVVLGLYSSYNSCTEQADGPPGRSTCSAAQRDSWWSSGLQQELPAEQ", "length": 855 }, "evidence": [ { "id": "A0A287AMS2", "url": "https://omabrowser.org/oma/group/A0A287AMS2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9WUX5-1", "protein_name": "Inositol 1,4,5-triphosphate receptor associated 1", "gene_name": "Irag1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRSLTCPFGISPACGAQASWSIFGVGTAEVPGTHSHSNQAAAMPHIPEDEEPPGEPQAAQTQDSPSAGPFPSPPTIVLTGDASSPEGETDKNLVNRAPSPHRRLSHRHLKVSTASLTSVDPSGHVIDLVNDQLPDISISEEDKKKNLALLEEAKLVSERFLTRRGRKSRSSLGDSPSAVSPNLSSGASPASSRSCSLTISTSPGLDICSGPQSPLPGAPPQQKGHEDGVSSPCPGEPNVSKGLADLKQNDQRKVSQGRLAPRSPTVEKTKELTVEQKENFDPLQHVEATPMAQASGASISGKMALNSPQPGPAEMELGRQLLKTAREGNPLPRTTAQGSGGTVSPHSLGQGSAGEPMGPKAGSKAELRSPVSRPPLIRGVSWDSSPEEPGPLLQKVLAKLPLAEEEKRFPGKAKPAKPPGLKDFQIQVQPVRMQKLTKLREEHILMRNQNLVGFKLPELSEAAEQDKGVSPELAPAAEEEESKSGLDVMPNISDILLRKLRVHKSLTGSAPPLTEKEVENVFVQLSLAFRNDSYTLESRINQAERERNLTEENTEKELENFKASITSSANIWYHCEHRETYQKLLEDIAVLHRLAARLSSRAEVVGAVRQEKRMSKATEVMMQYVENLKRTYEKDHAELMEFKKLANQNSSRSCGPSEDGVPRTARSMSLTMGKNMPRRRVSVAVVPKFNALNLPGQAPSSSPMPSLPALSESSNGKSSISVSPALPALLENGKTNAEANCEVGAPVPLPSCLEETSQETKAKAEEEAYSKGYQEGVKKTEELQDLKEEEEEEQKTESPEEPEEVEETQEDEKDQGSSKLEELVHFLQVMYPKLCQHWQVIWMMAAVMLVLSVVLGLYSSYNSCTEEADGPPGRSTCSAAQRDSWWSSGLQQELPAEQ", "length": 899 }, "evidence": [ { "id": "A0A287AMS2", "url": "https://omabrowser.org/oma/group/A0A287AMS2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y6F6-9", "protein_name": "Inositol 1,4,5-triphosphate receptor associated 1", "gene_name": "IRAG1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGMDLTCPFGISPACGAQASWSIFGADAAEVPGTRGHSQQEAAMPHIPEDEEPPGEPQAAQSPAGQGPPAAGVSCSPTPTIVLTGDATSPEGETDKNLANRVHSPHKRLSHRHLKVSTASLTSVDPAGHIIDLVNDQLPDISISEEDKKKNLALLEEAKLVSERFLTRRGRKSRSSPGDSPSAVSPNLSPSASPTSSRSNSLTVPTPPGLDVCSGPPSPLPGAPPQQKGDEADVSSPHPGEPNVPKGLADRKQNDQRKVSQGRLAPRPPPVEKSKEIAIEQKENFDPLQYPETTPKGLAPVTNSSGKMALNSPQPGPVESELGKQLLKTGWEGSPLPRSPTQDAAGVGPPASQGRGPAGEPMGPEAGSKAELPPTVSRPPLLRGLSWDSGPEEPGPRLQKVLAKLPLAEEEKRFAGKAGGKLAKAPGLKDFQIQVQPVRMQKLTKLREEHILMRNQNLVGLKLPDLSEAAEQEKGLPSELSPAIEEEESKSGLDVMPNISDVLLRKLRVHRSLPGSAPPLTEKEVENVFVQLSLAFRNDSYTLESRINQAERERNLTEENTEKELENFKASITSSASLWHHCEHRETYQKLLEDIAVLHRLAARLSSRAEVVGAVRQEKRMSKATEVMMQYVENLKRTYEKDHAELMEFKKLANQNSSRSCGPSEDGVPRTARSMSLTLGKNMPRRRVSVAVVPKFNALNLPGQTPSSSSIPSLPALSESPNGKGSLPVTSALPALLENGKTNGDPDCEASAPALTLSCLEELSQETKARMEEEAYSKGFQEGLKKTKELQDLKEEEEEQKSESPEEPEEVEETEEEEKGPRSSKLEELVHFLQVMYPKLCQHWQVIWMMAAVMLVLTVVLGLYNSYNSCAEQADGPLGRSTCSAAQRDSWWSSGLQHEQPTEQ", "length": 904 }, "evidence": [ { "id": "A0A287AMS2", "url": "https://omabrowser.org/oma/group/A0A287AMS2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMS2", "url": "https://www.uniprot.org/uniprotkb/A0A287AMS2" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMS2", "url": "https://www.uniprot.org/uniprotkb/A0A287AMS2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 505, "end_pos": 507, "annotation": "n_glycosylation_sequon" }, { "start_pos": 545, "end_pos": 547, "annotation": "n_glycosylation_sequon" }, { "start_pos": 562, "end_pos": 564, "annotation": "n_glycosylation_sequon" }, { "start_pos": 663, "end_pos": 665, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 306, 718 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 18, "end_pos": 20 }, { "start_pos": 505, "end_pos": 507 }, { "start_pos": 545, "end_pos": 547 }, { "start_pos": 562, "end_pos": 564 }, { "start_pos": 663, "end_pos": 665 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AMT0-1", "uniprot_ac": "A0A287AMT0", "uniprot_id": "A0A287AMT0_PIG", "mass": { "chemical_mass": 212909.0, "monoisotopic_mass": 212909.0 }, "refseq": {}, "gene_names": [ { "name": "VWA8", "type": "recommended", "evidence": [ { "id": "A0A287AMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT0" } ] } ], "protein_names": [ { "name": "von Willebrand factor A domain-containing protein 8", "type": "recommended", "evidence": [ { "id": "A0A287AMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Exhibits ATPase activity in vitro.", "evidence": [ { "database": "UniProtKB", "id": "I3LJL2", "url": "https://www.uniprot.org/uniprotkb/I3LJL2#function" }, { "database": "UniProtKB", "id": "ARBA00055988", "url": "https://www.uniprot.org/uniprotkb/ARBA00055988#function" }, { "database": "UniProtKB", "id": "A0A287B0R0", "url": "https://www.uniprot.org/uniprotkb/A0A287B0R0#function" }, { "database": "UniProtKB", "id": "A0A287AMT0", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT0#function" }, { "database": "UniProtKB", "id": "A0A5G2QA49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA49#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AMT0", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VWA8", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT0", "locus": { "chromosome": "11", "start_pos": 25457134, "end_pos": 25064771, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000029837", "url": "https://www.ensembl.org/id/ENSSSCG00000029837" } ] } } ], "crossref": [ { "id": "ENSSSCG00000029837", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029837", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011704", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011704", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039891", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039891", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GTHIVHP", "url": "https://omabrowser.org/oma/group/GTHIVHP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21610", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21610", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21610:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21610:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07728", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07728", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AMT0", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0R0", "url": "https://www.uniprot.org/uniprotkb/A0A287B0R0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0R0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0R0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QA49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QA49-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA49-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LJL2", "url": "https://www.uniprot.org/uniprotkb/I3LJL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LJL2-1", "url": "https://www.uniprot.org/uniprotkb/I3LJL2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQSRLLLLGAPGGRGSPAARRVRLLLRQVFWGGPGSDARRLDVRLLHAGAGADKGDTVNIGDVCYRLKTPKSPELVPQNYISDSVAQSVVQHLRWIMQKDLLGQDVFLIGPPGPLRRSIAMQYLELTKREVEYIALSRDTTETDLKQRREIRAGTAFYIDQCAVRAATEGRTLVLEGLEKAERNVLPVLNNLLENREMQLEDGRFLMSAERYDKLLQDHTKTELDAWKIVRVSENFRVIALGLPVPRYSGNPLDPPLRSRFQARDIYYLPFKDQLKLLYSIGSNVPAEKVSQLLSFATTLCSQESSTLGLPDFPLDSLPAAVQILDSFPMMSIKHAIQWLYPYGILLGPEGKMAVEGVLKRFELQDSRSSVLPEEVVRVERMPENQGFQALVTLRIAGKEVTIKVPAGTRPFSQPCASDHFIQTLSHKQLLAEMMQSHMVKDMCLIGGKGCGKTVVAKNFADTLGYNIEPIMLYQDMTARDLLQQRYTLPSGDTAWRSSPLVNAALEGKLVLLDGIHRVNAGTLAVLQRLIHDRELSLYDGSRLLREDRYMRLKEELQMSDEQLQKRSIFPIHPSFRIIALAEPPVIGSTTQQWLGPEFLTMFFFHYMKPLVKSEEIQVIKEMVPSIPQEALDKLLSFTHKLRETQDPTAQSLAASLSTRQLLRISRRLAQYPNENLHSAVTKACLARFLPSLARLALEKNLADAAIEISTDKNLEPELEDYKCEVTSGSLKIGAVSAPIYNAHEKMKVPDVLFYDNIQGVGKNKIVDRFLHLLNRPREYIQLHRDTTVQSLTLQPSVKDGLIVYEDSPLVKAVKLGHVLVIDEADKAPTNVTCILKTLVENGEMILADGRRIVANSANVNGRENVVLIHPDFRMIVLANRPGFPFLGNDFFGTLGDIFSCHAVDNPKPHSELEMLRQYGPNVPEPILQKLVAAFGELRNLADQGTINYPYSTREVVNIVRHLQKFPTEGLSSVVRNVFDFDSYNNDMREILINTLHKHGIPIGAKPTSVQLAKELPLPEQTFMGYWTIGQSRNGMQKLLCPTETHHIDIKGPALINIQEYPIDRHEERSQTFTEECASWRLPLDEINLICDVATSHENEEKTLYVVACNPVSLYFMNMAGTSGYFVDLFDIFPRTASGVWQPFVTVAPLGNPLKGQVILHEQQSNIILLLDTTSQALRRLILPSQEFTSKKTSWWSKEEAETYKMCKEFSHKNWLVFYKGKGNSLTVLDVLEGRTHTISLPINLQTVFLVAEDKWLLVESETNRKYLLTKPAHIESAVSGVCQLYVLKEEPPSTGFGVTQETDFSIPHKISSDQLSSENLSSAVGQKIASPNRILSDENSYATVVVGFPDLMSPSEVYSWKRPSSLHNSRVTDSTFYGGKRKSGTPKQSNCVTLLDTNQIVRILPPGEVPLKDIYPKDVTPPQTAGYLEVTDLQSKKLRYIPIPRSESLSPYTAWLSTISDTDALLAEWGQGGVVTVDMGGCIRLWETGLEHLQRSLMEWRNMIGQESDRPMQITINRESGEDVSSPKHGKVDPDNVPHIGGNTWAGGTGGRDTAGLGGKGGPYRLDAGHTVYQVSEAEKDAVPEEVKRAAREMGQKAFQQRLKEIQMSEYDAETYETFSGAVRRQVHSLRIILDNLQAKGKERQWLRHQATGELDDAKIIDGLTGEKAIYKRRGELEPQVGSPQQKPKRLRLVVDVSGSMYRFNGVDGRLKRSMEAVCMVMEAFENYEEKFKYDIAGHSGDGYNIDLVPINKIPKDNKQRLEILKVSAFNYLYSVKTSTRLGKVFWSLKRVTEEATVIGMKKSSFFSFFLSCLFSFLPSFFLYFFSSFFLLGLHPWHMEVPRLGVELDLQLPACTTAHSNAGSLTHWVRPGMEAVSSWMLVRFVSAEPQREL", "length": 1894, "header": "tr|A0A287AMT0-1|A0A287AMT0_PIG Isoform 1 of von Willebrand factor A domain-containing protein 8 OS=Sus scrofa OX=9823 GN=VWA8 PE=1 SV=1 CANONICAL=A0A287AMT0-1" }, "isoforms": [ { "isoform_ac": "A0A287AMT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT0/entry#A0A287AMT0-1", "sequence": { "sequence": "MQSRLLLLGAPGGRGSPAARRVRLLLRQVFWGGPGSDARRLDVRLLHAGAGADKGDTVNIGDVCYRLKTPKSPELVPQNYISDSVAQSVVQHLRWIMQKDLLGQDVFLIGPPGPLRRSIAMQYLELTKREVEYIALSRDTTETDLKQRREIRAGTAFYIDQCAVRAATEGRTLVLEGLEKAERNVLPVLNNLLENREMQLEDGRFLMSAERYDKLLQDHTKTELDAWKIVRVSENFRVIALGLPVPRYSGNPLDPPLRSRFQARDIYYLPFKDQLKLLYSIGSNVPAEKVSQLLSFATTLCSQESSTLGLPDFPLDSLPAAVQILDSFPMMSIKHAIQWLYPYGILLGPEGKMAVEGVLKRFELQDSRSSVLPEEVVRVERMPENQGFQALVTLRIAGKEVTIKVPAGTRPFSQPCASDHFIQTLSHKQLLAEMMQSHMVKDMCLIGGKGCGKTVVAKNFADTLGYNIEPIMLYQDMTARDLLQQRYTLPSGDTAWRSSPLVNAALEGKLVLLDGIHRVNAGTLAVLQRLIHDRELSLYDGSRLLREDRYMRLKEELQMSDEQLQKRSIFPIHPSFRIIALAEPPVIGSTTQQWLGPEFLTMFFFHYMKPLVKSEEIQVIKEMVPSIPQEALDKLLSFTHKLRETQDPTAQSLAASLSTRQLLRISRRLAQYPNENLHSAVTKACLARFLPSLARLALEKNLADAAIEISTDKNLEPELEDYKCEVTSGSLKIGAVSAPIYNAHEKMKVPDVLFYDNIQGVGKNKIVDRFLHLLNRPREYIQLHRDTTVQSLTLQPSVKDGLIVYEDSPLVKAVKLGHVLVIDEADKAPTNVTCILKTLVENGEMILADGRRIVANSANVNGRENVVLIHPDFRMIVLANRPGFPFLGNDFFGTLGDIFSCHAVDNPKPHSELEMLRQYGPNVPEPILQKLVAAFGELRNLADQGTINYPYSTREVVNIVRHLQKFPTEGLSSVVRNVFDFDSYNNDMREILINTLHKHGIPIGAKPTSVQLAKELPLPEQTFMGYWTIGQSRNGMQKLLCPTETHHIDIKGPALINIQEYPIDRHEERSQTFTEECASWRLPLDEINLICDVATSHENEEKTLYVVACNPVSLYFMNMAGTSGYFVDLFDIFPRTASGVWQPFVTVAPLGNPLKGQVILHEQQSNIILLLDTTSQALRRLILPSQEFTSKKTSWWSKEEAETYKMCKEFSHKNWLVFYKGKGNSLTVLDVLEGRTHTISLPINLQTVFLVAEDKWLLVESETNRKYLLTKPAHIESAVSGVCQLYVLKEEPPSTGFGVTQETDFSIPHKISSDQLSSENLSSAVGQKIASPNRILSDENSYATVVVGFPDLMSPSEVYSWKRPSSLHNSRVTDSTFYGGKRKSGTPKQSNCVTLLDTNQIVRILPPGEVPLKDIYPKDVTPPQTAGYLEVTDLQSKKLRYIPIPRSESLSPYTAWLSTISDTDALLAEWGQGGVVTVDMGGCIRLWETGLEHLQRSLMEWRNMIGQESDRPMQITINRESGEDVSSPKHGKVDPDNVPHIGGNTWAGGTGGRDTAGLGGKGGPYRLDAGHTVYQVSEAEKDAVPEEVKRAAREMGQKAFQQRLKEIQMSEYDAETYETFSGAVRRQVHSLRIILDNLQAKGKERQWLRHQATGELDDAKIIDGLTGEKAIYKRRGELEPQVGSPQQKPKRLRLVVDVSGSMYRFNGVDGRLKRSMEAVCMVMEAFENYEEKFKYDIAGHSGDGYNIDLVPINKIPKDNKQRLEILKVSAFNYLYSVKTSTRLGKVFWSLKRVTEEATVIGMKKSSFFSFFLSCLFSFLPSFFLYFFSSFFLLGLHPWHMEVPRLGVELDLQLPACTTAHSNAGSLTHWVRPGMEAVSSWMLVRFVSAEPQREL", "length": 1894, "header": "tr|A0A287AMT0-1|A0A287AMT0_PIG Isoform 1 of von Willebrand factor A domain-containing protein 8 OS=Sus scrofa OX=9823 GN=VWA8 PE=1 SV=1 CANONICAL=A0A287AMT0-1" }, "locus": { "chromosome": "11", "start_pos": 25450664, "end_pos": 25064878, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061114.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061114.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045314.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045314.1" } ] } }, { "isoform_ac": "A0A287B0R0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT0/entry#A0A287B0R0-1", "sequence": { "sequence": "MQSRLLLLGAPGGRGSPAARRVRLLLRQVFWGGPGSDARRLDVRLLHAGAGADKGDTVNIGDVCYRLKTPKSPELVPQNYISDSVAQSVVQHLRWIMQKDLLGQDVFLIGPPGPLRRSIAMQYLELTKREVEYIALSRDTTETDLKQRREIRAGTAFYIDQCAVRAATEGRTLVLEGLEKAERNVLPVLNNLLENREMQLEDGRFLMSAERYDKLLQDHTKTELDAWKIVRVSENFRVIALGLPVPRYSGNPLDPPLRSRFQARDIYYLPFKDQLKLLYSIGSNVPAEKVSQLLSFATTLCSQESSTLGLPDFPLDSLPAAVQILDSFPMMSIKHAIQWLYPYGILLGPEGKMAVEGVLKRFELQDSRSSVLPEEVVRVERMPENQGFQALVTLRIAGKEVTIKVPAGTRPFSQPCASDHFIQTLSHKQLLAEMMQSHMVKDMCLIGGKGCGKTVVAKNFADTLGYNIEPIMLYQDMTARDLLQQRYTLPSGDTAWRSSPLVNAALEGKLVLLDGIHRVNAGTLAVLQRSIFPIHPSFRIIALAEPPVIGSTTQQWLGPEFLTMFFFHYMKPLVKSEEIQVIKEMVPSIPQEALDKLLSFTHKLRETQDPTAQSLAASLSTRQLLRISRRLAQYPNENLHSAVTKACLARFLPSLARLALEKNLADAAIEISTDKNLEPELEDYKCEVTSGSLKIGAVSAPIYNAHEKMKVPDVLFYDNIQHMMVMEDMLKDFLLGEHLLLVGNQGVGKNKIVDRFLHLLNRPREYIQLHRDTTVQSLTLQPSVKDGLIVYEDSPLVKAVKLGHVLVIDEADKAPTNVTCILKTLVENGEMILADGRRIVANSANVNGRENVVLIHPDFRMIVLANRPGFPFLGNDFFGTLGDIFSCHAVDNPKPHSELEMLRQYGPNVPEPILQKLVAAFGELRNLADQGTINYPYSTREVVNIVRHLQKFPTEGLSSVVRNVFDFDSYNNDMREILINTLHKHGIPIGAKPTSVQLAKELPLPEQTFMGYWTIGQSRNGMQKLLCPTETHHIDIKGPALINIQEYPIDRHEERSQTFTEECASWRLPLDEINLICDVATSHENEEKTLYVVACNPVSLYFMNMAGTSGYFVDLFDIFPRTASGVWQPFVTVAPLGNPLKGQVILHEQQSNIILLLDTTSQALRRLILPSQEFTSKKTSWWSKEEAETYKMCKEFSHKNWLVFYKGKGNSLTVLDVLEGRTHTISLPINLQTVFLVAEDKWLLVESETNRKYLLTKPAHIESAVSGVCQLYVLKEEPPSTGFGVTQETDFSIPHKISSDQLSSENLSSAVGQKIASPNRILSDENSYATVVVGFPDLMSPSEVYSWKRPSSLHNSRVTDSTFYGGKRKSGTPKQSNCVTLLDTNQIVRILPPGEVPLKDIYPKDVTPPQTAGYLEVTDLQSKKLRYIPIPRSESLSPYTAWLSTISDTDALLAEWGQGGVVTVDMGGCIRLWETGLEHLQRSLMEWRNMIGQESDRPMQITINRESGEDVSSPKHGKVDPDNVPHIGGNTWAGGTGGRDTAGLGGKGGPYRLDAGHTVYQVSEAEKDAVPEEVKRAAREMGQKAFQQRLKEIQMSEYDAETYETFSGAVRRQVHSLRIILDNLQAKGKERQWLRHQATGELDDAKIIDGLTGEKAIYKRRGELEPQVGSPQQKPKRLRLVVDVSGSMYRFNGVDGRLKRSMEAVCMVMEAFENYEEKFKYDIAGHSGDGYNIDLVPINKIPKDNKQRLEILKVSAFNYLYSVKTSTRLGKVFWSLKRVTEEATVIGMKKSSFFSFFLSCLFSFLPSFFLYFFSSFFLLGLHPWHMEVPRLGVELDLQLPACTTAHSNAGSLTHWVRPGMEAVSSWMLVRFVSAEPQREL", "length": 1880, "header": "tr|A0A287B0R0-1|A0A287B0R0_PIG Computationally mapped isoform of von Willebrand factor A domain-containing protein 8 OS=Sus scrofa OX=9823 GN=VWA8 PE=1 SV=1 CANONICAL=A0A287AMT0-1" }, "locus": { "chromosome": "11", "start_pos": 25450664, "end_pos": 25064878, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055668.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055668.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050004.1", "url": "https://www.ensembl.org/id/ENSSSCP00000050004.1" } ] } }, { "isoform_ac": "A0A5G2QA49-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT0/entry#A0A5G2QA49-1", "sequence": { "sequence": "MQSRLLLLGAPGGRGSPAARRVRLLLRQVFWGGPGSDARRLDVRLLHAGAGADKGDTVNIGDVCYRLKTPKSPELVPQNYISDSVAQSVVQHLRWIMQKDLLGQDVFLIGPPGPLRRSIAMQYLELTKREVEYIALSRDTTETDLKQRREIRAGTAFYIDQCAVRAATEGRTLVLEGLEKAERNVLPVLNNLLENREMQLEDGRFLMSAERYDKLLQDHTKTELDAWKIVRVSENFRVIALGLPVPRYSGNPLDPPLRSRFQARDIYYLPFKDQLKLLYSIGSNVPAEKVSQLLSFATTLCSQESSTLGLPDFPLDSLPAAVQILDSFPMMSIKHAIQWLYPYGILLGPEGKMAVEGVLKRFELQDSRSSVLPEEVVRVERMPENQGFQALVTLRIAGKEVTIKVPAGTRPFSQPCASDHFIQTLSHKQLLAEMMQSHMVKDMCLIGGKGCGKTVVAKNFADTLGYNIEPIMLYQDMTARDLLQQRYTLPSGDTAWRSSPLVNAALEGKLVLLDGIHRVNAGTLAVLQRLIHDRELSLYDGSRLLREDRYMRLKEELQMSDEQLQKRSIFPIHPSFRIIALAEPPVIGSTTQQWLGPEFLTMFFFHYMKPLVKSEEIQVIKEMVPSIPQEALDKLLSFTHKLRETQDPTAQSLAASLSTRQLLRISRRLAQYPNENLHSAVTKACLARFLPSLARLALEKNLADAAIEISTDKNLEPELEDYKCEVTSGSLKIGAVSAPIYNAHEKMKVPDVLFYDNIQHMMVMEDMLKDFLLGEHLLLVGNQGVGKNKIVDRFLHLLNRPREYIQLHRDTTVQSLTLQPSVKDGLIVYEDSPLVKAVKLGHVLVIDEADKAPTNVTCILKTLVENGEMILADGRRIVANSANVNGRENVVLIHPDFRMIVLANRPGFPFLGNDFFGTLGDIFSCHAVDNPKPHSELEMLRQYGPNVPEPILQKLVAAFGELRNLADQGTINYPYSTREVVNIVRHLQKFPTEGLSSVVRNVFDFDSYNNDMREILINTLHKHGIPIGAKPTSVQLAKELPLPEQTFMGYWTIGQSRNGMQKLLCPTETHHIDIKGPALINIQEYPIDRHEERSQTFTEECASWRLPLDEINLICDVATSHENEEKTLYVVACNPVSLYFMNMAGTSGYFVDLFDIFPRTASGVWQPFVTVAPLGNPLKGQVILHEQQSNIILLLDTTSQALRRLILPSQEFTSKKTSWWSKEEAETYKMCKEFSHKNWLVFYKGKGNSLTVLDVLEGRTHTISLPINLQTVFLVAEDKWLLVESETNRKYLLTKPAHIESAVSGVCQLYVLKEEPPSTGFGVTQETDFSIPHKISSDQLSSENLSSAVGQKIASPNRILSDENSYATVVVGFPDLMSPSEVYSWKRPSSLHNSRVTDSTFYGGKRKSGTPKQSNCVTLLDTNQIVRILPPGEVPLKDIYPKDVTPPQTAGYLEVTDLQSKKLRYIPIPRSESLSPYTAWLSTISDTDALLAEWGQGGVVTVDMGGCIRLWETGLEHLQRSLMEWRNMIGQESDRPMQITINRESGEDVSSPKHGKVDPDNVPHIGGNTWAGGTGGRDTAGLGGKGGPYRLDAGHTVYQVSEAEKDAVPEEVKRAAREMGQKAFQQRLKEIQMSEYDAETYETFSGAVRRQVHSLRIILDNLQAKGKERQWLRHQATGELDDAKIIDGLTGEKAIYKRRGELEPQVDVP", "length": 1709, "header": "tr|A0A5G2QA49-1|A0A287AMT0_PIG Computationally mapped isoform of von Willebrand factor A domain-containing protein 8 OS=Sus scrofa OX=9823 GN=VWA8 PE=1 SV=1 CANONICAL=A0A287AMT0-1" }, "locus": { "chromosome": "11", "start_pos": 25434846, "end_pos": 25064878, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067807.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067807.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060860.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060860.1" } ] } }, { "isoform_ac": "I3LJL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT0/entry#I3LJL2-1", "sequence": { "sequence": "MQSRLLLLGAPGGRGSPAARRVRLLLRQVFWGGPGSDARRLDVRLLHAGAGADKGDTVNIGDVCYRLKTPKSPELVPQNYISDSVAQSVVQHLRWIMQKDLLGQDVFLIGPPGPLRRSIAMQYLELTKREVEYIALSRDTTETDLKQRREIRAGTAFYIDQCAVRAATEGRTLVLEGLEKAERNVLPVLNNLLENREMQLEDGRFLMSAERYDKLLQDHTKTELDAWKIVRVSENFRVIALGLPVPRYSGNPLDPPLRSRFQARDIYYLPFKDQLKLLYSIGSNVPAEKVSQLLSFATTLCSQESSTLGLPDFPLDSLPAAVQILDSFPMMSIKHAIQWLYPYGILLGPEGKMAVEGVLKRFELQDSRSSVLPEEVVRVERMPENQGFQALVTLRIAGKEVTIKVPAGTRPFSQPCASDHFIQTLSHKQLLAEMMQSHMVKDMCLIGGKGCGKTVVAKNFADTLGYNIEPIMLYQDMTARDLLQQRYTLPSGDTAWRSSPLVNAALEGKLVLLDGIHRVNAGTLAVLQRLIHDRELSLYDGSRLLREDRYMRLKEELQMSDEQLQKRSIFPIHPSFRIIALAEPPVIGSTTQQWLGPEFLTMFFFHYMKPLVKSEEIQVIKEMVPSIPQEALDKLLSFTHKLRETQDPTAQSLAASLSTRQLLRISRRLAQYPNENLHSAVTKACLARFLPSLARLALEKNLADAAIEISTDKNLEPELEDYKCEVTSGSLKIGAVSAPIYNAHEKMKVPDVLFYDNIQHMMVMEDMLKDFLLGEHLLLVGNQGVGKNKIVDRFLHLLNRPREYIQLHRDTTVQSLTLQPSVKDGLIVYEDSPLVKAVKLGHVLVIDEADKAPTNVTCILKTLVENGEMILADGRRIVANSANVNGRENVVLIHPDFRMIVLANRPGFPFLGNDFFGTLGDIFSCHAVDNPKPHSELEMLRQYGPNVPEPILQKLVAAFGELRNLADQGTINYPYSTREVVNIVRHLQKFPTEGLSSVVRNVFDFDSYNNDMREILINTLHKHGIPIGAKPTSVQLAKELPLPEQTFMGYWTIGQSRNGMQKLLCPTETHHIDIKGPALINIQEYPIDRHEERSQTFTEECASWRLPLDEINLICDVATSHENEEKTLYVVACNPVSLYFMNMAGTSGYFVDLFDIFPRTASGVWQPFVTVAPLGNPLKGQVILHEQQSNIILLLDTTSQALRRLILPSQEFTSKKTSWWSKEEAETYKMCKEFSHKNWLVFYKGKGNSLTVLDVLEGRTHTISLPINLQTVFLVAEDKWLLVESETNRKYLLTKPAHIESAVSGVCQLYVLKEEPPSTGFGVTQETDFSIPHKISSDQLSSENLSSAVGQKIASPNRILSDENSYATVVVGFPDLMSPSEVYSWKRPSSLHNSRVTDSTFYGGKRKSGTPKQSNCVTLLDTNQIVRILPPGEVPLKDIYPKDVTPPQTAGYLEVTDLQSKKLRYIPIPRSESLSPYTAWLSTISDTDALLAEWGQGGVVTVDMGGCIRLWETGLEHLQRSLMEWRNMIGQESDRPMQITINRESGEDVSSPKHGKVDPDNVPHIGGNTWAGGTGGRDTAGLGGKGGPYRLDAGHTVYQVSEAEKDAVPEEVKRAAREMGQKAFQQRLKEIQMSEYDAETYETFSGAVRRQVHSLRIILDNLQAKGKERQWLRHQATGELDDAKIIDGLTGEKAIYKRRGELEPQVGSPQQKPKRLRLVVDVSGSMYRFNGVDGRLKRSMEAVCMVMEAFENYEEKFKYDIAGHSGDGYNIDLVPINKIPKDNKQRLEILKTMHAHAQFCMSGDHTLEGTNMPSRTSSKRKLMSTLS", "length": 1827, "header": "tr|I3LJL2-1|A0A287AMT0_PIG Computationally mapped isoform of von Willebrand factor A domain-containing protein 8 OS=Sus scrofa OX=9823 GN=VWA8 PE=1 SV=2 CANONICAL=A0A287AMT0-1" }, "locus": { "chromosome": "11", "start_pos": 25452637, "end_pos": 25064878, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026550.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026550.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024273.2", "url": "https://www.ensembl.org/id/ENSSSCP00000024273.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA49" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K3W1-1", "protein_name": "von Willebrand factor A domain-containing protein 8", "gene_name": "Vwa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQSRLLLLGVPGGLGDVASRRVRLLLRQVLRGRPGGGQQRLEVRLMHAGVTDSGETVNIGDVSYKLKTPKNPELVPQNYIAASPSQSVVQHLRWIMQKDLLGQDVFLIGPPGPLRRSVAMQYLELTKQEVEYIALSRDTTETDLKQRREIRAGTAFYIDQCAVRAATEGRTLVLEGLEKAERNVLPVLNNLLENREMQLEDGRFLMSAERYDKLLRDHTKEELDAWKIVRVSENFRVIALGLPVPRYSGNPLDPPLRSRFQARDIYFLPFQDQLKLLYSVGANVSAEKISQLLSFATTLCSQESSTLGLPDFPLDSLPEAVQILDSFPMMPIEHAIRWMYPYTVLLGHEGKMAVEGVLKRFELQGSGHSLLPKEIVRVERMTDSHISHAHVTIRVSGKEVTIKVPAGTRAVNQPCAPDRFIQTVSHKQLLAEMMQSHMVKDICLIGGKGCGKTVMAKNFAALLGYSIEPIMLYQDMTARDLLQQRYTLPNGDTAWRSSPLVSAAREGKLVLLDGIHRVNAGTLAVLQRLIHDRELSLYDGSRLLREDRYLCLKERLQLTDEQLQNRSIFPIHPSFRIIALAEPPVVGSTTQQWLGPEFLTMFFFHHMKPLVKSEELQVIKEMVPNVPQEALEKLLSVTHKLRETQDPTAQSLAASLSTRQLLRISRRLSQYPSENLHDAITKACLSRFLPSLAQSALEKNLADAAIEINADSSLEPELENYKCEVVAGSLKIGTVSAPVHNAHEKMKVPDVLFYDNVQHMVVMEDMLKDFVLGEHLLLVGNQGVGKNKIVDRFLHLLNRPREYIQLHRDTTVQSLTLQPSVKDGLIVYEDSPLVKAVKLGHILVVDEADKAPTNVTCILKTLVENGEMILADGRRIVADAASVDGRENAIVVHPDFRMVVLANRPGFPFLGNDFFGTLGDIFSCHAIDNPKPHSELEMLKQYGPNVPVPVLEKLVAAFGELRNLADQGIINYPYSTREVVNIVKHLEKFPTEGLSSVVRNVFDFDSYNNDMREILMNTLHKYGIPIGAKPTNVQLAKEFPLPEKTFMGYWIIGQTGNGMQKVLCPAETHRIDIKGPVLVNIEKYPIEKHESRFLNFTEECTSWRFPVDEVNLISDIAVSHENGEHTLYVATCNPISLYFMNMTGENGFFVDFFDIFPRMASGSWRPFVTVAPLGSPLRGQVVLHEEQSNVVLLLDTTGRAIHRLVLPTEESTSKKSSWWNKEEGETYRMCKEFSHKNWVVFYRQTGNSLTVLDVLEGLTHTISLPINLRTVFLVAEDKWLLVENKTNQKCLLTKPAHIGAEDTGACQLYMLKEELPSTGFGVTQETEFYVPHKVSSDQLSSENLTSAVGQKIASPNRILSDEKSHATIVVGFPDLMSPCEVYSWKRSSSLGKPSVTNITMYTGKRTSVTPRHNNCVTLTHTNQVVRILPAGEVPLKDIYPKDVTPPQTAGYIEVTDLQAKKLRYIPVPSAESLSPYTAWLSAISDTDALLAEWDKSSVVTVDMGGCVRLWETGLERLQQSLMEWRNMIGQDSDKHMQITIERDSNEDVSEPKHGKEDPDNMPHVGGNTWAGGTGGRDTAGLGGKGGPYRLDAGHPVYQVSEVEKDAVPEDIKRAAREMAQRAFQQRLKEIQMSEYDAATYERFSRAVQRQVHALRVILDNLQAKGKERQWLRHQATGELDDAKIIDGLAGEKAIYKRRGDLEPQLGSPQQKPKRLRLVVDVSGSMYRFNGVDRRLERSMEAVCMVMEAFENYEEKFKYDIAGHSGDGYNIKLVPVNKIPKNNKQRLEILKTMHAHSQFCMSGDHTLEGTEHAIKDITTEEADEYFVIILSDANLSRYGINPARFAQILTSNPQVNAFAIFIGSLGDQAARLQRTLPAGRSFIAMDTKKIPQILQQIFTSTMLSSI", "length": 1905 }, "evidence": [ { "id": "A0A287AMT0", "url": "https://omabrowser.org/oma/group/A0A287AMT0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0XCZ9-1", "protein_name": "von Willebrand factor A domain-containing protein 8", "gene_name": "VWA8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSRVLCLSGGAGAPAARRVRLLLRQVLAGGPAAARPGRLEVRSLHGSGDTVTIGDVSFKLKTPKNPELVPQNYMTDSLAQSVVQHLRWIMQKDLLGQDVFLIGPPGPLRRSIAMQYLELTKREVEYIALSRDTTETDLKQRREIRDGSAFYLDQCAVRAATEGRILVLEGLEKAERNVLPVLNNLLENREMQLEDGRFLMSAERYDKLLQDHTKSELDAWRIVRVSEDFRVIALGLPVPKYSGNPLDPPLRSRFQARDIYHLPFKDHLQLLYSIGSNISAERISQILSFATTLCSQESSTLGLPDFPVDSLSAAVQILDSFPMMSVQHVIDRLYPYNIFLGKEGRTAVKDALKRFELQDSNKQLRPKRITKVESVPGNKPFKADVTVQIGESEVTFQVPAGTGLLKQHSQSDKFIRTSSHDQLLAEMMQSHMVKDMCLIGGKGCGKTVIAKEFADILGYSIEPIMLYQDMTARDLLQQRYTLPNGDTAWRPSPLVTAALEGKLVILDGIHRINPGTLAVLQRLIHDRELTLYDGTRLLREDRYQNLKEELKIPDEKLQERSIFPIHPSFRIVVLAEPPVIGSSTQQWLGPEFLTLFLFHHVRSLSKNEEIQVIKEMIPNVPSAAVEQLLSLTHKLRETNDTTAQSLASSLSTRQLLRICRRLSQHPDESLYYAVNKACLSRFLPNLARLALHKNLQDSGIETNPDNMKKLEEKDYTCEINNGILKIGSVTMPVYNPSEKMKVPDVLFYENAQHMMVMEDMLKDFLLGEHLLLVGNQGVGKNKIVDRFLHLLNRPREYLQLHRDTTVQSLTLQPSVKDGLIIYEDSPLVKAVKFGHILVVDEADKAPTNVTCILKTLVESGEMVLSDGRRIVANPAHVEGRENVIAIHPDFRMIVLANRPGFPFLGNDFFGTLGDIFSCHAVDNPKPQSELAMLRRYGPDVPERILQKLVAAFGELRSLADQGIINYPYSTREVVNIVKHLQKFPTEGLANVVRNVFDFDSYNNEMREILTSTLHKHGIPIGAKPTNVQLAKELPLPDKKFMGYWKIGQPGNAQQKLLCPTETQKIDVKGPAYLNIQGFPLERHEARSLNFTEELAYWTLPLDEVNFVCDVTVTKEEETDNVLYVTTCNPVSLYFMNVSSKNGYFVDLYDIFPRTVGHVWQPFVTVAALGNPLKGQVILHEEESNVVLLLDTNSGAIRRLLLSPDAQDSPRRTPWWSSKEETSSYRMCREFSHKNWLVFYKEKGNRLIVLDVLEGQTHTISLPINLGSVFLVAEDRWLLVESETNQKFLLMKRVHMEAEDSEACQLYALNEEPADMGFGLTTASELCVPHTVASAQLSSENLSAAVGLKISSPNRIFSDEHNYATVVIGFPDLMSPSEVYSWKRNSPLSRKHASPSDSFYYGARRKRGAAKQTNCVTLLASNQIVRILAPGDVPLKDIYPKDVAPPQAAGYLEVTDLNSKKIKYIAIPSPGSLSPYTSWLSKISDADALLAPLGKVGLVSVDMGGGVRLWETGLESLQRSLQDWRNMIGQEDGRPVQITIQRDSGLDVSSPKHGKVDPDNMPHVGGNTWAGGTGGRDTAGLGGKGGPYRLDAGHKVYQVSQAEKDAVPEEVKRAAREMGEKAFKQRLKEIQMSEYDASTYERFSGAVRRQVQSLRIILDNLQAKGKERQWMRHQAVGELDDAKIIDGLTGEKAIYKRRGELEPQPGSPQQKPKRLRLVVDVSGSMYRFNGVDGRLERSMEAVCMVLEAFENYEHKFKYDIVGHSGDGYNIALVESGKVPKNNKQRLEILKVMHAHAQFCMSGDHTLEGTEHAIREIAKEDADEYFVIVLSDANLERYGIEPSKFAQVLTTNSQVNAFAIFIGSLGDQADRLQRTLPAGRSFIAMDTKEIPQILQQIFTSTMLSSA", "length": 1905 }, "evidence": [ { "id": "A0A287AMT0", "url": "https://omabrowser.org/oma/group/A0A287AMT0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A3KMH1-1", "protein_name": "von Willebrand factor A domain-containing protein 8", "gene_name": "VWA8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQSRLLLLGAPGGHGGPASRRMRLLLRQVVQRRPGGDRQRPEVRLLHAGSGADTGDTVNIGDVSYKLKIPKNPELVPQNYISDSLAQSVVQHLRWIMQKDLLGQDVFLIGPPGPLRRSIAMQYLELTKREVEYIALSRDTTETDLKQRREIRAGTAFYIDQCAVRAATEGRTLILEGLEKAERNVLPVLNNLLENREMQLEDGRFLMSAERYDKLLRDHTKKELDSWKIVRVSENFRVIALGLPVPRYSGNPLDPPLRSRFQARDIYYLPFKDQLKLLYSIGANVSAEKVSQLLSFATTLCSQESSTLGLPDFPLDSLAAAVQILDSFPMMPIKHAIQWLYPYSILLGHEGKMAVEGVLKRFELQDSGSSLLPKEIVKVEKMMENHVSQASVTIRIADKEVTIKVPAGTRLLSQPCASDRFIQTLSHKQLQAEMMQSHMVKDICLIGGKGCGKTVIAKNFADTLGYNIEPIMLYQDMTARDLLQQRYTLPNGDTAWRSSPLVNAALEGKLVLLDGIHRVNAGTLAVLQRLIHDRELSLYDGSRLLREDRYMRLKEELQLSDEQLQKRSIFPIHPSFRIIALAEPPVIGSTAHQWLGPEFLTMFFFHYMKPLVKSEEIQVIKEKVPNVPQEALDKLLSFTHKLRETQDPTAQSLAASLSTRQLLRISRRLSQYPNENLHSAVTKACLSRFLPSLARSALEKNLADATIEINTDDNLEPELKDYKCEVTSGTLRIGAVSAPIYNAHEKMKVPDVLFYDNIQHVIVMEDMLKDFLLGEHLLLVGNQGVGKNKIVDRFLHLLNRPREYIQLHRDTTVQTLTLQPSVKDGLIVYEDSPLVKAVKLGHILVVDEADKAPTNVTCILKTLVENGEMILADGRRIVANSANVNGRENVVVIHPDFRMIVLANRPGFPFLGNDFFGTLGDIFSCHAVDNPKPHSELEMLRQYGPNVPEPILQKLVAAFGELRSLADQGIINYPYSTREVVNIVKHLQKFPTEGLSSVVRNVFDFDSYNNDMREILINTLHKYGIPIGAKPTSVQLAKELTLPEQTFMGYWTIGQARSGMQKLLCPVETHHIDIKGPALINIQEYPIERHEERSLNFTEECASWRIPLDEINIICDIATSHENEQNTLYVVTCNPASLYFMNMTGKSGFFVDFFDIFPRTANGVWHPFVTVAPLGSPLKGQVVLHEQQSNVILLLDTTGRALHRLILPSEKFTSKKPFWWNKEEAETYKMCKEFSHKNWLVFYKEKGNSLTVLDVLEGRTHTISLPINLKTVFLVAEDKWLLVESKTNQKYLLTKPAHIESEGSGVCQLYVLKEEPPSTGFGVTQETEFSIPHKISSDQLSSEHLSSAVEQKIASPNRILSDEKNYATIVVGFPDLMSPSEVYSWKRPSSLHKRSGTDTSFYRGKKKRGTPKQSNCVTLLDTNQVVRILPPGEVPLKDIYPKDVTPPQTSGYIEVTDLQSKKLRYIPIPRSESLSPYTTWLSTISDTDALLAEWDKSGVVTVDMGGHIRLWETGLERLQRSLMEWRNMIGQDDRNMQITINRDSGEDVSSPKHGKEDPDNMPHVGGNTWAGGTGGRDTAGLGGKGGPYRLDAGHTVYQVSQAEKDAVPEEVKRAAREMGQRAFQQRLKEIQMSEYDAATYERFSGAVRRQVHSLRIILDNLQAKGKERQWLRHQATGELDDAKIIDGLTGEKAIYKRRGELEPQLGSPQQKPKRLRLVVDVSGSMYRFNRMDGRLERTMEAVCMVMEAFENYEEKFQYDIVGHSGDGYNIGLVPMNKIPKDNKQRLEILKTMHAHSQFCMSGDHTLEGTEHAIKEIVKEEADEYFVIVLSDANLSRYGIHPAKFAQILTRDPQVNAFAIFIGSLGDQATRLQRTLPAGRSFVAMDTKDIPQILQQIFTSTMLSSV", "length": 1905 }, "evidence": [ { "id": "A0A287AMT0", "url": "https://omabrowser.org/oma/group/A0A287AMT0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B0R0T1-1", "protein_name": "von Willebrand factor A domain-containing protein 8", "gene_name": "vwa8", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MHSRILFKGTAAAVAARRIRHILGPLMSKEGWNCSAHEVKLLNTSSGDTVKIGEISYVLKTPKNPELVPVNHMMEALPQMVTQHLRWIMQKDLLGQDVFLIGPPGPLRRSIAMQYLELTKREVEYVALSRDTTETDLKQRREIRSGTAFYIDQCAVRAATEGRILVLEGLEKAERNVLPVLNNLLENREMQLEDGRFLMSAHRYDKLLEEHTKEELDAWKIVRVSEDFRVIALGLPVPRYKGNPLDPPLRSRFQARDIYYLPFKDQLEHLYRIGANVSAERVSQLLSFATTLCSQESASLSLPDFPVDNLPSALTVLNLFPMLSVQQLVQRLYPYEAMLGKEGRTAVEGVLNRFELTDGSTKPSPTAVVNIEPVNGGQAEQAAVTLNITNQKITFQVPSGTRPIRPPNSSPTFINTPTHERLLAEMMQSHLVKDICLIGAKGCGKSVIAREFAEMLGYSIEPVMLYQDMTARDLLQQRYTLPNGDTAWRASPLVTAAQEGKLVLLDGIHRVNLGTLAVLSRLLHDRELDLYDGTRLLRFDRYQALKEELQLTDQQLQDRSIFPIHPSFRIIALAEPPVIGSTTQQWLNPEILTMFLFHTIKPLAKAEETAVLQGMIPNVPGEAVEQLQHLTHSLRKSNDPTALSLASSLSTRQLLRICRRLSQYPQESVAHAVHKACLSRFLPSLARSSLEKSLANCSIEDHPDPASEQKQLYTCTVKDGLLTIGNVSAPVYSPDEKMKVPDVLFYENVQHMMVMQDMLKDFLLGEHLLLVGNQGVGKNKIVDRFLHLMNRPREYLQLHRDTTVQTLTLQPSVRDGIIIYEDSPLVKAVKMGHILVIDEADKAPTNVTCILKALVESGEMILADGRRIVSDALEAAGRPNAIPMHPDFRMIVLANRPGFPFLGNDFFGALGDIFSCHAVDNPKPQAEFAMLKQYGPDVPDAVLQKLVAAFGELRAMADQGTITYPYSTREVVNIVKHLQKFPDEGLANVVRNVFDFDSYNKDMREVLISALHKHGIPIGAKPTSVHLAKELPLPDCKMTGYWTISQGGNTRRKLLCPTETHRIDIKGPVFLRVQSYPSKRHESRSLSFTEEQAHWQIPMNEVNIVCDVTTAKDSIYVATCNPVSLYAMKEKGDSVQCIELYDIFPRTISGVWQPFVSVAALGNPLQDQVVLHEEQGNTVLHLDLVTGAVRRLILSQDKQDEAPRKTSNWWNSKESQPGYKMCKEFAHKNWLLFYKENGNQLDVVDVLEGQVHTIHLPINLKAVFLVAEDRWLLVESKTDRKFLLTKPMHMGAEETGVCQLHAISEDAVSSGFGNNSGMEAVSPQEVSSDQLSNENLSAALGQKIVSPNRILCDTNTYANVIVGFPDLMSPNELYSFRRSLPITESRRPDMFFGSSKRTGPAKRVNCVCLLDANQVVRALPPTQVPLAEVYPKDVTPPMSAAYLEVTDLNSKRLKYIPVPRSNSMSPYTVWISKVSDTDVVMAPLGSGGVVTVDMGGYVRLWETGLDHLQRSLLEWRNMIGSEDGRPVQITIERDSGLDVSSPKHGKIDAKNAPHVGGNQWAGGTGGRDTAGLGGKGGPYRLDAGHKVYQISQAEKDAVPDEVKRAARDMAEQAFKQRLKEIEMSEYDASTYDRFSGAVRRQVQSLRIILDSLQAKGKERQWLRNQALGELDDAKIIDGLTGEKSIYKRRGELEPELGSPQQKPKRLRVLADVSGSMYRFNGVDGRLERSMEAVCMVMEALESYEHKFKYDITGHSGDGFDIELVRCDKVPKNNKERLKVLKTMHAHSQFCMSGDYTLEGTEHAIRELAHEEADEHFVIVLSDANLERYGISPDRFARVLTSNPQVNAFAIFIGSLGDQADRLQKTLPAGRSFVAMDTKEIPQILQQIFTSTMLSSA", "length": 1896 }, "evidence": [ { "id": "A0A287AMT0", "url": "https://omabrowser.org/oma/group/A0A287AMT0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3HGT4-1", "protein_name": "von Willebrand factor A domain-containing protein 8", "gene_name": "Vwa8", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MQSRLLLLGVPGGLGDVASRRVRLLLRQVVRGRPGGDRQRLEVRLMQTAGTDSGDTVNIGDVSYKLKTPKNPELVPQNYISESPAQSIVQHLRWIMQKDLLGQDIFLIGPPGPLRRSVAMQYLELTKREVEYIALSRDTTETDLKQRREIRAGTAFYIDQCAVRAATEGRTLVLEGLEKAERNVLPVLNNLLENREMQLEDGRFLMSAERYDKLLQDHTKEELDAWKIVRVSEHFRVIALGLPVPKYPGNPLDPPLRSRFQARDIYFLPFRDQLNLLYSVGANVSAEKVSQLLSFATTLCSQESSTLGLPDFPLDSLPAAVQILNSFPMMSIEHAIQWLYPYTILLGQEGKMAVEGVLKRFELQGSGNSLLPKEIIRVERMTDNCISQAHVTIQVAGKEVTIKVPAGTRAINQPFAPDCFIQTPSHKQLLAEMMQSHMVKDLCVIGGKGCGKTVIAKNFADILGYNIEPIMLYQDMTARDLLQQRYTLPNGDTAWRSSPLVNAAREGKLVLLDGIHRVNAGTLAVLQRLIHDRELSLYDGSRLLRQDRYLSLKEGLQLTDEQLQERSIFPIHPSFRIIALAEPPVIGSTTQQWLGPEFLTMFFFHHMKPLVKSEEIQVIKEMVPSVPQEALEKLLSVTHKLRETQDPTAQSLAASLSTRQLLRIARRLSQYPNENLHDAITKACLSRFLPSLARSALEKNLADAAIEINTNDSLEPELESYKCEIVSGSLRIGAVSAPVYNAQEKMKVPDVLFYDNVQHMIVMEDMLKDFVLGEHLLLVGNQGVGKNKIMDRFLHLLNRPREYIQLHRDTTVQTLTLQPSVKDGLIVYEDSPLVKAVKMGHILVVDEADKAPTNVTCILKTLVENGEMILADGRRIVAHAANVDGRENVIVIHPDFRMVVLANRPGFPFLGNDFFGTLGDIFSCHAIDNPKPHSELEMLKQYGPNVPEAILQKLVAAFGELRNLADQGIINYPYSTREVVNIVKHLQKFPTEGLASVVRNVFDFDSYNNDMREILMNTLHKYGIPIGAKPTNVHLAKELPLPEQTFMGYWITGQAGNGMQKILCPVQTSHIDIKGPVLANIEEYPIEKHEARFLNFTEEYVSWRFPLDEVNLICDIAVSHENGEHTLYVAACNPISLYFMNLTGKNGFFVDFFDIFPRMISGAWRPFVTVAPLGSPLRGQVVLHEEQSNAILLLDTTGRAIRHLILPVDEFASKKSSWWNKEGGETYRMCKEFSHKNWLVFYKQTGNTLTVLDVLEGLTHTISLPINLKAVFLVAEDKWLLVENKTNQKYLLTKPAHIGSEDTGACQLYMLKEELPSTGFGVTQETEFCIPHKVSSDQLSSENLSSAVGQKIASPNRVLSDENSYATVVVGFPDLMSPSEVYSWKRPSSLEKPNVTNTGIYGGKRTNATPRHKNCVTLTHTNQVVRILPAGEVPLKDIFPKGVTPPQTAGYIEVTDLQAKKLRYIPVPSAESLSPYTAWISAISDTDALLAEWDKSGIVTVDMGGRVRLWETGLDRLQQSLMEWRNMIGQDSDKPVQITIERDSNEDVSDPKHGKEDPDNMPHVGGNTWAGGTGGRDTAGLGGKGGPYRLDAGHPVYQVSEVEKDAVPEHVKRAAREMAQRAFQQRLKEIQMSEYDAATYERFSGAVQRQVHALRVILDNLQAKGKERQWLRHQATGELDDAKIIDGLAGEKAIYKRRGDLEPQLGSPQQKPKRLRLVVDVSGSMYRFNGVDRRLERSMEAVCMVMEAFENYEEKFKYDIAGHSGDGYNISLVPANKIPKDNKQRLEILKTMHAHSQFCMSGDHTLEGTEHAIKDITKEEADEYFVIILSDANLSRYGINPARFAQILTSDPQVNAFAIFIGSLGDQAARLQRTLPAGRSFVAMDTKKIPQILQQIFTSTMLSSI", "length": 1905 }, "evidence": [ { "id": "A0A287AMT0", "url": "https://omabrowser.org/oma/group/A0A287AMT0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "M9PHH0-1", "protein_name": "von Willebrand factor A domain-containing protein 8", "gene_name": "c12.2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLANLRACSGHLLHHSLRNARIPRRSWASTTAGKDQPEEDSLTIGDVSVRLRKPKDPQLVPQQYADTSRIKETTDLKRRNELKYASDGTLQLSQSALHHLRWMLQKDALRQDMFLLGQPGPLRRQLAMQFLELTQREVEYVALSRDTTESDLKQRREINDRAAIFHDQGAVRAALNGRVLVLDGVEHAERNVLPILNNLLENREMHLESGKFLMSPERYDKLLEKHSREQLDEWGLLRVSEQFRVVALGLPTHKYKGTPLDPPLRSRFQSRNVTTYSYGELYEELQQEAPSVPGEQLKQLLTFALTLQQADPVLQLPDFPIHNLALGVKMLAANPSLSLHDVISRIYPYQTMLKPDQKKRVEELLKKLDIQLVPSPSIKKIEAQSQENSLIHIKLDELQLNLPEGQIPTASTYFVDLPHQRQALASLLQAYAVGDVCLVGEKGVGKLTLTQELLRLLQQTSEPMMLYEDMTSRDIVQQRITSPQGDTVWRDSPLVRAAKSGSVAVLNGLHRLHKSTASVLQRLIHDRELQLCDGTTLLGANRYQALLQQGFSKEELGKLGFLPIHESFRVVALAEPPRLGGGQPSWLTPELLSLFLYQELRPLRQSEEAELLAQLCGGDLPAGMDQLLKLAQLLRSSQDPLLQGLAGTLSTRQLLKLARRLAAYPESELSDVHEMLQNTFLARFMPALSRGALEQAIQQVGIKPREIKLKSKKNQIAVEDNSLRIGSTRWPLGNPTQAQLSKVPHTLFYEMPQHVQLLERLLQDYLIGEHLLLVGNQGVGKNKLVDRLLELMQRPREYIQLHRDTTVHSLTLQATLKDGQVSYEDSALVQAVRTGHVLVVDEADKAPVNVTCILRTLVESGEMVLADGRRIVPPGEGGRVPNSIETHPDFRLIVLANRPGFPFLGNDFFAALGDVFSCHAISNPDPESEIFLLQQYGPKVPIKTLRTLVNAFGELRTLADEGMLNYPYSTREVVSIVKHLERYPEENMSEVVGNVLDFDRYQPEALQQVTQVLAKHGIESYAEEEIQAIRKQRILQASVNRHSGLGVSGPKFGKLDPKNEPHVGGNTWAGGSGGRDTAGLGGKGGPFRLDKGHKVHQLSDEEKADVPEEIKRAAREMNRKAFEDKLKEIKMSAHDHKLYAQFSEPNRKQVQQLKAVLEAMQTKSKERQWQKYQTHGDLDDTRLVEGITGEKNIYRRRAEANPWADHVQEKPNRLKLVVDVSGSMYRFNGYDGRLDRQLEAVVMVMEAFEGFEKKIVYDIIGHSGEGWEIPFVTAGSPPKNDKERFEAIRMMHAHSQFCWSGDSTVKAAREACSTLGAEQDYDNAIVVVLSDANLQRYGIAPKDLAMALKRGEPKVKGYAIFIGSLAEEADEINAEMPAGQSFVCMDLTKLPHILQQIFTSSLL", "length": 1403 }, "evidence": [ { "id": "A0A287AMT0", "url": "https://omabrowser.org/oma/group/A0A287AMT0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q8CC88-1", "protein_name": "von Willebrand factor A domain-containing protein 8", "gene_name": "Vwa8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"length": 1905 }, "evidence": [ { "id": "A0A287AMT0", "url": "https://omabrowser.org/oma/group/A0A287AMT0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMT0", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT0" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMT0", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMT0", "url": 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"https://www.ncbi.nlm.nih.gov/protein/XP_013854321" }, "gene_names": [ { "name": "LOC100513741", "type": "recommended", "evidence": [ { "id": "A0A287AMV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7" } ] }, { "name": "LOC100513741", "type": "synonym", "evidence": [ { "id": "XP_013854321", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854321" } ] } ], "protein_names": [ { "name": "Zinc finger protein 211", "type": "recommended", "evidence": [ { "id": "A0A287AMV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 211-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013854321", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854321" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AMV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100513741", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7", "locus": {} } ], "crossref": [ { "id": "A0A287AMV7", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AMV7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003986", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003986", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513741", "url": "https://www.ncbi.nlm.nih.gov/gene/100513741", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513741", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513741", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AMV7", "url": "https://www.orthodb.org/?gene=A0A287AMV7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515:SF58", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515:SF58", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013854321", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854321", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AMV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEVLLEPPQGRVTFEDVALYFSWEEWNLLDEAQRCLYQDVMLETFVLASSLGCWPRAEDKEASSEQSISVGVSQIRTIKADSSPQKAQAFEMCGPLLRDILHQGTHLGQKPYTDGHQNFSAKLQQYQGQHFREIPFRSSVHRALLVKSCTTHVSGRSFSCGEIGNDFLASVEFFHQPVTHTEETKNSNECEAAFHDGKRHQNWGEGNEAFSYTETLVEDQRLLTREVLYECSKCGKACSRRCNLIQHQKVHTGERPYECHECGKLFTYLSSFIIHQRVHTGERPYECSECGKSFSQSYSLNSHKKVHTGEKPYECRECGKSFSQRSNLIQHQRVHTGEKPYECSECGKAFSQNFSLIYHRRVHTGERPHQCSECGKSFSRSSSLIHHRRLHTGERPYECSKCGKSFKQSSSFSSHRKVHTGERPYECGDCGKSFSHSSNLKNHWRVHTGERPIECSECGKSFSCKSNLVKHLRVHTGERPYECRDCGKSFSQSSSLIQHQRVHTRKRS", "length": 510, "header": "tr|A0A287AMV7-1|A0A287AMV7_PIG Isoform 1 of Zinc finger protein 211 OS=Sus scrofa OX=9823 GN=LOC100513741 PE=3 SV=2 CANONICAL=A0A287AMV7-1" }, "isoforms": [ { "isoform_ac": "A0A287AMV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7/entry#A0A287AMV7-1", "sequence": { "sequence": "MAAEVLLEPPQGRVTFEDVALYFSWEEWNLLDEAQRCLYQDVMLETFVLASSLGCWPRAEDKEASSEQSISVGVSQIRTIKADSSPQKAQAFEMCGPLLRDILHQGTHLGQKPYTDGHQNFSAKLQQYQGQHFREIPFRSSVHRALLVKSCTTHVSGRSFSCGEIGNDFLASVEFFHQPVTHTEETKNSNECEAAFHDGKRHQNWGEGNEAFSYTETLVEDQRLLTREVLYECSKCGKACSRRCNLIQHQKVHTGERPYECHECGKLFTYLSSFIIHQRVHTGERPYECSECGKSFSQSYSLNSHKKVHTGEKPYECRECGKSFSQRSNLIQHQRVHTGEKPYECSECGKAFSQNFSLIYHRRVHTGERPHQCSECGKSFSRSSSLIHHRRLHTGERPYECSKCGKSFKQSSSFSSHRKVHTGERPYECGDCGKSFSHSSNLKNHWRVHTGERPIECSECGKSFSCKSNLVKHLRVHTGERPYECRDCGKSFSQSSSLIQHQRVHTRKRS", "length": 510, "header": "tr|A0A287AMV7-1|A0A287AMV7_PIG Isoform 1 of Zinc finger protein 211 OS=Sus scrofa OX=9823 GN=LOC100513741 PE=3 SV=2 CANONICAL=A0A287AMV7-1" }, "locus": { "chromosome": "6", "start_pos": 62282068, "end_pos": 62269169, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051447.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051447.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045225.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045225.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513741", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513741", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 355, "end_pos": 357, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AMV7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 510, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AMV7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AMV7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AMV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 231, "end_pos": 258, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AMV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV7" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 85, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], 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], "protein_names": [ { "name": "Co-chaperone protein HGH1 homolog", "type": "recommended", "evidence": [ { "id": "A0A287AMW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW7/entry#names_and_taxonomy" } ] }, { "name": "protein HGH1 homolog", "type": "synonym", "evidence": [ { "id": "XP_003125495", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125495" } ] } ], "function": [ { "annotation": "Co-chaperone involved in the folding of nascent eukaryotic elongation factor eEF2, an essential component of the translation machinery. Recognizes a non-native conformation in the central domain of eEF2 and recruits the chaperonin-containing T-complex (TRiC) to the C-terminal region of the nascent polypeptide, preventing unproductive interactions and promoting efficient folding of the N-terminal GTPase domain. May also assist in eEF2 maturation by recruiting the molecular chaperone Hsp90.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW7#function" }, { "database": "UniProtKB", "id": "ARBA00094387", "url": "https://www.uniprot.org/uniprotkb/ARBA00094387#function" }, { "database": "UniProtKB", "id": "I3LR72", "url": "https://www.uniprot.org/uniprotkb/I3LR72#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AMW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HGH1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW7", "locus": { "chromosome": "4", "start_pos": 581758, "end_pos": 585035, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026590", "url": "https://www.ensembl.org/id/ENSSSCG00000026590" } ] } } ], "crossref": [ { "id": "ENSSSCG00000026590", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026590", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511128", "url": "https://www.ncbi.nlm.nih.gov/gene/100511128", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007205", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007205", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007206", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007206", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511128", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511128", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MCILLTN", "url": "https://omabrowser.org/oma/group/MCILLTN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AMW7", "url": "https://www.orthodb.org/?gene=A0A287AMW7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13387", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13387", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13387:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13387:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04063", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04063", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04064", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04064", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003125495", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125495", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AMW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LR72", "url": "https://www.uniprot.org/uniprotkb/I3LR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LR72-1", "url": "https://www.uniprot.org/uniprotkb/I3LR72-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGATATSPRGAAAPNELIRMGDTEAEAGPLAGRLASVGSAMPEAHPTAEAAKLLPFLALEARADLQAAAVQHALALTGSEPGRTLLAGQAALLRALIELAVAPAPAPAREATRVLINLAADPGLHKPLLAAEPELLACLLGCTLDPQWPWAEEAAAVLANLSREPAPCAALMEALAASGPGESGLERLVRALCTPGYNARAPLHYLGPVLSNLSQRPATRAFLLDPDRCVVQRLLPLTQYPDSSVRRGGVVGTLRNCCFEHRHHEWLLGPEVDILPFLLLPLAGPEDFSEEEMDRLPVDLQYLPPDKQREPDADIRKMLIEAIMLLTATAPGRKQVRDQGAYLILRELHSWEPEPDVQVACEKLIQVLIGDEPEHGLENLLEVQVPEDVERQLQQQDRQEQEQCKREHQELELAPEPQAEGAAPT", "length": 426, "header": "tr|A0A287AMW7-1|A0A287AMW7_PIG Isoform 1 of Co-chaperone protein HGH1 homolog OS=Sus scrofa OX=9823 GN=HGH1 PE=1 SV=1 CANONICAL=A0A287AMW7-1" }, "isoforms": [ { "isoform_ac": "A0A287AMW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW7/entry#A0A287AMW7-1", "sequence": { "sequence": "MGGATATSPRGAAAPNELIRMGDTEAEAGPLAGRLASVGSAMPEAHPTAEAAKLLPFLALEARADLQAAAVQHALALTGSEPGRTLLAGQAALLRALIELAVAPAPAPAREATRVLINLAADPGLHKPLLAAEPELLACLLGCTLDPQWPWAEEAAAVLANLSREPAPCAALMEALAASGPGESGLERLVRALCTPGYNARAPLHYLGPVLSNLSQRPATRAFLLDPDRCVVQRLLPLTQYPDSSVRRGGVVGTLRNCCFEHRHHEWLLGPEVDILPFLLLPLAGPEDFSEEEMDRLPVDLQYLPPDKQREPDADIRKMLIEAIMLLTATAPGRKQVRDQGAYLILRELHSWEPEPDVQVACEKLIQVLIGDEPEHGLENLLEVQVPEDVERQLQQQDRQEQEQCKREHQELELAPEPQAEGAAPT", "length": 426, "header": "tr|A0A287AMW7-1|A0A287AMW7_PIG Isoform 1 of Co-chaperone protein HGH1 homolog OS=Sus scrofa OX=9823 GN=HGH1 PE=1 SV=1 CANONICAL=A0A287AMW7-1" }, "locus": { "chromosome": "4", "start_pos": 585029, "end_pos": 583029, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042828.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042828.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045235.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045235.1" } ] } }, { "isoform_ac": "I3LR72-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW7/entry#I3LR72-1", "sequence": { "sequence": "MGGATATSPRGAAAPNELIRMGDTEAEAGPLAGRLASVGSAMPEAHPTAEAAKLLPFLALEARADLQAAAVQHALALTGSEPGRTLLAGQAALLRALIELAVAPAPAPAREATRVLINLAADPGLHKPLLAAEPELLACLLGCTLDPQWPWAEEAAAVLANLSREPAPCAALMEALAASGPGESGLERLVRALCTPGYNARAPLHYLGPVLSNLSQRPATRAFLLDPDRCVVQRLLPLTQYPDSSVRRGGVVGTLRNCCFEHRLPVDLQYLPPDKQREPDADIRKMLIEAIMLLTATAPGRKQVRDQGAYLILRELHSWEPEPDVQVACEKLIQVLIGDEPEHGLENLLEVQVPEDVERQLQQQDRQEQEQCKREHQELELAPEPQAEGAAPT", "length": 393, "header": "tr|I3LR72-1|A0A287AMW7_PIG Computationally mapped isoform of Co-chaperone protein HGH1 homolog OS=Sus scrofa OX=9823 GN=HGH1 PE=1 SV=3 CANONICAL=A0A287AMW7-1" }, "locus": { "chromosome": "4", "start_pos": 585029, "end_pos": 583029, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029038.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029038.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026604.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026604.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LR72", "url": "https://www.uniprot.org/uniprotkb/I3LR72" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511128", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511128", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P48362-1", "protein_name": "Co-chaperone protein HGH1", "gene_name": "HGH1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTSQLNELVEFLHSPQPAVRQIAIDNLVGFSAGPTSKVFKNDSYRPIKDIIKMIMDPEHGTRVIIQQGVTILVNLSEDKLVRNIILSDDKKFLKFLVWKIVDLTNPNADIMCILLSNLAKDDGILAVLNIKRNSSGEEVDDGLKLAALNKEVFKSLRAMDCLMDCFVKGYDKKLTKYASFNYLAFFFADISRFKLGRMYFIEEQEYDGVVPISKLLVFTEKYDAKVRREGVASTIKNSLFDSETHERLLKDEKINLLPYILLPIASAKDSEIDEEDMFNLPDELQLLPEDKERDPIPAIICCHLESILLLCTTHAGREYLRDKSVYPLVRELHKNVENEDIGELCYRIVNMLMRGEPGAGAVEEMPSKNAEEEEEEESEEEEDDDEEDEIVEVA", "length": 394 }, "evidence": [ { "id": "A0A287AMW7", "url": "https://omabrowser.org/oma/group/A0A287AMW7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q6AY79-1", "protein_name": "Co-chaperone protein HGH1 homolog", "gene_name": "Hgh1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRGPGVGSGLSGERGLSGKEAGADTEVAELLPFLVPGARADLQAAAAQHVLALTGVGSGRTLLAGQTALLRALIDLAVAPIPAPSRDASRALVNLAADPDLHWQMLAADPELPVRLLRCVLDPQWPWAEELAAVLANLSREPAPCAVLTEKLVAAEPERLGLERLVSALCMPSYNASAPLHYLGPLLSNLSQQAEVRAFLLDPDRCVVQRLLPLTQYTDSSVRRGGVVGTLRNCCFEHRHHKWLLGPQVDILPFLLLPLAGPEEFSEEEMEELPVDLQYLSPDKQREPDADIRKMLIEAIMLLTATAPGRKQVRDQGAYLILRELYAWESEPDVRMACEKLIQVLIGDEPEVGMENLLEVQVPEDVERQLQELDQQEQQELAQERRDKGAPRT", "length": 393 }, "evidence": [ { "id": "A0A287AMW7", "url": "https://omabrowser.org/oma/group/A0A287AMW7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q76NW7-1", "protein_name": "Co-chaperone protein HGH1 homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDQLPELVPFLLEPKSEIKLLALQHLLGVSDNQEARDILKSTQIINNCIKLITDSNHVVVRHALTILINLCQDTDMLNDIVKKNIVPRLVDGTTDTKNKMSEIFAMLLSNVTHTKEGCLSLMQCGKELEAFFIMKLVQVLTMDSNQEDYFKSTKNNWIVNIILNVTQIQEGRKIVLDKENQIFKEILPLVRHENVIKRRGILGIIRNCCYSEQHHDYLISPEVDILTKLCLPIRGNDKLDDDDLVGLHIDLHNSSLPIGNERDQDRECRKMVVESLIFLTGTKKGRVSMRTAKIYPILRNLFNFETEEELRDNVEKVVELIIRDEEGDPTPEEIEQMNKKQKLEDEDAQFETDEI", "length": 355 }, "evidence": [ { "id": "A0A287AMW7", "url": "https://omabrowser.org/oma/group/A0A287AMW7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8C3I8-1", "protein_name": "Co-chaperone protein HGH1 homolog", "gene_name": "Hgh1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRGPGVGSGFSGERGLLEQEAGADTEAVELLPFLVLGARADLQAAAAQHVLALTGAGSGRTLLAGQPELLRALVDLAVAPAPAPSRDASRALVNLAADPNVHWQLLAADPELPARLLRCVLDPQWPWAEEAAAVLANLSREPAPCAALMEKLMAAEPERLGLERLVNALCTPSYNAAAPLHYLGPLLSNLSQQAEVRAFLLDPDRCVVQRLLPLTQYTDSSVRRGGVVGTLRNCCFEHRHHKWLLGAQVDILPFLLLPLAGPEEFSEEEMDQLPVDLQYLSPDKQREPDADIRKMLIEAVMLLTATAPGRKQVRDQGAYLILRELHSWEPEPDVRMACEKLIQVLIGDEPEAGMENLLEVQVPEDVEQQLQELDQQEQQELAQELRGNGAPHT", "length": 393 }, "evidence": [ { "id": "A0A287AMW7", "url": "https://omabrowser.org/oma/group/A0A287AMW7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BTY7-1", "protein_name": "Co-chaperone protein HGH1 homolog", "gene_name": "HGH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 161, "end_pos": 163 }, { "start_pos": 213, "end_pos": 215 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", 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} ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AMW8", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100521350", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW8", "locus": {} } ], "crossref": [ { "id": "A0A287AMW8", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AMW8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037071", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037071", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR006696", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006696", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43461:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43461:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04241", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04241", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AMW8", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SGGCFPQFGCLVRSWGLRIGLLRSAQSPVSGCLREKLFDKANKHHFLHSLALLGVPLCRKPLWAGLLLASGTTLFCTSFYYQSLSGDHSIRTLAPVRGSLPIWGWLALAL", "length": 110, "header": "tr|A0A287AMW8-1|A0A287AMW8_PIG Isoform 1 of Transmembrane protein 256 OS=Sus scrofa OX=9823 GN=LOC100521350 PE=3 SV=2 CANONICAL=A0A287AMW8-1" }, "isoforms": [ { "isoform_ac": "A0A287AMW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW8/entry#A0A287AMW8-1", "sequence": { "sequence": "SGGCFPQFGCLVRSWGLRIGLLRSAQSPVSGCLREKLFDKANKHHFLHSLALLGVPLCRKPLWAGLLLASGTTLFCTSFYYQSLSGDHSIRTLAPVRGSLPIWGWLALAL", "length": 110, "header": "tr|A0A287AMW8-1|A0A287AMW8_PIG Isoform 1 of Transmembrane protein 256 OS=Sus scrofa OX=9823 GN=LOC100521350 PE=3 SV=2 CANONICAL=A0A287AMW8-1" }, "locus": { "chromosome": "1", "start_pos": 73131196, "end_pos": 73130867, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049984.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049984.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045349.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045349.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to 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"https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AMW8", "url": "https://www.uniprot.org/uniprotkb/A0A287AMW8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AMW8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 110, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AMW8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AMW8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, 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}, { "id": "PF02886", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02886", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6803157", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6803157", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020933638", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933638", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AN19", "url": "https://www.uniprot.org/uniprotkb/A0A287AN19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AN19-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AN19-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWTAWFVAALSVAAVCGIPQEANTVLRVTKDVLSNAISGTLQQSDALRSALREVPMGVGGIPYNDFHVREPPPKYTNGKQLGGNYKYGHIEANDNTAQLGGKYRYGEIVEPDGSIRDLRNSNYRSAESAHGSHRDHGRFRSAEGAPIVGRLHRRELRPGELPPGVATGALGPGGLLGTGGMLAADGILSGQGGLLGGGGLLGDGGLLGGGGVLGVLGEGGILSTVQGITGLRIVELTLPRVSVRLLPGVGVYLSLYTRVAINGKSLIGFLDIAVEVNITAKVRLTMDRTGYPRLVIERCDTLLGGIKVRLLRGLLPNLVDNLVNRVLANVLPDLLCPIVDVVLGLVNDQLGLVDSLIPLGILGSVQYTFSSLPLVTGEFLELDLNTLVGEAGGDLIDYPLGRPAMSPRQKMPELPPMGDNTNSQLAISANFLGSVLTLLQKQGALDIDITDGMFEELPPLTTSTLGALIPKVFQQYPESRPLTIRIQVPNPPTVTLQKDQALVKVFATSEIMVSQPNDVETTICLIDVDTELLAMFSVVNDKLMIDAKLDKTSLNLRTSNVGNFDVGLMEVLVGKIFDLAFMPAMNAVLGSGVPLPKILNIDFSNADIDILEDLLVLST", "length": 619, "header": "tr|A0A287AN19-1|A0A287AN19_PIG Isoform 1 of BPI fold containing family B member 4 OS=Sus scrofa OX=9823 GN=BPIFB4 PE=3 SV=2 CANONICAL=A0A287AN19-1" }, "isoforms": [ { "isoform_ac": "A0A287AN19-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AN19/entry#A0A287AN19-1", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCT00000066295.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045292.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045292.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN19", "url": "https://www.uniprot.org/uniprotkb/A0A287AN19" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100113429", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100113429", "resource": "KEGG Pathway" }, { "id": "R-SSC-6803157", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6803157", "resource": "Reactome", "description": "Antimicrobial peptides" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN19", "url": "https://www.uniprot.org/uniprotkb/A0A287AN19" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN19", "url": "https://www.uniprot.org/uniprotkb/A0A287AN19" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AN19-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 619, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AN19-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AN19" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AN19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AN19" }, { "id": "SM00329", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00329" } ], 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"https://www.uniprot.org/uniprotkb/A0A287AN31" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C1orf116", "url": "https://www.uniprot.org/uniprotkb/A0A287AN31", "locus": { "chromosome": "9", "start_pos": 67648333, "end_pos": 67661407, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032446", "url": "https://www.ensembl.org/id/ENSSSCG00000032446" } ] } } ], "crossref": [ { "id": "ENSSSCG00000032446", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032446", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HSEPQSW", "url": "https://omabrowser.org/oma/group/HSEPQSW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21555", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21555", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21555:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21555:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15385", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15385", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AN31", "url": "https://www.uniprot.org/uniprotkb/A0A287AN31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AN31-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AN31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPERELWPAGPGSEPVTRVSSCDSMMSTTSTRSGSSDSSYDFLSAEEKECLLFLEETIGSLDTEADSGLSTDESEQPVTPRGPRALPTAQPAPQGHPEETTVRQGPVPRRVTLSSSSHPPEPQSLGLRSGSYSLPRNIHISQNQNLRKGTTQTNSRIPRGSKGLVPGPEKEQVSESSEPHQAPASPQDAALDLDGPLIPPPEAFRDTQPQQCGQGNLARRPGVLRHTPQLPTSLGPQKKGDTASEAMSQKANEKGSTRGPGQPRSPPPVFSQNARAEDAPVPSWGDPNTQLAPVTAPKPRKLPPNIVLKSSRSSFHSDPQNRLSRHSEAAPGDSGPAPSSLQEQRKARREALEKLGLPQDQDEPSPHLSRPSVRLKETRAPAPSPAPAQVSAAMPAAGKALAPASTQGPSLGKAPVPAQQSSPGKVLIPAQEPTSGKVPAAKSMPIPIPKAPRANSPLTQRKPDSGLTLQESSIPGLRQMNFKSNTLERSGVGLSSYLSAEKEPSPQTSASLGKSSFLDRIPPNVLRNSRPRPASLGRKDFEGIQVGKLADLEQEQSSKRLSYQGQSRDKLPRPACVSVKISPKGVSDEHRREALKKLGLLKE", "length": 603, "header": "tr|A0A287AN31-1|A0A287AN31_PIG Isoform 1 of Chromosome 9 C1orf116 homolog OS=Sus scrofa OX=9823 GN=C1orf116 PE=4 SV=2 CANONICAL=A0A287AN31-1" }, "isoforms": [ { "isoform_ac": "A0A287AN31-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AN31/entry#A0A287AN31-1", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCT00000107585.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081975.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081975.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN31", "url": "https://www.uniprot.org/uniprotkb/A0A287AN31" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A7H2-1", "protein_name": "Chromosome 1 open reading frame 116", "gene_name": "C1orf116", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MMLEMQQKLNRISLCSFQSCDVNGRTRRDTAIPRQIKAHLQFLSVLFFFFPFSSQSDNSYDYLSVEEKECLMFLEETIGSLDAGADSGVSTDETDYAEASRLPRARLKRDSAPQDLENRAPPGSTAQQHAADQKGTEGSSSFPSSAPATAPNPGYHSLPRNITAANAHLANRADGKTDTHTMQDPVLPGKSPQELGKEGRLSQANMRREVRSLIIPPPAPFQDNQESRAEQPQSNSSDARKENTEESWTQPRPALGMVAVPGPTALPHREIGRESAVLPQGQQEHPAAQEVPQDPNTKRGPPTAPKPRKLPPNIILRTSKPSSVPLGAEPGHKVKVPPPSPAGSAGDTAAEKQNSGQLDPKEREKARREALEKLGLPQDLQEPCARPGPVPPPCDQARAAPSTAPAGRAMNFKSNTLERSGVGLGSCMAKEPGVKGSGSLGKMSFIERLAPSFLRSSRPRPASLGAGKDFAALKEPIEVEKSSKRRSSPLPSFPQPPRSCVSVKISPKGSTEEHRREALRKLGLLKE", "length": 527 }, "evidence": [ { "id": "A0A287AN31", "url": "https://omabrowser.org/oma/group/A0A287AN31/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A5D7K1-1", "protein_name": "Specifically androgen-regulated gene protein", "gene_name": "SARG", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPERELWPAGPGLEPATRVGSCDSMMSTTSTRSGSSDSSYDFLSAEEKECLLFLEETIGSLDTEADSGLSTEKSEQATTPQVPRALPKTQPAPQGHPEEITGRVPEPKRVTPFSSAHPPGPQSLGLRSGSYSLPRNIHIGRNQNLRKSTTLTNSHNPGGSEGLVSGPETEQVSQSREPRQTLATPPDAALELDGALIPPPEAFRDTQPQQRGQGSLPRGPGELSPRPQVHPSLSSQRNREPAPEAMSQKASEKGSTGEPVPPRPPPLVSSRDAGSGDAAVLSGGHPSARPAPLTAPKPRKLPPNIVLKSSRSSFHSDPQNRLSRHSEAAPGDPSPASSSLQEQRKARREALEKLGLPQDQEEPSPRLSRPSVRLKETGVQAVSPAPAQVPGRAPAAAPTQGPSPGKAPALAQPPSPGKVLVPAQESTPGTAPAAKSTPIPIPKGPRAHSPLTQRKPDSGLTLQESGVPGLRQMSFKSNTLERSGIGLSSYLSAEKASSPQTSTSLEKGSFLDRISPSVLRNSRPRPASLGTGKDFEGIQVGKLADLEQEGGPKRLSFQGQSRDKLPRPPCVSVRISPKGVSDEHRREALKKLGLLKE", "length": 597 }, "evidence": [ { "id": "A0A287AN31", "url": 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"https://bgee.org/?page=gene&gene_id=ENSSSCG00000017764", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513044", "url": "https://www.ncbi.nlm.nih.gov/gene/100513044", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045167", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045167", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513044", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513044", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WASFETK", "url": "https://omabrowser.org/oma/group/WASFETK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AND3", "url": "https://www.orthodb.org/?gene=A0A287AND3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15678", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15678", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15678:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15678:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003131813", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131813", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AND3", "url": "https://www.uniprot.org/uniprotkb/A0A287AND3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AND3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AND3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLFFSALLALLLVALIALFLGRWLVVRLATSWCQRKLKAELKIGSFFWIQNVSLKFQQHQQTVEIDSLRISSKLLSHDLPHYVALCFGEVRIRTDLQKVSGLFAPFSQNAGVHQKELSFSPSLLKIFCQLFSIHVDSVNIMVLKVATSESLWHIQIRDCSFLLDSDGKRLKCGVSLSQINSKVLKSGQLEDTCLAELSLALELCLEVGISSWQLKAITVDVWTLHAELHEGLFHSQLLRQGPGLAPKPVPGSEVTENLAEPTLPGLYLLQQLPDQVKVKMEITSVVLSMNSQKRHLNWTLKLLHFLYHRDEDQLPLRSFTANSDLAQMSTELLLKDGLLLSQSRQRIVCLNSLKASVQVTTIDLSASLVLNTCIIHYRHQEFSHWLHMLTPEAQESSSSVLKQRKKRTFPQILAPIIFSTSISNVNVSIQLGDTPPFALGFNSISLDYQHLRPQSIHQRGVLTVDHLCWRVGSDSHIQRAPHPPNMHVWGEALVLDSFTLQGSYNQPLGLSSTQSDTLFLDCTIRGLQVEASDTCAQCLSRILSLMGRQSGQSAVPRESSFGDLVSLLWKVDLKVEDMNLFTLSSLVGASEIRLDTLTVLGSAETSTVGIQGLVLALVKSVTEKMQPCCKAPDIPTPVLSLSMLSITYHSSIRALEVQCGAGLTLLWSPPDHMYLYQHVLATLQCRDLLRATLFPETVPLLALETPGTASEPEGCPPESSPPKRLLNLTLEVSTAKLTAFVAENKFITLAAESVSLSRHGGSLQAYCPELAAGFDGNSIFNFKEVEVQLLPELEEMILHRNPFPVLQTLRNRVWFLSLGSVSVEFPYQYDFSRTLDEAVGVQKWLKGLHRGTHAQASPSPAPLPPDLLLKVQHFSWVFLDDIFEVKLRDNYELMKDESKESAKRLQLLDAKVAALRKQHGELLPARKIEELYASLEHKNIEIYIQRSRRLYGNTPMRRALLTWSLAGLELVALADASFHGPERVVEQVRELDPGSPFPAEGMDLVIQWCRMLKCSVKTFLVRIRDYPRYLFEIRDWRLMGRLVGTEQSGQPCSRRRQILHLGLPWGDVAVERNMPPLKFYHDFHSEIFQYTVVWGPCWDPAWTLIGQSVDLLTKPSADPSPPLPWWDKSRLLFHGDWHMDIEQANLHQLATEDPYNTTENMHWEWNHLSFHWKPGQFVFKGDLDVNVRTASKYDDCCFLHLPDLCMTLDLQWLCHGNPHDHHGVTLRAPEFLPEVPLGQLHDSYRAFRSENLNLSIKMDLTRHSGTISQPRILLYSSTLRWMQNFWATWTSVTRPICRGKLFNNLKPSKKKLGQHYKQLSYTALFPQLQVHYWASFAQQRGIQIECSQGHVFTRGTQRLIPQAGTVMRRLISDWSVTQMVSDLSQVTVYLMASPTEENADHCLDPLVTKTHLLSLSSLTYQRHSNRTAEEELSTRVGDPAFHTHQLHLVDLRASWTTTNRDIAFGLYDGYKKAAVLKRNLSTEALKGLKIDPQMPAKKPKQNAGTSAPAPPPVSTPSFSGQPDKGSSGGTYMLQKLIEETDRFVVFTEEESGVSDQLCGIAACQTDDIYNRNCLIELVNCQMVLRGAETEGCVIVSAAKAQLLQCQHHPAWYGDTLKQKTSWTCLLDGMQYFATTESSPTEQDGRQLWLEVKNIEEHRQRSLDSVQELMESGQAVGGMVTTTTDWNQPAEAQQAQQVQRIISRCNCRMYYISYSHDIDPELATQIKPPEVHENQEKEDLLKKQEGAVDTFTLIHHELEISTNPAQYAMILDIVNNLLLHVEPKRKEHSEKKQRVRFQLEISSNPEEQRSSILHLQEAVRQHVAQIRQLEKQMYSIMKSLQDDSKNENLLDLNQKLQLQLNQEKANLQLESEELNILIRCFKDFQLQQANKMELRKQQEDVSVVRRTEFYFAQARWRLTEEDGQLGIAELELQRFLYSKVNKSDDTAEHLLELGWFTMNNLLPNAVYKVVLRPQSSCQSGRQLALRLFSKVRPPVGGISVKEHFEVNVVPLTIQLTHQFFHRIMGFFFPGRSVEDDEVGDEEDKSKLVTTGIPVVKPRQLIATDDAAPLGPGKGVAQGLNRSSGVRRSFRKAPEHPVDDIDKMKERAAMNNSFIYIKIPQVPLCVSYKGEKNSVDWGDLKLVLPCLEYHNNTWTWLDFAMAVKRDSRKALVAQVIKEKLRLKPATGAEVRGKLETKSDLNMQQQEEEEKARLLIGLSVGNKNPGKKSIFGRRK", "length": 2233, "header": "tr|A0A287AND3-1|A0A287AND3_PIG Isoform 1 of KIAA0100 OS=Sus scrofa OX=9823 GN=KIAA0100 PE=4 SV=2 CANONICAL=A0A287AND3-1" }, "isoforms": [ { "isoform_ac": "A0A287AND3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AND3/entry#A0A287AND3-1", "sequence": { "sequence": "MPLFFSALLALLLVALIALFLGRWLVVRLATSWCQRKLKAELKIGSFFWIQNVSLKFQQHQQTVEIDSLRISSKLLSHDLPHYVALCFGEVRIRTDLQKVSGLFAPFSQNAGVHQKELSFSPSLLKIFCQLFSIHVDSVNIMVLKVATSESLWHIQIRDCSFLLDSDGKRLKCGVSLSQINSKVLKSGQLEDTCLAELSLALELCLEVGISSWQLKAITVDVWTLHAELHEGLFHSQLLRQGPGLAPKPVPGSEVTENLAEPTLPGLYLLQQLPDQVKVKMEITSVVLSMNSQKRHLNWTLKLLHFLYHRDEDQLPLRSFTANSDLAQMSTELLLKDGLLLSQSRQRIVCLNSLKASVQVTTIDLSASLVLNTCIIHYRHQEFSHWLHMLTPEAQESSSSVLKQRKKRTFPQILAPIIFSTSISNVNVSIQLGDTPPFALGFNSISLDYQHLRPQSIHQRGVLTVDHLCWRVGSDSHIQRAPHPPNMHVWGEALVLDSFTLQGSYNQPLGLSSTQSDTLFLDCTIRGLQVEASDTCAQCLSRILSLMGRQSGQSAVPRESSFGDLVSLLWKVDLKVEDMNLFTLSSLVGASEIRLDTLTVLGSAETSTVGIQGLVLALVKSVTEKMQPCCKAPDIPTPVLSLSMLSITYHSSIRALEVQCGAGLTLLWSPPDHMYLYQHVLATLQCRDLLRATLFPETVPLLALETPGTASEPEGCPPESSPPKRLLNLTLEVSTAKLTAFVAENKFITLAAESVSLSRHGGSLQAYCPELAAGFDGNSIFNFKEVEVQLLPELEEMILHRNPFPVLQTLRNRVWFLSLGSVSVEFPYQYDFSRTLDEAVGVQKWLKGLHRGTHAQASPSPAPLPPDLLLKVQHFSWVFLDDIFEVKLRDNYELMKDESKESAKRLQLLDAKVAALRKQHGELLPARKIEELYASLEHKNIEIYIQRSRRLYGNTPMRRALLTWSLAGLELVALADASFHGPERVVEQVRELDPGSPFPAEGMDLVIQWCRMLKCSVKTFLVRIRDYPRYLFEIRDWRLMGRLVGTEQSGQPCSRRRQILHLGLPWGDVAVERNMPPLKFYHDFHSEIFQYTVVWGPCWDPAWTLIGQSVDLLTKPSADPSPPLPWWDKSRLLFHGDWHMDIEQANLHQLATEDPYNTTENMHWEWNHLSFHWKPGQFVFKGDLDVNVRTASKYDDCCFLHLPDLCMTLDLQWLCHGNPHDHHGVTLRAPEFLPEVPLGQLHDSYRAFRSENLNLSIKMDLTRHSGTISQPRILLYSSTLRWMQNFWATWTSVTRPICRGKLFNNLKPSKKKLGQHYKQLSYTALFPQLQVHYWASFAQQRGIQIECSQGHVFTRGTQRLIPQAGTVMRRLISDWSVTQMVSDLSQVTVYLMASPTEENADHCLDPLVTKTHLLSLSSLTYQRHSNRTAEEELSTRVGDPAFHTHQLHLVDLRASWTTTNRDIAFGLYDGYKKAAVLKRNLSTEALKGLKIDPQMPAKKPKQNAGTSAPAPPPVSTPSFSGQPDKGSSGGTYMLQKLIEETDRFVVFTEEESGVSDQLCGIAACQTDDIYNRNCLIELVNCQMVLRGAETEGCVIVSAAKAQLLQCQHHPAWYGDTLKQKTSWTCLLDGMQYFATTESSPTEQDGRQLWLEVKNIEEHRQRSLDSVQELMESGQAVGGMVTTTTDWNQPAEAQQAQQVQRIISRCNCRMYYISYSHDIDPELATQIKPPEVHENQEKEDLLKKQEGAVDTFTLIHHELEISTNPAQYAMILDIVNNLLLHVEPKRKEHSEKKQRVRFQLEISSNPEEQRSSILHLQEAVRQHVAQIRQLEKQMYSIMKSLQDDSKNENLLDLNQKLQLQLNQEKANLQLESEELNILIRCFKDFQLQQANKMELRKQQEDVSVVRRTEFYFAQARWRLTEEDGQLGIAELELQRFLYSKVNKSDDTAEHLLELGWFTMNNLLPNAVYKVVLRPQSSCQSGRQLALRLFSKVRPPVGGISVKEHFEVNVVPLTIQLTHQFFHRIMGFFFPGRSVEDDEVGDEEDKSKLVTTGIPVVKPRQLIATDDAAPLGPGKGVAQGLNRSSGVRRSFRKAPEHPVDDIDKMKERAAMNNSFIYIKIPQVPLCVSYKGEKNSVDWGDLKLVLPCLEYHNNTWTWLDFAMAVKRDSRKALVAQVIKEKLRLKPATGAEVRGKLETKSDLNMQQQEEEEKARLLIGLSVGNKNPGKKSIFGRRK", "length": 2233, "header": "tr|A0A287AND3-1|A0A287AND3_PIG Isoform 1 of KIAA0100 OS=Sus scrofa OX=9823 GN=KIAA0100 PE=4 SV=2 CANONICAL=A0A287AND3-1" }, "locus": { "chromosome": "12", "start_pos": 44893376, "end_pos": 44860588, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050521.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050521.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045517.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045517.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1516, "start_aa": "Thr", "end_pos": 1516, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1516", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AND3", "url": "https://www.uniprot.org/uniprotkb/A0A287AND3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513044", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513044", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AME7-1", "protein_name": "Bridge-like lipid transfer protein family member 2", "gene_name": "KIAA0100", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLLPPGLSLPLPAALLGLGLVLLLAGLLARWLACRLAVTWCRQKLQAELKIGSFGFFWAQNISLTFQREQQTVEIDNIWISSKLSRELPRYFELCFGEVRIRTDLQKSHGLQSSFPEAPKEADDGKNKADLALKPSLLRLLSQLFSIHMDSINIMVLHVATSESLWHIQASKTRLLLNGDGKSLNCEVNLTKVNSKVLRSSQLDDTCLAELALALSISLEISSKRRLVGVRLSVRTLQAELHEGLFCSPLLHRVIARAPQPSPDSAESLKSPSLLSRDTLQLIPKRVEVKLESTSVVLSMNSQKRHLTWSLKLLQFLYQREEEQIPLRNFTPTSDLDQMSVDLHLEDGLLLSQSRQRIVCLNSLKTSVQVTAIDLSAAVLLNTCIIHYRHQEFSHWLGLLAQEHRHHSAPVPSQGHKGRCYPQIIAPIILSASLSNVNVSVQLGDTPPFALGFNSISADYQHLRPQSVHQRAMLAVDHLCWRVGNDSHIQRAPHPPNMHVWGEALILDSFNLQGSYNQPLGMSSAQSDTLFLDCTIRGLQVESSDTCTECLARVLPLFCPQPSEAELAQQLSSAQSEPWILLWKVDLKVEDVNLFTLSAVVGALELRLDTLTVLGSAESCTVSVQGMVLALVKSITEKMQPCCKAPAIPNPVANLSMLSITYHSSIRSLEVQCGEGLAVLWSPPDHMHLYHHTLATLQCLEALRSAIGHGTPPSLTPQSPASPMATPTETLEPLQPDGAPPKRLLSLSLELSSAKVTAFVSEANYISLAAERTSVSWHGGALHGYCPELAAGFDGHSIFSFKEVEVKLLPELEEVILHRCAFPTLHTLRNRGWAFSFASVTIEFPYQYDFSRTLDAAVGVQKWLKGLHRRGRPAGTALPPDLLLKVTHFSWVFLDDVFEVKLRDNYELMKDESKESAKRLQLLDAKVAALRKQHGELLPARKIEELYASLEKKNIEIYIQRSRRLYANTPMRRALLTWTLSHLELVAMADESFHGTERVVEQMRDIDSVSPFPPEGLEMVTQWCRMMKGSIGSFFVRIRDYPRYLFEIRNWQLSGRLIGAEQCGQACSRRRQVLKLGLPWGDATVERNMPPLKFYHDFHSEISQYTIVWGPCWDPAWTLIGQCVDLLTKPSEDPSAPLSWWDKSRLLFHGDWHMDIEQANLHQLATEDPYNTTENMHWEWSHLSFHWKPGQFVFKGNLDINVRTASKYDDCCFLHLPDLCMTLDLQWLCHGNPHDHHGVVLRSPEFLPEVPVGQQYDSYRAFRSENLNLSIRMDLTRLSEEHSQPRILLYSSTLRWMQNFWATWTSVTRPICRGKLFNNMKPSKKKLGQHYKQLSYTALFPQLQVHYWASFAQQRGIQVECCQGHIFTRGTQRLIPQAGTVMRRLISEWSITQMVSDLSQVTVHLMASTCDENADHRLDTLVKKTHLLSLSSLTYQRHSNRTAEEELPLRDGDDGFHTHQLHLVDLRASWTTTNRDIAFGLYDGYKKAAVLKRNLSTEALKGLKIDTQLQAKKLKRGPLSAHSAPAKVTAPITSGRSERASSGGAYMLQKLIEETDKFVVFTEEESGASEQLCGIAACQTDDIYNRNCLIELVNCQMVLRGAETEGCVIVSAAKAQLLQCQHHPAWYGDTLKQKTSWTCLLDGMQYFATTESSPTEREHGQLWLEVKNIEEHRQRSLDSVQELMESGQAVGGMVSTTTDWNQPSEAQQTQQVQRIISRCSCRMYYISYSHDIDPELATQIKPPETPANQEKEDLLKKQEGAVDTFTLIHHDLEISTNPAQYAMILDIVNNLLLHVEPKRKEHSEKKQRVRFQLEISSNPEEQRSSILHLQEAVRQHVAQIRQLEKQMYSNVKSLQDDSKNESLLDLNHKLQQQLSQEKADLQLESEELNILIRCFKDFQLQRANKMELRKQPEDVSVARRTEFYFAQARWRLTEEDGQLGIAELELQRFLYSKVNKSDDTAEHLLELGWVTMNNLLPNAVYKVVLRPQSSCQSGRQLALRIFSKVRPPVGGISIKEHFEVNVVPLTIQLTHQFFHRMMGFFFPGRNVEEEEVGDEEDKSKLVTTGIPVVKPRQLIGADDSLGPGKGVTQGLNRTSGVRRSFRKAPEHPVDDIDKMKERAAMNNSFIYIKIPQVPLCVSYKGEKNSVDWGDLNLVLPCLEYHNNTWTWLDFAMAVKRDSRKALVAQVIKEKLRLKPAAGAEARGKLENKSDGTIQQQEEDEKARLLIGLSVGEKNPSKKSIFGRRK", "length": 2245 }, "evidence": [ { "id": "A0A287AND3", "url": "https://omabrowser.org/oma/group/A0A287AND3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9SBY1-1", "protein_name": "KIAA0100", "gene_name": "KIAA0100", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPLFFSALLALLLLGLSALFLVRWLVVRLATKWCQQKLQAELKIGSFFWIQNVSLKFQQHQQTVEIDSLWISSKLLSHDLPHYVALCFGEVRIRTDLQKVSSLFAPFSQSTGAHQKELAFSPSLLKICQLFSIHVDSINIMVLKVATSESLWHIQIRESSFLLDSDGKRLKCEVSLSQINSKVLKSGQLEDTCLAELSLALKLCLEVGISSGQLKAITVDVWTLHAELHEGLFHSQLLRQGTGLAPKPLPGSELTEDLAEPTLPGLYLLQQLPDQVKVKMEITSVVLSMNSQKRHLNWTLKLLHFLYHRDEDQLPLRSFTANSDVAQMSTELLLKDGLLLSQSRQRIVCLNCLKANVQVTTIDLSASLVLNTCIIHYRHQEFSHWLHMLALETQESSSSVLKQRKDRAFPQILAPIIFSTSISNVNVSIQLGDTPPFALGFNSISLDYQHLRPQSIHQRGVLTVDHLCWRVGSDSHIQRAPHPPNMHVWGEALVLDSFTLQGSYNQPLGLSSTQSDTLFLDCTIRGLQVEVSDTCAQCLSRIFSLMGPQSGKSAVSRESSFGESVSLLWKVDLKVEDMNLFTLSALVGASEIRLDTLTVLGSAETSTVGVQGLVLALVKSVTEKMQPCCKAPDIPTPVLSFSMLSVTYHSSIRSLEVQCGSGLTLLWSPPDHMYLYQHVLATLQCRDLLRTTLFPETVPLVELETAATPSEPEGCPPESSPPKRLLNLTLEVSTAKLTAFVAEDKFITLAAESVSLSRHGGSLQAYCPELAAGFDGNSIFSFKEVEVQLLPELEEMILHRNPFPGLQTLRNRVWLLSLGSVSVEFPYQYDFSRTLDEAVGVQKWLKGLHGGSRSQASPSSAPLPPDILLKVQHFSWVFLDDIFEVKLRDNYELMKDESKESAKRLQLLDAKVAALRKQHGELLPARKIEELYASLEHKNIEIYIQRSRRLYGNTPMRRALLTWSLAGLELVALADASFHGPERVLEQVRELDPGSPFPAEGIDLVIQWCRMLKCSVKTFLVRIRDYPRYLFEIRDWRLMGRLVGTEQSGQPCSRRRQILPLGLPWGNVAIERNMPPLKFYHDFHSEIFQYTVVWGPCWDPAWTLIGQCVDLLTKPSADPSPPLPWWDKSRLLFHGDWHMDIEQANLHQLATEDPYNTTENMHWEWNHLSFHWKPGQFVFKGDLDINVRTASKYDDCCFLHLPDLCMTLDLQWLCHGNPHDHHGVTLRAPEFLPEVPLGQFHDSYRAFRSENLNLSIKMDLTRHSGTISQPRILLYSSTLRWMQNFWATWTSVTRPICRGKLFNNLKPSKKKLGQHYKQLSYTALFPQLQVHYWASFAQQRGVQIECSQGHVFTRGTQRLIPQAGTVMRRLISDWSVTQMVSDLSQATVHLMASPAEENADHCLDPLVTKTHLLSLSSLTYQRHSSRTAEEEPSTRVGDSAFHTHQLHLVDLRASWTTTNRDIAFGLYDGYKKAAVLKRNLSTEALKGLKIDPHLPAKKPKQSVPSSAPTPPPVSTPSFSGQPDKGSSGGAYMLKKLIEETDRFVVFTEEESGVSDQLCGIAACQTDDIYNRNCLIELVNCQMVLRGAETEGCVIVSAAKAQLLQCQHHPAWYGDTLKQKTSWTCILDGMQYFATTESSPTEQDGPQLWLEVKNIEEHRQRSLDSVQELMESGQAVGGMVTTTTDWNQPAEAQQAQQIQRIISRCNCRMYYISYSHDIDPELATQIKPPEVPENQEKEDLLKKQEGAVDTFTLIHHELEISTNPAQYAMILDIVNNLLLHVEPKRKEHSEKKQRVRFQLEISSNPEEQRSSILHLQEAVRQHVAQIRQLEKQMYSIMKSLQDDSKNENLLDLNLKLQLQLNQEKANLQLESEELNILIRCFKDFQLQQANKMELRKQQEDVSVVRRTEFYFAQARWRLTEEDGQLGIAELELQRFLYSKVNKSDDTAEHLLELGWFTMNNLLPNAVYKVVLRPQSSCQSGRQLALRLFSKVRPPVGGISVKEHFEVNVVPLTIQLTHQFFHRIMGFFFPGRSVEDDEVGDEEDKSKLVTTGIPVVKPRQLIATDDTAPLGPGKGVAQGLNRSSGVRRSFRKAPEHPVDDIDKMKERAAMNNSFIYIKIPQVPLCVSYKGEKNSVDWGDLNLVLPCLEYHNNTWTWLDFAMAVKRDSRKALVAQVIKEKLRLKPATGSEVRGKLETKSDLNMQQQEEEEKARLLIGLSVGNKNPGKKSIFGRRK", "length": 2232 }, "evidence": [ { "id": "A0A287AND3", "url": "https://omabrowser.org/oma/group/A0A287AND3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q14667-1", "protein_name": "Bridge-like lipid transfer protein family member 2", "gene_name": "BLTP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLFFSALLVLLLVALSALFLGRWLVVRLATKWCQRKLQAELKIGSFRFFWIQNVSLKFQQHQQTVEIDNLWISSKLLSHDLPHYVALCFGEVRIRTDLQKVSDLSAPFSQSAGVDQKELSFSPSLLKIFCQLFSIHVDAINIMVLKVDTSESLWHIQISRSRFLLDSDGKRLICEVSLCKINSKVLKSGQLEDTCLVELSLALDLCLKVGISSRHLTAITVDVWTLHAELHEGLFQSQLLCQGPSLASKPVPCSEVTENLVEPTLPGLFLLQQLPDQVKVKMENTSVVLSMNSQKRHLTWTLKLLQFLYHRDEDQLPLRSFTANSDMAQMSTELLLEDGLLLSQSRQRIVCLNSLKASVQVTTIDLSASLVLNTCIIHYRHQEFSHWLHLLALETQGSSSPVLKQRKKRTFPQILAPIIFSTSISNVNISIQLGDTPPFALGFNSISLDYQHLRPQSIHQRGVLTVDHLCWRVGSDSHIQRAPHPPNMHVWGEALVLDSFTLQGSYNQPLGLSSTQSDTLFLDCTIRGLQVEASDTCAQCLSRILSLMGPQSGKSAVSRHSSFGESVSLLWKVDLKVEDMNLFTLSALVGASEVRLDTLTILGSAETSTVGIQGLVLALVKSVTEKMQPCCKAPDIPTPVLSLSMLSITYHSSIRSLEVQCGAGLTLLWSPPDHMYLYQHVLATLQCRDLLRATVFPETVPSLALETSGTTSELEGRAPEPLPPKRLLNLTLEVSTAKLTAFVAEDKFITLAAESVSLSRHGGSLQAYCPELAAGFDGNSIFNFKEVEVQLLPELEEMILHRNPFPALQTLRNRVWLLSFGSVSVEFPYQYDFSRTLDEAVGVQKWLKGLHQGTRAWASPSPVPLPPDLLLKVEHFSWVFLDDVFEVKLHDNYELMKDESKESAKRLQLLDAKVAALRKQHGELLPARKIEELYASLERKNIEIYIQRSRRLYGNTPMRRALLTWSLAGLELVALADASFHGPEHVVEQVQELDPGSPFPPEGLDLVIQWCRMLKCNVKSFLVRIRDYPRYLFEIRDWRLMGRLVGTEQSGQPCSRRRQILHLGLPWGNVAVERNMPPLKFYHDFHSEIFQYTVVWGPCWDPAWTLIGQCVDLLTKPSADPSPPLPWWDKSRLLFHGDWHMDIEQANLHQLATEDPYNTTENMHWEWSHLSFHWKPGQFVFKGDLDINVRTASKYDDCCFLHLPDLCMTLDLQWLCHGNPHDHHSVTLRAPEFLPEVPLGQLHDSYRAFRSENLNLSIKMDLTRHSGTISQPRILLYSSTLRWMQNFWATWTSVTRPICRGKLFNNLKPSKKKLGQHYKQLSYTALFPQLQVHYWASFAQQRGIQIECSQGHVFTRGTQRLIPQAGTVMRRLISDWSVTQMVSDLSQVTVHLMASPTEENADHCLDPLVTKTHLLSLSSLTYQRHSNRTAEEELSARDGDPTFHTHQLHLVDLRISWTTTNRDIAFGLYDGYKKAAVLKRNLSTEALKGLKIDPQMPAKKPKRGVPTSASAPPRVNTPSFSGQPDKGSSGGAYMLQKLIEETDRFVVFTEEESGMSDQLCGIAACQTDDIYNRNCLIELVNCQMVLRGAETEGCVIVSAAKAQLLQCQHHPAWYGDTLKQKTSWTCLLDGMQYFATTESSPTEQDGRQLWLEVKNIEEHRQRSLDSVQELMESGQAVGGMVTTTTDWNQPAEAQQAQQVQRIISRCNCRMYYISYSHDIDPELATQIKPPEVLENQEKEDLLKKQEGAVDTFTLIHHELEISTNPAQYAMILDIVNNLLLHVEPKRKEHSEKKQRVRFQLEISSNPEEQRSSILHLQEAVRQHVAQIRQLEKQMYSIMKSLQDDSKNENLLDLNQKLQLQLNQEKANLQLESEELNILIRCFKDFQLQRANKMELRKQQEDVSVVRRTEFYFAQARWRLTEEDGQLGIAELELQRFLYSKVNKSDDTAEHLLELGWFTMNNLLPNAVYKVVLRPQSSCQSGRQLALRLFSKVRPPVGGISVKEHFEVNVVPLTIQLTHQFFHRMMGFFFPGRSVEDDEVGDEEDKSKLVTTGIPVVKPRQLIATDDAVPLGPGKGVAQGLTRSSGVRRSFRKSPEHPVDDIDKMKERAAMNNSFIYIKIPQVPLCVSYKGEKNSVDWGDLNLVLPCLEYHNNTWTWLDFAMAVKRDSRKALVAQVIKEKLRLKSATGSEVRGKLETKSDLNMQQQEEEEKARLLIGLSVGDKNPGKKSIFGRRK", "length": 2235 }, "evidence": [ { "id": "A0A287AND3", "url": "https://omabrowser.org/oma/group/A0A287AND3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5SYL3-1", "protein_name": "Bridge-like lipid transfer protein family member 2", "gene_name": "Bltp2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPLFLSALLVLLLVALSALFLGRWLVVRLATRWCQRKLQAELKIGSFRFFWIQNVSLKFQQHQQTVEIDNLWISSKLLSHDLPNYVALCFGEVRIRTDLQKVSSLSAPFSQNTEVEQKELSLSPSLLKIFCQLFSIHVDAINIMVLKVATSESLWHIQISRSRFLLDSDGKSLICKVNLSKINSKVLKSGQLEDTCLVELSLALDLRLQVSVSSWHLTAVTVDVWTLHAELHEGLFHSQLLCHAPGRISKSVSCSDLTENFAEPTLPGLYLLQRLPDQVKVKMENTSVVLSMNSQKRHLTWTLKLLHFLYHRDEDQLPLRSFTANYDMAQMSTELLLEDGLLLSQSRQRIVCLNSLKANVQVTTIDLSASLVLNTCIIHYRHQEFSHWLLMLALETQGASSPDLKQRKKRTFPQILAPIIFSTSVSNVSISIQLGDTPPFALGFNSISLDYQHLRPQSIHQRAVLTVDHLCWRVGSDSHIQRAPHPPNMHVWGEALVLDSFTLQGSYNQPLGLSSTQSNTLFLDCTIRGLQVEISDICAQCLSRVLSLVIPQSERSAVSRKSSLGESVTLLWKVDLKVEDMNLFTLSALVGASELRLDTLTVLGSAETSTVGIQGLVLALVKSVTEKMQPCCKAPDIPTPVLGLSMLSLTYHSSIRSLEVQCGAGLTLLWSPPDHMYLYQHVRATLQCRDLLRATVFPEIIESHSLNTPQSTWEPEDHLPESSLPRRLLTLTLEVSTAKLTAFVAEDKFITLAAESVSLNRHGGSLQAYCPELAAGFDGNSIFNLKEVEVQLLPELEEMILHRNPFPALQTLRNRVWLLSLGSVSVEFPYQYDFSRTLDEAVGVQKWLKGLHRGTHAWASPSPAPLPPDLLLKVQHFSWVFLDDIFEVKLHDNYELMKDESKESAKRLQLLDAKVAALRKQHGELLPARKIEELYASLERKNIEIYIQRSRRLYGNTPMRRALLTWSLAGLELVALADASFHGPEHVIEQVRELDPGSPFPAEGMDLVTQWCRMLKCNVKTFLVRIRDYPRYLFEIRDWRLMGRLAGTEQSGQPCSRRRQILHLGLPWGNVAVERNMPPLKFYHDFHSEIFQYTVVWGPCWDPAWTLIGQCVDLLTKPSADPSPPLPWWDKSRLLFHGDWHMDIEQANLHQLATEDPYNTTENMHWEWSHLSFHWKPGQFVFRGDLDVNVRTASKYDDCCFLHLPDLCMTLDLQWLCHGNPHDHHSVTLRAPEFLPEVPLGQLHDSYRAFRSENLNLSIKMDLTRHSGTISQPRILVYSSTLRWMQNFWATWTSITRPICRGKLFNNLKPSKKKLGQHYKQLSYTALFPQLQVHYWASFAQQRGIQIECSQGHVFTRGTQRLIPQAGTVMRRLISEWSVTQMVSDLSQVTVHLMASPTEENADHCLDPLITKTHLLSLSSLTYQRHSNRTTEEELSARDGDPAFHTHQLYLVDLRISWTTTNRDIAFGLYDGYKKAAVLKRNLSTEALKGLKIDPQMSAKKPKRGIPPSAQVPPHVSTPSFSGRPDKGSSGGAYMLQKLIEETDRFVVFTEEESGMSDQLCGIAACQTDDIYNRNCLIELVNCQMVLRGAETEGCVIVSAAKAQLLQCQHHPAWYGDTLKQKTSWTCLLDGMQYFATTESSPTEQDGRQLWLEVKNIEEHRERSLDSVQELMESGQAVGGMVTTTTDWNQPAEAQQAQQVQRIISRCNCRMYYISYSHDIDPELATQIKPPEVHENQEKEDLLKKQEGAVDTFTLIHHELEISTNPAQYAMILDIVNNLLLHVEPKRKEHSEKKQRVRFQLEISSNPEEQRSSILHLQEAVRQHVAQIRHLEKQMYSIMKSLQDDSKNENLLDLNQKLQLQLNQEKANLQLESEELNILIRCFKDFQLQRANKMELRKQQEDVSVVRRTEFYFAQARWRLTEEDGQLGIAELELQRFLYSKVNKSDDTAEHLLELGWFTMNNLLPNAIYKVVLRPQSSCQSGRQLALRLFSKVRPPVGGISVKEHFEVNVVPLTIQLSHRFFHRMMGFFFPGRNVEDDEVGDEEDKSKLVTTGIPVVKPRQLIATDDAVPLGSGKGVAQGLTRSSGVRRSFRKLPEHPVDDIDKMKERAAMNNSFIYIKIPQVPLCVSYKGEKNSVDWGDLNLVLPCLEYHNNTWTWLDFAMAVKRDSRKALVAQVIKEKLRLKPATGSEVRGKLETKCDLNMQQQEEEKARLLIGLSVGDKNPGKKSIFGRRK", "length": 2234 }, "evidence": [ { "id": "A0A287AND3", "url": "https://omabrowser.org/oma/group/A0A287AND3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1157, "end_pos": 1159, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1254, "end_pos": 1256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1426, "end_pos": 1428, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1480, "end_pos": 1482, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1941, "end_pos": 1943, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2080, "end_pos": 2082, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2110, "end_pos": 2112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2150, "end_pos": 2152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" }, { "start_pos": 427, "end_pos": 429, "annotation": "n_glycosylation_sequon" }, { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" }, { "start_pos": 728, "end_pos": 730, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AND3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AND3" }, { "id": "SM01214", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01214" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FMP27/BLTP2/Hobbit GFWDK motif-containing RBG unit", "eco_id": "ECO_0000259", "start_pos": 1026, "end_pos": 1158, "start_aa": "Asp", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1516 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1157, "end_pos": 1159 }, { "start_pos": 1254, "end_pos": 1256 }, { "start_pos": 1426, "end_pos": 1428 }, { "start_pos": 1480, "end_pos": 1482 }, { "start_pos": 1941, "end_pos": 1943 }, { "start_pos": 2080, "end_pos": 2082 }, { "start_pos": 2110, "end_pos": 2112 }, { "start_pos": 2150, "end_pos": 2152 }, { "start_pos": 298, "end_pos": 300 }, { "start_pos": 427, "end_pos": 429 }, { "start_pos": 52, "end_pos": 54 }, { "start_pos": 728, "end_pos": 730 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ANF5-1", "uniprot_ac": "A0A287ANF5", "uniprot_id": "A0A287ANF5_PIG", "mass": { "chemical_mass": 37395.0, "monoisotopic_mass": 37395.0 }, "refseq": {}, "gene_names": [ { "name": "AVEN", "type": "recommended", "evidence": [ { "id": "A0A287ANF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANF5" } ] } ], "protein_names": [ { "name": "Apoptosis and caspase activation inhibitor", "type": "synonym", "evidence": [ { "id": "A0A287ANF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANF5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ANF5", "url": "https://www.uniprot.org/uniprotkb/A0A287ANF5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AVEN", "url": "https://www.uniprot.org/uniprotkb/A0A287ANF5", "locus": { "chromosome": "7", "start_pos": 80640119, "end_pos": 80447524, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000029474", "url": "https://www.ensembl.org/id/ENSSSCG00000029474" } ] } } ], "crossref": [ { "id": "A0A287ANF5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ANF5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000029474", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029474", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026187", "database": "InterPro", "categories": [ "Protein 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"https://www.uniprot.org/uniprotkb/A0A287ANF5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQADRGNRGGRGRRPGRGRPGGDRDRERAATAAAVARGGGGGDGGGRRGRGRGFRGGRGGRGGGAPRGGRREPRGRGAEVSAPPEDDWDAETYGEENDEQGNYSKRKIVSNWDRYQDTEKEVDNESGEAQRGTDFSVLLSSAGDSFSQFRFAEEKEWDGEASCPKQNSAFYVDCESLVRALQELPLSLRLNVAAELVQTALPLELPQVKPKRNDEAKGLGMQLKGPLGPGGKGSISELKAATGCPRYPGKDSPGPGPQKPGSPLHSADLLEEELDLLLNLDAPVKGDISSDQTSWDLESEKGGQVAQEEKDPAQPSVLEEKKVESEQPRTSKNVTEEELEDWLDSMIA", "length": 348, "header": "tr|A0A287ANF5-1|A0A287ANF5_PIG Isoform 1 of Apoptosis and caspase activation inhibitor OS=Sus scrofa OX=9823 GN=AVEN PE=4 SV=2 CANONICAL=A0A287ANF5-1" }, "isoforms": [ { "isoform_ac": "A0A287ANF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANF5/entry#A0A287ANF5-1", "sequence": { "sequence": 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"Protein" ] }, { "id": "A0A5G2R3V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3V5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LJ05", "url": "https://www.uniprot.org/uniprotkb/I3LJ05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LJ05-1", "url": "https://www.uniprot.org/uniprotkb/I3LJ05-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAFRVLVASRLAATPAFAPRPGLRLLPLGGWAPSPRAALHASAPRPGARVALVLSGCGVYDGTELHEASAILVHLSRGGAKVQIFAPDVPQMHVVDHSKGQPSEGETRNVLAESARIARGKIADLARLSAADHDAVIFPGGFGAAKNLSTFAVDGKDCKVDRDVERVLREFHGAGKPIGLCCIAPVLAAKVLRGVEVTVGHEQEEGGKWPHAGTAEVIKALGAKHRVAEVTEAHVDRRNKVVTTPAFMCDTELHLVHDGLGAMVREVLELAGH", "length": 274, "header": "tr|A0A287ANM8-1|A0A287ANM8_PIG Isoform 1 of Glutamine amidotransferase class 1 domain containing 3 OS=Sus scrofa OX=9823 GN=GATD3 PE=1 SV=3 CANONICAL=A0A287ANM8-1" }, "isoforms": [ { "isoform_ac": "A0A287ANM8-1", "url": 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"https://www.uniprot.org/uniprotkb/A0A287ANM8/entry#A0A5G2QJL9-1", "sequence": { "sequence": "MAAFRVLVASRLAATPAFAPRPGLRLLPLGGWAPSPRAALHASAPRPGARVALVLSGCGVYDGTELHEASAILVHLSRGGAKVQIFAPDVPQMHVVDHSKGQPSEGETRNVLAESARIARGKIADLARLSAADHDAVIFPGGFGAAKNLLCCIAPVLAAKVLRGVEVTVGHEQEEGGKWPHAGTAEVIKALGAKHRVAEVTISFPQPPHVDRRNKVVTTPAFMCDTELHLVHDGLGAMVREVLELAGH", "length": 248, "header": "tr|A0A5G2QJL9-1|A0A287ANM8_PIG Computationally mapped isoform of Glutamine amidotransferase class 1 domain containing 3 OS=Sus scrofa OX=9823 GN=GATD3 PE=1 SV=2 CANONICAL=A0A287ANM8-1" }, "locus": { "chromosome": "13", "start_pos": 207051191, "end_pos": 207042981, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078670.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078670.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062242.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062242.2" } ] } }, { "isoform_ac": "A0A5G2R3V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANM8/entry#A0A5G2R3V5-1", "sequence": { "sequence": "MAAFRVLVASRLAATPAFAPRPGLRLLPLGGWAPSPRAALHASAPRPGARVALVLSGCGVYDGTELHEASAILVHLSRGGAKVQIFAPDVPQMHVVDHSKGQPSEGETRYSTFAVDGKDCKVDRDVERVLREFHGAGKPIGLCCIAPVLAAKVLRGVEVTVGHEQEEGGKWPHAGTAEVIKALGAKHRVAEVTISFPQPRCTGGASRARVGQGTAPEAVVPPLCCATVTLAGPELTGSGEDTACGLRGPSGGGGVVTAWAHLPRAGQRWGWAPWFTGR", "length": 278, "header": "tr|A0A5G2R3V5-1|A0A287ANM8_PIG Computationally mapped isoform of Glutamine amidotransferase class 1 domain containing 3 OS=Sus scrofa OX=9823 GN=GATD3 PE=1 SV=2 CANONICAL=A0A287ANM8-1" }, "locus": { "chromosome": "13", "start_pos": 207050198, "end_pos": 207042981, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069853.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069853.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068872.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068872.2" } ] } }, { "isoform_ac": "I3LJ05-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANM8/entry#I3LJ05-1", "sequence": { "sequence": "MAAFRVLVASRLAATPAFAPLPLGGWAPSPRAALHASAPRPGARVALVLSGCGVYDGTELHEASAILVHLSRGGAKVQIFAPDVPQMHVVDHSKGQPSEGETRNVLAESARIARGKIADLARLSAADHDAVIFPGGFGAAKNLSTFAVDGKDCKVDRDVERVLREFHGAGKPIGLCCIAPVLAAKVLRGVEVTVGHEQEEGGKWPHAGTAEVIKALGAKHRVAEVTEAHVDRRNKVVTTPAFMCDTELHLVHDGLGAMVREVLELAGH", "length": 268, "header": "tr|I3LJ05-1|A0A287ANM8_PIG Computationally mapped isoform of Glutamine amidotransferase class 1 domain containing 3 OS=Sus scrofa OX=9823 GN=GATD3 PE=1 SV=3 CANONICAL=A0A287ANM8-1" }, "locus": { "chromosome": "13", "start_pos": 207051191, "end_pos": 207042981, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025442.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025442.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024062.3", "url": "https://www.ensembl.org/id/ENSSSCP00000024062.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJL9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJL9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623793", "name": "", "url": 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"database": "Ensembl Gene", "id": "ENSSSCG00000031407", "url": "https://www.ensembl.org/id/ENSSSCG00000031407" } ] } } ], "crossref": [ { "id": "A0A287ANN3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ANN3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031407", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031407", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00180", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00180", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24363", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24363", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24363:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24363:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ANN3", "url": "https://www.uniprot.org/uniprotkb/A0A287ANN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANN3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TGVALKDKRPKKKKKKKKRTTACTSICWAKLMPLLKLQHVHISVYRELFILWNSEVSSLFLCLVMEHSKDTLQNVIEKKRAARAALESQWVQNILGQVLDALEYLHQQDIIHRNLKPSNISLVSHDHCKLQDLSSDALMTDKAKWNIRAEEAMRLRKSIRSFPDGLRGVLKTIGERKIPDAKIFSSLLPLMLQTDPSERITVRDVIHITFVSNNFRSSSVAMTLYQQAVPTSIIDMLLESSVASILEVMQNFSSRPEVQHRAMKRLLRLPEDQLGLPWPAELVEVLVAIMKRHESVLEIQLHACSLLLRTLGQALAQDPAATVPSDSAVTPVLLGVLRSHPEEQQLLVMVYSLLCIVASQGGCWTPLGVELHKAGLLEQILEHLDTFPRNRDLCINGLILLWALLVDAVAVDKGPLEKAPALIAEVLAIHPTDAEMAEAGCAALWLLSLLGCVKEQQLEKVVVLFLQSIRLCQDRVLLVTSAYRGLASLAKASELAALQVVTPEESSNGLALIQETYQLHRDDPEVVESLCMLLAQLASHKEVLSELAASGVQPLVEEIHGRFTSSLVSIGLPGLKWLFPRVTPPPAWTQGNLRGRGRKT", "length": 600, "header": "tr|A0A287ANN3-1|A0A287ANN3_PIG Isoform 1 of Serine/threonine kinase-like domain-containing protein STKLD1 OS=Sus scrofa OX=9823 GN=STKLD1 PE=4 SV=2 CANONICAL=A0A287ANN3-1" }, "isoforms": [ { "isoform_ac": "A0A287ANN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANN3/entry#A0A287ANN3-1", "sequence": { "sequence": "TGVALKDKRPKKKKKKKKRTTACTSICWAKLMPLLKLQHVHISVYRELFILWNSEVSSLFLCLVMEHSKDTLQNVIEKKRAARAALESQWVQNILGQVLDALEYLHQQDIIHRNLKPSNISLVSHDHCKLQDLSSDALMTDKAKWNIRAEEAMRLRKSIRSFPDGLRGVLKTIGERKIPDAKIFSSLLPLMLQTDPSERITVRDVIHITFVSNNFRSSSVAMTLYQQAVPTSIIDMLLESSVASILEVMQNFSSRPEVQHRAMKRLLRLPEDQLGLPWPAELVEVLVAIMKRHESVLEIQLHACSLLLRTLGQALAQDPAATVPSDSAVTPVLLGVLRSHPEEQQLLVMVYSLLCIVASQGGCWTPLGVELHKAGLLEQILEHLDTFPRNRDLCINGLILLWALLVDAVAVDKGPLEKAPALIAEVLAIHPTDAEMAEAGCAALWLLSLLGCVKEQQLEKVVVLFLQSIRLCQDRVLLVTSAYRGLASLAKASELAALQVVTPEESSNGLALIQETYQLHRDDPEVVESLCMLLAQLASHKEVLSELAASGVQPLVEEIHGRFTSSLVSIGLPGLKWLFPRVTPPPAWTQGNLRGRGRKT", "length": 600, "header": "tr|A0A287ANN3-1|A0A287ANN3_PIG Isoform 1 of Serine/threonine kinase-like domain-containing protein STKLD1 OS=Sus scrofa OX=9823 GN=STKLD1 PE=4 SV=2 CANONICAL=A0A287ANN3-1" }, "locus": { "chromosome": "1", "start_pos": 273011440, "end_pos": 272995842, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050026.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050026.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045677.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045677.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 583, "start_aa": "Thr", "end_pos": 583, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr583", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANN3", "url": "https://www.uniprot.org/uniprotkb/A0A287ANN3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANN3", "url": "https://www.uniprot.org/uniprotkb/A0A287ANN3" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANN3", "url": "https://www.uniprot.org/uniprotkb/A0A287ANN3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ANN3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 600, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ANN3-F1.pdb", "url_external": 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"type": "synonym", "evidence": [ { "id": "XP_013843889", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843889" } ] } ], "protein_names": [ { "name": "KIAA0408", "type": "synonym", "evidence": [ { "id": "A0A287ANP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP1/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein KIAA0408 homolog", "type": "synonym", "evidence": [ { "id": "XP_013843889", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843889" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ANP1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KIAA0408", "url": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLHKQWENTETNWHREKMELLDQFDNERKEWESQWKIMQKKIEELCHEVKLRRKINMSERARIPDFDREKTIQDKMVESFPNDPSSGQCELMGVNNRDGLGKKDKMEQSLLSERQPMCKEQKATKKSKVEFIDALASDNQKKGETWPDLKASEESESCSGALHTALEELAKVSEELCSFQEEIQKRSHHRRMKSDSFLQEVPNVINMPHGDHMINSTQCIPSTDFEKEKQKNRKNLSCTDVFQNNYKKKGGIDIIDLQRHETPPVPPPRSTSRNFPSSYSEQAHESLKESLDHNIWVTQDQSERNCTPRFLWRQDEMPTLRLNEGKTLKDGIMFSPSAPKTKINNTASCSENAELRTWSCDIGIGVKNRSSTPWFQKTCSSPSKPKDEKAIPDHPVKSHPDPHRRNDSSSSVTQSSGPLRNFSCGFEKTTRNEKLAAKTDEFNRTVFRTDRNCRAVQQNQSYSESPEDLQPHDSLITSIGNVSESDSVSDILKTSAPMPMPKENVPDNSTQKSAASLFGQMEEHGSPSSYRKRLHEHDWRPSNLSGRPRSADPRSNYGVVEKLLKTYETSTGSALQNSKCFQTNWTKCNSDVSCGATLNQRLEKLQIEQELQHKTAMCGARQLKQVIDWKKVTEEPMAVKSSHGKGFSRPARPANRRLPSRWASRSPSAPPALRRTAQSFTIS", "length": 684, "header": "tr|A0A287ANP1-1|A0A287ANP1_PIG Isoform 1 of KIAA0408 OS=Sus scrofa OX=9823 GN=KIAA0408 PE=4 SV=1 CANONICAL=A0A287ANP1-1" }, "isoforms": [ { "isoform_ac": "A0A287ANP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP1/entry#A0A287ANP1-1", "sequence": { "sequence": "MDLHKQWENTETNWHREKMELLDQFDNERKEWESQWKIMQKKIEELCHEVKLRRKINMSERARIPDFDREKTIQDKMVESFPNDPSSGQCELMGVNNRDGLGKKDKMEQSLLSERQPMCKEQKATKKSKVEFIDALASDNQKKGETWPDLKASEESESCSGALHTALEELAKVSEELCSFQEEIQKRSHHRRMKSDSFLQEVPNVINMPHGDHMINSTQCIPSTDFEKEKQKNRKNLSCTDVFQNNYKKKGGIDIIDLQRHETPPVPPPRSTSRNFPSSYSEQAHESLKESLDHNIWVTQDQSERNCTPRFLWRQDEMPTLRLNEGKTLKDGIMFSPSAPKTKINNTASCSENAELRTWSCDIGIGVKNRSSTPWFQKTCSSPSKPKDEKAIPDHPVKSHPDPHRRNDSSSSVTQSSGPLRNFSCGFEKTTRNEKLAAKTDEFNRTVFRTDRNCRAVQQNQSYSESPEDLQPHDSLITSIGNVSESDSVSDILKTSAPMPMPKENVPDNSTQKSAASLFGQMEEHGSPSSYRKRLHEHDWRPSNLSGRPRSADPRSNYGVVEKLLKTYETSTGSALQNSKCFQTNWTKCNSDVSCGATLNQRLEKLQIEQELQHKTAMCGARQLKQVIDWKKVTEEPMAVKSSHGKGFSRPARPANRRLPSRWASRSPSAPPALRRTAQSFTIS", "length": 684, "header": "tr|A0A287ANP1-1|A0A287ANP1_PIG Isoform 1 of KIAA0408 OS=Sus scrofa OX=9823 GN=KIAA0408 PE=4 SV=1 CANONICAL=A0A287ANP1-1" }, "locus": { "chromosome": "1", "start_pos": 35774044, "end_pos": 35762432, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048885.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048885.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045548.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045548.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANP1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255188", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255188", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XKU2-1", "protein_name": "KIAA0408", "gene_name": "KIAA0408", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDLRKQLENTERNWNKEKMELLEKFDNERKEWECQWKVMQKKIEELYQEVKLRRENNMNVHDNKAIHSKMLQLSMSSPTSEKSDTVDLNYQHNVVNDEMEGGSLLSKTGPKHKEIRAERKNDTLLMDNLAFENHEELEDSLSIKTSKKNTKSYIGDLNVALKELARVSEELCSYQEEIRKKSNHRRMKSVPFLGEFEETQNSVILPEMNHLSNNESQSSVAFETEEHNNRKNLMSSTKVLKDMSYSSLTGNRGEVFRSWQQKEAPPVPPRSTSRHLTNSLSAVVQLSEAPMRDPGIKSNCKVQDCRSGRKLTNPSSIKQNETAVTCVNEEQAGKRPVIVTAAMPVTKSECIVPSFCHNTWAYDVGKDSKSEPSPLSAQKSCSDGNMAHSNRMHQKQNSKSHCSPYYSSDFYAPAALHSDLLGDSSCALGKTQKNETLAAKIDEFNRTVFHTDKRSNTLQENQVVRTALEDHKPCSPSCDSAISRTETVDTSCISNPKFSAAKEQETGNHSKVVRTVGQQKQINGLPNTSGYRHMLHEHDWRPSNLSGRPRSADSRSNYGVVEKLLKNYEKSTVISPCNAKYCKDKWTRANSESTDGGCETLNQYLEMLPTEQGKQEFLRNSARHIGQQLKQGKERQKLPEISVPAKCSNGKGFSRPARPANRRLPSRWASRSPSAPPAVRRTAYNCSVSFRSETSVV", "length": 697 }, "evidence": [ { "id": "A0A287ANP1", "url": "https://omabrowser.org/oma/group/A0A287ANP1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3Z623-1", "protein_name": "RIKEN cDNA 9330159F19 gene", "gene_name": "9330159F19Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSSSPVADTHTIATDLHEQRGSTEANRHKEKMELLDQFDKERKEWESQWKIMQKKIEELCQEVKLQRKMNMNEYSKVIDLCRDQDKMEFPPNHLNSAQCKLRVLNYRDDPEKEKKTERNFLGEESQGSPKQNIHTETKVEFWNPLATDRKACETWAGENTSKESKDFSVALNTALEELAKVSEELCTFQEEIQKHSNHRRMKSDPVLQEMPKAIPVPPQDHLISKGQGILPTNLEKEMQKKNLSCAYGLQSNSMNNCGIGTTGLQRGETPPTPPPRSTSRNLPSSYSEQAQERLKEHLYHRWVAHEIQDKTDNNPHFLLRQSPLFPQEGKSLKDSTMFSSWTPEVKIDRNLPGNKDTGLNLWSCDTILGTRESPSRPSQKTSFTSSGAKFEKVFPDNPTKLHLDLHVKNDFLPSVTQRDPVRIYDCNCEPTPRNEKLAAKIDEFNRTVFRTDRSCQAIQQSDIYTKSPDNLNSCDISTAQKAYLSEVDSGTSVLKASDNVSVPMENVFSDPEKIYSADLVNQTQTRESPSSYQLMLHEHDWRSSNFSSRPRSADPRSNYGVVEKLLKTYETETRSALQNSKGYRNNWTKCGSDESIAVKASNGKGFSRPARPANRRLPSRWASRSPSAPLALRRTAHRYKVSLQTEA", "length": 648 }, "evidence": [ { "id": "A0A287ANP1", "url": "https://omabrowser.org/oma/group/A0A287ANP1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZYL2-1", "protein_name": "Kiaa0408-like", "gene_name": "9330159F19Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNPLADAYTVAVDLHEQCETTEANWHKEKMELLDQFDNERKEWESQWRIMQKRIEELCQEVKLRRKMNMNEHSKVICLCHDQDKMEFPPNPNLGQCEFRVFNHRDDPEKEKKRERDFLGEESQVSPEQNIHRETKVGFQNPLATDRKACEAWAGETTSKDSKDCSVALNTALEELAKVSEELCTFQEEIRKRANHRRMKSDPVLQEMPNVTHVPHEDHLISNGQVILLTNLEKEKQSKNPSCQWTPKQFCGQLCSIGTTGLQRTATPPAPPPRSTSRNLSRSYSEQAQERLKESLYHRWVAHESQDKTNNNPHFLLRQSPLFPQEGKSMKDSTMFSSWIPEVKLDRQLPGNKDIGLNLWSCDTVLGTKESLSRPSQKTGFTSSAAKSAKVTPDNPMKSHLDLHVKNDFLPSVTLRDPVRSYNYNFEPTPRNEKLAAKIDELHRTVFRTDRGCQAIQENESYTKSPDNLNTCAVSTAHRADIPESDKGTSVLKETDSVPVPMENVFSDPTEASTVGLLKQMQTRESPSSCQLMSHEHDWRPSDFSSRPRSADPKSNYGVVEKLLKTYETETRSALQNSKCFRDNWTKCGSDESIAVKASNGKGFSRPARPANRRLPSRWASRSPSAPPALRRNPQL", "length": 637 }, "evidence": [ { "id": "A0A287ANP1", "url": "https://omabrowser.org/oma/group/A0A287ANP1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6ZU52-1", "protein_name": "Uncharacterized protein KIAA0408", "gene_name": "KIAA0408", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDLHKQWENTETNWHKEKMELLDQFDNERKEWESQWKIMQKKIEELCREVKLWRKININESAKIIDLYHEKTIPEKVIESSPNYPDLGQSEFIRTNHKDGLRKENKREQSLVSGGNQMCKEQKATKKSKVGFLDPLATDNQKECEAWPDLRTSEEDSKSCSGALSTALEELAKVSEELCSFQEEIRKRSNHRRMKSDSFLQEMPNVTNIPHGDPMINNDQCILPISLEKEKQKNRKNLSCTNVLQSNSTKKCGIDTIDLKRNETPPVPPPRSTSRNFPSSDSEQAYERWKERLDHNSWVPHEGRSKRNYNPHFPLRQQEMSMLYPNEGKTSKDGIIFSSLVPEVKIDSKPPSNEDVGLSMWSCDIGIGAKRSPSTSWFQKTCSTPSNPKYEMVIPDHPAKSHPDLHVSNDCSSSVAESSSPLRNFSCGFERTTRNEKLAAKTDEFNRTVFRTDRNCQAIQQNHSCSKSSEDLKPCDTSSTHTGSISQSNDVSGIWKTNAHMPVPMENVPDNPTKKSTTGLVRQMQGHLSPRSYRNMLHEHDWRPSNLSGRPRSADPRSNYGVVEKLLKTYETATESALQNSKCFQDNWTKCNSDVSGGATLSQHLEMLQMEQQFQQKTAVWGGQEVKQGIDPKKITEESMSVNASHGKGFSRPARPANRRLPSRWASRSPSAPPALRRTTHNYTISLRSEALMV", "length": 694 }, "evidence": [ { "id": "A0A287ANP1", "url": "https://omabrowser.org/oma/group/A0A287ANP1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 306, "end_pos": 308, "annotation": "n_glycosylation_sequon" }, { "start_pos": 345, "end_pos": 347, "annotation": "n_glycosylation_sequon" }, { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" }, { "start_pos": 422, "end_pos": 424, "annotation": "n_glycosylation_sequon" }, { "start_pos": 444, "end_pos": 446, "annotation": "n_glycosylation_sequon" }, { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" }, { "start_pos": 482, "end_pos": 484, "annotation": "n_glycosylation_sequon" }, { "start_pos": 509, "end_pos": 511, "annotation": "n_glycosylation_sequon" }, { "start_pos": 544, "end_pos": 546, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" }, { "start_pos": 585, "end_pos": 587, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ANP1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 684, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ANP1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ANP1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ANP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP1" }, { "id": "PF14818", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14818" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SOGA 1/2-like coiled-coil", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 54, "start_aa": "Met", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 216, "end_pos": 218 }, { "start_pos": 236, "end_pos": 238 }, { "start_pos": 306, "end_pos": 308 }, { "start_pos": 345, "end_pos": 347 }, { "start_pos": 369, "end_pos": 371 }, { "start_pos": 407, "end_pos": 409 }, { "start_pos": 422, "end_pos": 424 }, { "start_pos": 444, "end_pos": 446 }, { "start_pos": 460, "end_pos": 462 }, { "start_pos": 482, "end_pos": 484 }, { "start_pos": 509, "end_pos": 511 }, { "start_pos": 544, "end_pos": 546 }, { "start_pos": 57, "end_pos": 59 }, { "start_pos": 585, "end_pos": 587 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ANP6-1", "uniprot_ac": "A0A287ANP6", "uniprot_id": "A0A287ANP6_PIG", "mass": { "chemical_mass": 55203.0, "monoisotopic_mass": 55203.0 }, "refseq": {}, "gene_names": [ { "name": "ADGRG5", "type": "recommended", "evidence": [ { "id": "A0A287ANP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6" } ] } ], "protein_names": [ { "name": "Adhesion G-protein coupled receptor G5", "type": "recommended", "evidence": [ { "id": "A0A287ANP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6/entry#names_and_taxonomy" } ] }, { "name": "G-protein coupled receptor 114", "type": "synonym", "evidence": [ { "id": "A0A287ANP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6/entry#names_and_taxonomy" } ] }, { "name": "G-protein coupled receptor PGR27", "type": "synonym", "evidence": [ { "id": "A0A287ANP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Orphan adhesion G-protein coupled receptor (aGPCR). Ligand binding causes a conformation change that triggers signaling via guanine nucleotide-binding proteins (G proteins) and modulates the activity of downstream effectors, such as adenylate cyclase. ADGRG5 is specifically coupled to G(s) G proteins and mediates activation of adenylate cyclase activity.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANP6", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6#function" }, { "database": "UniProtKB", "id": "ARBA00093386", "url": "https://www.uniprot.org/uniprotkb/ARBA00093386#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ANP6", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ADGRG5", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6", "locus": { "chromosome": "6", "start_pos": 19488623, "end_pos": 19463024, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025503", "url": "https://www.ensembl.org/id/ENSSSCG00000025503" } ] } } ], "crossref": [ { "id": "A0A287ANP6", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ANP6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025503", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025503", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000203", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000203", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000832", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000832", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017981", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046338", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046338", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RIHVNLH", "url": "https://omabrowser.org/oma/group/RIHVNLH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12011", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12011", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12011:SF326", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12011:SF326", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00002", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00002", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01825", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01825", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ANP6", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKMEVAAKKRSLISFADFIHGLEWRLLNVSFGGHNLTLKTHTIQTLAFKLGCNFTGLSLSSDTLERVPQAQARHAMQFPAELTRDACRTHTRELRLICIYFFTSHFFKKDINSSLLNNYVLGAQLGHGPVNNLSDRVNISFWHNQSLESYTVTCVFWKEGASKDYWGAWSPEGCLTEQPSPSQVLCRCNHLTYFAVLMQLSPAPVPATLLAPLLYISLVGCSISIVASLLTVLLQFYARKQSDSTTRIHMNLNSSVLLLNVAFLLSPVWAVPGSACTVLGATLHYMLLSCLTWMAIEGFNLYLLLGRVYNIYFRRYVLKLCAVGWGVPAFLVLLLLATNSSVYGPHRIPLSDSQRNGTDFQNMSICWVRNPDVHSVLVMGYGGLMSLFNLVVLVWALRVLRRLRVQEKPPGPRACRDTVTVLGLTVLLGTTWALAFFSFGVFLLPQLFLFTIFNSFYGFFLFLWFCSQRCRAEAEAEAEMEAFSSSQAMQ", "length": 491, "header": "tr|A0A287ANP6-1|A0A287ANP6_PIG Isoform 1 of Adhesion G-protein coupled receptor G5 OS=Sus scrofa OX=9823 GN=ADGRG5 PE=3 SV=2 CANONICAL=A0A287ANP6-1" }, "isoforms": [ { "isoform_ac": "A0A287ANP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6/entry#A0A287ANP6-1", "sequence": { "sequence": "MEKMEVAAKKRSLISFADFIHGLEWRLLNVSFGGHNLTLKTHTIQTLAFKLGCNFTGLSLSSDTLERVPQAQARHAMQFPAELTRDACRTHTRELRLICIYFFTSHFFKKDINSSLLNNYVLGAQLGHGPVNNLSDRVNISFWHNQSLESYTVTCVFWKEGASKDYWGAWSPEGCLTEQPSPSQVLCRCNHLTYFAVLMQLSPAPVPATLLAPLLYISLVGCSISIVASLLTVLLQFYARKQSDSTTRIHMNLNSSVLLLNVAFLLSPVWAVPGSACTVLGATLHYMLLSCLTWMAIEGFNLYLLLGRVYNIYFRRYVLKLCAVGWGVPAFLVLLLLATNSSVYGPHRIPLSDSQRNGTDFQNMSICWVRNPDVHSVLVMGYGGLMSLFNLVVLVWALRVLRRLRVQEKPPGPRACRDTVTVLGLTVLLGTTWALAFFSFGVFLLPQLFLFTIFNSFYGFFLFLWFCSQRCRAEAEAEAEMEAFSSSQAMQ", "length": 491, "header": "tr|A0A287ANP6-1|A0A287ANP6_PIG Isoform 1 of Adhesion G-protein coupled receptor G5 OS=Sus scrofa OX=9823 GN=ADGRG5 PE=3 SV=2 CANONICAL=A0A287ANP6-1" }, "locus": { "chromosome": "6", "start_pos": 19486915, "end_pos": 19475970, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057757.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057757.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045553.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045553.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANP6", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LN02-1", "protein_name": "Adhesion G-protein coupled receptor G5", "gene_name": "ADGRG5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNCCWAPFLYLCLLVSQSRTAEASQETLHWMEKMEVAAKSRISTSSAELIHGLELRLLNASFGGHNLTLQTQIIQALAFKLNCNFSGLSLSSAALEKVPQARPQHAMQFPAELTRNACRTRSRDLRLICIYFSSTRFFQKDINSSLLNNYVLGAQLSHGYVSNLSEPVNISFWHNQSLEGYTVTCVFWKERASKHHWGAWSPEGCHTEQPTPSQVLCRCNHLTYFAVLMQLSQAPVPAELLAPLTYISLVGCSISIVASLLTVLLHLQARYSPALMQGLLPSAAQNASFFSTWPRENQVGFPGRQKARGAGVEADKPHCVWLLLGPCPSLLTRVPVIMCLRAQGAALPGDIQVAEGHAPTRRKQSDSVTRIHMNLHASVLLLNITFLLSPVLATPPAPGAACVVLAATLHYALLSCLTWMAIEGFNLYLLLGRVYNVYIRRYVLKLCAVGWGVPAFLVLFLLAVKSSVYGPYKIQLSDSHGNSTGFKITSICWVQSSWVHSVLVMGYGGLTSLFNLVVLAWALRVLNKLRAQEKAPGTRACRDTVTVLGLTVLLGTTWALAFFSFSVFLLPQLFLFTIFNSLYGFFLFLWFCSQRCRSEAEAEAEMEVFTSQMVQ", "length": 615 }, "evidence": [ { "id": "A0A287ANP6", "url": "https://omabrowser.org/oma/group/A0A287ANP6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V1A5B2-1", "protein_name": "Adhesion G protein-coupled receptor G5", "gene_name": "ADGRG5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLTLLLAAFVLCLAEAVLPSQGTEYIQSCMHNLTEGLKRGSSRHNWARLTELEQLLAHSTPGKEGYSFKTNMLEAFVFSITAGSFRGLNLSSSMPVRSKGQVSAQLRDSISFPVELMEGMKAQEKQKLICICIRSAGMFLDEHNSSVLNNHILGAFLHNRRVGRLRRPVEIHFRHDKELDSSNATCVFWQPAGTGSAGNWSREGCETQHQKGIVRCLCNHLTYFAVLLIQAHDLSESELQSLTYISTVGCSISAAAALCTLLLCCVFRCRPRDDTTRIHMNLLAALLLLNVSFLLSEPLAAGTTGGCQAAAALLHGSLLCALGWMGAEGFHLYLLLIKVYNIYVRHYLLKLCLCTWGLPTLAVVAVLIFKREIYGHHIISTADGYKNVTMCWLTSPSAHYVTLCYAGLILLFNVLVLVAVVAVLRRTRQQQQQRARKDWMTVLGLTCLLGTTWGTAFCAFGVLLVPQLYLFTVLNSLQGQQPGGILGGGFPHPPGTALRVPMALTVPPPQVCSSAFGTSARTAASAAPTAVPPDSGAAGLASVFSVN", "length": 547 }, "evidence": [ { "id": "A0A287ANP6", "url": "https://omabrowser.org/oma/group/A0A287ANP6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7FP15-1", "protein_name": "Adhesion G-protein coupled receptor G5", "gene_name": "Adgrg5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDTQRSLFFCLCILVAQSISQETLLPLLYLMKRLERPMGRALTSKVSPRNIHQLEQMLLNTSFFGHNLTLQTNSIQSLVFKLDCDFSGLSLSSATMANVSQAWAPHAMQFPAELTKDSCVTSRPAELRLICIYFFTAHLFQDDSNSSLLNNYVLGAQLDHRPVNNLQKPINISFWHNQSLEGYTVTCVFWKEGASKHSWGAWSPEGCYTEQPSPSQVLCHCNHLTYFAVLMQLSGDPVPAELQEPLEYISLVGCSISIVASLLTMLLYAHSRKQSDSITRIHMNLHGSVLLLNVTFLLSPQMALPTVPKSVCIALAATLHYALLSCLTWMAIEGYNLYLLLGHVYNVYIHRYLLKLCMLGWGFPALLVLLLLVIKSSVYGPYVISFSNSQDNGTGFQNVSMCWVCSPVVHSVLVMGYGGLMSLFNLVVLTWALWILCRLRIREKALSPWAYRDTVMVLGLTVLLGTTWVLAFFSFSVFRLPQLFLFTIFNSLYGFFLFLWFCLHRCHSDAEAKAEMEAVSSSQMTH", "length": 526 }, "evidence": [ { "id": "A0A287ANP6", "url": "https://omabrowser.org/oma/group/A0A287ANP6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1M644-1", "protein_name": "Adhesion G-protein coupled receptor G5", "gene_name": "Adgrg5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDQHQALFFCLCLLAAQVVLVETLPEILNLMKRLERPIGRALSSRVRFIHHLEQMLLNASFHGHNLTLQTNSIQSLVFKLSCGFPGLSLSSATLTNVSQAWAPHAMQFPAELTKNACVTSRPAELRLICVYFFTAHLFQDDRNSSLLNNYVLGAQLDHRPVNNLQRPVNISFWHNRSLEGYTVTCVFWKEGAGKHSWGAWSPKGCYTEQPSPTQVLCHCNHLTYFAVLMQLSGDPVPTELQTPLEYISLVGCSISIVASLLTILLNAHSRKLSDSTTRIHLNLNGSVLLLNITFLLSSQMVPPTVPRSVCTVLAATLHYALLSSLTWMGVEGFNLYLLLGRVYNVYIRRYLLKLCVLGWGFPALLVLLLLMIKSSVYGPCVISFSKSQENGTGFQNVSMCWVRSPMVHSILVMGYGGLTSLFNLVVLAWALWILCRLRKREKALSPWACRDIVMVLGLTVLLGTTWSLAFFSFSVFLLPQVFLFTIFNSLYGFFLFLWFCSQKRYSDAEAKAVMEAVSFSQMTH", "length": 524 }, "evidence": [ { "id": "A0A287ANP6", "url": "https://omabrowser.org/oma/group/A0A287ANP6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3V3Z3-1", "protein_name": "Adhesion G protein-coupled receptor G5", "gene_name": "Adgrg5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPHGALFFYLCLLAAQVVLVETLSDLLVLMKRLEQPVGRGLSSRARHIHSLEQKLLNASFGGHNLTLQTNSIQSLVFKLSCDFPGLSLSSTTLTNVSQVRAPHAMQFPAELTKGACVTSRPAELRLICIYFFTAHLFQDDRNSSLLNNYVLGAQLDHRPVNNLQKPVNISFWHNRSLEGYTVSCVFWKEGASKSSWGAWSPEGCYTEQPSATQVLCHCNHLTYFAVLMQLSGDPVPAELQVPLEYISFVGCSISIVASLLTILLYAQSRKQSDSTTRIHMNLNGSVLLLNVTFLLSSQMTLPTMPRPVCKVLAAVLHYALLSSLTWMAIEGFNLYLFLGRVYNAYIRRYLLKLCMLGWGFPALLVLLLLMIKSSVYGPCVTSLSKSQENGTGFQNVSMCWIRSPMVHSILVMGYGGFTSLFNLVVLAWALWILCRLRAREKALSPWAYRDTAMVLGLTVLLGTTWTLAFFSFGVFLLPQLFLFTIFNSLYGFFLFLWFCSQKRYSDAEAKAEMEAVSSSQMTH", "length": 524 }, "evidence": [ { "id": "A0A287ANP6", "url": "https://omabrowser.org/oma/group/A0A287ANP6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZF4-1", "protein_name": "Adhesion G protein-coupled receptor G5", "gene_name": "ADGRG5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDHCGALFLCLCLLTLQNATTETWEELLSYMENMQVSRGRSSVFSSRQLHQLEQMLLNTSFPGYNLTLQTPTIQSLAFKLSCDFSGLSLTSATLKRVPQAGGQHARGQHAMQFPAELTRDACKTRPRELRLICIYFSNTHFFKDENNSSLLNNYVLGAQLSHGHVNNLRDPVNISFWHNQSLEGYTLTCVFWKEGARKQPWGGWSPEGCRTEQPSHSQVLCRCNHLTYFAVLMQLSPALVPAELLAPLTYISLVGCSISIVASLITVLLHFHFRKQSDSLTRIHMNLHASVLLLNIAFLLSPAFAMSPVPGSACTALAAALHYALLSCLTWMAIEGFNLYLLLGRVYNIYIRRYVFKLGVLGWGAPALLVLLSLSVKSSVYGPCTIPVFDSWENGTGFQNMSICWVRSPVVHSVLVMGYGGLTSLFNLVVLAWALWTLRRLRERADAPSVRACHDTVTVLGLTVLLGTTWALAFFSFGVFLLPQLFLFTILNSLYGFFLFLWFCSQRCRSEAEAKAQIEAFSSSQTTQ", "length": 528 }, "evidence": [ { "id": "A0A287ANP6", "url": "https://omabrowser.org/oma/group/A0A287ANP6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANP6", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANP6", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANP6", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6" } ], "pmid": "" }, { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANP6", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP6" } ], "pmid": "" }, { "name": "adenylate cyclase-activating 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"tr|A0A287ANU1-1|A0A287ANU1_PIG Isoform 1 of Zinc finger protein 507 OS=Sus scrofa OX=9823 GN=ZNF507 PE=3 SV=1 CANONICAL=A0A287ANU1-1" }, "isoforms": [ { "isoform_ac": "A0A287ANU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANU1/entry#A0A287ANU1-1", "sequence": { "sequence": 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enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LHE0", "url": "https://www.uniprot.org/uniprotkb/I3LHE0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621814", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621814", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M2BA68-1", "protein_name": "Sorting nexin-20", "gene_name": "snx20", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEEEEKPPNTTANHTVSSAPEHLSPHQETLQGNGESAEDDLCFGASCLTTAELQQHWRAVKQEFRSVKLLFDIPSARIISQTISKHVVYQVVVIRSGSYDCERVAIERRYSDFLHLHQELLSDFSEELEDVVFPKKKMTRNFSEEIIAERRVALRDYLTQLYSLRFVRKSQAFQSFFTHQELKSAYDLLRGGRFSRALEGLQKVLVLQEKLSSHDATLVIPTLCAILVCQRDLEDFEAAFETGRKALPTVRRYELRKHHGPLLEALVDLGFSLELPVAQLQDELIRVNDSPCGKETQMSLKELVVQEFV", "length": 309 }, "evidence": [ { "id": "A0A287ANV6", "url": "https://omabrowser.org/oma/group/A0A287ANV6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0ZSH7-1", "protein_name": "Sorting nexin 20", "gene_name": "SNX20", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQDPECTAERELLEAASTIATFSITAPPDEEQSQPKAEISCELSKENPGRDDLRDSKASLSPNSSMTTKELQEYWRNEKSQCRQVKLLFEIPSTRIVEHHLSKYVMYKIIILQTGSFDSNKSVIERRYSDFEKLHRNLLEDFSEEMEDVTFPKKALTGNFTDEIISERKLAFKDYLRLLYSMKFIRRSKKFIDFLTKPELQEAYGCLRGGQYNKALEILLEVIRLQERLTRGNPVAIVPTLCAIVVCHKDLGNAASAFEYGEKALSYLCMRNSHKYYIPLLEAMITLAYELGKDFLSLQEKLEEWKAKKDPVRVFSLKELAVREYVK", "length": 328 }, "evidence": [ { "id": "A0A287ANV6", "url": "https://omabrowser.org/oma/group/A0A287ANV6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q2T9W1-1", "protein_name": "Sorting nexin-20", "gene_name": "SNX20", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASHKHPGSPGWTGPICQDMAGTTPKASAPRPDLPRPGPEDHLEAQGSPSSNSSMTTRELQEYWRAQKCCWKHVKLLFEIASARIEERKVSKFVMYQIVVIQTGSFDSNKAVLERRYSDFETLQKKLLKTFREEIEDVVFPKKHLIGNFTEEMISERKLALKEYLSVLYAIRCVRRSREFIDFLTRPELKEAFGCLRAGQYTKALDILMRVVPLQEKLTAHCPVLLVPALCAMLVCHRDLDRPAEAFAVGERALQCLQAREGHRYYAPLLDAMARLAYLLGKDFVSLQKRLEESQLRKPALRGFTLKELTVQEYLS", "length": 316 }, "evidence": [ { "id": "A0A287ANV6", "url": "https://omabrowser.org/oma/group/A0A287ANV6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5BK61-1", "protein_name": "Sorting nexin-20", "gene_name": "Snx20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASPQHPGGPGWTGPRNQCITRTRQEVLPPGPDLPCPGPEEAQDGPTSNSNMTTRELQEHWQKEKSRWKHVRLLFEIASARIEERKVSKFVMYQVVVIQTGSFDSDKAVVERRYSDFERLQRALLKRFGPELEDVTFPRKRLTGNLSAETICERRLELREYLRLLYAVRAVRRSREFADFLTRPELCEAFGCLRAGQYARALDLLGRVVPLQEKLTAHCPSAPVPALCAMLVCLRDLERPAEAFAVGERALRRLGARESHRYYAPLLDAMVRLAYALGKDLASLQGRLDESQLRRPTHRGATLKELTVREYLS", "length": 313 }, "evidence": [ { "id": "A0A287ANV6", "url": "https://omabrowser.org/oma/group/A0A287ANV6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7Z614-1", "protein_name": "Sorting nexin-20", "gene_name": "SNX20", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVVYQIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIEDVEFPRKHLTGNFAEEMICERRRALQEYLGLLYAIRCVRRSREFLDFLTRPELREAFGCLRAGQYPRALELLLRVLPLQEKLTAHCPAAAVPALCAVLLCHRDLDRPAEAFAAGERALQRLQAREGHRYYAPLLDAMVRLAYALGKDFVTLQERLEESQLRRPTPRGITLKELTVREYLH", "length": 316 }, "evidence": [ { "id": "A0A287ANV6", "url": "https://omabrowser.org/oma/group/A0A287ANV6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D2Y5-1", "protein_name": "Sorting nexin-20", "gene_name": "Snx20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASPEHPGSPGWRGPINQCRTRTRQEVLPPGPDLPCPGPEEAQDGPSSNSSMTTRELQEHWQKEKSRWKHVRLLFEIASARIEERKVSKFVMYQVVVIQTGSFDSDKAVVERRYSDFERLQKALLKRFGPELEDVTFPRKRLTGNLSAETICERRRELREYLRLLYAVRAVRRSREFLDFLTRPELREAFGCLRAGQYARALELLGRALPLQEKLTAHCPSAAVPALCAALVCLRDLERPAEAFAVGERALRCLRTRENHRYYAPLLDAMVRLAYALGKDFAALQSRLDENQLRRPTHRDATLKELTVREYLS", "length": 313 }, "evidence": [ { "id": "A0A287ANV6", "url": "https://omabrowser.org/oma/group/A0A287ANV6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VQG1-1", "protein_name": "Sorting nexin 21, isoform A", "gene_name": "Snx21", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPIHAVMAKRLHHQPTFDGDPPGPDELDSPAIEAAALDIPPPESDKALQKGVWERATSAEYKPTTDGSTVLRFDILLAHIMPPDGEDVKIKRFVVYELTVKQDGATEDTQPAKIERRYTDFRELYLGLKRQHPAEMANKYFPAKVLMGNFKSELIGERSAAFEAFLTYVASQAMLRDSEYFLRFLQHDELTRACQFLDERRNEMAIPILENCFRLLNKIYMNRSRPVLLILCRLVAACTSSPVPHHAAERWALLALSRFETLCDIDLLPLYIPLLHTCAHLWWQRGQDQKPITDRLTDMSKQGINTANTESLMQAIHKIDPRTETI", "length": 326 }, "evidence": [ { "id": "A0A287ANV6", "url": "https://omabrowser.org/oma/group/A0A287ANV6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV6", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "early endosome membrane", "id": "GO:0031901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031901", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV6", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phosphatidylinositol phosphate binding", "id": "GO:1901981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901981", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV6", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV6" } ], "pmid": "" }, { "name": "phosphatidylinositol binding", "id": "GO:0035091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035091", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANV6", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ANV6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 318, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ANV6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ANV6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ANV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANV6" }, { "id": "PS50195", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50195" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PX", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 193, "start_aa": "Val", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 150, "end_pos": 152 }, { "start_pos": 54, "end_pos": 56 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ANW9-1", "uniprot_ac": "A0A287ANW9", "uniprot_id": "A0A287ANW9_PIG", "mass": { "chemical_mass": 17557.0, "monoisotopic_mass": 17557.0 }, "refseq": {}, "gene_names": [ { "name": "TRAPPC6A", "type": "recommended", "evidence": [ { "id": "A0A287ANW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANW9" } ] } ], "protein_names": [ { "name": "Trafficking protein particle complex subunit 6A", "type": "recommended", "evidence": [ { "id": "A0A287ANW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ANW9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May play a role in vesicular transport during the biogenesis of melanosomes.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANW9", "url": "https://www.uniprot.org/uniprotkb/A0A287ANW9#function" }, { "database": "UniProtKB", "id": "ARBA00055456", "url": "https://www.uniprot.org/uniprotkb/ARBA00055456#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ANW9", "url": "https://www.uniprot.org/uniprotkb/A0A287ANW9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRAPPC6A", "url": "https://www.uniprot.org/uniprotkb/A0A287ANW9", "locus": { "chromosome": "6", "start_pos": 51579024, "end_pos": 51589445, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035374", "url": "https://www.ensembl.org/id/ENSSSCG00000035374" } ] } } ], "crossref": [ { "id": "A0A287ANW9", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ANW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035374", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035374", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14944", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14944", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR007194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12817", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12817", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12817:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12817:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04051", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04051", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287ANW9", "url": "https://www.uniprot.org/uniprotkb/A0A287ANW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADAALFEFLHTEMVAELWAHDPDPSPGGQKMSLSVLEGMGFRVGQALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQIDSLRTNHQGTYVLQDNSFPLLVRMASGLQYLEEAPKFLAFTCGLLRGTLSTLGIKSLVTASVAALPACKFQVVIQKA", "length": 159, "header": "tr|A0A287ANW9-1|A0A287ANW9_PIG Isoform 1 of Trafficking protein particle complex subunit 6A OS=Sus scrofa OX=9823 GN=TRAPPC6A PE=3 SV=3 CANONICAL=A0A287ANW9-1" }, "isoforms": [ { "isoform_ac": "A0A287ANW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANW9/entry#A0A287ANW9-1", "sequence": { "sequence": 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"tr|A0A287AP09-1|A0A287AP09_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287AP09-1" }, "isoforms": [ { "isoform_ac": "A0A287AP09-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP09/entry#A0A287AP09-1", "sequence": { "sequence": "LPLLVLVQMHHWVSTSIFISLLPLLPSPSLKSQACQQLLWPLPSRLVAFRAKGMIHVMDFSTSQGGGLEHSSQQCFWCLYTRAANLTRQLLHP", "length": 93, "header": "tr|A0A287AP09-1|A0A287AP09_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287AP09-1" }, "locus": { "chromosome": "14", "start_pos": 35637245, "end_pos": 35636191, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064986.2", "url": "https://www.ensembl.org/id/ENSSSCT00000064986.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045633.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045633.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP09", "url": "https://www.uniprot.org/uniprotkb/A0A287AP09" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AP09-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 93, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AP09-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AP09" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 85, "end_pos": 87 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AP22-1", "uniprot_ac": "A0A287AP22", "uniprot_id": "A0A287AP22_PIG", "mass": { "chemical_mass": 289552.0, "monoisotopic_mass": 289552.0 }, "refseq": {}, "gene_names": [ { "name": "TASOR2", "type": "recommended", "evidence": [ { "id": "A0A287AP22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22" } ] } ], "protein_names": [ { "name": "Transcription activation suppressor family member 2", "type": "synonym", "evidence": [ { "id": "A0A287AP22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AP22", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TASOR2", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22", "locus": { "chromosome": "10", "start_pos": 65197584, "end_pos": 65252646, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011136", "url": "https://www.ensembl.org/id/ENSSSCG00000011136" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011136", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011136", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR022168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046432", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046432", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056242", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056242", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056243", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056243", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16207", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16207", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16207:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16207:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12480", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12480", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12509", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12509", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23314", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23314", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24630", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24630", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AP22", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AP22-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AY79", "url": "https://www.uniprot.org/uniprotkb/A0A287AY79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AY79-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY79-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYP4", "url": "https://www.uniprot.org/uniprotkb/A0A287AYP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BD37", "url": "https://www.uniprot.org/uniprotkb/A0A287BD37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BD37-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BD37-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R339", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R339", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R339-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R339-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8Q9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8Q9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8Q9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6Y5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6Y5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6Y5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLU4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLU4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUK9", "url": "https://www.uniprot.org/uniprotkb/F1RUK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUK9-1", "url": "https://www.uniprot.org/uniprotkb/F1RUK9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LNF1", "url": "https://www.uniprot.org/uniprotkb/I3LNF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LNF1-1", "url": "https://www.uniprot.org/uniprotkb/I3LNF1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVRAILALSSGDLSKVNTVELCIMRTRCLVNIYLYSRYARKRTIHCVIQFFLFRFSIYDINREQDYGKHSGGILGDSELRPPSHLPSLLEKTETGLIPAKIFETVSLCSDSLFQRAVSILRTSYLDSASEHGFQYSQVTLVKNDIFLNEYKTFYQEKKASDYTQEELEETCGFLLFETENQAKLVCQRGLCVGSSALTTLGDPGKGVYISKYSDYLQARPWYHGKSGYVVIFNLIKGRVRFVSENYTSNYTSPSSGYDCHVAVNTHKVSHRTSHFRTFELSQYYLYELSGSTVAERPRQICPYVIVAFQYRDPKTMAAPPHIPKSFFLPSLSTVFISPWKGKLIIQGYLLCDITLWSSYGTGVPTQIPHELDFRYVMKVSSLKKTLPEAAFRKQNYLEHKVCCQDMCFSMYEVELSNKQGGGVDKLTEYIKREQLAIIKCLEDREFFILLTSSALIAETNLGEEQAGLRGLHLCHSSAPAGLKDLKVEDDFSLKVIPILPALHCALLEAKKSFTEKDICLNKLVKHNFQELYKVDKSPALTAASQDGIKETAFFGKVSSDFDLVPPAEKCPLEAWSQLKSYFSDPSGYILEVSTALDLLAERPQSPCISDGICDAGFSLAMTPDPEFHDSETEVKKETETEKNSEEVFKARQGAVVPLSPASNLRVQPKRKASTLPTVQSKRVSLCRPFPKRTPAGASKGPGSPTTLQLVKGQFPQKRKRGAEVLAAQFVQTAKSDRKNQDAPISEDVPVAANAKRARRREKSPVTAAPRAEPPVRRSPQKQRASLVQGEEHPRISGQPPAAKEETASQLQSEISEGQKDVISINTAQPETLSVAQKEPPEDCIVTCDSRALNMLADLALSAATSTAPSSEPRNFPCSSELPLRAALLSQEPALRSTSDHEYHRGVKSQKGGPFSTPSSDKSDAAADPRLGPEEESAVAGSQAPAEAPAALPEEALEGSDSSQSSFVAVEHSYALLLAEHSRRHLQQRGALGPAFAKSGTKGPEAGTPVGKVMPFRHQHSTSPLQKLPQDPALRRRARLLPSGLKDFPCSHTVFSCDGSFKVTFRCEADYVFSLDSKYTNNPLEKTVLRALHGPWNTDLPDNVEEVKLLLHMWVALFYSSQNQVMRSSRKVVEHSNPAKYVSINSTLDPIAFSELQEASGAEGCLDPLSETVDAPRGLPAPPSFPDTDSLLPFAKPPPRRGLELWVQSEQRDLFAAEGHAEAPEGQNLIYSCDTEITGEKAEPESSDKLEKSNLVLSRIGSTQTNGPSIPGEDKSFEPLDGARVAYSDALTQTTLPRTYDGISSPSMICQKSVYSALESRVDLFHAKRQTKTGALQGLIQHSHPLNKECQPSLERKDDVGYVMINLEPVSLTFEKNTYVPIETEAVNRADTPAALSKQVSPAPDLSHAVPTFAEAQGLGDIPSPAVTGQKGATYLHASPASRETLVKEMRSLQKDRPVAGSPSPPDRPVVTEALSSLRSSHSSPREEMKLSRDFVLQTQSPFSISSEAVVELAQAAETGPSSASAPRDTGDSLSRVPSRRAPGGSAELKSSRTGLKSEKVSCGSFNSEFSKQSGLSLNREASLEFSEEGSDLDLTLTISPPASPRDEEPEAETEQRLEALGPHLELREKAFSPQGGPRVADRDVNPAGTVSVRAPANEDRSSDTSQTATFVLSKETCALEVAEEMHVALDFPFGSLIEEVSPASSPDPQAPGTDAQTARAVSSCGAELSEARRESGDPPSQMESVDMAVTEKDNSLAGPAPPVGQDNLPRAPPVPFPAETPLVFRRPPERRGTCSALPGAVPEQAVPGERDQGPPLSARAPSWDAEPKQPASAARYRDAPGNQATSGSPLQPAAVEDRSPHVSHLIWDSRDPPLSPRHILETQPLAAAFVSAAAPADASLSLGEQAGPERPPEHLLGGDLKTDGRCYILVRSLRSGSVDSAAGPGGLVHAERPAAGLCSGPGAAGPGPQTQEISAVRMARLLQNNGPEAGTLGDSVDLGGAGPQWRPPSPPAFHRLRAGSAGPSRDLVGHGPLPPCSRADAPPDTAAAGLGGGQAPSASFVPGSRAPLGGGVSGAESAGEGPRAPRDPAPPGLRANPDIHYEPLSGDSDQDSLGECAKPREDARDSCAPRCRRAEDKGASDESDDPFLGLSHSDDDEDWGRSRRLPGLEPARRVPAFVRVRDLRGVARAYANFPVTRARSRAPGGVAQGASLRLRTDTGPGAADLTRSTLDLEYLRFAHKLKQMVKRGDARRSGPSAPAFPKAAPAPAPASRSRSPLVVTVVHSDPRPPGRRARGHTPHRMAQASSSWKERGAHGRSPLPNSGGSQAAALHLHKLKYNSPWKDSRGDISLILSEFAEFNKVLLGSGSQAAPRDPEPSEAAAPAPGPPCPRPASYEDLVADLCASLRVKLERVVKEACARTFLFHLVETADESFFLRTKNLLRKGGHAEMEPQRFCQAFPRENDTLLVIIRNEDIASHLHQIPALLRLKRLPGVLFAGVDSPEDVLHHTYQELFRAGGFVVSDGRILDSVSLVQLKEIVRILEKLNASGRWKWLLHYREIKKLKEDVRVDSTACKKNLILKSYQSANILELLHYHECDSRPSTKAEHLQCLLTLQIQRVHARFAVFLTEKPALSREVFEDSGILVTDVNDFIENMQKVAAPFRSSYW", "length": 2667, "header": "tr|A0A287AP22-1|A0A287AP22_PIG Isoform 1 of Transcription activation suppressor family member 2 OS=Sus scrofa OX=9823 GN=TASOR2 PE=3 SV=2 CANONICAL=A0A287AP22-1" }, "isoforms": [ { "isoform_ac": "A0A287AP22-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22/entry#A0A287AP22-1", "sequence": { "sequence": "MGVRAILALSSGDLSKVNTVELCIMRTRCLVNIYLYSRYARKRTIHCVIQFFLFRFSIYDINREQDYGKHSGGILGDSELRPPSHLPSLLEKTETGLIPAKIFETVSLCSDSLFQRAVSILRTSYLDSASEHGFQYSQVTLVKNDIFLNEYKTFYQEKKASDYTQEELEETCGFLLFETENQAKLVCQRGLCVGSSALTTLGDPGKGVYISKYSDYLQARPWYHGKSGYVVIFNLIKGRVRFVSENYTSNYTSPSSGYDCHVAVNTHKVSHRTSHFRTFELSQYYLYELSGSTVAERPRQICPYVIVAFQYRDPKTMAAPPHIPKSFFLPSLSTVFISPWKGKLIIQGYLLCDITLWSSYGTGVPTQIPHELDFRYVMKVSSLKKTLPEAAFRKQNYLEHKVCCQDMCFSMYEVELSNKQGGGVDKLTEYIKREQLAIIKCLEDREFFILLTSSALIAETNLGEEQAGLRGLHLCHSSAPAGLKDLKVEDDFSLKVIPILPALHCALLEAKKSFTEKDICLNKLVKHNFQELYKVDKSPALTAASQDGIKETAFFGKVSSDFDLVPPAEKCPLEAWSQLKSYFSDPSGYILEVSTALDLLAERPQSPCISDGICDAGFSLAMTPDPEFHDSETEVKKETETEKNSEEVFKARQGAVVPLSPASNLRVQPKRKASTLPTVQSKRVSLCRPFPKRTPAGASKGPGSPTTLQLVKGQFPQKRKRGAEVLAAQFVQTAKSDRKNQDAPISEDVPVAANAKRARRREKSPVTAAPRAEPPVRRSPQKQRASLVQGEEHPRISGQPPAAKEETASQLQSEISEGQKDVISINTAQPETLSVAQKEPPEDCIVTCDSRALNMLADLALSAATSTAPSSEPRNFPCSSELPLRAALLSQEPALRSTSDHEYHRGVKSQKGGPFSTPSSDKSDAAADPRLGPEEESAVAGSQAPAEAPAALPEEALEGSDSSQSSFVAVEHSYALLLAEHSRRHLQQRGALGPAFAKSGTKGPEAGTPVGKVMPFRHQHSTSPLQKLPQDPALRRRARLLPSGLKDFPCSHTVFSCDGSFKVTFRCEADYVFSLDSKYTNNPLEKTVLRALHGPWNTDLPDNVEEVKLLLHMWVALFYSSQNQVMRSSRKVVEHSNPAKYVSINSTLDPIAFSELQEASGAEGCLDPLSETVDAPRGLPAPPSFPDTDSLLPFAKPPPRRGLELWVQSEQRDLFAAEGHAEAPEGQNLIYSCDTEITGEKAEPESSDKLEKSNLVLSRIGSTQTNGPSIPGEDKSFEPLDGARVAYSDALTQTTLPRTYDGISSPSMICQKSVYSALESRVDLFHAKRQTKTGALQGLIQHSHPLNKECQPSLERKDDVGYVMINLEPVSLTFEKNTYVPIETEAVNRADTPAALSKQVSPAPDLSHAVPTFAEAQGLGDIPSPAVTGQKGATYLHASPASRETLVKEMRSLQKDRPVAGSPSPPDRPVVTEALSSLRSSHSSPREEMKLSRDFVLQTQSPFSISSEAVVELAQAAETGPSSASAPRDTGDSLSRVPSRRAPGGSAELKSSRTGLKSEKVSCGSFNSEFSKQSGLSLNREASLEFSEEGSDLDLTLTISPPASPRDEEPEAETEQRLEALGPHLELREKAFSPQGGPRVADRDVNPAGTVSVRAPANEDRSSDTSQTATFVLSKETCALEVAEEMHVALDFPFGSLIEEVSPASSPDPQAPGTDAQTARAVSSCGAELSEARRESGDPPSQMESVDMAVTEKDNSLAGPAPPVGQDNLPRAPPVPFPAETPLVFRRPPERRGTCSALPGAVPEQAVPGERDQGPPLSARAPSWDAEPKQPASAARYRDAPGNQATSGSPLQPAAVEDRSPHVSHLIWDSRDPPLSPRHILETQPLAAAFVSAAAPADASLSLGEQAGPERPPEHLLGGDLKTDGRCYILVRSLRSGSVDSAAGPGGLVHAERPAAGLCSGPGAAGPGPQTQEISAVRMARLLQNNGPEAGTLGDSVDLGGAGPQWRPPSPPAFHRLRAGSAGPSRDLVGHGPLPPCSRADAPPDTAAAGLGGGQAPSASFVPGSRAPLGGGVSGAESAGEGPRAPRDPAPPGLRANPDIHYEPLSGDSDQDSLGECAKPREDARDSCAPRCRRAEDKGASDESDDPFLGLSHSDDDEDWGRSRRLPGLEPARRVPAFVRVRDLRGVARAYANFPVTRARSRAPGGVAQGASLRLRTDTGPGAADLTRSTLDLEYLRFAHKLKQMVKRGDARRSGPSAPAFPKAAPAPAPASRSRSPLVVTVVHSDPRPPGRRARGHTPHRMAQASSSWKERGAHGRSPLPNSGGSQAAALHLHKLKYNSPWKDSRGDISLILSEFAEFNKVLLGSGSQAAPRDPEPSEAAAPAPGPPCPRPASYEDLVADLCASLRVKLERVVKEACARTFLFHLVETADESFFLRTKNLLRKGGHAEMEPQRFCQAFPRENDTLLVIIRNEDIASHLHQIPALLRLKRLPGVLFAGVDSPEDVLHHTYQELFRAGGFVVSDGRILDSVSLVQLKEIVRILEKLNASGRWKWLLHYREIKKLKEDVRVDSTACKKNLILKSYQSANILELLHYHECDSRPSTKAEHLQCLLTLQIQRVHARFAVFLTEKPALSREVFEDSGILVTDVNDFIENMQKVAAPFRSSYW", "length": 2667, "header": "tr|A0A287AP22-1|A0A287AP22_PIG Isoform 1 of Transcription activation suppressor family member 2 OS=Sus scrofa OX=9823 GN=TASOR2 PE=3 SV=2 CANONICAL=A0A287AP22-1" }, "locus": { "chromosome": "10", "start_pos": 65252447, "end_pos": 65198617, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041243.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041243.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045814.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045814.2" } ] } }, { "isoform_ac": "A0A287AY79-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22/entry#A0A287AY79-1", "sequence": { "sequence": "MEQDYGKHSGGILGDSELRPPSHLPSLLEKTETGLIPAKSGYQTKCFFETVSLCSDSLFQRAVSILRTSYLDSASEHGFQYSQVTLVKNDIFLNEYKTFYQEKKASDYTQEELEETCGFLLFETENQAKLVCQRGLCVGSSALTTLGDPGKGVYISKYSDYLQARPWYHGKSGYVVIFNLIKGRVRFVSENYTSNYTSPSSGYDCHVAVNTHKVSHRTSHFRTFELSQYYLYELSGSTVAERPRQICPYVIVAFQYRDPKTMAAPPHIPKSFFLPSLSTVFISPWKGKLIIQGYLLCDITLWSSYGTGVPTQIPHELDFRYVMKVSSLKKTLPEAAFRKQNYLEHKVCCQDMCFSMYEVELSNKQGGGVDKLTEYIKREQLAIIKCLEDREFFILLTSSALIAETNLGEEQAGLRGLHLCHSSAPAGLKDLKVEDDFSLKVIPILPALHCALLEAKKSFTEKDICLNKLVKHNFQELYKVDKSPALTAASQDGIKETAFFGKVSSDFDLVPPAEKCPLEAWSQLKSYFSDPSGYILEVSTALDLLAERPQSPCISDGICDAGFSLAMTPDPEFHDSETEVKKETETEKNSEEVFKARQGAVVPLSPASNLRVQPKRKASTLPTVQSKRVSLCRPFPKRTPAGASKGPGSPTTLQLVKGQFPQKRKRGAEVLAAQFVQTAKSDRKNQDAPISEDVPVAANAKRARRREKSPVTAAPRAEPPVRRSPQKQRASLVQGEEHPRISGQPPAAKEETASQLQSEISEGQKDVISINTAQPETLSVAQKEPPEDCIVTCDSRALNMLADLALSAATSTAPSSEPRNFPCSSELPLRAALLSQEPALRSTSDHEYHRGVKSQKGGPFSTPSSDKSDAAADPRLGPEEESAVAGSQAPAEAPAALPEEALEGSDSSQSSFVAVEHSYALLLAEHSRRHLQQRGALGPAFAKSGTKGPEAGTPVGKVMPFRHQHSTSPLQKLPQDPALRRRARLLPSGLKDFPCSHTVFSCDGSFKVTFRCEADYVFSLDSKYTNNPLEKTVLRALHGPWNTDLPDNVEEVKLLLHMWVALFYSSQNQVMRSSRKVVEHSNPAKYVSINSTLDPIAFSELQEASGAEGCLDPLSETVDAPRGLPAPPSFPDTDSLLPFAKPPPRRGLELWVQSEQRDLFAAEGHAEAPEGQNLIYSCDTEITGEKAEPESSDKLEKSNLVLSRIGSTQTNGPSIPGEDKSFEPLDGARVAYSDALTQTTLPRTYDGISSPSMICQKSVYSALESRVDLFHAKRQTKTGALQGLIQHSHPLNKECQPSLERKDDVGYVMINLEPVSLTFEKNTYVPIETEAVNRADTPAALSKQVSPAPDLSHAVPTFAEAQGLGDIPSPAVTGQKGATYLHASPASRETLVKEMRSLQKDRPVAGSPSPPDRPVVTEALSSLRSSHSSPREEMKLSRDFVLQTQSPFSISSEAVVELAQAAETGPSSASAPRDTGDSLSRVPSRRAPGGSAELKSSRTGLKSEKVSCGSFNSEFSKQSGLSLNREASLEFSEEGSDLDLTLTISPPASPRDEEPEAETEQRLEALGPHLELREKAFSPQGGPRVADRDVNPAGTVSVRAPANEDRSSDTSQTATFVLSKETCALEVAEEMHVALDFPFGSLIEEVSPASSPDPQAPGTDAQTARAVSSCGAELSEARRESGDPPSQMESVDMAVTEKDNSLAGPAPPVGQDNLPRAPPVPFPAETPLVFRRPPERRGTCSALPGAVPEQAVPGERDQGPPLSARAPSWDAEPKQPASAARYRDAPGNQATSGSPLQPAAVEDRSPHVSHLIWDSRDPPLSPRHILETQPLAAAFVSAAAPADASLSLGEQAGPERPPEHLLGGDLKTDGRCYILVRSLRSGSVDSAAGPGGLVHAERPAAGLCSGPGAAGPGPQTQEISAVRMARLLQNNGPEAGTLGDSVDLGGAGPQWRPPSPPAFHRLRAGSAGPSRDLVGHGPLPPCSRADAPPDTAAAGLGGGQAPSASFVPGSRAPLGGGVSGAESAGEGPRAPRDPAPPGLRANPDIHYEPLSGDSDQDSLGECAKPREDARDSCAPRCRRAEDKGASDESDDPFLGLSHSDDDEDWGRSRRLPGLEPARRVPAFVRVRDLRGVARAYANFPVTRARSRAPGGVAQGASLRLRTDTGPGAADLTRSTLDLEYLRFAHKLKQMVKRGDARRSGPSAPAFPKAAPAPAPASRSRSPLVVTVVHSDPRPPGRRARGHTPHRMAQASSSWKERGAHGRSPLPNSGGSQAAALHLHKLKYNSPWKDSRGDISLILSEFAEFNKVLLGSGSQAAPRDPEPSEAAAPAPGPPCPRPASYEDLVADLCASLRVKLERVVKEACARTFLFHLVETADESFFLRTKNLLRKGGHAEMEPQRFCQAFPRENDTLLVIIRNEDIASHLHQIPALLRLKRLPGVLFAGVDSPEDVLHHTYQELFRAGGFVVSDGRILDSVSLVQLKEIVRILEKLNASGRWKWLLHYREIKKLKEDVRVDSTACKKNLILKSYQSANILELLHYHECDSRPSTKAEHLQCLLTLQIQRVHARFAVFLTEKPALSREVFEDSGILVTDVNDFIENMQKVAAPFRSSYW", "length": 2612, "header": "tr|A0A287AY79-1|A0A287AY79_PIG Computationally mapped isoform of Transcription activation suppressor family member 2 OS=Sus scrofa OX=9823 GN=TASOR2 PE=3 SV=3 CANONICAL=A0A287AP22-1" }, "locus": { "chromosome": "10", "start_pos": 65252447, "end_pos": 65198617, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065389.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065389.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049105.3", "url": "https://www.ensembl.org/id/ENSSSCP00000049105.3" } ] } }, { "isoform_ac": "A0A287AYP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22/entry#A0A287AYP4-1", "sequence": { "sequence": "AGRLAGAGRAEGRGGASQVFETVSLCSDSLFQRAVSILRTSYLDSASEHGFQYSQVTLVKNDIFLNEYKTFYQEKKASDYTQEELEETCGFLLFETENQAKLVCQRGLCVGSSALTTLGDPGKGVYISKYSDYLQARPWYHGKSGYVVIFNLIKGRVRFVSENYTSNYTSPSSGYDCHVAVNTHKVSHRTSHFRTFELSQYYLYELSGSTVAERPRQICPYVIVAFQYRDPKTMAAPPHIPKSFFLPSLSTVFISPWKGKLIIQGYLLCDITLWSSYGTGVPTQIPHELDFRYVMKVSSLKKTLPEAAFRKQNYLEHKVCCQDMCFSMYEVELSNKQGGGVDKLTEYIKREQLAIIKCLEDREFFILLTSSALIAETNLGEEQAGLRGLHLCHSSAPAGLKDLKVEDDFSLKVIPILPALHCALLEAKKSFTEKDICLNKLVKHNFQELYKVDKSPALTAASQDGIKETAFFGKVSSDFDLVPPAEKCPLEAWSQLKSYFSDPSGYILEVSTALDLLAERPQSPCISDGICDAGFSLAMTPDPEFHDSETEVKKETETEKNSEEVFKARQGAVVPLSPASNLRVQPKRKASTLPTVQSKRVSLCRPFPKRTPAGASKGPGSPTTLQLVKGQFPQKRKRGAEVLAAQFVQTAKSDRKNQDAPISEDVPVAANAKRARRREKSPVTAAPRAEPPVRRSPQKQRASLVQGEEHPRISGQPPAAKEETASQLQSEISEGQKDVISINTAQPETLSVAQKEPPEDCIVTCDSRALNMLADLALSAATSTAPSSEPRNFPCSSELPLRAALLSQEPALRSTSDHEYHRGVKSQKGGPFSTPSSDKSDAAADPRLGPEEESAVAGSQAPAEAPAALPEEALEGSDSSQSSFVAVEHSYALLLAEHSRRHLQQRGALGPAFAKSGTKGPEAGTPVGKVMPFRHQHSTSPLQKLPQDPALRRRARLLPSGLKDFPCSHTVFSCDGSFKVTFRCEADYVFSLDSKYTNNPLEKTVLRALHGPWNTDLPDNVEEVKLLLHMWVALFYSSQNQVMRSSRKVVEHSNPAKYVSINSTLDPIAFSELQEASGAEGCLDPLSETVDAPRGLPAPPSFPDTDSLLPFAKPPPRRGLELWVQSEQRDLFAAEGHAEAPEGQNLIYSCDTEITGEKAEPESSDKLEKSNLVLSRIGSTQTNGPSIPGEDKSFEPLDGARVAYSDALTQTTLPRTYDGISSPSMICQKSVYSALESRVDLFHAKRQTKTGALQGLIQHSHPLNKECQPSLERKDDVGYVMINLEPVSLTFEKNTYVPIETEAVNRADTPAALSKQVSPAPDLSHAVPTFAEAQGLGDIPSPAVTGQKGATYLHASPASRETLVKEMRSLQKDRPVAGSPSPPDRPVVTEALSSLRSSHSSPREEMKLSRDFVLQTQSPFSISSEAVVELAQAAETGPSSASAPRDTGDSLSRVPSRRAPGGSAELKSSRTGLKSEKVSCGSFNSEFSKQSGLSLNREASLEFSEEGSDLDLTLTISPPASPRDEEPEAETEQRLEALGPHLELREKAFSPQGGPRVADRDVNPAGTVSVRAPANEDRSSDTSQTATFVLSKETCALEVAEEMHVALDFPFGSLIEEVSPASSPDPQAPGTDAQTARAVSSCGAELSEARRESGDPPSQMESVDMAVTEKDNSLAGPAPPVGQDNLPRAPPVPFPAETPLVFRRPPERRGTCSALPGAVPEQAVPGERDQGPPLSARAPSWDAEPKQPASAARYRDAPGNQATSGSPLQPAAVEDRSPHVSHLIWDSRDPPLSPRHILETQPLAAAFVSAAAPADASLSLGEQAGPERPPEHLLGGDLKTDGRCYILVRSLRSGSVDSAAGPGGLVHAERPAAGLCSGPGAAGPGPQTQEISAVRMARLLQNNGPEAGTLGDSVDLGGAGPQWRPPSPPAFHRLRAGSAGPSRDLVGHGPLPPCSRADAPPDTAAAGLGGGQAPSASFVPGSRAPLGGGVSGAESAGEGPRAPRDPAPPGLRANPDIHYEPLSGDSDQDSLGECAKPREDARDSCAPRCRRAEDKGASDESDDPFLGLSHSDDDEDWGRSRRLPGLEPARRVPAFVRVRDLRGVARAYANFPVTRARSRAPGGVAQGASLRLRTDTGPGAADLTRSTLDLEYLRFAHKLKQMVKRGDARRSGPSAPAFPKAAPAPAPASRSRSPLVVTVVHSDPRPPGRRARGHTPHRMAQASSSWKERGAHGRSPLPNSGGSQAAALHLHKLKYNSPWKDSRGDISLILSEFAEFNKVLLGSGSQAAPRDPEPSEAAAPAPGPPCPRPASYEDLVADLCASLRVKLERVVKEACARTFLFHLVETADESFFLRTKNLLRKGGHAEMEPQRFCQAFPRENDTLLVIIRNEDIASHLHQIPALLRLKRLPGVLFAGVDSPEDVLHHTYQELFRAGGFVVSDGRILDSVSLVQLKEIVRILEKLNASGRWKWLLHYREIKKLKEDVRVDSTACKKNLILKSYQSANILELLHYHECDSRPSTKAEHLQCLLTLQIQRVHARFAVFLTEKPALSREVFEDSGILVTDVNDFIENMQKVAAPFRSSYW", "length": 2584, "header": "tr|A0A287AYP4-1|A0A287AYP4_PIG Computationally mapped isoform of Transcription activation suppressor family member 2 OS=Sus scrofa OX=9823 GN=TASOR2 PE=3 SV=2 CANONICAL=A0A287AP22-1" }, "locus": { "chromosome": "10", "start_pos": 65247458, "end_pos": 65198617, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065616.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065616.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049073.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049073.2" } ] } }, { "isoform_ac": "A0A287BD37-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22/entry#A0A287BD37-1", "sequence": { "sequence": "MTCLWHLIIFSLYSTKLFTKKKKQVTILRKNLKKLAGFCCLRPKIRQSWYVSVDSVLAAVLSPLWVTQGKGRVRFVSENYTSNYTSPSSGYDCHVAVNTHKVSHRTSHFRTFELSQYYLYELSGSTVAERPRQICPYVIVAFQYRDPKTMAAPPHIPKSFFLPSLSTVFISPWKGKLIIQGYLLCDITLWSSYGTGVPTQIPHELDFRYVMKVSSLKKTLPEAAFRKQNYLEHKVCCQDMCFSMYEVELSNKQGGGVDKLTEYIKREQLAIIKCLEDREFFILLTSSALIAETNLGEEQAGLRGLHLCHSSAPAGLKDLKVEDDFSLKVIPILPALHCALLEAKKSFTEKDICLNKLVKHNFQELYKVDKSPALTAASQDGIKETAFFGKVSSDFDLVPPAEKCPLEAWSQLKSYFSDPSGYILEVSTALDLLAERPQSPCISDGICDAGFSLAMTPDPEFHDSETEVKKETETEKNSEEVFKARQGAVVPLSPASNLRVQPKRKASTLPTVQSKRVSLCRPFPKRTPAGASKGPGSPTTLQLVKGQFPQKRKRGAEVLAAQFVQTAKSDRKNQDAPISEDVPVAANAKRARRREKSPVTAAPRAEPPVRRSPQKQRASLVQGEEHPRISGQPPAAKEETASQLQSEISEGQKDVISINTAQPETLSVAQKEPPEDCIVTCDSRALNMLADLALSAATSTAPSSEPRNFPCSSELPLRAALLSQEPALRSTSDHEYHRGVKSQKGGPFSTPSSDKSDAAADPRLGPEEESAVAGSQAPAEAPAALPEEALEGSDSSQSSFVAVEHSYALLLAEHSRRHLQQRGALGPAFAKSGTKGPEAGTPVGKVMPFRHQHSTSPLQKLPQDPALRRRARLLPSGLKDFPCSHTVFSCDGSFKVTFRCEADYVFSLDSKYTNNPLEKTVLRALHGPWNTDLPDNVEEVKLLLHMWVALFYSSQNQVMRSSRKVVEHSNPAKYVSINSTLDPIAFSELQEASGAEGCLDPLSETVDAPRGLPAPPSFPDTDSLLPFAKPPPRRGLELWVQSEQRDLFAAEGHAEAPEGQNLIYSCDTEITGEKAEPESSDKLEKSNLVLSRIGSTQTNGPSIPGEDKSFEPLDGARVAYSDALTQTTLPRTYDGISSPSMICQKSVYSALESRVDLFHAKRQTKTGALQGLIQHSHPLNKECQPSLERKDDVGYVMINLEPVSLTFEKNTYVPIETEAVNRADTPAALSKQVSPAPDLSHAVPTFAEAQGLGDIPSPAVTGQKGATYLHASPASRETLVKEMRSLQKDRPVAGSPSPPDRPVVTEALSSLRSSHSSPREEMKLSRDFVLQTQSPFSISSEAVVELAQAAETGPSSASAPRDTGDSLSRVPSRRAPGGSAELKSSRTGLKSEKVSCGSFNSEFSKQSGLSLNREASLEFSEEGSDLDLTLTISPPASPRDEEPEAETEQRLEALGPHLELREKAFSPQGGPRVADRDVNPAGTVSVRAPANEDRSSDTSQTATFVLSKETCALEVAEEMHVALDFPFGSLIEEVSPASSPDPQAPGTDAQTARAVSSCGAELSEARRESGDPPSQMESVDMAVTEKDNSLAGPAPPVGQDNLPRAPPVPFPAETPLVFRRPPERRGTCSALPGAVPEQAVPGERDQGPPLSARAPSWDAEPKQPASAARYRDAPGNQATSGSPLQPAAVEDRSPHVSHLIWDSRDPPLSPRHILETQPLAAAFVSAAAPADASLSLGEQAGPERPPEHLLGGDLKTDGRCYILVRSLRSGSVDSAAGPGGLVHAERPAAGLCSGPGAAGPGPQTQEISAVRMARLLQNNGPEAGTLGDSVDLGGAGPQWRPPSPPAFHRLRAGSAGPSRDLVGHGPLPPCSRADAPPDTAAAGLGGGQAPSASFVPGSRAPLGGGVSGAESAGEGPRAPRDPAPPGLRANPDIHYEPLSGDSDQDSLGECAKPREDARDSCAPRCRRAEDKGASDESDDPFLGLSHSDDDEDWGRSRRLPGLEPARRVPAFVRVRDLRGVARAYANFPVTRARSRAPGGVAQGASLRLRTDTGPGAADLTRSTLDLEYLRFAHKLKQMVKRGDARRSGPSAPAFPKAAPAPAPASRSRSPLVVTVVHSDPRPPGRRARGHTPHRMAQASSSWKERGAHGRSPLPNSGGSQAAALHLHKLKYNSPWKDSRGDISLILSEFAEFNKVLLGSGSQAAPRDPEPSEAAAPAPGPPCPRPASYEDLVADLCASLRVKLERVVKEACARTFLFHLVETADESFFLRTKNLLRKGGHAEMEPQRFCQAFPRENDTLLVIIRNEDIASHLHQIPALLRLKRLPGVLFAGVDSPEDVLHHTYQELFRAGGFVVSDGRILDSVSLVQLKEIVRILEKLNASGRWKWLLHYREIKKLKEDVRVDSTACKKNLILKSYQSANILELLHYHECDSRPSTKAEHLQCLLTLQIQRVHARFAVFLTEKPALSREVFEDSGILVTDVNDFIENMQKVAAPFRSSYW", "length": 2500, "header": "tr|A0A287BD37-1|A0A287BD37_PIG Computationally mapped isoform of Transcription activation suppressor family member 2 OS=Sus scrofa OX=9823 GN=TASOR2 PE=3 SV=3 CANONICAL=A0A287AP22-1" }, "locus": { "chromosome": "10", "start_pos": 65246689, "end_pos": 65198617, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045469.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045469.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054007.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054007.3" } ] } }, { "isoform_ac": "A0A5G2R339-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22/entry#A0A5G2R339-1", "sequence": { "sequence": "MGVRAILALSSGDLSKVNTVELCIMRTRCLVNIYLYSRYARKRTIHCVIQFFLFRFSIYDINREQDYGKHSGGILGDSELRPPSHLPSLLEKTETGLIPAKSGYQTKCFFETVSLCSDSLFQRAVSILRTSYLDSASEHGFQYSQVTLVKNDIFLNEYKTFYQEKKASDYTQEELEETCGFLLFETENQGRVRFVSENYTSNYTSPSSGYDCHVAVNTHKVSHRTSHFRTFELSQYYLYELSGSTVAERPRQICPYVIVAFQYRDPKTMAAPPHIPKSFFLPSLSTVFISPWKGKLIIQGYLLCDITLWSSYGTGVPTQIPHELDFRYVMKVSSLKKTLPEAAFRKQNYLEHKVCCQDMCFSMYEVELSNKQGGGVDKLTEYIKREQLAIIKCLEDREFFILLTSSALIAETNLGEEQAGLRGLHLCHSSAPAGLKDLKVEDDFSLKVIPILPALHCALLEAKKSFTEKDICLNKLVKHNFQELYKVDKSPALTAASQDGIKETAFFGKVSSDFDLVPPAEKCPLEAWSQLKSYFSDPSGYILEVSTALDLLAERPQSPCISDGICDAGFSLAMTPDPEFHDSETEVKKETETEKNSEEVFKARQGAVVPLSPASNLRVQPKRKASTLPTVQSKRVSLCRPFPKRTPAGASKGPGSPTTLQLVKGQFPQKRKRGAEVLAAQFVQTAKSDRKNQDAPISEDVPVAANAKRARRREKSPVTAAPRAEPPVRRSPQKQRASLVQGEEHPRISGQPPAAKEETASQLQSEISEGQKDVISINTAQPETLSVAQKEPPEDCIVTCDSRALNMLADLALSAATSTAPSSEPRNFPCSSELPLRAALLSQEPALRSTSDHEYHRGVKSQKGGPFSTPSSDKSDAAADPRLGPEEESAVAGSQAPAEAPAALPEEALEGSDSSQSSFVAVEHSYALLLAEHSRRHLQQRGALGPAFAKSGTKGPEAGTPVGKVMPFRHQHSTSPLQKLPQDPALRRRARLLPSGLKDFPCSHTVFSCDGSFKVTFRCEADYVFSLDSKYTNNPLEKTVLRALHGPWNTDLPDNVEEVKLLLHMWVALFYSSQNQVMRSSRKVVEHSNPAKYVSINSTLDPIAFSELQEASGAEGCLDPLSETVDAPRGLPAPPSFPDTDSLLPFAKPPPRRGLELWVQSEQRDLFAAEGHAEAPEGQNLIYSCDTEITGEKAEPESSDKLEKSNLVLSRIGSTQTNGPSIPGEDKSFEPLDGARVAYSDALTQTTLPRTYDGISSPSMICQKSVYSALESRVDLFHAKRQTKTGALQGLIQHSHPLNKECQPSLERKDDVGYVMINLEPVSLTFEKNTYVPIETEAVNRADTPAALSKQVSPAPDLSHAVPTFAEAQGLGDIPSPAVTGQKGATYLHASPASRETLVKEMRSLQKDRPVAGSPSPPDRPVVTEALSSLRSSHSSPREEMKLSRDFVLQTQSPFSISSEAVVELAQAAETGPSSASAPRDTGDSLSRVPSRRAPGGSAELKSSRTGLKSEKVSCGSFNSEFSKQSGLSLNREASLEFSEEGSDLDLTLTISPPASPRDEEPEAETEQRLEALGPHLELREKAFSPQGGPRVADRDVNPAGTVSVRAPANEDRSSDTSQTATFVLSKETCALEVAEEMHVALDFPFGSLIEEVSPASSPDPQAPGTDAQTARAVSSCGAELSEARRESGDPPSQMESVDMAVTEKDNSLAGPAPPVGQDNLPRAPPVPFPAETPLVFRRPPERRGTCSALPGAVPEQAVPGERDQGPPLSARAPSWDAEPKQPASAARYRDAPGNQATSGSPLQPAAVEDRSPHVSHLIWDSRDPPLSPRHILETQPLAAAFVSAAAPADASLSLGEQAGPERPPEHLLGGDLKTDGRCYILVRSLRSGSVDSAAGPGGLVHAERPAAGLCSGPGAAGPGPQTQEISAVRMARLLQNNGPEAGTLGDSVDLGGAGPQWRPPSPPAFHRLRAGSAGPSRDLVGHGPLPPCSRADAPPDTAAAGLGGGQAPSASFVPGSRAPLGGGVSGAESAGEGPRAPRDPAPPGLRANPDIHYEPLSGDSDQDSLGECAKPREDARDSCAPRCRRAEDKGASDESDDPFLGLSHSDDDEDWGRSRRLPGLEPARRVPAFVRVRDLRGVARAYANFPVTRARSRAPGGVAQGASLRLRTDTGPGAADLTRSTLDLEYLRFAHKLKQMVKRGDARRSGPSAPAFPKAAPAPAPASRSRSPLVVTVVHSDPRPPGRRARGHTPHRMAQASSSWKERGAHGRSPLPNSGGSQAAALHLHKLKYNSPWKDSRGDISLILSEFAEFNKVLLGSGSQAAPRDPEPSEAAAPAPGPPCPRPASYEDLVADLCASLRVKLERVVKEACARTFLFHLVETADESFFLRTKNLLRKGGHAEMEPQRFCQAFPRENDTLLVIIRNEDIASHLHQIPALLRLKRLPGVLFAGVDSPEDVLHHTYQELFRAGGFVVSDGRILDSVSLVQLKEIVRILEKLNASGRWKWLLHYREIKKLKEDVRVDSTACKKNLILKSYQSANILELLHYHECDSRPSTKAEHLQCLLTLQIQRVHARFAVFLTEKPALSREVFEDSGILVTDVNDFIENMQKVAAPFRSSYW", "length": 2619, "header": "tr|A0A5G2R339-1|A0A287AP22_PIG Computationally mapped isoform of Transcription activation suppressor family member 2 OS=Sus scrofa OX=9823 GN=TASOR2 PE=3 SV=2 CANONICAL=A0A287AP22-1" }, "locus": { "chromosome": "10", "start_pos": 65252447, "end_pos": 65198617, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073977.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073977.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068612.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068612.2" } ] } }, { "isoform_ac": "A0A5G2R8Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22/entry#A0A5G2R8Q9-1", "sequence": { "sequence": "MAAPPHIPKIFISPWKGKLIIQGYLLCDITLWSSYGTGVPTQIPHELDFRYVMKVSSLKKTLPEAAFRKQNYLEHKVCCQDMCFSMYEVELSNKQGGGVDKLTEYIKREQLVRIIHLKCNYYFSLKLKNQYLIISWLCLDYLGEEQAGLRGLHLCHSSAPAGLKDLKVEDDFSLKVIPILPALHCALLEAKKSFTEKDICLNKLVKHNFQELYKVDKSPALTAASQDGIKETAFFGKVSSDFDLVPPAEKCPLEAWSQLKSYFSDPSGYILEVSTALDLLAERPQSPCISDGICDAGFSLAMTPDPEFHDSETEVKKETETEKNSEEVFKARQGAVVPLSPASNLRVQPKRKASTLPTVQSKRVSLCRPFPKRTPAGASKGPGSPTTLQLVKGQFPQKRKRGAEVLAAQFVQTAKSDRKNQDAPISEDVPVAANAKRARRREKSPVTAAPRAEPPVRRSPQKQRASLVQGEEHPRISGQPPAAKEETASQLQSEISEGQKDVISINTAQPETLSVAQKEPPEDCIVTCDSRALNMLADLALSAATSTAPSSEPRNFPCSSELPLRAALLSQEPALRSTSDHEYHRGVKSQKGGPFSTPSSDKSDAAADPRLGPEEESAVAGSQAPAEAPAALPEEALEGSDSSQSSFVAVEHSYALLLAEHSRRHLQQRGALGPAFAKSGTKGPEAGTPVGKVMPFRHQHSTSPLQKLPQDPALRRRARLLPSGLKDFPCSHTVFSCDGSFKVTFRCEADYVFSLDSKYTNNPLEKTVLRALHGPWNTDLPDNVEEVKLLLHMWVALFYSSQNQVMRSSRKVVEHSNPAKYVSINSTLDPIAFSELQEASGAEGCLDPLSETVDAPRGLPAPPSFPDTDSLLPFAKPPPRRGLELWVQSEQRDLFAAEGHAEAPEGQNLIYSCDTEITGEKAEPESSDKLEKSNLVLSRIGSTQTNGPSIPGEDKSFEPLDGARVAYSDALTQTTLPRTYDGISSPSMICQKSVYSALESRVDLFHAKRQTKTGALQGLIQHSHPLNKECQPSLERKDDVGYVMINLEPVSLTFEKNTYVPIETEAVNRADTPAALSKQVSPAPDLSHAVPTFAEAQGLGDIPSPAVTGQKGATYLHASPASRETLVKEMRSLQKDRPVAGSPSPPDRPVVTEALSSLRSSHSSPREEMKLSRDFVLQTQSPFSISSEAVVELAQAAETGPSSASAPRDTGDSLSRVPSRRAPGGSAELKSSRTGLKSEKVSCGSFNSEFSKQSGLSLNREASLEFSEEGSDLDLTLTISPPASPRDEEPEAETEQRLEALGPHLELREKAFSPQGGPRVADRDVNPAGTVSVRAPANEDRSSDTSQTATFVLSKETCALEVAEEMHVALDFPFGSLIEEVSPASSPDPQAPGTDAQTARAVSSCGAELSEARRESGDPPSQMESVDMAVTEKDNSLAGPAPPVGQDNLPRAPPVPFPAETPLVFRRPPERRGTCSALPGAVPEQAVPGERDQGPPLSARAPSWDAEPKQPASAARYRDAPGNQATSGSPLQPAAVEDRSPHVSHLIWDSRDPPLSPRHILETQPLAAAFVSAAAPADASLSLGEQAGPERPPEHLLGGDLKTDGRCYILVRSLRSGSVDSAAGPGGLVHAERPAAGLCSGPGAAGPGPQTQEISAVRMARLLQNNGPEAGTLGDSVDLGGAGPQWRPPSPPAFHRLRAGSAGPSRDLVGHGPLPPCSRADAPPDTAAAGLGGGQAPSASFVPGSRSAGEGPRAPRDPAPPGLRANPDIHYEPLSGDSDQDSLGECAKPREDARDSCAPRCRRAEDKGASDESDDPFLGLSHSDDDEDWGRSRRLPGLEPARRVPAFVRVRDLRGVARAYANFPVTRARSRAPGGVAQGASLRLRTDTGPGAADLTRSTLDLEYLRFAHKLKQMVKRGDARRSGPSAPAFPKAAPAPAPASRSRSPLVVTVVHSDPRPPGRRARGHTPHRMAQASSSWKERGAHGRSPLPNSGGSQAAALHLHKLKYNSPWKDSRGDISLILSEFAEFNKVLLEPSEAAAPAPGPPCPRPASYEDLVADLCASLRVKLERVVKEACARTFLFHLVETADESFFLRTKNLLRKGGHAEMEPQRFCQAFPRENDTLLVIIRNEDIASHLHQIPALLRLKRLPGVLFAGVDSPEDVLHHTYQELFRAGGFVVSDGRILDSVSLVQLKEIVRILEKLNASGRWKWLLHYREIKKLKEDVRVDSTACKKNLILKSYQSANILELLHYHECDSRPSTKAEHLQCLLTLQIQRVHARFAVFLTEKPALSREVFEDSGILVTDVNDFIENMQKVAAPFRSSYW", "length": 2325, "header": "tr|A0A5G2R8Q9-1|A0A287AP22_PIG Computationally mapped isoform of Transcription activation suppressor family member 2 OS=Sus scrofa OX=9823 GN=TASOR2 PE=3 SV=2 CANONICAL=A0A287AP22-1" }, "locus": { "chromosome": "10", "start_pos": 65238189, "end_pos": 65198617, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078793.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078793.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070508.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070508.2" } ] } }, { "isoform_ac": "A0A8W4F6Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22/entry#A0A8W4F6Y5-1", "sequence": { "sequence": "MAAPPHIPKSLLELKENVFISPWKGKLIIQGYLLCDITLWSSYGTGVPTQIPHELDFRYVMKVSSLKKTLPEAAFRKQNYLEHKVCCQDMCFSMYEVELSNKQGGGVDKLTEYIKREQLVRIIHLKCNYYFSLKLKNQYLIIKEQAGLRGLHLCHSSAPAGLKDLKVEDDFSLKVIPILPALHCALLEAKKSFTEKDICLNKLVKHNFQELYKVDKSPALTAASQDGIKETAFFGKVSSDFDLVPPAEKCPLEAWSQLKSYFSDPSGYILEVSTALDLLAERPQSPCISDGICDAGFSLAMTPDPEFHDSETEVKKETETEKNSEEVFKARQGAVVPLSPASNLRVQPKRKASTLPTVQSKRVSLCRPFPKRTPAGASKGPGSPTTLQLVKGQFPQKRKRGAEVLAAQFVQTAKSDRKNQDAPISEDVPVAANAKRARRREKSPVTAAPRAEPPVRRSPQKQRASLVQGEEHPRISGQPPAEETASQLQSEISEGQKDVISINTAQPETLSVAQKEPPEDCIVTCDSRALNMLADLALSAATSTAPSSEPRNFPCSSELPLRAALLSQEPALRSTSDHEYHRGVKSQKGGPFSTPSSDKSDAAADPRLGPEEESAVAGSQAPAEAPAALPEEALEGSDSSQSSFVAVEHSYALLLAEHSRRHLQQRGALGPAFAKSGTKGPEAGTPVGKVMPFRHQHSTSPLQKLPQDPALRRRARLLPSGLKDFPCSHTVFSCDGSFKVTFRCEADYVFSLDSKYTNNPLEKTVLRALHGPWNTDLPDNVEEVKLLLHMWVALFYSSQNQVMRSSRKVVEHSNPAKYVSINSTLDPIAFSELQEASGAEGCLDPLSETVDAPRGLPAPPSFPDTDSLLPFAKPPPRRGLELWVQSEQRDLFAAEGHAEAPEGQNLIYSCDTEITGEKAEPESSDKLEKSNLVLSRIGSTQTNGPSIPGEDKSFEPLDGARVAYSDALTQTTLPRTYDGISSPSMICQKSVYSALESRVDLFHAKRQTKTGALQGLIQHSHPLNKECQPSLERKDDVGYVMINLEPVSLTFEKNTYVPIETEAVNRADTPAALSKQVSPAPDLSHAVPTFAEAQGLGDIPSPAVTGQKGATYLHASPASRETLVKEMRSLQKDRPVAGSPSPPDRPVVTEALSSLRSSHSSPREEMKLSRDFVLQTQSPFSISSEAVVELAQAAETGPSSASAPRDTGDSLSRVPSRRAPGGSAELKSSRTGLKSEKVSCGSFNSEFSKQSGLSLNREASLEFSEEGSDLDLTLTISPPASPRDEEPEAETEQRLEALGPHLELREKAFSPQGGPRVADRDVNPAGTVSVRAPANEDRKTCALEVAEEMHVALDFPFGSLIEEVSPASSPDPQAPGTDAQTARAVSSCGAELSEARRESGDPPSQMESVDMAVTEKDNSLAGPAPPVGQDNLPRAPPVPFPAETPLVFRRPPERRGTCSALPGAVPEQAVPGERDQGPPLSARAPSWDAEPKQPASAARYRDAPGNQATSGSPLQPAAVEDRSPHVSHLIWDSRDPPLSPRHILETQPLAAAFVSAAAPADASLSLGEQAGPERPPEHLLGGDLKTDGRCYILVRSLRSGSVDSAAGPGGLVHAERPAAGLCSGPGAAGPGPQTQEISAVRMARLLQNNGPEAGTLGDSVDLGGAGPQWRPPSPPAFHRLRAGSAGPSRDLVGHGPLPPCSRADAPPDTAAAGLGGGQAPSASFVPGSRAPLGGGVSGAESAGEGPRAPRDPAPPGLRANPDIHYEPLSGDSDQDSLGECAKPREDARDSCAPRCRRAEDKGASDESDDPFLGLSHSDDDEDWGRSRRLPGLEPARRVPAFVRVRDLRGVARAYANFPVTRARSRAPGGVAQGASLRLRTDTGPGAADLTRSTLDLEYLRFAHKLKQMVKRGDARRSGPSAPAFPKAAPAPAPASRSRSPLVVTVVHSDPRPPGRRARGHTPHRMAQASSSWKERGAHGRSPLPNSGGSQAAALHLHKLKYNSPWKDSRGDISLILSEFAEFNKVLLGSGSQAAPRDPEPSEAAAPAPGPPCPRPASYEDLVADLCASLRVKLERVVKEACARTFLFHLVETADESFFLRTKNLLRKGGHAEMEPQRFCQAFPRENDTLLVIIRNEDIASHLHQIPALLRLKRLPGVLFAGVDSPEDVLHHTYQELFRAGGFVVSDGRILDSVSLVQLKEIVRILEKLNASGRWKWLLHYREIKKLKEDVRVDSTACKKNLILKSYQSANILELLHYHECDSRPSTKAEHLQCLLTLQIQRVHARFAVFLTEKPALSREVFEDSGILVTDVNDFIENMQKVAAPFRSSYW", "length": 2330, "header": "tr|A0A8W4F6Y5-1|A0A287AP22_PIG Computationally mapped isoform of Transcription activation suppressor family member 2 OS=Sus scrofa OX=9823 GN=TASOR2 PE=3 SV=1 CANONICAL=A0A287AP22-1" }, "locus": { "chromosome": "10", "start_pos": 65238189, "end_pos": 65198617, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105236.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105236.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074980.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074980.1" } ] } }, { "isoform_ac": "A0A8W4FLU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22/entry#A0A8W4FLU4-1", "sequence": { "sequence": "MAAPPHIPKSFFLPSLSTVFISPWKGKLIIQGYLLCDITLWSSYGTGVPTQIPHELDFRYVMKVSSLKKTLPEAAFRKQNYLEHKVCCQDMCFSMYEVELSNKQGGGVDKLTEYIKREQLAIIKCLEDREFFILLTSSALIAETNLGEEQAGLRGLHLCHSSAPAGLKDLKVEDDFSLKVIPILPALHCALLEAKKSFTEKDICLNKLVKHNFQELYKVDKSPALTAASQDGIKETAFFGKVSSDFDLVPPAEKCPLEAWSQLKSYFSDPSGYILEVSTALDLLAERPQSPCISDGICDAGFSLAMTPDPEFHDSETEVKKETETEKNSEEVFKARQGAVVPLSPASNLRVQPKRKASTLPTVQSKRVSLCRPFPKRTPAGASKGPGSPTTLQLVKGQFPQKRKRGAEVLAAQFVQTAKSDRKNQDAPISEDVPVAANAKRARRREKSPVTAAPRAEPPVRRSPQKQRASLVQGRWAGVQPAERKETASQLQSEISEGQKDVISINTAQPETLSVAQKEPPEDCIVTCDSRALNMLADLALSAATSTAPSSEPRNFPCSSELPLRAALLSQEPALRSTSDHEYHRGVKSQKGGPFSTPSSDKSDAAADPRLGPEEESAVAGSQAPAEAPAALPEEALEGSDSSQSSFVAVEHSYALLLAEHSRRHLQQRGALGPAFAKSGTKGPEAGTPVGKVMPFRHQHSTSPLQKLPQDPALRRRARLLPSGLKDFPCSHTVFSCDGSFKVTFRCEADYVFSLDSKYTNNPLEKTVLRALHGPWNTDLPDNVEEVKLLLHMWVALFYSSQNQVMRSSRKVVEHSNPAKYVSINSTLDPIAFSELQEASGAEGCLDPLSETVDAPRGLPAPPSFPDTDSLLPFAKPPPRRGLELWVQSEQRDLFAAEGHAEAPEGQNLIYSCDTEITGEKAEPESSDKLEKSNLVLSRIGSTQTNGPSIPGEDKSFEPLDGARVAYSDALTQTTLPRTYDGISSPSMICQKSVYSALESRVDLFHAKRQTKTGALQGLIQHSHPLNKECQPSLERKDDVGYVMINLEPVSLTFEKNTYVPIETEAVNRADTPAALSKQVSPAPDLSHAVPTFAEAQGLGDIPSPAVTGQKGATYLHASPASRETLVKEMRSLQKDRPVAGSPSPPDRPVVTEALSSLRSSHSSPREEMKLSRDFVLQTQSPFSISSEAVVELAQAAETGPSSASAPRDTGDSLSRVPSRRAPGGSAELKSSRTGLKSEKVSCGSFNSEFSKQSGLSLNREASLEFSEEGSDLDLTLTISPPASPRDEEPEAETEQRLEALGPHLELREKAFSPQGGPRVADRDVNPAGTVSVRAPANEDRKTCALEVAEEMHVALDFPFGSLIEEVSPASSPDPQAPGTDAQTARAVSSCGAELSEARRESGDPPSQMESVDMAVTEKDNSLAGPAPPVGQDNLPRAPPVPFPAETPLVFRRPPERRGTCSALPGAVPEQAVPGERDQGPPLSARAPSWDAEPKQPASAARYRDAPGNQATSGSPLQPAAVEDRSPHVSHLIWDSRDPPLSPRHILETQPLAAAFVSAAAPADASLSLGEQAGPERPPEHLLGGDLKTDGRCYILVRSLRSGSVDSAAGPGGLVHAERPAAGLCSGPGAAGPGPQTQEISAVRMARLLQNNGPEAGTLGDSVDLGGAGPQWRPPSPPAFHRLRAGSAGPSRDLVGHGPLPPCSRADAPPDTAAAGLGGGQAPSASFVPGSRAPLGGGVSGAESAGEGPRAPRDPAPPGLRANPDIHYEPLSGDSDQDSLGECAKPREDARDSCAPRCRRAEDKGASDESDDPFLGLSHSDDDEDWGRSRRLPGLEPARRVPAFVRVRDLRGVARAYANFPVTRARSRAPGGVAQGASLRLRTDTGPGAADLTRSTLDLEYLRFAHKLKQMVKRGDARRSGPSAPAFPKAAPAPAPASRSRSPLVVTVVHSDPRPPGRRARGHTPHRMAQASSSWKERGAHGRSPLPNSGGSQAAALHLHKLKYNSPWKDSRGDISLILSEFAEFNKVLLGSGSQAAPRDPEPSEAAAPAPGPPCPRPASYEDLVADLCASLRVKLERVVKEACARTFLFHLVETADESFFLRTKNLLRKGGHAEMEPQRFCQAFPRENDTLLVIIRNEDIASHLHQIPALLRLKRLPGVLFAGVDSPEDVLHHTYQELFRAGGFVVSDGRILDSVSLVQLKEIVRILEKLNASGRWKWLLHYREIKKLKEDVRVDSTACKKNLILKSYQSANILELLHYHECDSRPSTKAEHLQCLLTLQIQRVHARFAVFLTEKPALSREVFEDSGILVTDVNDFIENMQKVAAPFRSSYW", "length": 2333, "header": "tr|A0A8W4FLU4-1|A0A287AP22_PIG Computationally mapped isoform of Transcription activation suppressor family member 2 OS=Sus scrofa OX=9823 GN=TASOR2 PE=3 SV=1 CANONICAL=A0A287AP22-1" }, "locus": { "chromosome": "10", "start_pos": 65238189, "end_pos": 65198617, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099572.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099572.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079868.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079868.1" } ] } }, { "isoform_ac": "F1RUK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22/entry#F1RUK9-1", "sequence": { "sequence": "MAAPPHIPKSLLELKENVFISPWKGKLIIQGYLLCDITLWSSYGTGVPTQIPHELDFRYVMKVSSLKKTLPEAAFRKQNYLEHKVCCQDMCFSMYEVELSNKQGGGVDKLTEYIKREQLAIIKCLEDREFFILLTSSALIAETNLGEEQAGLRGLHLCHSSAPAGLKDLKVEDDFSLKVIPILPALHCALLEAKKSFTEKDICLNKLVKHNFQELYKVDKSPALTAASQDGIKETAFFGKVSSDFDLVPPAEKCPLEAWSQLKSYFSDPSGYILEVSTALDLLAERPQSPCISDGICDAGFSLAMTPDPEFHDSETEVKKETETEKNSEEVFKARQGAVVPLSPASNLRVQPKRKASTLPTVQSKRVSLCRPFPKRTPAGASKGPGSPTTLQLVKGQFPQKRKRGAEVLAAQFVQTAKSDRKNQDAPISEDVPVAANAKRARRREKSPVTAAPRAEPPVRRSPQKQRASLVQGEEHPRISGQPPAAKEETASQLQSEISEGQKDVISINTAQPETLSVAQKEPPEDCIVTCDSRALNMLADLALSAATSTAPSSEPRNFPCSSELPLRAALLSQEPALRSTSDHEYHRGVKSQKGGPFSTPSSDKSDAAADPRLGPEEESAVAGSQAPAEAPAALPEEALEGSDSSQSSFVAVEHSYALLLAEHSRRHLQQRGALGPAFAKSGTKGPEAGTPVGKVMPFRHQHSTSPLQKLPQDPALRRRARLLPSGLKDFPCSHTVFSCDGSFKVTFRCEADYVFSLDSKYTNNPLEKTVLRALHGPWNTDLPDNVEEVKLLLHMWVALFYSSQNQVMRSSRKVVEHSNPAKYVSINSTLDPIAFSELQEASGAEGCLDPLSETVDAPRGLPAPPSFPDTDSLLPFAKPPPRRGLELWVQSEQRDLFAAEGHAEAPEGQNLIYSCDTEITGEKAEPESSDKLEKSNLVLSRIGSTQTNGPSIPGEDKSFEPLDGARVAYSDALTQTTLPRTYDGISSPSMICQKSVYSALESRVDLFHAKRQTKTGALQGLIQHSHPLNKECQPSLERKDDVGYVMINLEPVSLTFEKNTYVPIETEAVNRADTPAALSKQVSPAPDLSHAVPTFAEAQGLGDIPSPAVTGQKGATYLHASPASRETLVKEMRSLQKDRPVAGSPSPPDRPVVTEALSSLRSSHSSPREEMKLSRDFVLQTQSPFSISSEAVVELAQAAETGPSSASAPRDTGDSLSRVPSRRAPGGSAELKSSRTGLKSEKVSCGSFNSEFSKQSGLSLNREASLEFSEEGSDLDLTLTISPPASPRDEEPEAETEQRLEALGPHLELREKAFSPQGGPRVADRDVNPAGTVSVRAPANEDRSSDTSQTATFVLSKETCALEVAEEMHVALDFPFGSLIEEVSPASSPDPQAPGTDAQTARAVSSCGAELSEARRESGDPPSQMESVDMAVTEKDNSLAGPAPPVGQDNLPRAPPVPFPAETPLVFRRPPERRGTCSALPGAVPEQAVPGERDQGPPLSARAPSWDAEPKQPASAARYRDAPGNQATSGSPLQPAAVEDRSPHVSHLIWDSRDPPLSPRHILETQPLAAAFVSAAAPADASLSLGEQAGPERPPEHLLGGDLKTDGRCYILVRSLRSGSVDSAAGPGGLVHAERPAAGLCSGPGAAGPGPQTQEISAVRMARLLQNNGPEAGTLGDSVDLGGAGPQWRPPSPPAFHRLRAGSAGPSRDLVGHGPLPPCSRADAPPDTAAAGLGGGQAPSASFVPGSRAPLGGGVSGAESAGEGPRAPRDPAPPGLRANPDIHYEPLSGDSDQDSLGECAKPREDARDSCAPRCRRAEDKGASDESDDPFLGLSHSDDDEDWGRSRRLPGLEPARRVPAFVRVRDLRGVARAYANFPVTRARSRAPGGVAQGASLRLRTDTGPGAADLTRSTLDLEYLRFAHKLKQMVKRGDARRSGPSAPAFPKAAPAPAPASRSRSPLVVTVVHSDPRPPGRRARGHTPHRMAQASSSWKERGAHGRSPLPNSGGSQAAALHLHKLKYNSPWKDSRGDISLILSEFAEFNKVLLGSGSQAAPRDPEPSEAAAPAPGPPCPRPASYEDLVADLCASLRVKLERVVKEACARTFLFHLVETADESFFLRTKNLLRKGGHAEMEPQRFCQAFPRENDTLLVIIRNEDIASHLHQIPALLRLKRLPGVLFAGVDSPEDVLHHTYQELFRAGGFVVSDGRILDSVSLVQLKEIVRILEKLNASGRWKWLLHYREIKKLKEDVRVDSTACKKNLILKSYQSANILELLHYHECDSRPSTKAEHLQCLLTLQIQRVHARFAVFLTEKPALSREVFEDSGILVTDVNDFIENMQKVAAPFRSSYW", "length": 2350, "header": "tr|F1RUK9-1|A0A287AP22_PIG Computationally mapped isoform of Transcription activation suppressor family member 2 OS=Sus scrofa OX=9823 GN=TASOR2 PE=3 SV=5 CANONICAL=A0A287AP22-1" }, "locus": { "chromosome": "10", "start_pos": 65238189, "end_pos": 65198617, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012188.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012188.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011876.5", "url": "https://www.ensembl.org/id/ENSSSCP00000011876.5" } ] } }, { "isoform_ac": "I3LNF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22/entry#I3LNF1-1", "sequence": { "sequence": "MGVRAILALSSGDFIYDINREQDYGKHSGGILGDSELRPPSHLPSLLEKTETGLIPAKIFETVSLCSDSLFQRAVSILRTSYLDSASEHGFQYSQVTLVKNDIFLNEYKTFYQEKKASDYTQEELEETCGFLLFETENQAKLVCQRGLCVGSSALTTLGDPGKGVYISKYSDYLQARPWYHGKSGYVVIFNLIKYYLYELSGSTVAERPRQICPYVIVAFQYRDPKTMAAPPHIPKSFFLPSLSTVFISPWKGKLIIQGYLLCDITLWSSYGTGVPTQIPHELDFRYVMKVSSLKKTLPEAAFRKQNYLEHKVCCQDMCFSMYEVELSNKQGGGVDKLTEYIKREQLVRIIHLKCNYYFSLKLKNQYLIISWLCLDYLGEEQAGLRGLHLCHSSAPAGKDLKVEDDFSLKVIPILPALHCALLEAKKSFTEKDICLNKLVKHNFQELYKVDKSPALTAASQDGIKETAFFGKVSSDFDLVPPAEKCPLEAWSQLKSYFSDPSGYILEVSTALDLLAERPQSPCISDGICDAGFSLAMTPDPEFHDSETEVKKETETEKNSEEVFKARQGAVVPLSPASNLRVQPKRKASTLPTVQSKRVSLCRPFPKRTPAGASKGPGSPTTLQLVKGQFPQKRKRGAEVLAAQFVQTAKSDRKNQDAPISEDVPVAANAKRARRREKSPVTAAPRAEPPVRRSPQKQRASLVQGEEHPRISGQPPAEETASQLQSEISEGQKDVISINTAQPETLSVAQKEPPEDCIVTCDSRALNMLADLALSAATSTAPSSEPRNFPCSSELPLRAALLSQEPALRSTSDHEYHRGVKSQKGGPFSTPSSDKSDAAADPRLGPEEESAVAGSQAPAEAPAALPEEALEGSDSSQSSFVAVEHSYALLLAEHSRRHLQQRGALGPAFAKSGTKGPEAGTPVGKVMPFRHQHSTSPLQKLPQDPALRRRARLLPSGLKDFPCSHTVFSCDGSFKVTFRCEADYVFSLDSKYTNNPLEKTVLRALHGPWNTDLPDNVEEVKLLLHMWVALFYSSQNQVMRSSRKVVEHSNPAKYVSINSTLDPIAFSELQEASGAEGCLDPLSETVDAPRGLPAPPSFPDTDSLLPFAKPPPRRGLELWVQSEQRDLFAAEGHAEAPEGQNLIYSCDTEITGEKAEPESSDKLEKSNLVLSRIGSTQTNGPSIPGEDKSFEPLDGARVAYSDALTQTTLPRTYDGISSPSMICQKSVYSALESRVDLFHAKRQTKTGALQGLIQHSHPLNKECQPSLERKDDVGYVMINLEPVSLTFEKNTYVPIETEAVNRADTPAALSKQVSPAPDLSHAVPTFAEAQGLGDIPSPAVTGQKGATYLHASPASRETLVKEMRSLQKDRPVAGSPSPPDRPVVTEALSSLRSSHSSPREEMKLSRDFVLQTQSPFSISSEAVVELAQAAETGPSSASAPRDTGDSLSRVPSRRAPGGSAELKSSRTGLKSEKVSCGSFNSEFSKQSGLSLNREASLEFSEEGSDLDLTLTISPPASPRDEEPEAETEQRLEALGPHLELREKAFSPQGGPRVADRDVNPAGTVSVRAPANEDRSSDTSQTATFVLSKETCALEVAEEMHVALDFPFGSLIEEVSPASSPDPQAPGTDAQTARAVSSCGAELSEARRESGDPPSQMESVDMAVTEKDNSLAGPAPPVGQDNLPRAPPVPFPAETPLVFRRPPERRGTCSALPGAVPEQAVPGERDQGPPLSARAPSWDAEPKQPASAARYRDAPGNQATSGSPLQPAAVEDRSPHVSHLIWDSRDPPLSPRHILETQPLAAAFVSAAAPADASLSLGEQAGPERPPEHLLGGDLKTDGRCYILVRSLRSGSVDSAAGPGGLVHAERPAAGLCSGPGAAGPGPQTQEISAVRMARLLQNNGPEAGTLGDSVDLGGAGPQWRPPSPPAFHRLRAGSAGPSRDLVGHGPLPPCSRADAPPDTAAAGLGGGQAPSASFVPGSRAPLGGGVSGAESAGEGPRAPRDPAPPGLRANPDIHYEPLSGDSDQDSLGECAKPREDARDSCAPRCRRAEDKGASDESDDPFLGLSHSDDDEDWGRSRRLPGLEPARRVPAFVRVRDLRGVARAYANFPVTRARSRAPGGVAQGASLRLRTDTGPGAADLTRSTLDLEYLRFAHKLKQMVKRGDARRSGPSAPAFPKAAPAPAPASRSRSPLVVTVVHSDPRPPGRRARGHTPHRMAQASSSWKERGAHGRSPLPNSGGSQAAALHLHKLKYNSPWKDSRGDISLILSEFAEFNKVLLGSGSQAAPRDPEPSEAAAPAPGPPCPRPASYEDLVADLCASLRVKLERVVKEACARTFLFHLVETADESFFLRTKNLLRKGGHAEMEPQRFCQAFPRENDTLLVIIRNEDIASHLHQIPALLRLKRLPGVLFAGVDSPEDVLHHTYQELFRAGGFVVSDGRILDSVSLVQLKEIVRILEKLNASGRWKWLLHYREIKKLKEDVRVDSTACKKNLILKSYQSANILELLHYHECDSRPSTKAEHLQCLLTLQIQRVHARFAVFLTEKPALSREVFEDSGILVTDVNDFIENMQKVAAPFRSSYW", "length": 2580, "header": "tr|I3LNF1-1|A0A287AP22_PIG Computationally mapped isoform of Transcription activation suppressor family member 2 OS=Sus scrofa OX=9823 GN=TASOR2 PE=3 SV=3 CANONICAL=A0A287AP22-1" }, "locus": { "chromosome": "10", "start_pos": 65252447, "end_pos": 65198617, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024774.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024774.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025625.3", "url": "https://www.ensembl.org/id/ENSSSCP00000025625.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 917, "start_aa": "Thr", "end_pos": 917, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr917", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R339", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R339" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP22", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP22", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP22", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22" } ], "pmid": "" }, { "name": "HUSH2 complex", "id": "GO:0140286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140286", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP22", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP22", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of gene expression, epigenetic", "id": "GO:0045814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045814", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP22", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22" } ], "pmid": "" }, { "name": "negative regulation of type I interferon production", "id": "GO:0032480", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032480", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP22", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1145, "end_pos": 1147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2463, "end_pos": 2465, "annotation": "n_glycosylation_sequon" }, { "start_pos": 246, "end_pos": 248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2546, "end_pos": 2548, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AP22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22" }, { "id": "PF12480", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12480" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Golgi associated RAB2 interactor protein-like Rab2B-binding", "eco_id": "ECO_0000259", "start_pos": 413, "end_pos": 485, "start_aa": "Glu", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AP22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22" }, { "id": "PF24630", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24630" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TASOR PIN", "eco_id": "ECO_0000259", "start_pos": 2518, "end_pos": 2657, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AP22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AP22" }, { "id": "PF23314", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23314" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TASOR alpha/beta", "eco_id": "ECO_0000259", 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transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F959", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F959#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A287AP59", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59#function" }, { "database": "UniProtKB", "id": "A0A8W4FMM6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMM6#function" }, { "database": "UniProtKB", "id": "A0A8W4FD15", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD15#function" }, { "database": "UniProtKB", "id": "A0A8W4FDE4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDE4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AP59", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59", "locus": {} } ], "crossref": [ { "id": "A0A287AP59", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AP59", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036417", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036417", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050826", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050826", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF371", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF371", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232:SF157", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232:SF157", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24377", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24377", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384:SF218", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384:SF218", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24388", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24388", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24388:SF51", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24388:SF51", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24388:SF96", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24388:SF96", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47772", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47772", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47772:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47772:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AP59", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AP59-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8X0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8X0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8X0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8X0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F959", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F959", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F959-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F959-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCH6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCH6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD15", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD15-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD15-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDE4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDE4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFU6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMM6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMM6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FN68", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FN68-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPFPFQGLLTVKDVAIDFSPEEWECLDLGQRDLYRDVMIEIYRHLVSLGEDPFLPEFLFSPLGVGSCICRMSPAVFLTIQEIFRPHHFRSSEGKGACEGQEGCYDAHAPTGTFIHKENVTAKRDQGCKSNCEKLHFKSIPLDNPIDCTTNDDAKHECMLGRNIHSNIYEHQRFQNGGKPPQSDQIRRSNSKGSSLFNQQIFPHCSDIPNVATNGGVLIQPSLINGCDNIVDIDQHAMCIKVSKAFSKSCVFIRNKHGKFISQSSYLTTYQRICIREKACHFCECGKVFSQASRVTQYQHHPTRKEGCKCEECEKVCNQSLNLRRDTKKQTGGKPDKCEESTWCSAFTRHHVIHTAEKPHKSTECGKAFRRCSCLSEHQRIHIAEKPYKCTECGKAFRRRSHLFEHQRIHTAEKTYKCTECGKSFHCHSHLTQHLGSHSGEKPHKCTECGKAFHRHSHLTEHLRCHTGEKPHKCTECGKAFNRHSHLTQHLNSHAGAKPYRCSECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFHRHSHLTQHLNSHAGVKPYRCAECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFNQHSHLTQHLSSHTGKKPHKCTECGKAFHSPSSLTRHQRSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFKRNSHLTQHLSSHTGEKPHKCTECGKAFNWHSSLTQHLSSHTGEKPYECKECGKAFHSPSSLTRHLSSHTGEKLHKCTECGKSFHWHSSLIRHLSSHTGEKPYKCTECGKAFNRHSHLTEHLNSHAEVKSYRCTECGKAFNRHSHLTQHLSSHTGEKPHKCTECGKAFHWHSQLTQHLRSHTGEKPHKCMECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNQHSHLTEHLNSHAGANPHKCIECGKAFNQHSSLTRHLRSHTGVKPYKCTECGKAFNRHSHLTEHLRAHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFNWHSHLTRHQRSHSGEKS", "length": 1114, "header": "tr|A0A287AP59-1|A0A287AP59_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287AP59-1" }, "isoforms": [ { "isoform_ac": "A0A287AP59-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59/entry#A0A287AP59-1", "sequence": { "sequence": "MPFPFQGLLTVKDVAIDFSPEEWECLDLGQRDLYRDVMIEIYRHLVSLGEDPFLPEFLFSPLGVGSCICRMSPAVFLTIQEIFRPHHFRSSEGKGACEGQEGCYDAHAPTGTFIHKENVTAKRDQGCKSNCEKLHFKSIPLDNPIDCTTNDDAKHECMLGRNIHSNIYEHQRFQNGGKPPQSDQIRRSNSKGSSLFNQQIFPHCSDIPNVATNGGVLIQPSLINGCDNIVDIDQHAMCIKVSKAFSKSCVFIRNKHGKFISQSSYLTTYQRICIREKACHFCECGKVFSQASRVTQYQHHPTRKEGCKCEECEKVCNQSLNLRRDTKKQTGGKPDKCEESTWCSAFTRHHVIHTAEKPHKSTECGKAFRRCSCLSEHQRIHIAEKPYKCTECGKAFRRRSHLFEHQRIHTAEKTYKCTECGKSFHCHSHLTQHLGSHSGEKPHKCTECGKAFHRHSHLTEHLRCHTGEKPHKCTECGKAFNRHSHLTQHLNSHAGAKPYRCSECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFHRHSHLTQHLNSHAGVKPYRCAECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFNQHSHLTQHLSSHTGKKPHKCTECGKAFHSPSSLTRHQRSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFKRNSHLTQHLSSHTGEKPHKCTECGKAFNWHSSLTQHLSSHTGEKPYECKECGKAFHSPSSLTRHLSSHTGEKLHKCTECGKSFHWHSSLIRHLSSHTGEKPYKCTECGKAFNRHSHLTEHLNSHAEVKSYRCTECGKAFNRHSHLTQHLSSHTGEKPHKCTECGKAFHWHSQLTQHLRSHTGEKPHKCMECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNQHSHLTEHLNSHAGANPHKCIECGKAFNQHSSLTRHLRSHTGVKPYKCTECGKAFNRHSHLTEHLRAHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFNWHSHLTRHQRSHSGEKS", "length": 1114, "header": "tr|A0A287AP59-1|A0A287AP59_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287AP59-1" }, "locus": { "chromosome": "8", "start_pos": 42516675, "end_pos": 42493088, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057373.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057373.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045683.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045683.2" } ] } }, { "isoform_ac": "A0A8W4F8X0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59/entry#A0A8W4F8X0-1", "sequence": { "sequence": "MEGLLTVKDVAIDFSPEEWECLDLGQRDLYRDVMIEIYRHLVSLVHFHLSSWFQNGGKPPQSDQIRRSNSKGSSLFNQQIFPHCSDIPNVATNGGVLIQPSLINGCDNIVDIDQHAMCIKVSKAFSKSCVFSNYKIRNKHGKFISQNTKKQTGGKPDKCEESTWCSAFTRHHVIHTAEKPHKSTECGKAFRRCSCLSEHQRIHIAEKPYKCTECGKAFRRRSHLFEHQRIHTAEKTYKCTECGKSFHCHSHLTQHLGSHSGEKPHKCTECGKAFHRHSHLTEHLRCHTGEKPHKCTECGKAFNRHSHLTQHLNSHAGAKPYRCSECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFHRHSHLTQHLNSHAGVKPYRCAECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFNQHSHLTQHLSSHTGKKPHKCTECGKAFHSPSSLTRHQRSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFKRNSHLTQHLSSHTGEKPHKCTECGKAFNWHSSLTQHLSSHTGEKPYECKECGKAFHSPSSLTRSHTGEKPHKCMECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNQHSHLTEHLNSHAGANPHKCIECGKAFNQHSSLTRHLRSHTGVKPYKCTECGKAFNRHSHLTEHLRAHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFNWHSHLTRHQRSHSGEKS", "length": 821, "header": "tr|A0A8W4F8X0-1|A0A287AP59_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A287AP59-1" }, "locus": { "chromosome": "8", "start_pos": 42516675, "end_pos": 42492889, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100567.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100567.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075723.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075723.1" } ] } }, { "isoform_ac": "A0A8W4F959-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59/entry#A0A8W4F959-1", "sequence": { "sequence": "MDVAIDFSPEEWECLDLGQRDLYRDVMIEIYRHLVSLGEDPFLPEFLFSPLGVGSCICRMSPARFQNGGKPPQSDQIRRSNSKGSSLFNQQIFPHCSDIPNVATNGGVLIQPSLINGCDNIVDIDQHAMCIKVSKAFSKSCVFSNYKSIHTGTRSDACIESQTNFDPDSNLMKLQGTQFSEKQSVRNKHGKFISQSSYLTTYQRICIREKACHFCECGKVFSQASRVTQYQHHPTRKEGCKCEECEKVCNQSLNLHHVIHTAEKPHKSTECGKAFRRCSCLSEHQRIHIAEKPYKCTECGKAFRRRSHLFEHQRIHTAEKTYKCTECGKSFHCHSHLTQHLGSHSGEKPHKCTECGKAFHRHSHLTEHLRCHTGEKPHKCTECGKAFNRHSHLTQHLNSHAGAKPYRCSECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFHRHSHLTQHLNSHAGVKPYRCAECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFNQHSHLTQHLSSHTGKKPHKCTECGKAFHSPSSLTRHQRSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFKRNSHLTQHLSSHTGEKPHKCTECGKAFNWHSSLTQHLSSHTGEKPYECKECGKAFHSPSSLTRHLSSHTGEKLHKCTECGKSFHWHSSLIRHLSSHTGEKPYKCTECGKAFNRHSHLTEHLNSHAEVKSYRCTECGKAFNRHSHLTQHLSSHTGEKPHKCTECGKAFHWHSQLTQHLRSHTGEKPHKCMECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNQHSHLTEHLNSHAGANPHKCIECGKAFNQHSSLTRHLRSHTGVKPYKCTECGKAFNRHSHLTEHLRAHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFNWHSHLTRHQRSHSGEKS", "length": 1021, "header": "tr|A0A8W4F959-1|A0A287AP59_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A287AP59-1" }, "locus": { "chromosome": "8", "start_pos": 42516675, "end_pos": 42493081, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103259.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103259.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074820.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074820.1" } ] } }, { "isoform_ac": "A0A8W4FCH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59/entry#A0A8W4FCH6-1", "sequence": { "sequence": "MPFPFQGLLTVKDVAIDFSPEEWECLDLGQRDLYRDVMIEIYRHLVSLEYVISKPDLVRLLEQKKDPWDVKGMETVAIQPGMCVFFHALFLHLVRSE", "length": 97, "header": "tr|A0A8W4FCH6-1|A0A287AP59_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A287AP59-1" }, "locus": { "chromosome": "8", "start_pos": 42494464, "end_pos": 42493088, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105869.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105869.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077103.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077103.1" } ] } }, { "isoform_ac": "A0A8W4FD15-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59/entry#A0A8W4FD15-1", "sequence": { "sequence": 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PE=3 SV=1 CANONICAL=A0A287AP59-1" }, "locus": { "chromosome": "8", "start_pos": 42516675, "end_pos": 42492889, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099152.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099152.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077212.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077212.1" } ] } }, { "isoform_ac": "A0A8W4FDE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59/entry#A0A8W4FDE4-1", "sequence": { "sequence": "LEMNFSLWESNPYSQSHNDLSFGPWYMPFPFQGLLTVKDVAIDFSPEEWECLDLGQRDLYRDVMIEIYRHLSSLSVCMLYSIDNTDYCASRVTQYQHHPTRKEGCKCEECEKVCNQSLNLRRDTKKQTGGKPDKCEESTWCSAFTRHHVIHTAEKPHKSTECGKAFRRCSCLSEHQRIHIAEKPYKCTECGKAFRRRSHLFEHQRIHTAEKTYKCTECGKSFHCHSHLTQHLGSHSGEKPHKCTECGKAFHRHSHLTEHLRCHTGEKPHKCTECGKAFNRHSHLTQHLNSHAGAKPYRCSECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFHRHSHLTQHLNSHAGVKPYRCAECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFNQHSHLTQHLSSHTGKKPHKCTECGKAFHSPSSLTRHQRSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFKRNSHLTQHLSSHTGEKPHKCTECGKAFNWHSSLTQHLSSHTGEKPYECKECGKAFHSPSSLTRHLSSHTGEKLHKSTVETLKTSVWTRGLRGGMFGLVSFSSVYLYGHYLGLLDKKKKMLVIQFSNY", "length": 686, "header": "tr|A0A8W4FDE4-1|A0A287AP59_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A287AP59-1" }, "locus": { "chromosome": "8", "start_pos": 42517728, "end_pos": 42492338, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106176.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106176.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077285.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077285.1" } ] } }, { "isoform_ac": "A0A8W4FFU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59/entry#A0A8W4FFU6-1", "sequence": { "sequence": "MPFPFQGLLTVKDVAIDFSPEEWECLDLGQRDLYRDVMIEIYRHLVSLGEDPFLPEFLFSPLEYVISKPDLVRLLEQKKDPWDVKGMETVAIQPGMCAWVKQMTQDPYNRLWEDVKGSSLFNQQIFPHCSDIPNVATNGGVLIQPSLINGCDNIVDIDQHAMCIKVSKAFSKSCVFSNYKSIHTGTRSDACIESQTNFDPDSNLMKLQGTQFSEKQSKVCNQSLNLHHVIHTAEKPHKSTECGKAFRRCSCLSEHQRIHIAEKPYKCTECGKAFRRRSHLFEHQRIHTAEKTYKCTECGKSFHCHSHLTQHLGSHSGEKPHKCTECGKAFHRHSHLTEHLRCHTGEKPHKCTECGKAFNRHSHLTQHLNSHAGAKPYRCSECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFHRHSHLTQHLNSHAGVKPYRCAECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFNQHSHLTQHLSSHTGKKPHKCTECGKAFHSPSSLTRHQRSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFKRNSHLTQHLSSHTGEKPHKCTECGKAFNWHSSLTQHLSSHTGEKPYECKECGKAFHSPSSLTRHLSSHTGEKLHKCTECGKSFHWHSSLIRHLSSHTGEKPYKCTECGKAFNRHSHLTEHLNSHAEVKSYRCTECGKAFNRHSHLTQHLSSHTGEKPHKCTECGKAFHWHSQLTQHLRSHTGEKPHKCMECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNQHSHLTEHLNSHAGANPHKCIECGKAFNQHSSLTRHLRSHTGVKPYKCTECGKAFNRHSHLTEHLRAHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFNWHSHLTRHQRSHSGEKS", "length": 992, "header": "tr|A0A8W4FFU6-1|A0A287AP59_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A287AP59-1" }, "locus": { "chromosome": "8", "start_pos": 42516675, "end_pos": 42493088, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097711.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097711.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078115.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078115.1" } ] } }, { "isoform_ac": "A0A8W4FMM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59/entry#A0A8W4FMM6-1", "sequence": { "sequence": "FTVSPVYLPSHSKGLLTVKDVAIDFSPEEWECLDLGQRDLYRDVMIEIYRHLVSLVFSQASRVTQYQHHPTRKEGCKCEECEKVCNQSLNLRRDTKKQTGGKPDKCEESTWCSAFTRHHVIHTAEKPHKSTECGKAFRRCSCLSEHQRIHIAEKPYKCTECGKAFRRRSHLFEHQRIHTAEKTYKCTECGKSFHCHSHLTQHLGSHSGEKPHKCTECGKAFHRHSHLTEHLRCHTGEKPHKCTECGKAFNRHSHLTQHLNSHAGAKPYRCSECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFHRHSHLTQHLNSHAGVKPYRCAECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFNQHSHLTQHLSSHTGKKPHKCTECGKAFHSPSSLTRHQRSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFKRNSHLTQHLSSHTGEKPHKCTECGKAFNWHSSLTQHLSSHTGEKPYECKECGKAFHSPSSLTRHLSSHTGEKLHKCTECGKSFHWHSSLIRHLSSHTGEKPYKCTECGKAFNRIRESILGQNHTIVINVTKPLPFLSFLFFIFLGPHL", "length": 678, "header": "tr|A0A8W4FMM6-1|A0A287AP59_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A287AP59-1" }, "locus": { "chromosome": "8", "start_pos": 42516920, "end_pos": 42492726, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093487.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093487.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080603.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080603.1" } ] } }, { "isoform_ac": "A0A8W4FN68-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59/entry#A0A8W4FN68-1", "sequence": { "sequence": "MEGLLTVKDVAIDFSPEEWECLDLGQRDLYRDVMIEIYRHLVSLEYVISKPDLVRLLEQKKDPWDVKGMETVAIQPGMCGSSLFNQQIFPHCSDIPNVATNGGVLIQPSLINGCDNIVDIDQHAMCIKVSKAFSKSCVFSNYKSIHTGTRSDACIESQTNFDPDSNLMKLQGTQFSEKQSVRNKHGKFISQSSYLTTYQRICIREKACHFCECGKVFKSTWCSAFTRHHVIHTAEKPHKSTECGKAFRRCSCLSEHQRIHIAEKPYKCTECGKAFRRRSHLFEHQRIHTAEKTYKCTECGKSFHCHSHLTQHLGSHSGEKPHKCTECGKAFHRHSHLTEHLRCHTGEKPHKCTECGKAFNRHSHLTQHLNSHAGAKPYRCSECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFHRHSHLTQHLNSHAGVKPYRCAECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFNQHSHLTQHLSSHTGKKPHKCTECGKAFHSPSSLTRHQRSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFKRNSHLTQHLSSHTGEKPHKCTECGKAFNWHSSLTQHLSSHTGEKPYECKECGKAFHSPSSLTRHLSSHTGEKLHKCTECGKSFHWHSSLIRHLSSHTGEKPYKCTECGKAFNRHSHLTEHLNSHAEVKSYRCTECGKAFNRHSHLTQHLSSHTGEKPHKCTECGKAFHWHSQLTQHLRSHTGEKPHKCMECGKAFHWPSSLTRHLSSHTGEKPHKCTECGKAFNQHSHLTEHLNSHAGANPHKCIECGKAFNQHSSLTRHLRSHTGVKPYKCTECGKAFNRHSHLTEHLRAHTGEKPHKCTECGKAFNRHSHLTEHLNSHAGVKPYRCTECGKAFNWHSHLTRHQRSHSGEKS", "length": 993, "header": "tr|A0A8W4FN68-1|A0A287AP59_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A287AP59-1" }, "locus": { "chromosome": "8", "start_pos": 42516675, "end_pos": 42492889, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092058.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092058.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080646.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080646.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F8X0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8X0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP59", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP59", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP59", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP59", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP59", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP59", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP59", "url": "https://www.uniprot.org/uniprotkb/A0A287AP59" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 118, "end_pos": 120, "annotation": "n_glycosylation_sequon" }, { "start_pos": 317, "end_pos": 319, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AP59-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1114, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", 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"url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014406", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524733", "url": "https://www.ncbi.nlm.nih.gov/gene/100524733", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CRNVVPE", "url": "https://omabrowser.org/oma/group/CRNVVPE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287APD3", "url": "https://www.orthodb.org/?gene=A0A287APD3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005661837", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661837", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287APD3", "url": "https://www.uniprot.org/uniprotkb/A0A287APD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APD3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVTVDVHEVFKYPFEQVVASFLRKYPNPMDKNVISVKIVEEKRDVSTGIIYRKRIAVCQNVVPEMLRKVNILKVPNIQLEEESWFDPQERNMAIRSHCLTWTQYASMKEESVFRESVENPNWTEFIQKGKISITGVGFLNCVLETFASTFLRQGAQKGIRIMEMLLKEQCGAPVVE", "length": 177, "header": "tr|A0A287APD3-1|A0A287APD3_PIG Isoform 1 of PRELI domain containing 2 OS=Sus scrofa OX=9823 GN=PRELID2 PE=4 SV=1 CANONICAL=A0A287APD3-1" }, "isoforms": [ { "isoform_ac": "A0A287APD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APD3/entry#A0A287APD3-1", "sequence": { "sequence": "MGVTVDVHEVFKYPFEQVVASFLRKYPNPMDKNVISVKIVEEKRDVSTGIIYRKRIAVCQNVVPEMLRKVNILKVPNIQLEEESWFDPQERNMAIRSHCLTWTQYASMKEESVFRESVENPNWTEFIQKGKISITGVGFLNCVLETFASTFLRQGAQKGIRIMEMLLKEQCGAPVVE", "length": 177, "header": "tr|A0A287APD3-1|A0A287APD3_PIG Isoform 1 of PRELI domain containing 2 OS=Sus scrofa OX=9823 GN=PRELID2 PE=4 SV=1 CANONICAL=A0A287APD3-1" }, "locus": { "chromosome": "2", "start_pos": 147191513, "end_pos": 147117127, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037134.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037134.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045754.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045754.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287APD3", "url": "https://www.uniprot.org/uniprotkb/A0A287APD3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A2K3-1", "protein_name": "PRELI domain containing 2", "gene_name": "Prelid2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGVTVDVHQVFQYPFEQVVACFLRKYPNPMDKNVISVKTVEEKKDESTGLIYRKRIAICQNVVPEVLRKVSILKVPDIQLEEESWLSLQKRNMAIRSHCLTWTQYASMREESVFRESVENPNWTEFIQTGRISITGAGFLNCILETFASTFLRQGAQKGIRIMEMLLKEQCGSPLVE", "length": 177 }, "evidence": [ { "id": "A0A287APD3", "url": "https://omabrowser.org/oma/group/A0A287APD3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BMB4-1", "protein_name": "PRELI domain containing 2", "gene_name": "PRELID2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGVTVDVHEVFKYPFEQVVASFLRKYPNPMDKNVISVKIVEERKDVSTGIIYRKRIAVCQNVVPEILRKVNILKVPNIQLEEESWFNPQERNMAIRSHCLTWTQYASMKEESVFRESTENPNWTEFIQKGRISITGAGFLNCVLESFARSFLRQGVQKGIRIMEMLLKEQCGAPLAE", "length": 177 }, "evidence": [ { "id": "A0A287APD3", "url": "https://omabrowser.org/oma/group/A0A287APD3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q0VBB0-1", "protein_name": "PRELI domain-containing protein 2", "gene_name": 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} ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatidic acid transfer activity", "id": "GO:1990050", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990050", "evidence": [ { "database": "UniProtKB", "id": "A0A287APD3", "url": "https://www.uniprot.org/uniprotkb/A0A287APD3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial intermembrane space", "id": "GO:0005758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005758", "evidence": [ { "database": "UniProtKB", "id": "A0A287APD3", "url": "https://www.uniprot.org/uniprotkb/A0A287APD3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "phospholipid transport", "id": "GO:0015914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015914", "evidence": [ { "database": "UniProtKB", "id": "A0A287APD3", "url": "https://www.uniprot.org/uniprotkb/A0A287APD3" } ], "pmid": "" } ] } ] }, 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287APE5-1", "uniprot_ac": "A0A287APE5", "uniprot_id": "A0A287APE5_PIG", "mass": { "chemical_mass": 74375.0, "monoisotopic_mass": 74375.0 }, "refseq": {}, "gene_names": [ { "name": "WDCP", "type": "recommended", "evidence": [ { "id": "A0A287APE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APE5" } ] } ], "protein_names": [ { "name": "WD repeat and coiled-coil-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287APE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APE5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287APE5", "url": "https://www.uniprot.org/uniprotkb/A0A287APE5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDCP", "url": "https://www.uniprot.org/uniprotkb/A0A287APE5", "locus": { "chromosome": "3", "start_pos": 114652991, "end_pos": 114636283, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008589", "url": "https://www.ensembl.org/id/ENSSSCG00000008589" } ] } } ], "crossref": [ { "id": "A0A287APE5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287APE5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008589", "url": 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"categories": [ "Protein" ] }, { "id": "A0A287APE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APE5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELGKGKLLRTGLNALYQAVHPIHGLAWTDGNQIVLTDLYLHRGEAMFGDSTVIGQLDHVCGVSWAPPRTADTLALLAVQHNKHVTVWQLCPRTSETSKWFMSQTCEIKQSFPVLPQGCVWHPKSAVLTVLTAQDVSVFHNVHRDSSQVKVDINPQGLIHCACWTQDGQRLVVVAGSSLHSYIWDSVQKTLHRCAFCPVFDVDSCVRAVCATVDSQVAIATELPLAKICGLNSSGTFDIPPSAEDTCLYTLPVGDEGSSETRVSPFSSSSSDPLDLTHIHFNRFKSEDSSLIYLRKKDCLTGTGLDSSHLVLLTFEKEVTQNGKVTIPGILVPDLIAFNLKAQVLAVASNSCNVIFIYSLIPSLMPHIQQIQLENNDRPKGICFLTDKLLLILIGKQKSTDSAFPPSTKSDQYIIRLIIRDITLEKESPVTPSENQSGYSAFNTPLNKANREKLLESLSSAFYQQNRELLLTTNIGNQSGRPGRTLIKEIKSPPSRICDGATALERVGAGPVTQSGALPRPSSTPDPTSTMEPPTLQGEKESYQLSKELEVLSRTLIEVHRRLSELTDFLRNGKKSPSVYPLSEDLPYVHITCQKPYFVGPVVEKRAVLLCNGKLRLSTVQQTFGLSLIEMLHGSHWILLCDDSEGFIPLTFTATQEITIRDGRSDVFRDCVSES", "length": 675, "header": "tr|A0A287APE5-1|A0A287APE5_PIG Isoform 1 of WD repeat and coiled-coil-containing protein OS=Sus scrofa OX=9823 GN=WDCP PE=4 SV=2 CANONICAL=A0A287APE5-1" }, "isoforms": [ { "isoform_ac": "A0A287APE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APE5/entry#A0A287APE5-1", "sequence": { "sequence": "MELGKGKLLRTGLNALYQAVHPIHGLAWTDGNQIVLTDLYLHRGEAMFGDSTVIGQLDHVCGVSWAPPRTADTLALLAVQHNKHVTVWQLCPRTSETSKWFMSQTCEIKQSFPVLPQGCVWHPKSAVLTVLTAQDVSVFHNVHRDSSQVKVDINPQGLIHCACWTQDGQRLVVVAGSSLHSYIWDSVQKTLHRCAFCPVFDVDSCVRAVCATVDSQVAIATELPLAKICGLNSSGTFDIPPSAEDTCLYTLPVGDEGSSETRVSPFSSSSSDPLDLTHIHFNRFKSEDSSLIYLRKKDCLTGTGLDSSHLVLLTFEKEVTQNGKVTIPGILVPDLIAFNLKAQVLAVASNSCNVIFIYSLIPSLMPHIQQIQLENNDRPKGICFLTDKLLLILIGKQKSTDSAFPPSTKSDQYIIRLIIRDITLEKESPVTPSENQSGYSAFNTPLNKANREKLLESLSSAFYQQNRELLLTTNIGNQSGRPGRTLIKEIKSPPSRICDGATALERVGAGPVTQSGALPRPSSTPDPTSTMEPPTLQGEKESYQLSKELEVLSRTLIEVHRRLSELTDFLRNGKKSPSVYPLSEDLPYVHITCQKPYFVGPVVEKRAVLLCNGKLRLSTVQQTFGLSLIEMLHGSHWILLCDDSEGFIPLTFTATQEITIRDGRSDVFRDCVSES", "length": 675, "header": "tr|A0A287APE5-1|A0A287APE5_PIG Isoform 1 of WD repeat and coiled-coil-containing protein OS=Sus scrofa OX=9823 GN=WDCP PE=4 SV=2 CANONICAL=A0A287APE5-1" }, "locus": { "chromosome": "3", "start_pos": 114651156, "end_pos": 114641809, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042408.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042408.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045894.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045894.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 431, "start_aa": "Thr", "end_pos": 431, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr431", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287APE5", "url": "https://www.uniprot.org/uniprotkb/A0A287APE5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Y7H6-1", "protein_name": "WD repeat and coiled-coil-containing protein", "gene_name": "WDCP", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEHLLSKMYQRDMELGKAKLLRTGLNALHQAIHHVHGIAWTDGKQVILTSLHLHNGEPKFGDSSVVGQFEHVHGLYWGPGPPDAPALLAVQHKKHITVWQLCFNASDRNKLLVSQICDISEPFPVLPQGCVWHPKKEILAVLTTRDASVLHSVHLNNCRIKADIKGSGLIHCACWTKEGNRLVVGVGSALHSYIWDDTQKTLNACTFCPIFDVGGYICAVEATLNFQIAVATELPLDKICGLNAGVAFEVPASIETESFPSQSSLCGEEEYSMDGGKKVLDAEKPMSAVTSPVDLTHILSSKPGADSSPLLHLRPKDYLTGSGQDSSHLILVTFEKKVTSTKKVSIPGILVPDIMAFDIKTQTVSVASNTCNVILVYSLTSSNLPNIQQIQLEKNEKPKGLCFLTNKLLLILVGKQKFTDPAFLPSSRSDKYMIRLMIKELIFEVAPSTSASVNGSCASVNGSLNLSNIPHDVSTDVHPLSRGLLIPDRAALQSPTSRRKLIEEIKSPGYEQSCLLNMSDLKEKKVSLNFPPAVESLNAEPLNQSASLSTTSLAFSNKPTSPKRQIETASKIPNSYKNNLLSEKEASYFSKNVEKLSGNFTQLQHHVCELTELLKAGKRNLPMYPSSQEPSFINITCQKQLSRNDSDERRSVILCEGKLRLSVVQQIFNLSLVEMQHGSSWIVLTADSEGFVPLTFTSMQEVVVRDASMKGYSARSSKTLDIISSTEGCRHSASESLDITSSLEVLRDCSSKALDGSSPSEQPSSKM", "length": 767 }, "evidence": [ { "id": "A0A287APE5", "url": "https://omabrowser.org/oma/group/A0A287APE5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LIV8-1", "protein_name": "WD repeat and coiled-coil-containing protein", "gene_name": "Wdcp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGNGKLPRTGLNSLNQAVHPTQGLAWTDGNRVVLTDLQLHSGEAKFGDSQVIGSFESVCGVSWAPVSTVHVPSLLAVQHRKLVSVWQLCPSTIGSSKWQMCQTSEIRESLPILPQGCMWHPKDPVLTVLTARDVSIFPNVHQDGGPRVKVDINTRGRVYCACWTLDGQRLVVAVDSSLHSYIWDSSQKSLHSCSFCPVFPVHCCIRTITATGNSQVAVATELPLHKLCSLNASDAFGGPPNGEDGAVHPHPVGVSETPPVDEQEAAAEMNSGAAVSPLSVPLDLTHIHFNRSGAEQRSLICLRKKDYLTGTGQDSSHLILVTFKKAVTMTKKVAIPGILVPDIIAFTLTAQLVAVASNTCNVILIYSVAPSSMPNIQQIQLESNERPKGVCFLTDRLLLITVGKQKPTETAFLPSSESDQYTVYLTVREITLGRESSGTSAESQGAYADINALLNKADREEKFTESLSPCVSPLSQGLLLTANSSTQSGRSGKALIQEIKSPLSPLSSDSIVHEVCHRPSWLCTALPRPSRTPDHTSTPEVNSPATENLQKETCPLSRELGSLSRHLVGMQQYLFEIKDFLHKEKRVSPAYPPSHDPPYVHLIYQKPCSVGPAEKRAVLLCDGRLRLSTIQQMFGLHLVEMLHGIYMHAVPIEVSRGH", "length": 660 }, "evidence": [ { "id": "A0A287APE5", "url": "https://omabrowser.org/oma/group/A0A287APE5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BDF4-1", "protein_name": "WD repeat and coiled coil containing", "gene_name": "WDCP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MELGQGKLLRTGLNALYQAIHPIHGLAWTDGTQVVLTNLQLHSGEAKFGDSTVLGQFEHVYGVSWAPPGAADTPTLLAVQHKKCVIVWQLCPSPAETSKWLMSQPCEIRQSCPVLPQGCVWHPESAILTVLTAWDVSVFYNIHCDSSQVKVDISTEGLIYCACWTQDGQRLVVAAGSSLHSYIWDSAQKTLHRCSLCPIFDVDSYVRSIRATVDSQVAIATELPLDKICGLNASGTFDIPPSGEDTCLHALPVTDRVSSETNSETPVSSSYSEPLDLTHIHFNRFKSEGSSLTCLRKKDYLTGTGLDSSHLVLLTFEKEVTCNRKVIIPGILVPDLIAFNFKAQAVAVASNTSNVIFIYSVIPLLMPNIQQIQLESNERPKGICFLTDKLLLILVGRQKSMDSAFLPSSKSDQYMIRLIVREVMLKEDSPVTLSENQSGNSAFSTLINKTNIKKLIEDLSPDFCHQSTGLLFTANSSSQSGQPGRTLIKEIESPASSICDGSTFLETLDARPVNLSVTPPRPSGTPAHTSTAEPPNLEREKETYQLSKELEVVSRNLSEVQRHLSELSDFLHNGRKSSPVYPLSQDLPYVHITCQKSHFVHPVVEKRMMLLCNGKLRLSTVQQTFGLSLVEMLHDSHWILLCADSEGFVPLTFTATQEIIIRDGRSDDFRNSASEP", "length": 676 }, "evidence": [ { "id": "A0A287APE5", "url": "https://omabrowser.org/oma/group/A0A287APE5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3GZP3-1", "protein_name": "WD repeat and coiled-coil-containing protein", "gene_name": "Wdcp", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MELGNGKLLRTGLNSLNQAVHPTHGLAWTDGRRVVLTDLQLRKGEAKFGDSQVIGKFEYVCGVSWAPLSTAHIPTLLAIQHKKHVAVWQLCPSISGSSKWLLSQTSEIRESLPILPQGCVWHPKDAILTVLTAQDASIFPNVHRDGSRVKVDINTKGRIYCACWSLDGQRLVLAIDSSLHSYMWDSSHKSLLSCSFCPVFQVNRSIRSITATVDSHVAITTELPLHKLCSLNASEAFDDPTNGNHAGVGTLPGGETPPGELNSGVTVSPSSDPLDLTHIHFNQCQAREGSLICVSKKDYLTGTGQDSSHLVLVTFKKAITMTKKVAIPGILVPDLIAFNLKAQLVAVASNTCNIILIYSVLPSSMPNIQQIQLESNERPKGICFLTDKLLLISVGKPKPTETAFLPSSESDQYSVRLVFREITLARETSGMPTESQGAYSAFNVLLNRANREKFLESLSPGWSPLSQGFLLTDDASTLSGRSRRALIQEIRSPLSPPSSASIVQETPHGPSWLQPALPTPSGTPDHTSTPEPNLLQRENSQQEKETCPLSRELDILSRHLVGIHECLLELRDFLFKEKRCSPMYPLSQDPSFVHLIYQKPPSVGPEEKRAVLLCDGKLRLSTVQQMFGLYLVEMLLASHWILLSADSQGFIPLTFTASQTVVVRDGSLSKPEVARDSVSHHPDPIPPPGVIEDLATQSVDTAGGFNIMT", "length": 709 }, "evidence": [ { "id": "A0A287APE5", "url": "https://omabrowser.org/oma/group/A0A287APE5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6NV72-1", "protein_name": "WD repeat and coiled-coil-containing protein", "gene_name": "Wdcp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MELGNGKLPRTGLNSLNQAVHPTWGLAWTDGNRVVLTDLQLHSGEAKFGDSRVIGRFESVCGVCWAPVRTVRSPALLAIQHRKLVSVWQLCPSTAGASKWQASQTSEVRESLPILPRGCVWHPKDAVLTVLTAQGVSIFPNVHQDGSRVKVDVNTKGRVYCACWTLDGQRLVVAIDSNLHSYIWDSSQKSLHSCSFCPVFPVNCSIRSIEATGNSQVAIATELPLHKLCSLNASEALDGPPNGDDGSVHTRPVDEQVATMDMNSGVTVSPFSVPLDLTHIHFNPSQAEQSSLICLRKKDYLTGTGQDSSHLILVTFKKAITITKKVAIPGILVPDLIAFNLTAELVAVASNTCNVILIYSAAPSSMPNIQQIQLESNERPKGICFLTDRLLLIAVGKQKPSEAAFLPSSEYGQYTVRLIVREMAQGSESSGTSAESQGAYSDFTALLSKADREKFTDSLSPGSSPLSQGLLLTPNSSTQSGRSGRALIQEIKSPLSPLSSDSVVHETLHRPPWLCPALPRPSRTPEHTSTPELNSPQRENLQKEKETCPLSRELEILSRHLVAMQQYLSELTGFLHKEKRVAPAYPPSQDAPYVHLIYQNPCSVGPTERRAVLLCDGKLRLSTVQQMFGLHLVEMLHEVLSSIPSNHMVTHNLHGPGGLFWSV", "length": 663 }, "evidence": [ { "id": "A0A287APE5", "url": "https://omabrowser.org/oma/group/A0A287APE5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H6R7-1", "protein_name": "WD repeat and coiled-coil-containing protein", "gene_name": "WDCP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MELGKGKLLRTGLNALHQAVHPIHGLAWTDGNQVVLTDLRLHSGEVKFGDSKVIGQFECVCGLSWAPPVADDTPVLLAVQHEKHVTVWQLCPSPMESSKWLTSQTCEIRGSLPILPQGCVWHPKCAILTVLTAQDVSIFPNVHSDDSQVKADINTQGRIHCACWTQDGLRLVVAVGSSLHSYIWDSAQKTLHRCSSCLVFDVDSHVCSITATVDSQVAIATELPLDKICGLNASETFNIPPNSKDMTPYALPVIGEVRSMDKEATDSETNSEVSVSSSYLEPLDLTHIHFNQHKSEGNSLICLRKKDYLTGTGQDSSHLVLVTFKKAVTMTRKVTIPGILVPDLIAFNLKAHVVAVASNTCNIILIYSVIPSSVPNIQQIRLENTERPKGICFLTDQLLLILVGKQKLTDTTFLPSSKSDQYAISLIVREIMLEEEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPDFCHQNKGLLLTVNTSSQNGRPGRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTSTLEPPRLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRLHNGKKSSSVYPLSQDLPYVHIIYQKPYYLGPVVEKRAVLLCDGKLRLSTVQQTFGLSLIEMLHDSHWILLSADSEGFIPLTFTATQEIIIRDGSLSRSDVFRDSFSHSPGAVSSLKVFTGLAAPSLDTTGCCNHVDGMA", "length": 721 }, "evidence": [ { "id": "A0A287APE5", "url": "https://omabrowser.org/oma/group/A0A287APE5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein complex oligomerization", "id": "GO:0051259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051259", "evidence": [ { "database": "UniProtKB", "id": "A0A287APE5", "url": "https://www.uniprot.org/uniprotkb/A0A287APE5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "kinase binding", "id": "GO:0019900", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019900", "evidence": [ { "database": "UniProtKB", "id": "A0A287APE5", "url": "https://www.uniprot.org/uniprotkb/A0A287APE5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 232, "end_pos": 234, "annotation": "n_glycosylation_sequon" }, { "start_pos": 435, "end_pos": 437, "annotation": "n_glycosylation_sequon" }, { "start_pos": 477, "end_pos": 479, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287APE5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 675, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287APE5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287APE5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 431 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 232, "end_pos": 234 }, { "start_pos": 435, "end_pos": 437 }, { "start_pos": 477, "end_pos": 479 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287APF6-1", "uniprot_ac": "A0A287APF6", "uniprot_id": "A0A287APF6_PIG", "mass": { "chemical_mass": 24231.0, "monoisotopic_mass": 24231.0 }, "refseq": { "ac": "XP_020924396", "name": "nicolin-1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924396" }, "gene_names": [ { "name": "NICN1", "type": "recommended", "evidence": [ { "id": "A0A287APF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APF6" } ] }, { "name": "NICN1", "type": "synonym", "evidence": [ { "id": "XP_020924396", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924396" } ] } ], "protein_names": [ { "name": "Nicolin 1, tubulin polyglutamylase complex subunit", "type": "synonym", "evidence": [ { "id": "A0A287APF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APF6/entry#names_and_taxonomy" } ] }, { "name": "nicolin-1", "type": "synonym", "evidence": [ { "id": "XP_020924396", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924396" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287APF6", "url": "https://www.uniprot.org/uniprotkb/A0A287APF6" 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"MSLPKTPSTSASEGKHLKISTSKEERGLPELREKKSLVDWSKPLPPSLQNQFIPEEVLLSLTCAANAGPCPENLLPPKKIKTPKVTLPRRADHVWHNPIRRNKFKYLIDHPVSLTGAGRDISFLYDVKYVKGETRESAVCPPQMDRSSQSHDGVIVPHKPKKLTDTLIPEEFHIVSNTGVSGLECYDDKYTTLLTDSENRLLLFPSMKPNKRIEVVQLNDVMDTMLERAGVDNQDYIGPTKMHKLLHILKKEQTIYNTVFHELIRQVSVDCADRGELLSKIRERYVQMLDQIARQMIDFYKDMVTQRMMDQRILEELYNFKNVIEELTRELCLVRAHDVKLTKEAEKAHRDLAQALLDAEENAKIVEEYHDLYTLQRGRMESDIKQLMMERDVWSSSTYDLSIKIIERNKIILAKRLYLNEKGWSKYAKHFIILLSTKDTADLALLQKLTQKWRNLVNKFKQEVEQNEESVKKTLQSIKDGLVKWQHFFRNDSGKNILSPNKENVSESVVLDFKQWLEVSLKFFQV", "length": 526, "header": "tr|A0A5G2R3C6-1|A0A287APG7_PIG Computationally mapped isoform of Axonemal dynein light chain domain containing 1 OS=Sus scrofa OX=9823 GN=AXDND1 PE=4 SV=1 CANONICAL=A0A287APG7-1" }, "locus": { "chromosome": "9", "start_pos": 121168278, "end_pos": 121120790, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068997.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068997.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068697.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068697.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 240, "start_aa": "Thr", "end_pos": 240, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr240", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson 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"https://bgee.org/?page=gene&gene_id=ENSSSCG00000001532", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026728", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026728", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22774", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22774", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22774:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22774:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24917", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24917", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287APH8", "url": "https://www.uniprot.org/uniprotkb/A0A287APH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZ15", "url": "https://www.uniprot.org/uniprotkb/F1RZ15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZ15-1", "url": "https://www.uniprot.org/uniprotkb/F1RZ15-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGLIKKQILKHLSRFTKNLSPDKINLSTLKGEGQLTNLELDEEVLQNVLELPTWLAITRVYCNRASIRIQWTKLKTHPICLEYGFAEKVVEGMFIIVNSITIKIHSKAFHASFELWQLQGYSVNPNWQQSDLRLTRITDPRRGEVLTFKEITWQTLRIEADATDNGDQDPVTTPLRLITNQGRIQIALKRRTKDCNVIASKLMFLLDDLLWVLTDSQLKAMMKYAESLSEAMEKSAQQRKSLAPEPAQITPPAPSAQQSWAPAFAGSQGSSSSSSSSSCLSQYFEKFDVKESSYHLLVSRLDLHICDDSQSREPGDNCKHWVRHCEAMETRGQWAQKLVMEFQSKVEKWHEETGLKPPWHLGVDSPFRRKADSLSSPRKIPLERSPSQGRQAVFRPPAWNRLRSSCLVIRVDDLDIHQVSTAGQPSKKPSTLLSCSRKLHNLPTQVSAVHIEFTEYYFPDNQELPVPCPNLYIQLNGLTFTVDPVSLLWGNLFCLDLYHSLEQFKAIYKLEDPSQKDEHVDIRLDAFWLKVSFPLEKREQAGLHRPQALVFSASGMTATNTRHAPHCSCPDLQSLFRGFAAAEFFHSNYVQFPKVPGGFSLLHMLFLHHAFQVDSHLPQSSTLPPQRLKASQDLWSVYFTQISLDFEGTENFKGHTLNFVAPFPLSIWACLPLRWQQAQARKLLLATEGRLKPSASFGSPVHSEAFAPDTGSHQRSKTEHDLKSLSGLTEVMEILKEGDTGVDNKGPLPELEDTADVHVLVHSPAHVRVRLDHYQYLALLRLKEVLQGLQEQLTKDTEAMTGSPLQDQTACIGVLFPSAEVALLMHPAPGTVEADSEGSDTTSLIDSELSPSEDREPKSDASSEQSPASPEKVLEDSGVDNPDASQDRPLPLHSSGEMQDSGALAQQEAGKGHEVDSLEAKKLSRTQMPSSPAPLKPPGGRDTAVNGQSELIPLKNIEGELSSAIHITKDATKEALHATMDLTKEAVSLTKDAFSLGRDRMTSTVHRMLSLPPAKEPVAKIDEGVAAPVSGGAARLRFFSMKRTVSQQSFDGVSLDNSGPEDRISVDSDGSESFVMLLESESGPESLPSGSLPNVIDSAGVQGSPVVDSYGQASPEANSSVSPSGEDLNLHLVSVLVLKVNAVSLGIELRGEDLTVALQAEELTLQQLGTVGLWQFLHGQCPGTSCQESSTLKTDHIRPAVGLRFEVGPGAAVHSLLAAQNGFLHFLLRGCDLELLTSVLNGLGPFLEDEETPVVVPMKIELLNSRITLKDDIPPIYPTSPGPVPITLAMEHVVLKRSDDGVFHIGAAAQDRPSAEVLKSEKRQPPKEQVFLVPQVKELPTLQKELIETKQALAQANQDKEKLLQEIRKYNPLFEL", "length": 1377, "header": "tr|A0A287APH8-1|A0A287APH8_PIG Isoform 1 of Bridge-like lipid transfer protein family member 3A OS=Sus scrofa OX=9823 GN=BLTP3A PE=4 SV=2 CANONICAL=A0A287APH8-1" }, "isoforms": [ { "isoform_ac": "A0A287APH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APH8/entry#A0A287APH8-1", "sequence": { "sequence": 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"length": 1377, "header": "tr|A0A287APH8-1|A0A287APH8_PIG Isoform 1 of Bridge-like lipid transfer protein family member 3A OS=Sus scrofa OX=9823 GN=BLTP3A PE=4 SV=2 CANONICAL=A0A287APH8-1" }, "locus": { "chromosome": "7", "start_pos": 30795118, "end_pos": 30731709, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058688.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058688.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045848.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045848.3" } ] } }, { "isoform_ac": "F1RZ15-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APH8/entry#F1RZ15-1", "sequence": { "sequence": "MAGLIKKQILKHLSRFTKNLSPDKINLSTLKGEGQLTNLELDEEVLQNVLELPTWLAITRVYCNRASIRIQWTKLKTHPICLEYGFAEKVVEGMFIIVNSITIKIHSKAFHASFELWQLQGYSVNPNWQQSDLRLTRITDPRRGEVLTFKEITWQTLRIEADATDNGDQDPVTTPLRLITNQGRIQIALKRRTKDCNVIASKLMFLLDDLLWVLTDSQLKAMMKYAESLSEAMEKSAQQRKSLAPEPAQITPPAPSAQQSWAPAFAGSQGSSSSSSSSSCLSQYFEKFDVKESSYHLLVSRLDLHICDDSQSREPGDNCKHWVRHCEAMETRGQWAQKLVMEFQSKVEKWHEETGLKPPWHLGVDSPFRRKADSLSSPRKIPLERSPSQGRQAVFRPPAWNRLRSSCLVIRVDDLDIHQVSTAGQPSKKPSTLLSCSRKLHNLPTQVSAVHIEFTEYYFPDNQELPVPCPNLYIQLNGLTFTVDPVSLLWGNLFCLDLYHSLEQFKAIYKLEDPSQKDEHVDIRLDAFWLKVSFPLEKREQAGLHRPQALVFSASGMTATNTRHAPHCSCPDLQSLFRGFAAAEFFHSNYVQFPKVPGGFSLLHMLFLHHAFQVDSHLPQSSTLPPQRLKASQDLWSVYFTQISLDFEGTENFKGHTLNFVAPFPLSIWACLPLRWQQAQARKLLLATEGRLKPSASFGSPVHSEAFAPDTGSHQRSKTEHDLKSLSGLTEVMEILKEGDTGVDNKGPLPELEDTADVHVLVHSPAHVRVRLDHYQYLALLRLKEVLQGLQEQLTKDTEAMTGSPLQDQTACIGVLFPSAEVALLMHPAPGTVEADSEGSDTTSLIDSELSPSEDREPKSDASSEQSPASPEKVLEDSGVDNPDASQDRPLPLHSSGEMQDSGALAQQEAGKGHEVDSLEAKKLSRTQMPSSPAPLKPPGGRDTAVNGQSELIPLKNIEGELSSAIHITKDATKEALHATMDLTKEAVSLTKDAFSLGRDRMTSTVHRMLSLPPAKEPVAKIDEGVAAPVSGGAARLRFFSMKRTVSQQSFDGVSLDNSGPEDRISVDSDGSESFVMLLESESGPESLPSGSLPNVIDSAGVQGSPVVDSYGQASPEANSSVSPSGEDLNLHLVSVLVLKVNAVSLGIELRGEDLTVALQAEELTLQQLGTVGLWQFLHGQCPGTSCQESSTLKTDHIRPAVGLRFEVGPGAAVHSLLAAQNGFLHFLLRGCDLELLTSVLNGLGPFLEDEETPVVVPMKIELLNSRITLKDDIPPIYPTSPGPVPITLAMEHVVLKRSDDGVFHIGAAAQDRPSAEVLKSEKRQPPKEQVFLVPQTL", "length": 1338, "header": "tr|F1RZ15-1|A0A287APH8_PIG Computationally mapped isoform of Bridge-like lipid transfer protein family member 3A OS=Sus scrofa OX=9823 GN=BLTP3A PE=4 SV=5 CANONICAL=A0A287APH8-1" }, "locus": { "chromosome": "7", "start_pos": 30802735, "end_pos": 30731709, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001707.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001707.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001663.5", "url": "https://www.ensembl.org/id/ENSSSCP00000001663.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1280, "start_aa": "Thr", "end_pos": 1280, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1280", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 251, "start_aa": "Thr", "end_pos": 251, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr251", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RZ15", "url": "https://www.uniprot.org/uniprotkb/F1RZ15" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A287APH8", "url": "https://www.uniprot.org/uniprotkb/A0A287APH8" } ], "pmid": "" }, { "name": "histone deacetylase binding", "id": "GO:0042826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042826", "evidence": [ { "database": "UniProtKB", "id": "A0A287APH8", "url": "https://www.uniprot.org/uniprotkb/A0A287APH8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "late endosome", "id": "GO:0005770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005770", "evidence": [ { "database": "UniProtKB", "id": "A0A287APH8", "url": "https://www.uniprot.org/uniprotkb/A0A287APH8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1119, "end_pos": 1121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287APR9-1", "uniprot_ac": "A0A287APR9", "uniprot_id": "A0A287APR9_PIG", "mass": { "chemical_mass": 85802.0, "monoisotopic_mass": 85802.0 }, "refseq": {}, "gene_names": [ { "name": "HNRNPUL2", "type": "recommended", "evidence": [ { "id": "A0A287APR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9" } ] } ], "protein_names": [ { "name": "Heterogeneous nuclear ribonucleoprotein U-like protein 2", "type": "recommended", "evidence": [ { "id": "A0A287APR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287APR9", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HNRNPUL2", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9", "locus": { "chromosome": "2", "start_pos": 9048768, "end_pos": 9034667, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028542", "url": "https://www.ensembl.org/id/ENSSSCG00000028542" } ] } } ], "crossref": [ { "id": "A0A287APR9", "url": "https://alphafold.ebi.ac.uk/entry/A0A287APR9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028542", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028542", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12884", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12884", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035778", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035778", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036361", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036361", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DSRGLKM", "url": "https://omabrowser.org/oma/group/DSRGLKM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12381", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12381:SF66", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12381:SF66", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02037", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02037", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13671", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13671", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287APR9", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LUR1", "url": "https://www.uniprot.org/uniprotkb/I3LUR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LUR1-1", "url": "https://www.uniprot.org/uniprotkb/I3LUR1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVKRLKVTELRSELQRRGLDSRGLKVDLAQRLQEALDAEMLEDEAGGGGAGPGGACKAEPRPVAASGGGPGGDEEEDEEEEEEDEEALLEDEDEEPPPAQASDEAAQPPPEPPEAAATEAVAESDASEKPAEEATAGSGGVNGGEEQGTVKGEEEEPEERSGDETPGSEAPADKAAEEQGDDQDSEKSKPAGSDGERRGVKRQRDEKDEHGRAYYEFREEAYHSRSKSPPPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKEGCTEVSLLRVGWSVDFSHPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANFEAEEVELSFSKNGEDLGVAFRISKESLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPKTIEECEVILMVGLPGSGKTQWALKYAKENAEKRYNVLGAETVLNQMRMKGLEEPEMDPKSRDLLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKKRLELRKEVEGDDVPESIMLEMKANFSLPEKCDYMDEVTYGELEKEEAQPIVTKYKEEARKLLPPPRSGQTAEIIETSVTGRTEAEAKAMGYRNFYDRYRGDYDRFYGRDYEYNRYRDYYRQYNRDVSIVWGERAAGGRTGARLSRLSTLSPPWLQVMGFPLSSSGRITTTTPRTETDTTGTTTVTKGIGEAPAIVACQP", "length": 771, "header": "tr|A0A287APR9-1|A0A287APR9_PIG Isoform 1 of Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Sus scrofa OX=9823 GN=HNRNPUL2 PE=1 SV=1 CANONICAL=A0A287APR9-1" }, "isoforms": [ { "isoform_ac": "A0A287APR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9/entry#A0A287APR9-1", "sequence": { "sequence": "MEVKRLKVTELRSELQRRGLDSRGLKVDLAQRLQEALDAEMLEDEAGGGGAGPGGACKAEPRPVAASGGGPGGDEEEDEEEEEEDEEALLEDEDEEPPPAQASDEAAQPPPEPPEAAATEAVAESDASEKPAEEATAGSGGVNGGEEQGTVKGEEEEPEERSGDETPGSEAPADKAAEEQGDDQDSEKSKPAGSDGERRGVKRQRDEKDEHGRAYYEFREEAYHSRSKSPPPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKEGCTEVSLLRVGWSVDFSHPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANFEAEEVELSFSKNGEDLGVAFRISKESLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPKTIEECEVILMVGLPGSGKTQWALKYAKENAEKRYNVLGAETVLNQMRMKGLEEPEMDPKSRDLLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKKRLELRKEVEGDDVPESIMLEMKANFSLPEKCDYMDEVTYGELEKEEAQPIVTKYKEEARKLLPPPRSGQTAEIIETSVTGRTEAEAKAMGYRNFYDRYRGDYDRFYGRDYEYNRYRDYYRQYNRDVSIVWGERAAGGRTGARLSRLSTLSPPWLQVMGFPLSSSGRITTTTPRTETDTTGTTTVTKGIGEAPAIVACQP", "length": 771, "header": "tr|A0A287APR9-1|A0A287APR9_PIG Isoform 1 of Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Sus scrofa OX=9823 GN=HNRNPUL2 PE=1 SV=1 CANONICAL=A0A287APR9-1" }, "locus": { "chromosome": "2", "start_pos": 9046290, "end_pos": 9034991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040608.2", "url": "https://www.ensembl.org/id/ENSSSCT00000040608.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046062.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046062.1" } ] } }, { "isoform_ac": "I3LUR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9/entry#I3LUR1-1", "sequence": { "sequence": "MEVKRLKVTELRSELQRRGLDSRGLKVDLAQRLQEALDAEMLEDEAGGGGAGPGGACKAEPRPVAASGGGPGGDEEEDEEEEEEDEEALLEDEDEEPPPAQASDEAAQPPPEPPEAAATEAVAESDASEKPAEEATAGSGGVNGGEEQGTVKGEEEEPEERSGDETPGSEAPADKAAEEQGDDQDSEKSKPAGSDGERRGVKRQRDEKDEHGRAYYEFREEAYHSRSKSPPPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKEGCTEVSLLRVGWSVDFSHPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANFEAEEVELSFSKNGEDLGVAFRISKESLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPKTIEECEVILMVGLPGSGKTQWALKYAKENAEKRYNVLGAETVLNQMRMKGLEEPEMDPKSRDLLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKKRLELRKEVEGDDVPESIMLEMKANFSLPEKCDYMDEVTYGELEKEEAQPIVTKYKEEARKLLPPPRSGQTAEIIETSVTGRTEAEAKAMWAGSAEATTTGPTGSSTGGSLETEGVTVISTIDTGETMIDSTGETMSTTDTETITDNTTGIGRITTTTPRTETDTTGTTTVTKGIGEAPAIVACQP", "length": 757, "header": "tr|I3LUR1-1|A0A287APR9_PIG Computationally mapped isoform of Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Sus scrofa OX=9823 GN=HNRNPUL2 PE=1 SV=2 CANONICAL=A0A287APR9-1" }, "locus": { "chromosome": "2", "start_pos": 9046290, "end_pos": 9034991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030161.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030161.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027862.2", "url": "https://www.ensembl.org/id/ENSSSCP00000027862.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LUR1", "url": "https://www.uniprot.org/uniprotkb/I3LUR1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D4ABT8-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U-like protein 2", "gene_name": "Hnrnpul2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVKRLKVTELRSELQRRGLDSRGLKMDLAQRLQEALDAEMLEDEAGVGGAGPGGACKAEPRPVAASGGGPGGDEEEDDEEEEEDEEPPPAQALGQAAPPPPEPPETSAMEAEPEASDIPAEATAGSGGVNGGEEHDNGKGEEDGPEERSGDETPGSEAPGDKAVEEQGDDQDSEKSKPAGSDGERRGVKRQRDEKDEHGRAYYEFREEAYHSRSKSPPPPEEEAKDEEEDQTLVNLDTYTSDLHFQISKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKEGCTEVSLLRVGWSIDFSCSQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANFETGEVELSFSKNGEDLGVAFRISKESLGDRALLPHVLCKNCVIELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPKTIEECEVILMVGLPGSGKTQWALKYAKENPEKRYNVLGAETVLTQMRMKGLEEPEMDPKSRDLLVQQASQCLSKLVQIASRSKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKKRLELRKEVEGDDVPESIMLEMKANFSLPEKCDYMDEVTYGELEKEEAQPIVTKYKEEARKLLPPSEKRTNRRNNRNKRNRQNRSRGQGYVGGQRRGYDNRAYGQQYWGQSGNRGGYRNFYDRYRGDYERFYSRDYEYNRYRDYYRQYNRDWQNYYYHHQQDRDRYYRNYYGYQGYR", "length": 736 }, "evidence": [ { "id": "A0A287APR9", "url": "https://omabrowser.org/oma/group/A0A287APR9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BNQ9-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U-like protein 2", "gene_name": "HNRNPUL2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEVKRLKVTELRSELQRRGLDSRGLKVDLAQRLQEALDAEMLEDEAGGGGAGPGGACKAEPRPVAASGGGPGGDEEEDEEEEEEDEEALLEDEDEEPPPAQASGQAAQPPPEPPEAAAVEAEAEPDASEKAAEEATAESGGVNGGEEQGTGKGEEDEPEERSGDETPGSEAPGDKAAEEQGDDQDSEKSKPAGSDGERRGVKRQRDEKDEHGRAYYEFREEAYHSRSKSPPPPEEEVKDEEEDHTLVNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKEGCTEVSLLRVGWSVDFSHPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANFEAEEVELSFSKNGEDLGVAFRISKESLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPKTIEECEVILMVGLPASGKTQWALKYAKENPEKRYNVLGAETVLNQMRMKGLEEPEMDPKSRDLLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKKRLELRKEVEGDDVPESIMLEMKANFSLPEKCDYMDEVTYGELEKEEAQPIVTKYKEEARKLLPPSEKRTNRRNNRNKRNRQNRSRGQGYVGGQRRGYDNRAYGQQCWGQSGNRGGYRNFYDRYRGDYDRFYGRDYEYNRYRDYYRHQYTRDWQNYYYHHPQDRDRYYRNYYGYQGYR", "length": 749 }, "evidence": [ { "id": "A0A287APR9", "url": "https://omabrowser.org/oma/group/A0A287APR9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q00PI9-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U-like protein 2", "gene_name": "Hnrnpul2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVKRLKVTELRSELQRRGLDSRGLKMDLAQRLQEALDAEMLEDEAGVGGAGPGGACKAEPRPVAASGGGPGGDEEEEDDDEEEDEEALLEDEDEEPPPAQALGQAAQPPPEPPETSAMEAESEASDTPAEATAGSGGVNGGEEHDNGKGEEDGPEERSGDETPGSEAPGDKAVEEQGDDQDSEKSKPAGSDGERRGVKRQRDEKDEHGRAYYEFREEAYHSRSKSPPPPEEEAKDEEEDQTLVNLDTYTSDLHFQISKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKEGCTEVSLLRVGWSVDFSCSQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANFETEEVELSFSKNGEDLGVAFRISKESLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPKTIEECEVILMVGLPGSGKTQWALKYAKDNPERRYNVLGAETVLTQMRMKGLEEPEMDPKSRDLLVQQASQCLSKLVQIASRSKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKRRLELRKEVEGDDVPESIMLEMKANFSLPEKCDYMDEVTYGELEKEEAQPIVTKYKEEARKLLPPSEKRTNRRNNRNKRNRQNRSRGQGYVGGQRRGYDNRAYGQQYWGQSGNRGGYRNFYDRYRGDYERFYSRDYEYNRYRDYYRQYNRDWQNYYYHHQQDRDRYYRNYYGYQGYR", "length": 745 }, "evidence": [ { "id": "A0A287APR9", "url": "https://omabrowser.org/oma/group/A0A287APR9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q1KMD3-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U-like protein 2", "gene_name": "HNRNPUL2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEVKRLKVTELRSELQRRGLDSRGLKVDLAQRLQEALDAEMLEDEAGGGGAGPGGACKAEPRPVAASGGGPGGDEEEDEEEEEEDEEALLEDEDEEPPPAQALGQAAQPPPEPPEAAAMEAAAEPDASEKPAEATAGSGGVNGGEEQGLGKREEDEPEERSGDETPGSEVPGDKAAEEQGDDQDSEKSKPAGSDGERRGVKRQRDEKDEHGRAYYEFREEAYHSRSKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKEGCTEVSLLRVGWSVDFSRPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANFETEEVELSFSKNGEDLGVAFWISKDSLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPKTIEECEVILMVGLPGSGKTQWALKYAKENPEKRYNVLGAETVLNQMRMKGLEEPEMDPKSRDLLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKKRLELRKEVEGDDVPESIMLEMKANFSLPEKCDYMDEVTYGELEKEEAQPIVTKYKEEARKLLPPSEKRTNRRNNRNKRNRQNRSRGQGYVGGQRRGYDNRAYGQQYWGQPGNRGGYRNFYDRYRGDYDRFYGRDYEYNRYRDYYRQYNRDWQSYYYHHPQDRDRYYRNYYGYQGYR", "length": 747 }, "evidence": [ { "id": "A0A287APR9", "url": "https://omabrowser.org/oma/group/A0A287APR9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A287APR9", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287APR9", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287APR9", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "A0A287APR9", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "alternative mRNA splicing, via spliceosome", "id": "GO:0000380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000380", "evidence": [ { "database": "UniProtKB", "id": "A0A287APR9", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 596, "end_pos": 598, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287APR9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 771, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287APR9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287APR9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287APR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 227, "end_pos": 420, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287APR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APR9" }, { "id": "PS50800", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50800" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAP", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 37, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 596, "end_pos": 598 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287APT5-1", "uniprot_ac": "A0A287APT5", "uniprot_id": "A0A287APT5_PIG", "mass": { "chemical_mass": 51595.0, "monoisotopic_mass": 51595.0 }, "refseq": { "ac": "XP_020922718", "name": "F-box only protein 47", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922718" }, "gene_names": [ { "name": "FBXO47", "type": "recommended", "evidence": [ { "id": "A0A287APT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APT5" } ] }, { "name": "FBXO47", "type": "synonym", "evidence": [ { "id": "XP_020922718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922718" } ] } ], "protein_names": [ { "name": "F-box only protein 47", "type": "synonym", "evidence": [ { "id": "XP_020922718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922718" } ] }, { "name": "F-box protein 47", "type": "synonym", "evidence": [ { "id": "A0A287APT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APT5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287APT5", "url": "https://www.uniprot.org/uniprotkb/A0A287APT5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBXO47", "url": "https://www.uniprot.org/uniprotkb/A0A287APT5", "locus": { "chromosome": "12", "start_pos": 23209338, "end_pos": 23181727, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036532", "url": "https://www.ensembl.org/id/ENSSSCG00000036532" } ] } } ], "crossref": [ { "id": "A0A287APT5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287APT5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036532", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036532", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22112", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22112", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110256015", "url": "https://www.ncbi.nlm.nih.gov/gene/110256015", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056622", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056622", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110256015", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256015", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AFACVTM", "url": "https://omabrowser.org/oma/group/AFACVTM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287APT5", "url": "https://www.orthodb.org/?gene=A0A287APT5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34098", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34098", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34098:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34098:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24467", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24467", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020922718", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922718", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287APT5", "url": "https://www.uniprot.org/uniprotkb/A0A287APT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APT5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRVNSSFTLIPNQKYRRSNRRSSYFSNNLASDSQPLSTLGNFKALPLEIFQIILRYLSVKDISMLSMVSKTISQHIINYISTSSGSKRLLLPDFHNLELPDRKQESAILEYYRSLGLLFKRCTLLLPTKERLKYIHKILAEVSCFKFSGCAAPLQCLGLPCYGMFLQTLTAGWDELECHRVFNFLCELTNLPRKMQTVVCSKPGSARKLELRIRLFCRRVLLDHWTHRSDSAFWLTRILKPWPMVNQARLLYIIFGPVSPQDGQVVWQRMIEGPTDEPSLKGLADAIKLLYDTGTKEWTADDIISLVDELSVVPREWLLENNARLLILSGNNICFTFMASKAVNGRAIELARLIVFLALVCEKELYCMDWAVKMMQKVCKVFSTPVERNNFLQSVANAFACVTMEMLQSVMSGDRDEDDRSFLNLYHLVQAQANFHKEVLSLTVNTLST", "length": 451, "header": "tr|A0A287APT5-1|A0A287APT5_PIG Isoform 1 of F-box protein 47 OS=Sus scrofa OX=9823 GN=FBXO47 PE=4 SV=1 CANONICAL=A0A287APT5-1" }, "isoforms": [ { "isoform_ac": "A0A287APT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APT5/entry#A0A287APT5-1", "sequence": { "sequence": "MASRVNSSFTLIPNQKYRRSNRRSSYFSNNLASDSQPLSTLGNFKALPLEIFQIILRYLSVKDISMLSMVSKTISQHIINYISTSSGSKRLLLPDFHNLELPDRKQESAILEYYRSLGLLFKRCTLLLPTKERLKYIHKILAEVSCFKFSGCAAPLQCLGLPCYGMFLQTLTAGWDELECHRVFNFLCELTNLPRKMQTVVCSKPGSARKLELRIRLFCRRVLLDHWTHRSDSAFWLTRILKPWPMVNQARLLYIIFGPVSPQDGQVVWQRMIEGPTDEPSLKGLADAIKLLYDTGTKEWTADDIISLVDELSVVPREWLLENNARLLILSGNNICFTFMASKAVNGRAIELARLIVFLALVCEKELYCMDWAVKMMQKVCKVFSTPVERNNFLQSVANAFACVTMEMLQSVMSGDRDEDDRSFLNLYHLVQAQANFHKEVLSLTVNTLST", "length": 451, "header": "tr|A0A287APT5-1|A0A287APT5_PIG Isoform 1 of F-box protein 47 OS=Sus scrofa OX=9823 GN=FBXO47 PE=4 SV=1 CANONICAL=A0A287APT5-1" }, "locus": { "chromosome": "12", "start_pos": 23208334, "end_pos": 23185231, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044590.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044590.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045896.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045896.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287APT5", "url": "https://www.uniprot.org/uniprotkb/A0A287APT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110256015", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256015", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LX24-1", "protein_name": "F-box protein 47", "gene_name": "Fbxo47", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASRVNTTFTLIPSSKCRRLNHQSSDFCNTLDSDPQLLSTLGNFKVLPLEILHIILRYLSVKDIGMLSMVSKTVSQHIINYISTSSGSRRLLLQNFHDLDLPGTKEETALLEHYRALGLLFKRCTLLLPTKERLKYIQKILSEVPCFKFSGCSAPLQCLGLSCYGMFLQTLTAGWDELECHRVYNFLCEQTNLSRKMQTVVCNKPGSARKLELRVRLFCRNVLLDHWTHRSDSAFWLTRILKPWPMVNQARLLYIIFGPTSPHDGQVIWQEMIEGPTDESSLKGLANAIKLLYDTGAKGWTADDVISLVDELSVVPREWLLENNARLLILSGNNICFTFMASKAVNGRAIELARLIVFLALVCEKELYCMDWTVRMMQKVCKVFNTATERKSFLQSVANAFACVTMEMLQPVMSGERDDDDRGFLNLFHLLHAQANFHKEVLYLTMNAVSS", "length": 451 }, "evidence": [ { "id": "A0A287APT5", "url": "https://omabrowser.org/oma/group/A0A287APT5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A2A6H3-1", "protein_name": "F-box only protein 47", "gene_name": "Fbxo47", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASRVNTSFTLIPKQKCRRSNHHSSYFCNTLDSDPQLLSTLGNFKVLPLEILHIILRYLSVKDIGMLSMVSKTVSQHIINYISTSSGSRRLLLQNFHDLDLPGTKEETALLEHYRALGLLFKRCTLLLPTKERLKYIHKILSEVSCFKFSGCSVPLQCLGLSCYGMFLQTLTAGWDELECHRVYNFLCELTNLSRKMQTVVCNKPGSARKLELRVRLFCRNVLLDHWTHRSDSAFWLTRILKPWPMVNQARLLYIIFGPTSPHDGQVIWQEMIEGPTDESSLKGLANAIKLLYDTGAKGWTADDVISLVDELSVVPREWLLENNARLLILSGNNICFTFMASKAVNGRAVELARLVVFLALVCEKELYCMDWTVRMMQKVCKVFSTAAERKSFLQSIANAFACVTMEMLQPVMSGDRDDDDRGFLNLFHLLHAQANFHKEVLYLTMNAISS", "length": 451 }, "evidence": [ { "id": "A0A287APT5", "url": "https://omabrowser.org/oma/group/A0A287APT5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1C4J7-1", "protein_name": "F-box protein 47", "gene_name": "FBXO47", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTSTARTSCTSGPNQKHRGSNHHSRQSCNTVDTDSQSLSTLGYFKTLPLEIFQMLLSYLSVKDISVLSMVSKAISNRLINYISTPSGNRRLLLQDFHNIKLSGKREGSYIIEHYKSLGLLLKRCTLLLPTKDRLKYIHKVLSEVSCFKLNGCPSPLHCVGLQCYGVFLQILIAGWDELECHRVFNFLCELSNLPRKVQAVVSCKPGSARKLELRIRLFCRSVLLNHWIHRSDSAFWLTRILKPWPMVNQARLLYIIFGPVSSLDGHVVWQKMIEGPTDETSLKGLADAIKLLYDPEAREWTADDVISLVDELSVVPREWLLENNARLLILSGNNICFTFMASKAVNGRAVELARLVVFLALVCEKDLYCMDWAVKMMQKVCKVFSTPGERNIFLQSVENAFAHMVMDMLQAVLAGNRDQEDISFLNLFHLVNAQANFHKEILYLTMRSGSNTI", "length": 453 }, "evidence": [ { "id": "A0A287APT5", "url": "https://omabrowser.org/oma/group/A0A287APT5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F6RFM1-1", "protein_name": "F-box protein 47", "gene_name": "FBXO47", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTSRVNTSFTLIPNQKYRRSSRRSSCFSNTFDSDSQPLSTLGNFKALPLEIFQIILKYLSVKDISMLSMVSKTVSQHIINYISTSSGSKRLLLQDFHDLELPDREDTAIVEHYRSLGLLFKRCTLLLPTKERLKYIHKILADVSCFKFNGCAAPLQCVGLLCYGIFLQTLTAGWDELECHRVYNFLCELTHLSRKMQTVVCSKPGSARKLELRIRLFCRNVLLDHWTHRSDSAFWLTCILKPWPMVNQARLLYIIFGPISPQDGQVVWQKMIEGPTDESCLKGLAEAIKLLYDTGTKEWTADDVISLVDELSVVPREWLLENNARLLILSGNNICFTFMASKAVNGRTIELAKLIVFLALVSEKELYCMDWAVKMMQKVCKVFSTPVERNNFLQSVADAFACAIMEMLQLVMSGDGDDDDRSFMNLFHLVQAQASFHKEVLYLTMNVLPS", "length": 450 }, "evidence": [ { "id": "A0A287APT5", "url": "https://omabrowser.org/oma/group/A0A287APT5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5MNV8-1", "protein_name": "F-box only protein 47", "gene_name": "FBXO47", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASRINTNFTLIPNQKLRRSNRQTSCYSKTLGSGFQPISTFGNFKALPLEIFQIILKYLSVKDISMLSMVSKTVSQHIINYISTSSGSKRLLLQDFHNLELPDRRQDSAILEHYRSLGLLFKRCTLLLPTKERLKYIHKILTEVSCFKFNGCAAPMQCLGLTCYGMFLQTLTAGWDELECHRVYNFLCELTNLCRKIQMAVCSKPGSAQKLELRIRLFCRNVLLDHWTHRSDSAFWLTRILKPWPMVNQARLLYIIFGPISPQDGQVVWQEMIEEPTDEFSLKGLADAIKLLYDASTKEWTADDVISLVDELSVVPREWLLENNARLLMLSGNNICFSFMASKAVNGRTIELARLVVFLALVCEKELYCMDWTVKMMQKVCKVFSTPVERKNFLQNVANAFACVIMEMLQSIMSGDRDEDDRSFLNLFHLVHAQANFHKEVLYLTMNTPLST", "length": 452 }, "evidence": [ { "id": "A0A287APT5", "url": "https://omabrowser.org/oma/group/A0A287APT5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287APT5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 451, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287APT5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287APT5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287APT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APT5" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 91, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 6, "end_pos": 8 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287APX2-1", "uniprot_ac": "A0A287APX2", "uniprot_id": "A0A287APX2_PIG", "mass": { "chemical_mass": 87385.0, "monoisotopic_mass": 87385.0 }, "refseq": { "ac": "XP_003134763", "name": "GRIP and coiled-coil domain-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134763" }, "gene_names": [ { "name": "GCC1", "type": "recommended", "evidence": [ { "id": "A0A287APX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2" } ] }, { "name": "GCC1", "type": "synonym", "evidence": [ { "id": "XP_003134763", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134763" } ] } ], "protein_names": [ { "name": "GRIP and coiled-coil domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A287APX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2/entry#names_and_taxonomy" } ] }, { "name": "GRIP and coiled-coil domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "XP_003134763", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134763" } ] }, { "name": "Golgi coiled-coil protein 1", "type": "synonym", "evidence": [ { "id": "A0A287APX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Probably involved in maintaining Golgi structure.", "evidence": [ { "database": "UniProtKB", "id": "A0A287APX2", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2#function" }, { "database": "UniProtKB", "id": "ARBA00055375", "url": "https://www.uniprot.org/uniprotkb/ARBA00055375#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287APX2", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GCC1", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2", "locus": { "chromosome": "18", "start_pos": 20707138, "end_pos": 20701737, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035211", "url": "https://www.ensembl.org/id/ENSSSCG00000035211" } ] } } ], "crossref": [ { "id": "ENSSSCG00000035211", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035211", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522471", "url": "https://www.ncbi.nlm.nih.gov/gene/100522471", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051952", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051952", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522471", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522471", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AEMQAIN", "url": "https://omabrowser.org/oma/group/AEMQAIN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287APX2", "url": "https://www.orthodb.org/?gene=A0A287APX2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23157", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23157", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23157:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23157:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6811440", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003134763", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134763", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287APX2", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKFGMNFGGGPSKRDLLETIETQKKQLLQYQARLKDVVRAYKSLLKEKEALEASIKVLSVSHEADVGLAGVQPQSLTFPDSVDDRCSTHSEDSTGTATSLDTAASLTSTKGEFGVEDDRPACGPPPPKSEEASGSESGVSSSSGDGPPGGGEVDKRVHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMKQDLEDASKKLEEERGRLEGELKGLQEQVAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGQAYAAGQVEGFELQTKQLTREVEELKGELQALRDEKNRPDPRLQELQEEAACLKSHFQAQLQQEMRKTALAEDQLRQQSQVEEQRVAALENQISEVSELLGTYEKAKQKDQLTIQKLKERILQLDLENRTLALAASSRSPLDSHGEESSLDVNVLKDKMEKLKKLLQVAARKSQATLDVEKLCDLEIMPSSEAADGEKATALYYQQELKQLKEEFERYKVRAQVVLKSKNTKDGNLGKELEEAQEQLAELKEKYISLRLSCEELERQHQQEAEGWKQELARLQHTHRQELERSQLDFRDRTLKLEEELHKQRDRALAVLAEKDLELEQLRSVALSSGLPGRRSPVGGSGPGDPADTSSPDSLTQALQLAAASEPTFFLYAEQLARKEVEITSLRKQRHRLEVEVHQLQDRLLEEGERHREEVGALQSHIEKNIRDQSREGANLEYLKNIIYRFLTLPDALGRQQTLTAILTILHFSPEEKQVIMRLPAAGSWWPSGKR", "length": 775, "header": "tr|A0A287APX2-1|A0A287APX2_PIG Isoform 1 of GRIP and coiled-coil domain-containing protein 1 OS=Sus scrofa OX=9823 GN=GCC1 PE=4 SV=1 CANONICAL=A0A287APX2-1" }, "isoforms": [ { "isoform_ac": "A0A287APX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2/entry#A0A287APX2-1", "sequence": { "sequence": "MEKFGMNFGGGPSKRDLLETIETQKKQLLQYQARLKDVVRAYKSLLKEKEALEASIKVLSVSHEADVGLAGVQPQSLTFPDSVDDRCSTHSEDSTGTATSLDTAASLTSTKGEFGVEDDRPACGPPPPKSEEASGSESGVSSSSGDGPPGGGEVDKRVHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMKQDLEDASKKLEEERGRLEGELKGLQEQVAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGQAYAAGQVEGFELQTKQLTREVEELKGELQALRDEKNRPDPRLQELQEEAACLKSHFQAQLQQEMRKTALAEDQLRQQSQVEEQRVAALENQISEVSELLGTYEKAKQKDQLTIQKLKERILQLDLENRTLALAASSRSPLDSHGEESSLDVNVLKDKMEKLKKLLQVAARKSQATLDVEKLCDLEIMPSSEAADGEKATALYYQQELKQLKEEFERYKVRAQVVLKSKNTKDGNLGKELEEAQEQLAELKEKYISLRLSCEELERQHQQEAEGWKQELARLQHTHRQELERSQLDFRDRTLKLEEELHKQRDRALAVLAEKDLELEQLRSVALSSGLPGRRSPVGGSGPGDPADTSSPDSLTQALQLAAASEPTFFLYAEQLARKEVEITSLRKQRHRLEVEVHQLQDRLLEEGERHREEVGALQSHIEKNIRDQSREGANLEYLKNIIYRFLTLPDALGRQQTLTAILTILHFSPEEKQVIMRLPAAGSWWPSGKR", "length": 775, "header": "tr|A0A287APX2-1|A0A287APX2_PIG Isoform 1 of GRIP and coiled-coil domain-containing protein 1 OS=Sus scrofa OX=9823 GN=GCC1 PE=4 SV=1 CANONICAL=A0A287APX2-1" }, "locus": { "chromosome": "18", "start_pos": 20706294, "end_pos": 20702108, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054048.1", "url": "https://www.ensembl.org/id/ENSSSCT00000054048.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046005.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046005.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287APX2", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522471", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522471", "resource": "KEGG Pathway" }, { "id": "R-SSC-6811440", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "resource": "Reactome", "description": "Retrograde transport at the Trans-Golgi-Network" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PCW8-1", "protein_name": "GRIP and coiled-coil domain-containing protein 1", "gene_name": "GCC1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEKFGMNFGGGPSKKELLETIESQKKQLLNYQARLKDVVIAYKSLINEKEALEASLKVLSASHEADVGLSGAQPACVAASSPSLADPADDKSSVHSEDSTGTATSADTTASLASAKGEQGAEDDKPAAAAASLKSEEANGSEGGGGASSGDVPCAAGEADRRVLQLKTQLATLTSALSTVTQEKSRMEASYQADKKKMKQDLDDAVKKAEDETDRLETELRSVQEQLAETKARLITQQHDRAQEQSDHAVMLRELQKLLQSERALRQDAELKLEETREVLAGRVCMADRAEGYELQIKQLSQEVEDLKRELQAVQEERKKPDPRVQDLQEEMANLKNHFQAQLLQEMRKTAQAEEQLRQHAQMEEQRVADLEGQVSEVSGLLGTYEKAKQKDQVVIQKLKDRIVQLDQENKTLAIAASSRSPADVNVEEGNLDVNVLKDKMEKLKKLLQAAAKKSQPTLDIEKLCELELPKGTEAGDGEKATALYYQQELKQLKEEFERYKMRAQVVLKNKSAKDGNLAKELEEAQEQLADLKEKYVVLQLSSEEVEKQHQLDMEAKRQEFCQLQQLHRQELERCQLEYRERALKLEEEMHKQRDRALAVLAEKDQELEQLRSVVLPYTGLQGSKNYMAPGTDTASSDPPANGSTEILPQALHLSTNAEPTFILYAEQLARKEVEIVALRKQKHKLEMQVHQLQEKVLVEEERHQEEVSALQSEIQKNFRDKSREGANLEYLKNIVYRFLTLPDSLGRQQTLTAILTILHFSPEEKQAVRKQSAHSSWWLSGKR", "length": 784 }, "evidence": [ { "id": "A0A287APX2", "url": "https://omabrowser.org/oma/group/A0A287APX2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8M2BBV8-1", "protein_name": "GRIP and coiled-coil domain-containing protein 1", "gene_name": "gcc1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKFGMSFGGGPSKKELLETIEVQKKQLVKYQTRFKDVVRAYQSLLKEKEALEASLKVLTISQEVDLSRVDNLSFGEASGSRALPSDLGDDRCSLHSEDSLDTAASAETATSVTSNSTKGDQIEDDQSCAVDGATAGAVVHTSPQQSEEASGSESGVSTSSSGCSEPTPQVADTDRRVIQLKTQLSTLTSSLATVTQEKSRMEASFQADKRKMKQELEELQARLEEDKKQHQAELQNLQEQFAESKARVITQQHEREQEQGDHALMLRELQKLLQEERGLRQDAELKLEDARATLAEAMQAADRGLDYESQLKEIIQERDELKKSLKAAAVENSKPDPRVEELQQENADLKAHFNQQLQQEIRKVAQADELLREQAKMEEIRVASLEERVSELSELLGACEKARQKDQQNTQRLRERILQLDTENKTLAMAAVNRTTSSDLNMDDMNLNVDALKDKLEKVKKLLLLAAQRSQDQSLDIEKLLEGGEKDHEVSESEKASALHYQQELRQIKEEFERYKMRAQGVLKNKNTKDGNQAKELEEARDQLAELKEKYINLRIQSDEAEVKHKRDLEERQQGLAALQQTHKQEVEKLEAQHRENFMRLEEELHKQRDRTMALLAEKDLELERLRASAVMGFGSHQRHIINSSAALEGGDLDEVDPEQEESDIIAQALKLAGPNEPTLLLYAEQLARKEVEVAALRKQKHRLEEDLHQLQGKLIANGERHEEELVELRGQLDKRIRDKGRDGANLEYLKNVIYKFLTLQDTRGRQQTLTAILTILHFSPQEKQVVLKQQQHSWWTAGMR", "length": 802 }, "evidence": [ { "id": "A0A287APX2", "url": "https://omabrowser.org/oma/group/A0A287APX2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZPA1-1", "protein_name": "GRIP and coiled-coil domain-containing protein 1", "gene_name": "Gcc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEKFGMNFGGGPSKKDLLETIETQKKQLLQYQARLKDVVRAYKSLLKEKEALEASIKVLSVSHEADAGLSGVQPPGLTFPDSVDDRCSTHSEDSTGTATSLDTAASLTSVKGEFGVEDDRVARGPLPPKSEEASGSESGVSSSSGDGPSAGSEIDKRVHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMKQDLEDANKKAEEERGRLEGDLKGLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAADQLEGFELQTKQLTREVEELKGELQAIREEKNRPDPRLQELQQEAARLKSHFQAQLQQEMRKTALAEDQLRQQSQVEEQRVAALENQISEVSELLGTYEKAKQKDQLAIQKLKDRILQLDLENKTLALAASSRPSLDIHGDESSLDINVLKDKMEKLKRLLQVAARKSQVTLDVEKLCDPDIMANSEAADGEKATALYYQQELKQLKEEFERYKMRAQVVLKSKNTKDGNLGKELEAAQEQLAELKDKYISLRLSCEELENQHQQEAEDWKQELTRLQQLHQQELERSQLDFRDRTMKLEEELHKQRDRALAVLAEKDLELEQLRSVALSSGLPGRRSPVGGVGGGGLGDPDDPASSDSLTQALQLAAANEPTFFLYAEQLARKEVEITSLRKQKHRLEVEAHQLQERLLEEGERHREEVGALQSHIEKNIRDQSREGANLEYLKNIIYRFLTLPDSLGRQQTLTAILTILHFSPEEKQVLMRLPSGGSWWPSGKR", "length": 778 }, "evidence": [ { "id": "A0A287APX2", "url": "https://omabrowser.org/oma/group/A0A287APX2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3GZ80-1", "protein_name": "GRIP and coiled-coil domain-containing protein 1", "gene_name": "Gcc1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFGMNFGGGPSKKDLLETIETQKKQLLQYQARLKDVVRAYKSLLKEKEALEASIKVLSVSHEADVGLASVQPPGLTLPDSVDDRCSTHSEDSTGTATSLDTAASLTSIKGEFGVEDDRMARGPLPLKSEEASGSESGVSSSSGDGPSAGSEMDKRLHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMKQDLEDANKKAEEERDRLVGELKGLQEQIAETKARLITQQHDRAQEQSDHAVMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAADQIEGFELQTKQLTREVEELKGELQAIQDEKNRPDPRLQELQQEAARLKSHFQAQLQQEMRKTALAEDQLRQQCQVEEQRVAALENQISEVSELLGTYEKAKQKDQLTIQKLKERILQLDLENKTLALAASSRSPLDSHGDESSLDINVLKDKMEKLKRLLQVAARKSQVTLDVEKLCDPEIMPSSEAADGEKATALYYQQELKQLKEEFERYKMRAQVVLKNKNTKDGSLAKELEAAQEQLAELKEKYISLRLSCEELESQHQQEAEDWKQELARLQQLHRQELEHSQLDFRDRTLKLEEELHKQRDRALAVLAEKDLELEQLRSVALSSGLPGRRSPVGGVGGGGLGDPADTASSDSLTQALQLAAANEPTFFLYAEQLARKEVEITSLRKQKHRLEMEAHQLQEKLLEEGERHREEVGALQSHIEKNIRDQSREGANLEYLKNIIYRFLTLPDSLGRQQTLTAILTILHFSPEEKQVIMRLPSGGGWWPSGKR", "length": 778 }, "evidence": [ { "id": "A0A287APX2", "url": "https://omabrowser.org/oma/group/A0A287APX2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8S2T0-1", "protein_name": "Protein GRIP", "gene_name": "GRIP", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSEDKESDVVGEEEESHVIKEDKELNDASNETLTENGDQLLQMIAELRLENDFLRSQFEGLKDEVAQGRSLQKAEQVEADSAQLKQLQEQVASLSREIDVEKQTRVAAEQALEHLREAYSEADAKSQEYSSKFSQVEQKLDQEIKERDEKYADLDAKFTRLHKRAKQRIQEIQKEKDDLDARFREVNETAERASSQHSSMQQELERTRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQSLLDKDQILEDLKKQLQAVEERKQIAVTELSAKHQKNLEGLEAQVVDALSERDKAAETISSLQVLLAEKESKIAEMEAAATGEAARLRAAAETLKGELAHLKSENEKEKETWEASCDALKSKLEIAESNYLQAEIEVAKMRSQLGSEMSMQTQILSTKDAELKGAREEINRLQSEFSSYKIRAHALLQKKDMELAAAKDSEQIKSLEEALKEAEKEVYLVSAERDRAQQDLQSALASLEKELEERAGALKDASEQIKSLEVKLDSTVARNQAEKQAWEEDLRVLEETWRRRCEALTAQNEASPAEGIEKELENAKLRNKRMKEEHESVRELADRLIEEKDREISRLVDEMTNLRKSMESKPVWNKSPSQVHHYGNNNTESQQQDVSNLSTSAAEHQILILARQQAQREEELAQTQRHILALQEEIEELERENRLHSQQEAVLKTELREMERKQKREGVDMTYLKNVILKLLETGEVEALLPVVGMLLQFSPEEIQKCQQAYHSSTTAATTTEATPSPASEGSGLSVFSRFSFS", "length": 788 }, "evidence": [ { "id": "A0A287APX2", "url": "https://omabrowser.org/oma/group/A0A287APX2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96CN9-1", "protein_name": "GRIP and coiled-coil domain-containing protein 1", "gene_name": "GCC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEKFGMNFGGGPSKKDLLETIETQKKQLLQYQARLKDVVRAYKSLLKEKEALEASIKVLSVSHEADVGLAGVQLPGLTFPDSVDDRCSTHSEDSTGTATSLDTAASLTSTKGEFGVEDDRPARGPPPPKSEEASWSESGVSSSSGDGPFAGGEVDKRLHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMKQDLEDASNKAEEERARLEGELKGLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAAEQMEGFELQTKQLTREVEELKSELQAIRDEKNQPDPRLQELQEEAARLKSHFQAQLQQEMRKTALAEDQLRQQSQVEEQRVAALENQISEVSELLGTYEKAKQKDQLAIQKLKERILQLDLENKTLALAASSRSPLDSHGEESSLDVNVLKDKMEKLKRLLQVAARKSQVTLDVEKLCDLEIMPSSEAADGEKATALYYQQELKQLKEEFERYKMRAQVVLKSKNTKDGNLGKELEAAQEQLAELKEKYISLRLSCEELEHQHQQEADDWKQELARLQQLHRQELERCQLDFRDRTLKLEEELHKQRDRALAVLTEKDLELEQLRSVALASGLPGRRSPVGGGGPGDPADTSSSDSLTQALQLAAANEPTFFLYAEQLARKEVEITSLRKQKHRLEVEVHQLQDRLLEEGERHREEVAALQSHIEKNIRDQSREGANLEYLKNIIYRFLTLPDSLGRQQTLTAILTILHFSPEEKQVIMRLPTSASWWPSGKR", "length": 775 }, "evidence": [ { "id": "A0A287APX2", "url": "https://omabrowser.org/oma/group/A0A287APX2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D4H2-1", "protein_name": "GRIP and coiled-coil domain-containing protein 1", "gene_name": "Gcc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKFGMNFGGGPSKKDLLETIETQKKQLLQYQARLKDVVRAYKSLLKEKEALEASIKVLSVSHEADVGLSGVQPPGLTFPDSVDDRCSTHSEDSTGTATSLDTAASLTSVKGEFGVEDDRAARGPLPPKSEEASGSESGVSSSSGDGPSAGSEMDKRVHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAADQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLKSHFQAQLQQEMRKTALAEDQLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLENKTLALAASSRSSLDIHGDESSLDINVLKDKMEKLKKLLQVAARKSQVTLDVEKLCDPEIMANSEAADGEKATALYYQQELKQLKEEFERYKMRAQVVLKSKNTKDGSLGKELEAAQEQLAELKDKYISLRLSCEELESQHQQEAEDWKQELARLQQLHRQELERSQLDFRDRTLKLEEELHKQRDRALAVLAEKDLELEQLRSVALSSGLPGRRSPVGGVGGGGLGDPADTASSDSLTQALQLAAANEPTFFLYAEQLARKEVEITSLRKQKHRLEVEAHQLQERLLEEGERHREEVGALQSHIEKNMRDQSREGANLEYLKNIIYRFLTLPDSLGRQQTLTAILTILHFSPEEKQVLMRLPSGGSWWPSGKR", "length": 778 }, "evidence": [ { "id": "A0A287APX2", "url": "https://omabrowser.org/oma/group/A0A287APX2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VGR1-1", "protein_name": "GRIP and coiled-coil domain containing 88 kDa", "gene_name": "GCC88", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEKRQRELEALVSTQKEQLGRYEKRLKDVVTAYKGLLKEKEALETSLAAHAEATAVGESGSPARELESKKTSTDSADGATEGAAPGPPAPPAEGQLQTQIITLMNSLATLSAEKSRMEASFQADKKQLRSQIAQKEQTIQELNTRAKEQAARAKSDVDEIKAKWIVERQEREKETNNQMLMIRELQKLYADERHLKDNIEMQLNNFKTQFASNEAENSRLRELQSQLKEARSQLKQFQAKTEHSAAASASADSAALLQQVRLEMQQLKEQHAVAIRQEQRRVLRAEEQSRRQAALHEDRVASLEARLAELSTTVGSYDRLRQQDQDSIHDLKQQLQDLEQAHVRPTSNSRALNEDVDVATLVDEMVRLKKLLTTANARSANPLDLGEILSFSGQTATRVESHAHCEQQLQGVQQMLEASKQQRQLLEQKVQLQHSHIQTLQEKVQVLNRNIDEAEVELKQQGEKLRLALKNERTKWQEAKAELENETRCKLNELEQLLQKQRQRSLQLLDEKEQEIKTLQTSFEVFHSASGVGSTLATPTLEAAADSFHYSSDTDSVEGEQRERKLKVRSKKMSMGENCHMLHYANELARKDIEITTLRKAKYAAESTLRKAIQDKVTSQQEMHEKIECLKEQVDRLERCKTREGANLEYLKNVIISYIVTRDADGKRHMLNAISAVLQFTAAEMQAINASFQKK", "length": 695 }, "evidence": [ { "id": "A0A287APX2", "url": "https://omabrowser.org/oma/group/A0A287APX2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A287APX2", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A287APX2", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287APX2", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287APX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APX2" }, { "id": "PS50913", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50913" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GRIP", "eco_id": "ECO_0000259", "start_pos": 713, "end_pos": 763, "start_aa": "Gln", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 405, "end_pos": 407 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287APY2-1", "uniprot_ac": "A0A287APY2", "uniprot_id": "A0A287APY2_PIG", "mass": { "chemical_mass": 20231.0, "monoisotopic_mass": 20231.0 }, "refseq": {}, "gene_names": [ { "name": "C1orf146", "type": "recommended", "evidence": [ { "id": "A0A287APY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APY2" } ] } ], "protein_names": [ { "name": "Chromosome 4 C1orf146 homolog", "type": "synonym", "evidence": [ { "id": "A0A287APY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287APY2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287APY2", "url": "https://www.uniprot.org/uniprotkb/A0A287APY2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C1orf146", "url": "https://www.uniprot.org/uniprotkb/A0A287APY2", "locus": { "chromosome": "4", "start_pos": 124812631, "end_pos": 124833375, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000042806", "url": "https://www.ensembl.org/id/ENSSSCG00000042806" } ] } } ], "crossref": [ { "id": "A0A287APY2", "url": "https://alphafold.ebi.ac.uk/entry/A0A287APY2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042806", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042806", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027857", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027857", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31408", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31408", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31408:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31408:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15162", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15162", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287APY2", "url": "https://www.uniprot.org/uniprotkb/A0A287APY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEGDGKEKMKWTTTIIISASLKSSEVATALENRSHKIRYSDSVEDGSVIFSLSGVAFLLVDAQECFMSAEEVFLAKIEKFINIHQNSFLVLSAALHGPEEWKLMFRIQQRFLGSNLRILPVHNAANAVNLMCTIAKITSKPYIDSICYRMITTKAYIIEQSPVWTTLHKIKLSSGAFNPS", "length": 181, "header": "tr|A0A287APY2-1|A0A287APY2_PIG Isoform 1 of Chromosome 4 C1orf146 homolog OS=Sus scrofa OX=9823 GN=C1orf146 PE=4 SV=1 CANONICAL=A0A287APY2-1" }, "isoforms": [ { "isoform_ac": "A0A287APY2-1", 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"MLCLVLSAWCRVVENAREVEVSDSRAASELYLQAKGGEGRTCSLLTVTMSCPAPDPPEGPGTQGMWRGALRILQLPGSLDCPLLQVLAGTAVGEKMEGSLPWIVLWLLEGNNYSSLLLRLDPQGGNLSLLQAALLGAAGRRMQVKQVRPTLWDAGEEARARRAALKSLRSGLLGDTLTEGGLSQLGRALRELRVVKAWSRCSGSRMLNVVEAEAAGLPEPQVTDSTASVGPGLQRGAGSFLLSCAQLRFPPVAGGTASVGPGLQQMHPLGASEEQAQQAPDVPLQFFLAQARRQRLREQHRIWVQEELKHLEQEEEVVAGGRVKGLAAGGEASKEQQRWHREQSVLRLQLEALQAERDTAEQDLVALYDLHVQAARARTCHVLQVFRAWRGLWEEQVTAAEYHYRSLLAGVLQDTIDLATQNRELQAQNQQLQQSRLRAVKPEEKSADQESFGGSVLPPQS", "length": 461, "header": "tr|A0A287APY6-1|A0A287APY6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100513976 PE=4 SV=1 CANONICAL=A0A287APY6-1" }, "isoforms": [ { "isoform_ac": "A0A287APY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APY6/entry#A0A287APY6-1", "sequence": { "sequence": 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"database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002698", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002698", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037171", "url": 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPSAGISKQDIRERIWDYMESENLADFPRPVHHRIPNFKGASRAAEHFPRLQAFRAARTIKVNPDAPQKGARFFVLDSKKTLLVPTPRLRTGLFNKITPPPGATKDVLRKCATSQGVRSYSTPVGLESRLLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAASQATPVVTIVHDCQVVDIPEALLEDHDLTVDYILTPTRVIATGCARPKPAGIIWSKISCEMMRQMPVLRSLRCREEQAGKDVTLRDGHRPLPRVQAALSPGRSPCDPPRPELGSVPSDTVYVGNLPRDARVSELKRALGALGVAPLRLTWQGAQHRAFLRYQDPAAAQHAVSCLQGFRLGANTVRVSLARQQTAGDPAGGRTGGPHPDRCSAGAAP", "length": 386, "header": "tr|A0A287APY9-1|A0A287APY9_PIG Isoform 1 of Methenyltetrahydrofolate synthase domain-containing protein OS=Sus scrofa OX=9823 GN=MTHFSD PE=4 SV=1 CANONICAL=A0A287APY9-1" }, "isoforms": [ { "isoform_ac": "A0A287APY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APY9/entry#A0A287APY9-1", "sequence": { "sequence": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AQ18-1", "uniprot_ac": "A0A287AQ18", "uniprot_id": "A0A287AQ18_PIG", "mass": { "chemical_mass": 54474.0, "monoisotopic_mass": 54474.0 }, "refseq": { "ac": "XP_020947342", "name": "keratin, type II cuticular Hb1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947342" }, "gene_names": [ { "name": "LOC100523123", "type": "recommended", "evidence": [ { "id": "A0A287AQ18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ18" } ] }, { "name": "LOC100523123", "type": "synonym", 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"https://www.uniprot.org/uniprotkb/A0A287AQ18", "locus": {} } ], "crossref": [ { "id": "A0A287AQ18", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AQ18", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022657", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022657", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000033235", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033235", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523123", "url": "https://www.ncbi.nlm.nih.gov/gene/100523123", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032444", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032444", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523123", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523123", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AQ18", "url": "https://www.orthodb.org/?gene=A0A287AQ18", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616:SF52", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616:SF52", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6805567", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020947342", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947342", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AQ18", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQ18-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ18-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYX6", "url": 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"MTCRSGFSSHTFSCASACGPRPGRCCITAAPYRGISCYRGLTGGFGSRSVGGGFRAGSYGRSFGYRSGGVVRPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKCLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVRKSDLEANVEALVQEIDFLRRLYEEEIRVLQAHISDTSVIVKLDNSRDLNMDNIVAEIKAHYDDIASRSRAEAESWYRSKCEEIKATVVRHGETLRRTKEEINELNRMIQRLTAEIENAKCQNSKLEAAVAEAEQQGQVALNDAKCKLAELEAALQKAKQDMACLIKEYQEVLNSKLGLDIEIATYRRLLEGEEQRLCEGVGSVNVCVSSSRGGVVCGDLCVSGSRPVTGSVCSAPCSGNVAVSTGLCAPCGPCSSVTSCGLGTGGVGSCTSNCRKC", "length": 497, "header": "tr|A0A287AQ18-1|A0A287AQ18_PIG Isoform 1 of IF rod domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100523123 PE=3 SV=2 CANONICAL=A0A287AQ18-1" }, "isoforms": [ { "isoform_ac": "A0A287AQ18-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ18/entry#A0A287AQ18-1", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCP00000045989.2" } ] } }, { "isoform_ac": "A0A287AYX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ18/entry#A0A287AYX6-1", "sequence": { "sequence": "MTCRSGFSSHTFSCASACGPRPGRCCITAAPYRGISCYRGLTGGFGSRSVGGGFRAGSYGRSFGYRSGGVVRPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKCLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVRKSDLEANVEALVQEIDFLRRLYEEEIRVLQAHISDTSVIVKLDNSRDLNMDNIVAEIKAHYDDIASRSRAEAESWYRSKCEEIKATVVRHGETLRRTKEEINELNRMIQRLTAEIENAKCQNSKLEAAVAEAEQQGQVALNDAKCKLAELEAALQKAKQDMACLIKEYQEVLNSKLGLDIEIATYRRLLEGEEQSFGGLFLQTLCFYCLDHGWTSFLEFVELGCVKVLAP", "length": 451, "header": "tr|A0A287AYX6-1|A0A287AYX6_PIG Computationally mapped isoform of IF rod domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100523123 PE=3 SV=2 CANONICAL=A0A287AQ18-1" }, "locus": { "chromosome": "5", "start_pos": 17613983, "end_pos": 17609534, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038639.2", "url": "https://www.ensembl.org/id/ENSSSCT00000038639.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049351.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049351.2" } ] } }, { "isoform_ac": "A0A8W4FD13-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ18/entry#A0A8W4FD13-1", "sequence": { "sequence": "WHPLHRGGCGSHTFSCASACGPRPGRCCITAAPYRGISCYRGLTGGFGSRSVGGGFRAGSYGRSFGYRSGGVVRPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKCLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVRKSDLEANVEALVQEIDFLRRLYEEEIRVLQAHISDTSVIIKAHYDDIASRSRAEAESWYRSKCEEIKATVVRHGETLRRTKEEINELNRMIQRLTAEIENAKCQNSKLEAAVAEAEQQGQVALNDAKCKLAELEAALQKAKQDMACLIKEYQEVLNSKLGLDIEIATYRRLLEGEEQRLCEGVGSVNVCE", "length": 413, "header": "tr|A0A8W4FD13-1|A0A287AQ18_PIG Computationally mapped isoform of IF rod domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100523123 PE=3 SV=1 CANONICAL=A0A287AQ18-1" }, "locus": { "chromosome": "5", "start_pos": 17614227, "end_pos": 17609520, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097180.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097180.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077284.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077284.1" } ] } }, { "isoform_ac": "A0A8W4FGM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ18/entry#A0A8W4FGM6-1", "sequence": { "sequence": "MTCRSGFSSHTFSCASACGPRPGRCCITAAPYRGISCYRGLTGGFGSRSVGGGFRAGSYGRSFGYRSGGVVRPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKCLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVRKSDLEANVEALVQEIDFLRRLYEEEIRVLQAHISDTSVIVKLDNSRDLNMDNIVAEIKAESWYRSKCEEIKATVVRHGETLRRTKEEINELNRMIQRLTAEIENAKCQNSKLEAAVAEAEQQGQVALNDAKCKLAELEAALQKAKQDMACLIKEYQEVLNSKLGLDIEIATYRRLLEGEEQRLCEGVGSVNVCE", "length": 415, "header": "tr|A0A8W4FGM6-1|A0A287AQ18_PIG Computationally mapped isoform of IF rod domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100523123 PE=3 SV=1 CANONICAL=A0A287AQ18-1" }, "locus": { "chromosome": "5", "start_pos": 17613983, "end_pos": 17609520, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106494.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106494.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078385.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078385.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., 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Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQ32", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ32" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110256008", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256008", "resource": "KEGG Pathway" }, { "id": "R-SSC-6805567", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "resource": "Reactome", "description": "Keratinization" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZBR0-1", "protein_name": "Keratin associated protein 3-2", "gene_name": "Krtap3-2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACCVTRCCSVPTGPATTICSSDKSCRCGVCLPSTCPHTIWQLEPTCCDNCPPPCHIPQPCVPTCFLLNSCHPTPDLLTVNLTTYVQPGCEEPCTPRCC", "length": 99 }, "evidence": [ { "id": "A0A287AQ32", "url": "https://omabrowser.org/oma/group/A0A287AQ32/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3MX57-1", "protein_name": "Keratin-associated protein 3-3", "gene_name": "LOC100294937", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MACCAPFCCSARTSPATTICSSDKFCRCGVCLPSTCPHTVWLLEPTCCDNCPPPCHIPQPCVPTCFLLNSSQPTPGLETINLTTYTQPSCEPCIPSCC", "length": 98 }, "evidence": [ { "id": "A0A287AQ32", "url": "https://omabrowser.org/oma/group/A0A287AQ32/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9BYR7-1", "protein_name": "Keratin-associated protein 3-2", "gene_name": "KRTAP3-2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDCCASRSCSVPTGPATTICSSDKSCRCGVCLPSTCPHTVWLLEPICCDNCPPPCHIPQPCVPTCFLLNSCQPTPGLETLNLTTFTQPCCEPCLPRGC", "length": 98 }, "evidence": [ { "id": "A0A287AQ32", "url": "https://omabrowser.org/oma/group/A0A287AQ32/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D638-1", "protein_name": "Keratin-associated protein 3-2", "gene_name": "Krtap3-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MACCVARCCSVPTGPATTICSSDKSCRCGVCLPSTCPHTIWQLEPTCCDNCPPPCHIPQPCVPTCFLLNSCHPTPDLLTVNLTTYVQPGCEEPCVPRCC", "length": 99 }, "evidence": [ { "id": "A0A287AQ32", "url": "https://omabrowser.org/oma/group/A0A287AQ32/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQ32", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ32" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQ32", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ32" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural molecule activity", "id": "GO:0005198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005198", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQ32", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ32" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AQ32-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 100, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AQ32-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AQ32" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 75 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 70, "end_pos": 72 }, { "start_pos": 82, "end_pos": 84 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AQ40-1", "uniprot_ac": "A0A287AQ40", "uniprot_id": "A0A287AQ40_PIG", "mass": { "chemical_mass": 63747.0, "monoisotopic_mass": 63747.0 }, "refseq": { "ac": "XP_020938667", "name": "E3 ubiquitin-protein ligase ZFP91 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938667" }, "gene_names": [ { "name": "ZFP91", "type": "recommended", "evidence": [ { "id": "A0A287AQ40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ40" } ] }, { "name": "ZFP91", "type": "synonym", "evidence": [ { "id": "XP_020938667", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938667" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase ZFP91", "type": "recommended", "evidence": [ { "id": "A0A287AQ40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ40/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "A0A287AQ40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ40/entry#names_and_taxonomy" } ] }, { "name": "E3 ubiquitin-protein ligase ZFP91 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020938667", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938667" } ] }, { "name": "RING-type E3 ubiquitin transferase ZFP91", "type": "synonym", "evidence": [ { "id": "A0A287AQ40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ40/entry#names_and_taxonomy" } ] }, { "name": "Zinc finger protein 91 homolog", "type": "synonym", "evidence": [ { "id": "A0A287AQ40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ40/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "DNA-binding transcription factor. Also acts as an atypical E3 ubiquitin-protein ligase that mediates 'Lys-63'-linked ubiquitination of MAP3K14/NIK, leading to stabilize and activate MAP3K14/NIK. It thereby acts as an activator of the non-canonical NF-kappa-B2/NFKB2 pathway. May also play an important role in cell proliferation and/or anti-apoptosis.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCG4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCG4#function" }, { "database": "UniProtKB", "id": "ARBA00094191", "url": "https://www.uniprot.org/uniprotkb/ARBA00094191#function" }, { "database": "UniProtKB", "id": "F1RMF1", "url": "https://www.uniprot.org/uniprotkb/F1RMF1#function" }, { "database": "UniProtKB", "id": "A0A287AQ40", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ40#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AQ40", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ40" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZFP91", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ40", "locus": { "chromosome": "2", "start_pos": 12495558, "end_pos": 12531633, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013155", "url": "https://www.ensembl.org/id/ENSSSCG00000013155" } ] } } ], "crossref": [ { "id": "A0A287AQ40", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AQ40", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013155", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013155", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525558", "url": "https://www.ncbi.nlm.nih.gov/gene/100525558", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46179", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46179", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46179:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46179:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020938667", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938667", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AQ40", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQ40-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCG4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMF1", "url": "https://www.uniprot.org/uniprotkb/F1RMF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMF1-1", "url": "https://www.uniprot.org/uniprotkb/F1RMF1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGETEEPRPPEQQDQEGGEAAAAAKAAPEEPQQQPPEEAAVAAPAGTTTSRVLRGGRDRGRAAAAAAAAAAAAVSRRRKAEYPRRRRSSPSARPPDAPGQQSQAAKPPSPAQGKKSPRLLCTEKVSTSKDPKEEKEEDDSALPQEASIAATRPSRGWRSSSRTSVSRHRDTENTRSSRSKTGSLQLICKSEPNTDQLDYDVAEEHQSPGGISDEEEEEEEEMLISEEEIPFKDDPRDETYKPHLERETPKPRRKSGKVKEEKEKKEIKVEVEVEVKEEENEIREDEEPPRKRGRRRKDDKSPRLPKRRKKPPIQYVRCEMEGCGTVLAHPRYLQHHIKYQHLLKKKYVCPHPSCGRLFRLQKQLLRHAKHHTDQRDYICEYCARAFKSSHNLAVHRMIHTGEKPLQCEICGFTCRQKASLNWHMKKHDADSFYQFSCNICGKKFEKKDSVVAHKAKSHPEVLIAEALAANAGALITSTDILGTNPESLTQPADGQGLPLLPEPLGNSTSGECLLLEAEGMSKSYCSGTERVSLMADGKLFVGSGSSGGTEGLVMNSDILGATTEVLIEDSDSTGP", "length": 576, "header": "tr|A0A287AQ40-1|A0A287AQ40_PIG Isoform 1 of E3 ubiquitin-protein ligase ZFP91 OS=Sus scrofa OX=9823 GN=ZFP91 PE=1 SV=2 CANONICAL=A0A287AQ40-1" }, "isoforms": [ { "isoform_ac": "A0A287AQ40-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ40/entry#A0A287AQ40-1", "sequence": { "sequence": "MPGETEEPRPPEQQDQEGGEAAAAAKAAPEEPQQQPPEEAAVAAPAGTTTSRVLRGGRDRGRAAAAAAAAAAAAVSRRRKAEYPRRRRSSPSARPPDAPGQQSQAAKPPSPAQGKKSPRLLCTEKVSTSKDPKEEKEEDDSALPQEASIAATRPSRGWRSSSRTSVSRHRDTENTRSSRSKTGSLQLICKSEPNTDQLDYDVAEEHQSPGGISDEEEEEEEEMLISEEEIPFKDDPRDETYKPHLERETPKPRRKSGKVKEEKEKKEIKVEVEVEVKEEENEIREDEEPPRKRGRRRKDDKSPRLPKRRKKPPIQYVRCEMEGCGTVLAHPRYLQHHIKYQHLLKKKYVCPHPSCGRLFRLQKQLLRHAKHHTDQRDYICEYCARAFKSSHNLAVHRMIHTGEKPLQCEICGFTCRQKASLNWHMKKHDADSFYQFSCNICGKKFEKKDSVVAHKAKSHPEVLIAEALAANAGALITSTDILGTNPESLTQPADGQGLPLLPEPLGNSTSGECLLLEAEGMSKSYCSGTERVSLMADGKLFVGSGSSGGTEGLVMNSDILGATTEVLIEDSDSTGP", "length": 576, "header": "tr|A0A287AQ40-1|A0A287AQ40_PIG Isoform 1 of E3 ubiquitin-protein ligase ZFP91 OS=Sus scrofa OX=9823 GN=ZFP91 PE=1 SV=2 CANONICAL=A0A287AQ40-1" }, "locus": { "chromosome": "2", "start_pos": 12531476, "end_pos": 12500137, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050881.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050881.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046157.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046157.2" } ] } }, { "isoform_ac": "A0A8W4FCG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ40/entry#A0A8W4FCG4-1", "sequence": { "sequence": "MPGETEEPRPPEQQDQEGGEAAAAAKAAPEEPQQQPPEEAAVAAPAGTTTSRVLRGGRDRGRAAAAAAAAAAAAVSRRRKAEYPRRRRSSPSARPPDAPGQQSQAAKPPSPAQGKKSPRLLCTEKVSTSKDPKEEKEEDDSALPQEASIAATRPSRGWRSSSRTSVSRHRDTENTRSSRSKTGSLQLICKSEPNTDQLDYDVAEEHQSPGGISDEEEEEEEEMLISEEEIPFKDDPRDETYKPHLERETPKPRRKSGKVKEEKEKKEIKVEVEVEVKEEENEIREDEEPPRKKKPPIQYVRCEMEGCGTVLAHPRYLQHHIKYQHLLKKKYVCPHPSCGRLFRLQKQLLRHAKHHTDQRDYICEYCARAFKSSHNLAVHRMIHTGEKPLQCEICGFTCRQKASLNWHMKKHDADSFYQFSCNICGKKFEKKDSVVAHKAKSHPEVLIAEALAANAGALITSTDILGTNPESLTQPADGQGLPLLPEPLGNSTSGECLLLEAEGMSKSYCSGTERVSLMADGKLFVGSGSSGGTEGLVMNSDILGATTEVLIEDSDSTGP", "length": 559, "header": "tr|A0A8W4FCG4-1|A0A287AQ40_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase ZFP91 OS=Sus scrofa OX=9823 GN=ZFP91 PE=1 SV=1 CANONICAL=A0A287AQ40-1" }, "locus": { "chromosome": "2", "start_pos": 12531476, "end_pos": 12500137, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103334.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103334.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075993.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075993.1" } ] } }, { "isoform_ac": "F1RMF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ40/entry#F1RMF1-1", "sequence": { "sequence": 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"Ensembl Gene", "id": "ENSSSCG00000034821", "url": "https://www.ensembl.org/id/ENSSSCG00000034821" } ] } } ], "crossref": [ { "id": "ENSSSCG00000034821", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034821", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110257665", "url": "https://www.ncbi.nlm.nih.gov/gene/110257665", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006911", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006911", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110257665", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257665", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AQ97", "url": "https://www.orthodb.org/?gene=A0A287AQ97", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47081", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47081", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47081:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47081:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04826", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04826", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020935471", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935471", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AQ97", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQ97-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRVQEVGWVTAGLMIWAGTCYYIYRLTKGRAQGVRRLARNGPRVKMENMVGIQNQTVAMCEAMAGTKIETRPKPNTGAETGAGGRAGAEVETKDTAKARTQANSQAKAMAEAETETQSEATTMAETVVMTEAVTLTEAEAYDVAMKEAVTQTDSEAGRLVKKEAVTQTKAKAWALVARAETKKEAMTQTKAETRILAEKEKEVNRVMVTQNEALAVTGEVAMMGAINKIGIVAETKARAWEETVSVAKTQSEARSGTTVDAKGNPNTMAKAETGTDMKSCALSQVVAENQVDNVLGTGVEAKGNYNTMHQAGSATDMRASVQPQIVTKAQTEAMRGAMADVGSNANVMYKAGVGADMNISIQSQTVIQRQAETMSGARVDDRGNINVIYRAMTGADMWASAQLQAVASAQAEAMLDARVMGRVNPNSISKVGFGIDIESYTQHQPTATVQADALLDDKIKAQGNANTKSKEEAGTDTKAQSQISTKSYAEALPSTRGKSRGKAKGKCKAGVGTDVKTCVQPQGGAKTQVDVLPDSRVDGRGDPDAMSMVEAKAEPRAGGQPQDMAGSQGEAMPGAKNKVQDYLNTISKSGAGLHTKSSAQPQAMTNTQGEALAGVKNKVRGNPNAVSKAGTGPDTKFDSAQLQADTIGSPQPQGVASFQGEVSPGTKNKVRGNPNAVSKVWTGTDTKSSAQPQAMANFQGEALPSVKNKVRGNPNAVSKAGTGPDTKFDSAQPQVDTIVSAQTQAVVNFQGEASSGTKNKVRGNLSAVSKVWTGSDTKGSAQPRTDTTGSAQPQAVACSWGESLPATKNKVRGNPSAMSKVGSGPDTTCSAQPQTDTTNSAQPQAVANSQGEVLLGAKSKVRGNPNDVSKAESGTDIMGSARSQAEALSGARNKVRGNLSAVSKVGLGSDTKSSAHPQSAATSQGEALCGIKNKVRGNPSAVSKAGSRPDTKGSAHPQAVANSQGEALSGTKNKVRGNSNAVSKAGTGSDTIDPAQPPTDKTSSAQPQAVACSQGEVLLGARSKVRGNPNAVSKAGIGADSIGSAPSQAVASSHGEALLGARSKVRGNRVAESKAEAGAALMGSGQRQSVTHSQSKSGAKDKTIHKSEAEATGDVSVKPKAKATPTSESEDGADTQACRKSQPKVHDYYWSGIGVEDWIASERWIKFRFQARDGYWENSMSWADDENETSVESWSGARSENEVGIQSWAGVGDQASGGLWAGSHASQQSWAGGQASGGYWVETGDKAVGGSWTVAENQASGGSWAGTGNQAVGVPWAGAQASESSWAGGQTSGVSWAGGEAIGVSWTVVENQANGVSWAGAQEQASGRSQDGTGIQANAGPWAQATTGNVVNIGYWAVAVDQATGGSWILTSDLSGGASWVGTSDLSGAISKPRLQDQAHESVSWAGAGLGPEGQSSGRIWAGTTDQASGGSRLGPVDQSSSGSWVMAGEQASEGSRPGFADQSSVGSWAGTGNQASEGFLVGAVDQASGGSWTGTVDQSGGGAKPRFEDQVSEEGSLASAGGQAGGGSRSQPEDQSSGGSWADSGDQASRGFLVGAVDQANEVSWAEPGHQAGGEAKLRSEDQAKSGNVSWADSGGQVSGGSTLVPRDQSVGDSWAGIGDQASGGPRPVPEAQSTGWYYAYSGNHASVGGSWAGAGGQVIGGLGLGLMNPSSGGSWAVTGNQVSGASWAGAVGQAVSCSKPGFEDQASAGAFWSGAEDQATGGSSPTSADQSDQSSGGSWAGSGSQTSGQSWVVAGDQASSCSKPGFEDQASAGAFWSGTEDQATGGYSPASADQSDQPSGGSWAGGGSQANGQSWVVAGDQAGSCSKPGFEDQASGGAFWSGVEDQATGGSSPGSADQPSGGSWAGGGSQASGQSWVVAGDQAGSCSKPGFEDQASAGAFWSGAVDQATGGSSPGSADQPSGGSWAGGGSQASGQSWVVAGDQAGSCSKPGFEDQASAGAFWSGAEDQATGGSSPGSADQPSGGSWAGGGSQASGQSWVVAGDQAGSCSKPGFEDQASAGAFWSGAVDQATGGSSPGSADQPSGGSWAGGGSQASGQSWVVAGDQAGSCSKPGFEDQASGGGSWTGSGDQAGRKSWAGSRPGKEASRGSSLGPDEQASGGSWARARDQTSGRSQVSARMEANEGSWLGAGSEASTGSWFWRGEESGIVSSPGGKNEASIESNSGVGEEAVISSRFRAENKANIGCWIRSNEATCMDSCLGAESGTEVRQESWLWDGDAATTGSRLGAGEEADMGSWTLAEDVDEDEVSRASSPDIEEISLRSLFWAESENSNEFRSNREKNVNFQQGAENKTSTKDKLEAAGGVDVKSCFWDSNENKSEEKYVPKTKAKKSAESRVTYPSMVPGAGMGSWAGAMIWTEMKFPYQNESCFPPEDELRKQIRSGEKIQPWACRCKRETNMDPQELEKLICMIEMTEDPSIHEIANNALYNSPDYPFSHEVIRNAGRISIIEGLLNNPYPSVRQKALNALNNISVAAENHRKVKTYLNQVCEDTITYPLNSNVQLAGLRLIKHLTIISEYQHMVTNYISEFLRLLTVGSGETKDHILGMLLNFSKNPSMTKDLLIANAPASLINIFSKKETKENILNALSLFENINYHFKRRAKVFTQDKFSKNSLYFVFQRPKACAKKLRVLAAEYNDPEVKERVELLLSKL", "length": 2673, "header": "tr|A0A287AQ97-1|A0A287AQ97_PIG Isoform 1 of Armadillo repeat containing X-linked 4 OS=Sus scrofa OX=9823 GN=ARMCX4 PE=4 SV=1 CANONICAL=A0A287AQ97-1" }, "isoforms": [ { "isoform_ac": "A0A287AQ97-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ97/entry#A0A287AQ97-1", "sequence": { "sequence": "MGRVQEVGWVTAGLMIWAGTCYYIYRLTKGRAQGVRRLARNGPRVKMENMVGIQNQTVAMCEAMAGTKIETRPKPNTGAETGAGGRAGAEVETKDTAKARTQANSQAKAMAEAETETQSEATTMAETVVMTEAVTLTEAEAYDVAMKEAVTQTDSEAGRLVKKEAVTQTKAKAWALVARAETKKEAMTQTKAETRILAEKEKEVNRVMVTQNEALAVTGEVAMMGAINKIGIVAETKARAWEETVSVAKTQSEARSGTTVDAKGNPNTMAKAETGTDMKSCALSQVVAENQVDNVLGTGVEAKGNYNTMHQAGSATDMRASVQPQIVTKAQTEAMRGAMADVGSNANVMYKAGVGADMNISIQSQTVIQRQAETMSGARVDDRGNINVIYRAMTGADMWASAQLQAVASAQAEAMLDARVMGRVNPNSISKVGFGIDIESYTQHQPTATVQADALLDDKIKAQGNANTKSKEEAGTDTKAQSQISTKSYAEALPSTRGKSRGKAKGKCKAGVGTDVKTCVQPQGGAKTQVDVLPDSRVDGRGDPDAMSMVEAKAEPRAGGQPQDMAGSQGEAMPGAKNKVQDYLNTISKSGAGLHTKSSAQPQAMTNTQGEALAGVKNKVRGNPNAVSKAGTGPDTKFDSAQLQADTIGSPQPQGVASFQGEVSPGTKNKVRGNPNAVSKVWTGTDTKSSAQPQAMANFQGEALPSVKNKVRGNPNAVSKAGTGPDTKFDSAQPQVDTIVSAQTQAVVNFQGEASSGTKNKVRGNLSAVSKVWTGSDTKGSAQPRTDTTGSAQPQAVACSWGESLPATKNKVRGNPSAMSKVGSGPDTTCSAQPQTDTTNSAQPQAVANSQGEVLLGAKSKVRGNPNDVSKAESGTDIMGSARSQAEALSGARNKVRGNLSAVSKVGLGSDTKSSAHPQSAATSQGEALCGIKNKVRGNPSAVSKAGSRPDTKGSAHPQAVANSQGEALSGTKNKVRGNSNAVSKAGTGSDTIDPAQPPTDKTSSAQPQAVACSQGEVLLGARSKVRGNPNAVSKAGIGADSIGSAPSQAVASSHGEALLGARSKVRGNRVAESKAEAGAALMGSGQRQSVTHSQSKSGAKDKTIHKSEAEATGDVSVKPKAKATPTSESEDGADTQACRKSQPKVHDYYWSGIGVEDWIASERWIKFRFQARDGYWENSMSWADDENETSVESWSGARSENEVGIQSWAGVGDQASGGLWAGSHASQQSWAGGQASGGYWVETGDKAVGGSWTVAENQASGGSWAGTGNQAVGVPWAGAQASESSWAGGQTSGVSWAGGEAIGVSWTVVENQANGVSWAGAQEQASGRSQDGTGIQANAGPWAQATTGNVVNIGYWAVAVDQATGGSWILTSDLSGGASWVGTSDLSGAISKPRLQDQAHESVSWAGAGLGPEGQSSGRIWAGTTDQASGGSRLGPVDQSSSGSWVMAGEQASEGSRPGFADQSSVGSWAGTGNQASEGFLVGAVDQASGGSWTGTVDQSGGGAKPRFEDQVSEEGSLASAGGQAGGGSRSQPEDQSSGGSWADSGDQASRGFLVGAVDQANEVSWAEPGHQAGGEAKLRSEDQAKSGNVSWADSGGQVSGGSTLVPRDQSVGDSWAGIGDQASGGPRPVPEAQSTGWYYAYSGNHASVGGSWAGAGGQVIGGLGLGLMNPSSGGSWAVTGNQVSGASWAGAVGQAVSCSKPGFEDQASAGAFWSGAEDQATGGSSPTSADQSDQSSGGSWAGSGSQTSGQSWVVAGDQASSCSKPGFEDQASAGAFWSGTEDQATGGYSPASADQSDQPSGGSWAGGGSQANGQSWVVAGDQAGSCSKPGFEDQASGGAFWSGVEDQATGGSSPGSADQPSGGSWAGGGSQASGQSWVVAGDQAGSCSKPGFEDQASAGAFWSGAVDQATGGSSPGSADQPSGGSWAGGGSQASGQSWVVAGDQAGSCSKPGFEDQASAGAFWSGAEDQATGGSSPGSADQPSGGSWAGGGSQASGQSWVVAGDQAGSCSKPGFEDQASAGAFWSGAVDQATGGSSPGSADQPSGGSWAGGGSQASGQSWVVAGDQAGSCSKPGFEDQASGGGSWTGSGDQAGRKSWAGSRPGKEASRGSSLGPDEQASGGSWARARDQTSGRSQVSARMEANEGSWLGAGSEASTGSWFWRGEESGIVSSPGGKNEASIESNSGVGEEAVISSRFRAENKANIGCWIRSNEATCMDSCLGAESGTEVRQESWLWDGDAATTGSRLGAGEEADMGSWTLAEDVDEDEVSRASSPDIEEISLRSLFWAESENSNEFRSNREKNVNFQQGAENKTSTKDKLEAAGGVDVKSCFWDSNENKSEEKYVPKTKAKKSAESRVTYPSMVPGAGMGSWAGAMIWTEMKFPYQNESCFPPEDELRKQIRSGEKIQPWACRCKRETNMDPQELEKLICMIEMTEDPSIHEIANNALYNSPDYPFSHEVIRNAGRISIIEGLLNNPYPSVRQKALNALNNISVAAENHRKVKTYLNQVCEDTITYPLNSNVQLAGLRLIKHLTIISEYQHMVTNYISEFLRLLTVGSGETKDHILGMLLNFSKNPSMTKDLLIANAPASLINIFSKKETKENILNALSLFENINYHFKRRAKVFTQDKFSKNSLYFVFQRPKACAKKLRVLAAEYNDPEVKERVELLLSKL", "length": 2673, "header": "tr|A0A287AQ97-1|A0A287AQ97_PIG Isoform 1 of Armadillo repeat containing X-linked 4 OS=Sus scrofa OX=9823 GN=ARMCX4 PE=4 SV=1 CANONICAL=A0A287AQ97-1" }, "locus": { "chromosome": "X", "start_pos": 83103494, "end_pos": 83095476, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042908.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042908.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046053.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046053.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1729, "start_aa": "Thr", "end_pos": 1729, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1729", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQ97", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ97" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110257665", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257665", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1188, "end_pos": 1190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1590, "end_pos": 1592, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2313, "end_pos": 2315, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2339, "end_pos": 2341, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2388, "end_pos": 2390, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2492, "end_pos": 2494, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2572, "end_pos": 2574, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" }, { "start_pos": 765, "end_pos": 767, "annotation": "n_glycosylation_sequon" }, { "start_pos": 899, "end_pos": 901, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AQ97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ97" }, { "id": "PF04826", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04826" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Armadillo repeat-containing", "eco_id": "ECO_0000259", "start_pos": 2422, "end_pos": 2641, "start_aa": "Asp", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1729 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1188, "end_pos": 1190 }, { "start_pos": 1590, "end_pos": 1592 }, { "start_pos": 2313, "end_pos": 2315 }, { "start_pos": 2339, "end_pos": 2341 }, { "start_pos": 2388, "end_pos": 2390 }, { "start_pos": 2492, "end_pos": 2494 }, { "start_pos": 2572, "end_pos": 2574 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 55, "end_pos": 57 }, { "start_pos": 765, "end_pos": 767 }, { "start_pos": 899, "end_pos": 901 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, 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"GLLSLRYLDLSCNKIQSIERRTFESLPFLQYVNLGCNLITEVSFGTFQAWHGMQFLHKLVLSRNPLTTVEDSYLYKLPALRYLTPFGTALWWLWPASPTYSNNSSTTDLILCISIYRILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNSLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVRTTIHSDSEPGRCRLNISLSVLPRQGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGDPALP", "length": 778, "header": "tr|A0A287AQJ6-1|A0A287AQJ6_PIG Isoform 1 of LRRC37A/B like protein 1 C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255209 PE=4 SV=3 CANONICAL=A0A287AQJ6-1" }, "isoforms": [ { "isoform_ac": "A0A287AQJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQJ6/entry#A0A287AQJ6-1", "sequence": { "sequence": "GLLSLRYLDLSCNKIQSIERRTFESLPFLQYVNLGCNLITEVSFGTFQAWHGMQFLHKLVLSRNPLTTVEDSYLYKLPALRYLTPFGTALWWLWPASPTYSNNSSTTDLILCISIYRILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNSLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVRTTIHSDSEPGRCRLNISLSVLPRQGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGDPALP", "length": 778, "header": "tr|A0A287AQJ6-1|A0A287AQJ6_PIG Isoform 1 of LRRC37A/B like protein 1 C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255209 PE=4 SV=3 CANONICAL=A0A287AQJ6-1" }, "locus": { "chromosome": "12", "start_pos": 26562720, "end_pos": 26536260, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042709.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042709.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046232.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046232.3" } ] } }, { "isoform_ac": "A0A287ARC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQJ6/entry#A0A287ARC9-1", "sequence": { "sequence": "PGPRTSTCLWVRILRDNALTELHKDSFEGLLSLRYLVLSRNPLTTVEDSYLYKLPALRYLDLGTTQVSLTTVESILMMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNSLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVRTTIHSDSEPAN", "length": 683, "header": "tr|A0A287ARC9-1|A0A287ARC9_PIG Computationally mapped isoform of LRRC37A/B like protein 1 C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255209 PE=4 SV=2 CANONICAL=A0A287AQJ6-1" }, "locus": { "chromosome": "12", "start_pos": 26563359, "end_pos": 26538575, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042591.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042591.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046624.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046624.3" } ] } }, { "isoform_ac": "A0A5G2QVZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQJ6/entry#A0A5G2QVZ3-1", "sequence": { "sequence": "MQFLHKLVLSRNPLTTVEDSYLYKLPALRYLDLGTTQVSLTTVESILMMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNSLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVRTTIHSDSEPAN", "length": 654, "header": "tr|A0A5G2QVZ3-1|A0A287AQJ6_PIG Computationally mapped isoform of LRRC37A/B like protein 1 C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255209 PE=4 SV=2 CANONICAL=A0A287AQJ6-1" }, "locus": { "chromosome": "12", "start_pos": 26558304, "end_pos": 26538575, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076727.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076727.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066098.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066098.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 516, "start_aa": "Thr", "end_pos": 516, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr516", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVZ3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 719, "end_pos": 721, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AQJ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 778, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AQJ6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AQJ6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AQJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQJ6" }, { "id": "PF14914", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14914" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRC37A/B like protein 1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 568, "end_pos": 706, "start_aa": "Ser", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 516 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 103, "end_pos": 105 }, { "start_pos": 151, "end_pos": 153 }, { "start_pos": 178, "end_pos": 180 }, { "start_pos": 719, "end_pos": 721 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AQK9-1", "uniprot_ac": "A0A287AQK9", "uniprot_id": "A0A287AQK9_PIG", "mass": { "chemical_mass": 41000.0, "monoisotopic_mass": 41000.0 }, "refseq": { "ac": "XP_020921512", "name": "G-protein coupled receptor 183-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921512" }, "gene_names": [ { "name": "LOC110255849", "type": "recommended", "evidence": [ { "id": "A0A287AQK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK9" } ] }, { "name": "LOC110255849", "type": "synonym", "evidence": [ { "id": "XP_020921512", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921512" } ] } ], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287AQK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK9/entry#names_and_taxonomy" } ] }, { "name": "G-protein coupled receptor 183-like", "type": "synonym", "evidence": [ { "id": "XP_020921512", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921512" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AQK9", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110255849", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK9", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000031278", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031278", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110255849", "url": "https://www.ncbi.nlm.nih.gov/gene/110255849", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255849", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255849", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CLQLTVC", "url": "https://omabrowser.org/oma/group/CLQLTVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AQK9", "url": "https://www.orthodb.org/?gene=A0A287AQK9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24237", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24237", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24237:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24237:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020921512", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921512", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AQK9", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVLGDKPLTGAHLGLHNHSWDLYAPASSTADPLVHQANSCLSHHPPRAVSVALSLFYAALLVFSALGNILALCLAYQKGKKINSTGIYLVHLAVSDLLFTLALPGKIVYYMLDFSWPFGGAFCRLTALILYLNTYSGIYLMTCVSVDRSLAVARARPCPRPREPGRARLACVAVWALASLQTAPLLLIPMSKRVAGRLTCMEFESVEPVLGLPVLVLGTSAVSFCGPAGILLFCYLKVTLKLCRTAQDSPLTSGKRHYRRACLLTLVVLVAVAVCFVPYHLNVIQFMVRKLLRRPTCPEQRAFKLCLQLTVCIMNLNCGIDPVIYSFASTRYRKRLLGILKLKASASSSSPSLGKNSSETGSVNQTGGSAPLEENEV", "length": 378, "header": "tr|A0A287AQK9-1|A0A287AQK9_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255849 PE=3 SV=1 CANONICAL=A0A287AQK9-1" }, "isoforms": [ { "isoform_ac": "A0A287AQK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQK9/entry#A0A287AQK9-1", "sequence": { "sequence": 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQL1/entry#names_and_taxonomy" } ] }, { "name": "probable G-protein coupled receptor 27", "type": "synonym", "evidence": [ { "id": "XP_020926511", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926511" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AQL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQL1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GPR27", "url": "https://www.uniprot.org/uniprotkb/A0A287AQL1", "locus": { "chromosome": "13", "start_pos": 53153192, "end_pos": 53152062, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036580", "url": "https://www.ensembl.org/id/ENSSSCG00000036580" } ] } } ], "crossref": [ { "id": "A0A287AQL1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AQL1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036580", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036580", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15216", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15216", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110256466", "url": "https://www.ncbi.nlm.nih.gov/gene/110256466", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051509", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051509", "database": "InterPro", 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"XP_020926511", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926511", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AQL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQL1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANASEPGSGGGEAAALGLKLATLSLLLCVSLAGNVLFALLIVRERSLHRAPYYLLLDLCLADGLRALACLPAVMLAARRAAAAAGAPPGALGCKLLAFLAALFCFHAAFLLLGVGVTRYLAIAHHRFYAERLAGWPCAAMLVCAAWALALAAAFPPVLDGGGGGEDEDAPCALEQRPDGAPGALGFLLLLAVVVGATHLVYLRLLFFIHDRRKMRPARLVPAVSHDWTFHGPGATGQAAANWTAGFGRGPTPPALVGIRPAGPGRGARRLLVLEEFKTEKRLCKMFYAVTLLFLLLWGPYVVASYLRVLVRPGAVPQAYLTASVWLTFAQAGINPVVCFLFNRELRDCFRAQFPCCQSPQATQATLPCDLKGIGL", "length": 376, "header": "tr|A0A287AQL1-1|A0A287AQL1_PIG Isoform 1 of G protein-coupled receptor 27 OS=Sus scrofa OX=9823 GN=GPR27 PE=4 SV=1 CANONICAL=A0A287AQL1-1" }, "isoforms": [ { "isoform_ac": "A0A287AQL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQL1/entry#A0A287AQL1-1", "sequence": { "sequence": "MANASEPGSGGGEAAALGLKLATLSLLLCVSLAGNVLFALLIVRERSLHRAPYYLLLDLCLADGLRALACLPAVMLAARRAAAAAGAPPGALGCKLLAFLAALFCFHAAFLLLGVGVTRYLAIAHHRFYAERLAGWPCAAMLVCAAWALALAAAFPPVLDGGGGGEDEDAPCALEQRPDGAPGALGFLLLLAVVVGATHLVYLRLLFFIHDRRKMRPARLVPAVSHDWTFHGPGATGQAAANWTAGFGRGPTPPALVGIRPAGPGRGARRLLVLEEFKTEKRLCKMFYAVTLLFLLLWGPYVVASYLRVLVRPGAVPQAYLTASVWLTFAQAGINPVVCFLFNRELRDCFRAQFPCCQSPQATQATLPCDLKGIGL", "length": 376, "header": "tr|A0A287AQL1-1|A0A287AQL1_PIG Isoform 1 of G protein-coupled receptor 27 OS=Sus scrofa OX=9823 GN=GPR27 PE=4 SV=1 CANONICAL=A0A287AQL1-1" }, "locus": { "chromosome": "13", "start_pos": 53153189, "end_pos": 53152062, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051312.1", "url": "https://www.ensembl.org/id/ENSSSCT00000051312.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046333.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046333.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 252, "start_aa": "Thr", "end_pos": 252, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr252", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQL1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110256466", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256466", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9SYV2-1", "protein_name": "G protein-coupled receptor 27", "gene_name": "GPR27", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MANASEPGSGGGGGGGEAAALGLKLATLSLLLCVSLAGNVLFALLIVRERSLHRAPYYLLLDLCLADGLRALACLPAVMLAARRAAAAAGAPPGALGCKLLAFLAALFCFHAAFLLLGVGVTRYLAIAHHRFYAERLAGWPCAAMLVCAAWALALAAAFPPVLDGGGGDDEDAPCALEQRPDGAPGALGFLLLLAVVVGATHLVYLRLLFFIHDRRKMRPARLVPAVSHDWTFHGPGATGQAAANWTAGFGRGPTPPALVGIRPAGPGRGARRLLVLEEFKTEKRLCKMFYAVTLLFLLLWGPYVVASYLRVLVRPGAVPQAYLTASVWLTFAQAGINPVVCFLFNRELRDCFRAQFPCCQSPQATQATLPCDLKGIGL", "length": 379 }, "evidence": [ { "id": "A0A287AQL1", "url": "https://omabrowser.org/oma/group/A0A287AQL1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O54897-1", "protein_name": "Probable G protein-coupled receptor 27", "gene_name": "Gpr27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANASEPGGGGSGGGAEAAALGLRLATLSLLLCVSLAGNVLFALLIVRERSLHRAPYYLLLDLCLADGLRALACLPAVMLAARRAAAAAGTPPGALGCKLLAFLAALFCFHAAFLLLGVGVTRYLAIAHHRFYAERLAGWPCAAMLVCAAWALALAAAFPPVLDGGGADDEDAPCALEQRPDGAPGALGFLLLLAAVVGATHLVYLRLLFFIHDRRKMRPARLVPAVSHDWTFHGPGATGQAAANWTAGFGRGPTPPALVGIRPAGPGRGARRLLVLEEFKTEKRLCKMFYAITLLFLLLWGPYVVASYLRVLVRPGAVPQAYLTASVWLTFAQAGINPVVCFLFNRELRDCFRAQFPCCQSPQATQATLPCDLKGIGL", "length": 379 }, "evidence": [ { "id": "A0A287AQL1", "url": "https://omabrowser.org/oma/group/A0A287AQL1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJH3-1", "protein_name": "Probable G protein-coupled receptor 27", "gene_name": "Gpr27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANASEPGGGGGGAEAAALGLRLATLSLLLCVSLAGNVLFALLIVRERSLHRAPYYLLLDLCLADGLRALACLPAVMLAARRAAAAAGTPPGALGCKLLAFLAALFCFHAAFLLLGVGVTRYLAIAHHRFYAERLAGWPCAAMLVCAAWALALAAAFPPVLDGGGADDEDAPCALEQRPDGAPGALGFLLLLAAVVGATHLVYLRLLFFIHDRRKMRPARLVPAVSHDWTFHGPGATGQAAANWTAGFGRGPTPPALVGIRPAGPGRGARRLLVLEEFKTEKRLCKMFYAITLLFLLLWGPYVVASYLRVLVRPGAVPQAYLTASVWLTFAQAGINPVVCFLFNRELRDCFRAQFPCCQSPQATQATLPCDLKGIGL", "length": 377 }, "evidence": [ { "id": "A0A287AQL1", "url": "https://omabrowser.org/oma/group/A0A287AQL1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9NS67-1", "protein_name": "Probable G protein-coupled receptor 27", "gene_name": "GPR27", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MANASEPGGSGGGEAAALGLKLATLSLLLCVSLAGNVLFALLIVRERSLHRAPYYLLLDLCLADGLRALACLPAVMLAARRAAAAAGAPPGALGCKLLAFLAALFCFHAAFLLLGVGVTRYLAIAHHRFYAERLAGWPCAAMLVCAAWALALAAAFPPVLDGGGDDEDAPCALEQRPDGAPGALGFLLLLAVVVGATHLVYLRLLFFIHDRRKMRPARLVPAVSHDWTFHGPGATGQAAANWTAGFGRGPTPPALVGIRPAGPGRGARRLLVLEEFKTEKRLCKMFYAVTLLFLLLWGPYVVASYLRVLVRPGAVPQAYLTASVWLTFAQAGINPVVCFLFNRELRDCFRAQFPCCQSPRTTQATHPCDLKGIGL", "length": 375 }, "evidence": [ { "id": "A0A287AQL1", "url": "https://omabrowser.org/oma/group/A0A287AQL1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQL1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQL1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AQL1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 376, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AQL1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AQL1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AQL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQL1" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 339, "start_aa": "Gly", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 252 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 242, "end_pos": 244 }, { "start_pos": 3, "end_pos": 5 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ALY3-1", "uniprot_ac": "A0A287ALY3", "uniprot_id": "A0A287ALY3_PIG", "mass": { "chemical_mass": 128714.0, "monoisotopic_mass": 128714.0 }, "refseq": {}, "gene_names": [ { "name": "SEC31B", "type": "recommended", "evidence": [ { "id": "A0A287ALY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3" } ] } ], "protein_names": [ { "name": "Protein transport protein Sec31A", "type": "recommended", "evidence": [ { "id": "A0A287ALY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3/entry#names_and_taxonomy" } ] }, { "name": "SEC31-like protein 1", "type": "synonym", "evidence": [ { "id": "A0A287ALY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3/entry#names_and_taxonomy" } ] }, { "name": "SEC31-related protein A", "type": "synonym", "evidence": [ { "id": "A0A287ALY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AE12", "url": "https://www.uniprot.org/uniprotkb/A0A287AE12#function" }, { "database": "UniProtKB", "id": "ARBA00025471", "url": "https://www.uniprot.org/uniprotkb/ARBA00025471#function" }, { "database": "UniProtKB", "id": "A0A287ALY3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3#function" }, { "database": "UniProtKB", "id": "A0A5G2Q7T1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7T1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ALY3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SEC31B", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3", "locus": { "chromosome": "14", "start_pos": 111588091, "end_pos": 111624073, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006165", "url": "https://www.ensembl.org/id/ENSSSCG00000006165" } ] } } ], "crossref": [ { "id": "A0A287ALY3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ALY3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006165", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006165", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13923", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13923", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13923:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13923:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AE12", "url": "https://www.uniprot.org/uniprotkb/A0A287AE12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AE12-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AE12-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALY3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7T1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7T1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7T1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R798", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R798", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R798-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R798-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWL8", "url": "https://www.uniprot.org/uniprotkb/F1RWL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWL8-1", "url": "https://www.uniprot.org/uniprotkb/F1RWL8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLKELERPAVQVWSPASQYPVYLATGTSAQQLDASFSTNGTLEIFEVDFRDPSLDLKRKGILSASSRFHKLIWGSFGNGLLEGSGVIAGGGDNGMLTLYNVTHILSSGKEPVIAQRQKHTGAVRALDFNPFQGNLLASGANDSEIFIWDLNNLSVPMTPGSKSQPQQPLEDIKALSWNRQVQHILSSAHPSGKAVVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDIATQLVLCSEDDRLPVIQLWDLRFASSPLKVLESHSRGILSVSWSQADAELLLSSAKDSQILCWNLGSSEVVYKLPTQSSWCFDVQWCPRDPPVFSAASFDGWISLYSVMGRNWEVQQMRQADKISSSFSKGQPLPPLQVPEQVVQASLIPPLKKPPKWMRRPAGVSFAFGGKLVTFGLLSTTAHQVPQPCLHLVFISQVTTEPEFLTRSAELQEALGSGNVLNYCQNKIQQVTLPSEKMLWQFLKVTLEKDSRMKFLKLLGYNKDELQKKVAMWLKSDLGLGESPQPKEDAPNSSRRQAFCSQTSEHSAEEASASSSFFDELVPQNITPWEIPITEDADGLLSQALLLGELGPAVELCLKEERFADAIILAQAGGADLLKQTQERYLAKKKTRIAPLLACVTQKSWRDMVCACSLKNWREALALLLTYSGPEKFPELCDMLGTRMEQEGSRALTSEARLCYVCSGSVERLVECWAKCHQASSPMALQDLMEKVMVLNKSLELLRGPDGVSPGPATTSRVTQYAHLLAAQGSLNAAMSYLPSDCAQPPIQQLRDRLFHAQGSGVLGQQSPPFPFPRVVVGAIPTSQETSSHRLGFQSSHQVPTPSVRPRISTPQSSLVMPSTSSHPVPYQGSRMKNTSDYRPPGFQESQPLPLGPGVRPASSQPRLLGRPRVQAPNPVRFPGTWPLPGPPPPMAPADIMPPGSASLPETPRLVPLLPVRTPGLGPMNSQPPAPPVSLPAAHPSGGPGAPCASAPPATDLLTPQPGPQDSLKNAPVPRGSLQRKKLPETFMPPAPITAPVMCLTPEPRGLLSSQPAVPSVSQAPSGAPGELGLQRLQQPPEKMDMKELPPEHESLKISFEALLQRCSLSATDLKTKRKLDEAAQRLECLYEKLRERTLSPPVLTGLHEVARCADTGSFEQGLAVHAQVVGYSSFSEVSSFMPALKSILTIALKLHV", "length": 1181, "header": "tr|A0A287ALY3-1|A0A287ALY3_PIG Isoform 1 of Protein transport protein Sec31A OS=Sus scrofa OX=9823 GN=SEC31B PE=1 SV=3 CANONICAL=A0A287ALY3-1" }, "isoforms": [ { "isoform_ac": "A0A287AE12-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3/entry#A0A287AE12-1", "sequence": { "sequence": "MTVFCLPTGQTMKLKELERPAVQVWSPASQYPVYLATGTSAQQLDASFSTNGTLEIFEVDFRDPSLDLKRKGILSASSRFHKLIWGSFGNGLLEGSGVIAGGGDNGMLTLYNVTHILSSGKEPVIAQRQKHTGAVRALDFNPFQGNLLASGANDSEIFIWDLNNLSVPMTPGSKSQPQQPLEDIKALSWNRQVQHILSSAHPSGKAVVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDIATQLVLCSEDDRLPVIQLWDLRFASSPLKVLESHSRGILSVSWSQADAELLLSSAKDSQILCWNLGSSEVVYKLPTQSSWCFDVQWCPRDPPVFSAASFDGWISLYSVMGRNWEVQQMRQADKISSSFSKGQPLPPLQVPEQVVQASLIPPLKKPPKWMRRPAGVSFAFGGKLVTFGLLSTTAHQVPQPCLHLVFISQVTTEPEFLTRSAELQEALGSGNVLNYCQNKIQQVTLPSEKMLWQFLKVTLEKDSRMKFLKLLGYNKDELQKKVAMWLKSDLGLGESPQPKEDAPNSSRRQAFCSQTSEHSAEEASASSSFFDELVPQNITPWEIPITEDADGLLSQALLLGELGPAVELCLKEERFADAIILAQAGGADLLKQTQERYLAKKKTRIAPLLACVTQKSWRDMVCACSLKNWREALALLLTYSGPEKFPELCDMLGTRMEQEGSRALTSEARLCYVCSGSVERLVECWAKCHQASSPMALQDLMEKVMVLNKSLELLRGPDGVSPGPATTSRVTQYAHLLAAQGSLNAAMSYLPSDCAQPPIQQLRDRLFHAQGSGVLGQQSPPFPFPRVVVGAIPTSQETSSHRLGFQSSHQVPTPSVRPRISTPQSSLVMPSTSSHPVPYQGSRMKNTSDYRPPGFQESQPLPLGPGVRPASSQPRLLGRPRVQAPNPVRFPGTWPLPGPPPPMAPADIMPPGSASLPETPRLVPLLPVRTPGLGPMNSQPPAPPVSLPAAHPSGGPGAPCASAPPATDLLTPQPGPQDSLKNAPVPRGSLQRKKLPETFMPPAPITAPVMCLTPEPRGLLSSQPAVPSVSQAPSGAPGELGLQRLQQPPEKMDMKELPPEHESLKISFEALLQRCSLSATDLKTKRKLDEAAQRLECLYEKLRERTLSPPVLTGLHEVARCADTGSFEQGLAVHAQVVGYSSFSEVSSFMPALKSILTIALKLHV", "length": 1192, "header": "tr|A0A287AE12-1|A0A287ALY3_PIG Computationally mapped isoform of Protein transport protein Sec31A OS=Sus scrofa OX=9823 GN=SEC31B PE=1 SV=3 CANONICAL=A0A287ALY3-1" }, "locus": { "chromosome": "14", "start_pos": 111621560, "end_pos": 111592774, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049998.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049998.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042127.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042127.3" } ] } }, { "isoform_ac": "A0A287ALY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3/entry#A0A287ALY3-1", "sequence": { "sequence": "MKLKELERPAVQVWSPASQYPVYLATGTSAQQLDASFSTNGTLEIFEVDFRDPSLDLKRKGILSASSRFHKLIWGSFGNGLLEGSGVIAGGGDNGMLTLYNVTHILSSGKEPVIAQRQKHTGAVRALDFNPFQGNLLASGANDSEIFIWDLNNLSVPMTPGSKSQPQQPLEDIKALSWNRQVQHILSSAHPSGKAVVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDIATQLVLCSEDDRLPVIQLWDLRFASSPLKVLESHSRGILSVSWSQADAELLLSSAKDSQILCWNLGSSEVVYKLPTQSSWCFDVQWCPRDPPVFSAASFDGWISLYSVMGRNWEVQQMRQADKISSSFSKGQPLPPLQVPEQVVQASLIPPLKKPPKWMRRPAGVSFAFGGKLVTFGLLSTTAHQVPQPCLHLVFISQVTTEPEFLTRSAELQEALGSGNVLNYCQNKIQQVTLPSEKMLWQFLKVTLEKDSRMKFLKLLGYNKDELQKKVAMWLKSDLGLGESPQPKEDAPNSSRRQAFCSQTSEHSAEEASASSSFFDELVPQNITPWEIPITEDADGLLSQALLLGELGPAVELCLKEERFADAIILAQAGGADLLKQTQERYLAKKKTRIAPLLACVTQKSWRDMVCACSLKNWREALALLLTYSGPEKFPELCDMLGTRMEQEGSRALTSEARLCYVCSGSVERLVECWAKCHQASSPMALQDLMEKVMVLNKSLELLRGPDGVSPGPATTSRVTQYAHLLAAQGSLNAAMSYLPSDCAQPPIQQLRDRLFHAQGSGVLGQQSPPFPFPRVVVGAIPTSQETSSHRLGFQSSHQVPTPSVRPRISTPQSSLVMPSTSSHPVPYQGSRMKNTSDYRPPGFQESQPLPLGPGVRPASSQPRLLGRPRVQAPNPVRFPGTWPLPGPPPPMAPADIMPPGSASLPETPRLVPLLPVRTPGLGPMNSQPPAPPVSLPAAHPSGGPGAPCASAPPATDLLTPQPGPQDSLKNAPVPRGSLQRKKLPETFMPPAPITAPVMCLTPEPRGLLSSQPAVPSVSQAPSGAPGELGLQRLQQPPEKMDMKELPPEHESLKISFEALLQRCSLSATDLKTKRKLDEAAQRLECLYEKLRERTLSPPVLTGLHEVARCADTGSFEQGLAVHAQVVGYSSFSEVSSFMPALKSILTIALKLHV", "length": 1181, "header": "tr|A0A287ALY3-1|A0A287ALY3_PIG Isoform 1 of Protein transport protein Sec31A OS=Sus scrofa OX=9823 GN=SEC31B PE=1 SV=3 CANONICAL=A0A287ALY3-1" }, "locus": { "chromosome": "14", "start_pos": 111621527, "end_pos": 111592774, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060097.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060097.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044895.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044895.3" } ] } }, { "isoform_ac": "A0A5G2Q7T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3/entry#A0A5G2Q7T1-1", "sequence": { "sequence": "MTVFCLPTGQTMKLKELERPAVQVWSPASQYPVYLATGTSAQQLDASFSTNGTLEIFEVDFRDPSLDLKRKGILSASSRFHKLIWGSFGNGLLEGSGVIAGGGDNGMLTLYNVTHILSSGKEPVIAQRQKHTGAVRALDFNPFQGNLLASGANDSEIFIWDLNNLSVPMTPGSKSQPLEDIKALSWNRQVQHILSSAHPSGKAVVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDIATQLVLCSEDDRLPVIQLWDLRFASSPLKVLESHSRGILSVSWSQADAELLLSSAKDSQILCWNLGSSEVVYKLPTQSSWCFDVQWCPRDPPVFSAASFDGWISLYSVMGRNWEVQQMRQADKVPEQVVQASLIPPLKKPPKWMRRPAGVSFAFGGKLVTFGLLSTTAHQVPQPCLHLVFISQVTTEPEFLTRSAELQEALGSGNVLNYCQNKIQQVTLPSEKMLWQFLKVTLEKDSRMKFLKLLGYNKDELQKKVAMWLKSDLGLGESPQPKEDAPNSSRRQAFCSQTSEHSAEEASASSSFFDELVPQNITPWEIPITEDADGLLSQALLLGELGPAVELCLKEERFADAIILAQAGGADLLKQTQERYLAKKKTRIAPLLACVTQKSWRDMVCACSLKNWREALALLLTYSGPEKFPELCDMLGTRMEQEGSRALTSEARLCYVCSGSVERLVECWAKCHQASSPMALQDLMEKVMVLNKSLELLRGPDGVSPGPATTSRVTQYAHLLAAQGSLNAAMSYLPSDCAQPPIQQLRDRLFHAQGSGVLGQQSPPFPFPRVVVGAIPTSQETSSHRLGFQSSHQVPTPSVRPRISTPQSSLVMPSTSSHPVPYQGSRMKNTSDYRPPGFQESQPLPLGPGVRPASSQPRLLGRPRVQAPNPVRFPGTWPLPGPPPPMAPADIMPPGSASLPETPRLVPLLPVRTPGLGPMNSQPPAPPVSLPAAHPSGGPGAPCASAPPATDLLTPQPGPQDSLKNAPVPRGSLQRKKRLQQPPEKMDMKELPPEHESLKISFEALLQRCSLSATDLKTKRKLDEAAQRLECLYEKLRERTLSPPVLTGLHEVARCADTGSFEQGLAVHAQVVGYSSFSEVSSFMPALKSILTIALKLHV", "length": 1125, "header": "tr|A0A5G2Q7T1-1|A0A287ALY3_PIG Computationally mapped isoform of Protein transport protein Sec31A OS=Sus scrofa OX=9823 GN=SEC31B PE=1 SV=1 CANONICAL=A0A287ALY3-1" }, "locus": { "chromosome": "14", "start_pos": 111621560, "end_pos": 111592774, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086557.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086557.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060179.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060179.1" } ] } }, { "isoform_ac": "A0A5G2R798-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3/entry#A0A5G2R798-1", "sequence": { "sequence": "MTVFCLPTGQTMKLKELERPAVQVWSPASQYPVYLATGTSAQQLDASFSTNGTLEIFEVDFRDPSLDLKRKGILSASSRFHKLIWGSFGNGLLEGSGVIAGGGDNGMLTLYNVTHILSSGKEPVIAQRQKHTGAVRALDFNPFQGNLLASGANDSEIFIWDLNNLSVPMTPGSKSQPLEDIKALSWNRQVQHILSSAHPSGKAVVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDIATQLVLCSEDDRLPVIQLWDLRFASSPLKVLESHSRGILSVSWSQADAELLLSSAKDSQILCWNLGSSEVVYKLPTQSSWCFDVQWCPRDPPVFSAASFDGWISLYSVMGRNWEVQQMRQADKISSSFSKGQPLPPLQVPEQVVQASLIPPLKKPPKWMRRPAGVSFAFGGKLVTFGLLSTTAHQVPQPCLHLVFISQVTTEPEFLTRSAELQEALGSGNVLNYCQNKIQQVTLPSEKMLWQFLKVTLEKDSRMKFLKLLGYNKDELQKKVAMWLKSDLGLGESPQPKEDAPNSSRRQAFCSQTSEHSAEEASASSSFFDELVPQNITPWEIPITEDADGLLSQALLLGELGPAVELCLKEERFADAIILAQAGGADLLKQTQERYLAKKKTRIAPLLACVTQKSWRDMVCACSLKNWREALALLLTYSGPEKFPELCDMLGTRMEQEGSRALTSEARLCYVCSGSVERLVECWAKCHQASSPMALQDLMEKVMVLNKSLELLRGPDGVSPGPATTSRVTQYAHLLAAQGSLNAAMSYLPSDCAQPPIQQLRDRLFHAQGSGVLGQQSPPFPFPRVVVGAIPTSQETSSHRLGFQSSHQVPTPSVRPRISTPQSSLVMPSTSSHPVPYQGSRMKNTSDYRPPGFQESQPLPLGPGVRPASSQPRLLGRPRVQAPNPVRFPGTWPLPGPPPPMAPADIMPPGSASLPETPRLVPLLPVRTPGLGPMNSQPPAPPVSLPAAHPSGGPGAPCASAPPATDLLTPQPGPQDSLKNAPVPRGSLQRKKLPETFMPPAPITAPVMCLTPEPRGLLSSQPAVPSVSQAPSGAPGELGLQRLQQPPEKMDMKELPPEHESLKISFEALLQRCSLSATDLKTKRKLDEAAQRLECLYEKLRERTVHTVGSPPPPPSARPSGDRLPKTCLCLGQFPQYPFKERGKKKKGEGRDSWKACASRGPLQKEDVATAETFQQKLGAGRDE", "length": 1210, "header": "tr|A0A5G2R798-1|A0A5G2R798_PIG Computationally mapped isoform of SEC31 homolog B, COPII coat complex component OS=Sus scrofa OX=9823 GN=SEC31B PE=1 SV=1 CANONICAL=A0A287ALY3-1" }, "locus": { "chromosome": "14", "start_pos": 111621560, "end_pos": 111588094, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077395.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077395.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072215.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072215.1" } ] } }, { "isoform_ac": "F1RWL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3/entry#F1RWL8-1", "sequence": { "sequence": "MTVFCLPTGQTMKLKELERPAVQVWSPASQYPVYLATGTSAQQLDASFSTNGTLEIFEVDFRDPSLDLKRKGILSASSRFHKLIWGSFGNGLLEGSGVIAGGGDNGMLTLYNVTHILSSGKEPVIAQRQKHTGAVRALDFNPFQGNLLASGANDSEIFIWDLNNLSVPMTPGSKSQPLEDIKALSWNRQVQHILSSAHPSGKAVVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDIATQLVLCSEDDRLPVIQLWDLRFASSPLKVLESHSRGILSVSWSQADAELLLSSAKDSQILCWNLGSSEVVYKLPTQSSWCFDVQWCPRDPPVFSAASFDGWISLYSVMGRNWEVQQMRQADKISSSFSKGQPLPPLQVPEQVVQASLIPPLKKPPKWMRRPAGVSFAFGGKLVTFGLLSTTAHQVPQPCLHLVFISQVTTEPEFLTRSAELQEALGSGNVLNYCQNKIQQVTLPSEKMLWQFLKVTLEKDSRMKFLKLLGYNKDELQKKVAMWLKSDLGLGESPQPKEDAPNSSRRQAFCSQTSEHSAEEASASSSFFDELVPQNITPWEIPITEDADGLLSQALLLGELGPAVELCLKEERFADAIILAQAGGADLLKQTQERYLAKKKTRIAPLLACVTQKSWRDMVCACSLKNWREALALLLTYSGPEKFPELCDMLGTRMEQEGSRALTSEARLCYVCSGSVERLVECWAKCHQASSPMALQDLMEKVMVLNKSLELLRGPDGVSPGPATTSRVTQYAHLLAAQGSLNAAMSYLPSDCAQPPIQQLRDRLFHAQGSGVLGQQSPPFPFPRVVVGAIPTSQETSSHRLGFQSSHQVPTPSVRPRISTPQSSLVMPSTSSHPVPYQGSRMKNTSDYRPPGFQESQPLPLGPGVRPASSQPRLLGRPRVQAPNPVRFPGTWPLPGPPPPMAPADIMPPGSASLPETPRLVPLLPVRTPGLGPMNSQPPAPPVSLPAAHPSGGPGAPCASAPPATDLLTPQPGPQDSLKNAPVPRGSLQRKKLPETFMPPAPITAPVMCLTPEPRGLLSSQPAVPSVSQAPSGAPGELGLQRLQQPPEKMDMKELPPEHESLKISFEALLQRCSLSATDLKTKRKLDEAAQRLECLYEKLRERTSADCLYGSQHKYFSSRNAG", "length": 1149, "header": "tr|F1RWL8-1|A0A287ALY3_PIG Computationally mapped isoform of Protein transport protein Sec31A OS=Sus scrofa OX=9823 GN=SEC31B PE=1 SV=3 CANONICAL=A0A287ALY3-1" }, "locus": { "chromosome": "14", "start_pos": 111621560, "end_pos": 111590832, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006759.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006759.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006576.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006576.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7T1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7T1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALY3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3" } ], "pmid": "" }, { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALY3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3" } ], "pmid": "" }, { "name": "COPII-coated vesicle cargo loading", "id": "GO:0090110", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090110", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALY3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3" } ], "pmid": "" }, { "name": "endoplasmic reticulum organization", "id": "GO:0007029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007029", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALY3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALY3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3" } ], "pmid": "" }, { "name": "ER to Golgi transport vesicle membrane", "id": "GO:0012507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012507", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALY3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALY3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3" } ], "pmid": "" }, { "name": "endoplasmic reticulum exit site", "id": "GO:0070971", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070971", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALY3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3" } ], "pmid": "" }, { "name": "COPII vesicle coat", "id": "GO:0030127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030127", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALY3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural molecule activity", "id": "GO:0005198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005198", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALY3", "url": "https://www.uniprot.org/uniprotkb/A0A287ALY3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 153, "end_pos": 155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 520, "end_pos": 522, "annotation": "n_glycosylation_sequon" }, { "start_pos": 553, "end_pos": 555, "annotation": "n_glycosylation_sequon" }, { "start_pos": 724, "end_pos": 726, "annotation": "n_glycosylation_sequon" }, { "start_pos": 862, "end_pos": 864, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ALY3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1181, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ALY3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ALY3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 }, { "start_pos": 142, "end_pos": 144 }, { "start_pos": 153, "end_pos": 155 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 520, "end_pos": 522 }, { "start_pos": 553, "end_pos": 555 }, { "start_pos": 724, "end_pos": 726 }, { "start_pos": 862, "end_pos": 864 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, 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"authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJN3", "url": "https://www.uniprot.org/uniprotkb/A0A287AJN3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3H427-1", "protein_name": "Adipose-secreted signaling protein", "gene_name": "C6H20orf27", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": 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Classification" ] }, { "id": "A0A286ZSA3", "url": "https://www.orthodb.org/?gene=A0A286ZSA3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A287AL95", "url": "https://www.orthodb.org/?gene=A0A287AL95", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23055", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23055", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23055:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23055:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5576894", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5576894", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003359395", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003359395", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZSA3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZSA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSA3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AL95", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AL95-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TWS0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TWS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TWS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TWS0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXQ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8T5", "url": "https://www.uniprot.org/uniprotkb/F1S8T5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8T5-1", "url": "https://www.uniprot.org/uniprotkb/F1S8T5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGQGRKESLSDSRDLDGSYDQLTDSVEDEFELSTVCHRPEGLEQLQEQTKFTRKELQVLYRGFKNECPSGIVNEENFKQIYSQFFPQGDSSTYATFLFNAFDTNHDGSVSFEDFVAGLSVILRGTTDDRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQKDENIMRSMQLFDNVI", "length": 220, "header": "tr|A0A287AL95-1|A0A287AL95_PIG Isoform 1 of Potassium voltage-gated channel interacting protein 2 OS=Sus scrofa OX=9823 GN=KCNIP2 PE=3 SV=2 CANONICAL=A0A287AL95-1" }, "isoforms": [ { "isoform_ac": "A0A286ZSA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95/entry#A0A286ZSA3-1", "sequence": { "sequence": "MRGQGRKESLSDSRDLDGSYDQLTGHPPGPTKKALKQRFLKLLPCCGPQALPSVSENSVEDEFELSTVCHRPEGLEQLQEQTKFTRKELQVLYRGFKNECPSGIVNEENFKQIYSQFFPQGDSSTYATFLFNAFDTNHDGSVSFEDFVAGLSVILRGTTDDRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQKDENIMRSMQLFDNVI", "length": 252, "header": "tr|A0A286ZSA3-1|A0A287AL95_PIG Computationally mapped isoform of Potassium voltage-gated channel interacting protein 2 OS=Sus scrofa OX=9823 GN=KCNIP2 PE=3 SV=1 CANONICAL=A0A287AL95-1" }, "locus": { "chromosome": "14", "start_pos": 112876165, "end_pos": 112858397, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053028.1", "url": "https://www.ensembl.org/id/ENSSSCT00000053028.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034351.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034351.1" } ] } }, { "isoform_ac": "A0A287AL95-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95/entry#A0A287AL95-1", "sequence": { "sequence": "MRGQGRKESLSDSRDLDGSYDQLTDSVEDEFELSTVCHRPEGLEQLQEQTKFTRKELQVLYRGFKNECPSGIVNEENFKQIYSQFFPQGDSSTYATFLFNAFDTNHDGSVSFEDFVAGLSVILRGTTDDRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQKDENIMRSMQLFDNVI", "length": 220, "header": "tr|A0A287AL95-1|A0A287AL95_PIG Isoform 1 of Potassium voltage-gated channel interacting protein 2 OS=Sus scrofa OX=9823 GN=KCNIP2 PE=3 SV=2 CANONICAL=A0A287AL95-1" }, "locus": { "chromosome": "14", "start_pos": 112876165, "end_pos": 112858397, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051678.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051678.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044674.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044674.2" } ] } }, { "isoform_ac": "A0A4X1TWS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95/entry#A0A4X1TWS0-1", "sequence": { "sequence": "MNLEGLEMVAVLVVLALFVKVLEQFGLFEPVSLEDSVEDEFELSTVCHRPEGLEQLQEQTKFTRKELQVLYRGFKNECPSGIVNEENFKQIYSQFFPQGDSSTYATFLFNAFDTNHDGSVSFEDFVAGLSVILRGTTDDRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQKDENIMRSMQLFDNVI", "length": 230, "header": "tr|A0A4X1TWS0-1|A0A4X1TWS0_PIG Computationally mapped isoform of Potassium voltage-gated channel interacting protein 2 OS=Sus scrofa OX=9823 GN=KCNIP2 PE=3 SV=1 CANONICAL=A0A287AL95-1" }, "locus": { "chromosome": "14", "start_pos": 112865312, "end_pos": 112858397, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044914.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044914.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056271.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056271.2" } ] } }, { "isoform_ac": "A0A5G2QXQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95/entry#A0A5G2QXQ6-1", "sequence": { "sequence": "MRGQGRKESLSDSRDLDGSYDQLTDSVEDEFELSTVCHRPEGLEQLQEQTKFTRKELQVLYRGFKNECPSGIVNEENFKQIYSQFFPQGDSSTYATFLFNAFDTNHDGSVSFEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQKDENIMRSMQLFDNVI", "length": 184, "header": "tr|A0A5G2QXQ6-1|A0A287AL95_PIG Computationally mapped isoform of Potassium voltage-gated channel interacting protein 2 OS=Sus scrofa OX=9823 GN=KCNIP2 PE=3 SV=1 CANONICAL=A0A287AL95-1" }, "locus": { "chromosome": "14", "start_pos": 112876165, "end_pos": 112858397, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087736.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087736.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066729.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066729.1" } ] } }, { "isoform_ac": "F1S8T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95/entry#F1S8T5-1", "sequence": { "sequence": "MRGQGRKESLSDSRDLDGSYDQLTGHPPGPTKKALKQRFLKLLPCCGPQALPSVSEIGRVFRFLGDSSLPSALAAPASLRPHRPRPLDPDSVEDEFELSTVCHRPEGLEQLQEQTKFTRKELQVLYRGFKNECPSGIVNEENFKQIYSQFFPQGDSSTYATFLFNAFDTNHDGSVSFEDFVAGLSVILRGTTDDRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQKDENIMRSMQLFDNVI", "length": 285, "header": "tr|F1S8T5-1|F1S8T5_PIG Computationally mapped isoform of Potassium voltage-gated channel interacting protein 2 OS=Sus scrofa OX=9823 GN=KCNIP2 PE=3 SV=2 CANONICAL=A0A287AL95-1" }, "locus": { "chromosome": "14", "start_pos": 112876165, "end_pos": 112858397, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011562.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011562.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011260.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011260.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXQ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5576894", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5576894", "resource": "Reactome", "description": "Phase 1 - inactivation of fast Na+ channels" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z9Q8-1", "protein_name": "Potassium voltage-gated channel interacting protein 2", "gene_name": "KCNIP2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "GGPELLHPTLSSLLPCWVRHCSWGVSVPAALLDLQELQTVGIILPLCSSFKLLHVLGIVDPSGGGNPPGQTKKALKQRFLKLLPCCRPKSIPSLSESNVEDEFELSTVCHRPEGLEQLQEQTKFTRKELQVLYRGFKNECPSGIVNEENFKQIYSQFFPQGDSSTYATFLFNAFDTDHDGSVSFEDFVSGLSIILRGTIDDRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPAMREEAPREHVENFFQKMDRNKDGVVTIEEFLESCQKDENIMRSMQLFDNVI", "length": 292 }, "evidence": [ { "id": "A0A287AL95", "url": "https://omabrowser.org/oma/group/A0A287AL95/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7GS34-1", "protein_name": "Kv channel-interacting protein 2 isoform X4", "gene_name": "Kcnip2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MRGQGRKESLSESRDLDGSYDQLTGHPPGPTKKALKQRFLKLLPCCGPQALPSVSEISTGLGLLGDNSLPSALAAPASLRPHRPRPLDPDSVEDEFELSTVCHRPEGLEQLQEQTKFTRKELQVLYRGFKNECPSGIVNEENFKQIYSQFFPQGDSSTYATFLFNAFDTNHDGSVSFEDFVFGLSVILRGTIDDRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKHTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQKDENIMRSMQLFDNVI", "length": 285 }, "evidence": [ { "id": "A0A287AL95", "url": "https://omabrowser.org/oma/group/A0A287AL95/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9SYI1-1", "protein_name": "Potassium voltage-gated channel interacting protein 2", "gene_name": "KCNIP2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNRCPRRCRSPLGQAARSLYQLVTGSLSPDSVEDEFELSTVCHRPEGLEQLQEQTKFTRKELQVLYRGFKNECPSGIVNEENFKQIYSQFFPQGDSSTYATFLFNAFDTNHDGSVSFEDFVAGLSVILRGTTDDRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQKDENIMRSMQLFDNVI", "length": 225 }, "evidence": [ { "id": "A0A287AL95", "url": "https://omabrowser.org/oma/group/A0A287AL95/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9JJ69-1", "protein_name": "A-type potassium channel modulatory protein KCNIP2", "gene_name": "Kcnip2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRGQGRKESLSDSRDLDGSYDQLTGHPPGPSKKALKQRFLKLLPCCGPQALPSVSETLAAPASLRPHRPRPLDPDSVEDEFELSTVCHRPEGLEQLQEQTKFTRRELQVLYRGFKNECPSGIVNEENFKQIYSQFFPQGDSSNYATFLFNAFDTNHDGSVSFEDFVAGLSVILRGTIDDRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQQDENIMRSMQLFDNVI", "length": 270 }, "evidence": [ { "id": "A0A287AL95", "url": "https://omabrowser.org/oma/group/A0A287AL95/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JM59-1", "protein_name": "A-type potassium channel modulatory protein KCNIP2", "gene_name": "Kcnip2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRGQGRKESLSESRDLDGSYDQLTGHPPGPSKKALKQRFLKLLPCCGPQALPSVSETLAAPASLRPHRPRPLDPDSVEDEFELSTVCHRPEGLEQLQEQTKFTRRELQVLYRGFKNECPSGIVNEENFKQIYSQFFPQGDSSNYATFLFNAFDTNHDGSVSFEDFVAGLSVILRGTIDDRLSWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQQDENIMRSMQLFDNVI", "length": 270 }, "evidence": [ { "id": "A0A287AL95", "url": "https://omabrowser.org/oma/group/A0A287AL95/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9NS61-1", "protein_name": "A-type potassium channel modulatory protein KCNIP2", "gene_name": "KCNIP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRGQGRKESLSDSRDLDGSYDQLTGHPPGPTKKALKQRFLKLLPCCGPQALPSVSETLAAPASLRPHRPRLLDPDSVDDEFELSTVCHRPEGLEQLQEQTKFTRKELQVLYRGFKNECPSGIVNEENFKQIYSQFFPQGDSSTYATFLFNAFDTNHDGSVSFEDFVAGLSVILRGTVDDRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQKDENIMRSMQLFDNVI", "length": 270 }, "evidence": [ { "id": "A0A287AL95", "url": "https://omabrowser.org/oma/group/A0A287AL95/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL95", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95" } ], "pmid": "" }, { "name": "monoatomic ion channel complex", "id": "GO:0034702", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034702", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL95", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL95", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95" } ], "pmid": "" }, { "name": "voltage-gated potassium channel complex", "id": "GO:0008076", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008076", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL95", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL95", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95" } ], "pmid": "" }, { "name": "potassium channel activity", "id": "GO:0005267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005267", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL95", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95" } ], "pmid": "" }, { "name": "potassium channel regulator activity", "id": "GO:0015459", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015459", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL95", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95" 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"evidence": [ { "database": "UniProtKB", "id": "A0A287AL95", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95" } ], "pmid": "" }, { "name": "action potential", "id": "GO:0001508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001508", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL95", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95" } ], "pmid": "" }, { "name": "regulation of membrane repolarization", "id": "GO:0060306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060306", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL95", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95" } ], "pmid": "" }, { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL95", "url": "https://www.uniprot.org/uniprotkb/A0A287AL95" } ], "pmid": "" }, { "name": "positive regulation of potassium ion export across plasma membrane", "id": "GO:1903766", "url": 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KH RNA binding domain containing, signal transduction associated 1 OS=Sus scrofa OX=9823 GN=KHDRBS1 PE=1 SV=1 CANONICAL=A0A287AWZ0-1" }, "isoforms": [ { "isoform_ac": "A0A287AWZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWZ0/entry#A0A287AWZ0-1", "sequence": { "sequence": "MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQAPSRQPPLPHRSRGGGGGSRGGARASPATQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPPPAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTRPSLKAPPARPVKGAYREHPYGRY", "length": 404, "header": "tr|A0A287AWZ0-1|A0A287AWZ0_PIG Isoform 1 of KH RNA binding domain containing, signal transduction associated 1 OS=Sus scrofa OX=9823 GN=KHDRBS1 PE=1 SV=1 CANONICAL=A0A287AWZ0-1" }, "locus": { "chromosome": "6", "start_pos": 88557278, "end_pos": 88530509, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045076.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045076.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048446.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048446.1" } ] } }, { "isoform_ac": "I3LP11-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWZ0/entry#I3LP11-1", "sequence": { "sequence": "MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQAPSRQPPLPHRSRGGGGGSRGGARASPATQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPPPAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTRPSLKAPPARPVKGAYREHPYGRY", "length": 443, "header": "tr|I3LP11-1|A0A287AWZ0_PIG Computationally mapped isoform of KH RNA binding domain containing, signal transduction associated 1 OS=Sus scrofa OX=9823 GN=KHDRBS1 PE=1 SV=1 CANONICAL=A0A287AWZ0-1" }, "locus": { "chromosome": "6", "start_pos": 88557278, "end_pos": 88530509, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028289.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028289.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026354.2", "url": "https://www.ensembl.org/id/ENSSSCP00000026354.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 84, "start_aa": "Thr", "end_pos": 84, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr84", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LP11", "url": "https://www.uniprot.org/uniprotkb/I3LP11" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8849468", "name": "", "url": 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"Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "47560", "url": "https://www.rhea-db.org/rhea/47560", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "47588", "url": "https://www.rhea-db.org/rhea/47588", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "52316", "url": "https://www.rhea-db.org/rhea/52316", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "52380", "url": "https://www.rhea-db.org/rhea/52380", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "65432", "url": "https://www.rhea-db.org/rhea/65432", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B479", "url": "https://www.uniprot.org/uniprotkb/A0A287B479", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B479-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B479-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR15-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR15-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R125", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R125", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R125-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R125-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0ZT53", "url": "https://www.uniprot.org/uniprotkb/A0A8D0ZT53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0ZT53-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0ZT53-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0ZYT2", "url": "https://www.uniprot.org/uniprotkb/A0A8D0ZYT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0ZYT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0ZYT2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S6H2", "url": "https://www.uniprot.org/uniprotkb/F1S6H2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S6H2-1", "url": "https://www.uniprot.org/uniprotkb/F1S6H2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISKCREWGLPGMLALWPGRSDWSACLLSFSVSSFYFPILEKKEPCLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIAADKLLRLPMQQPHKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAQNKKESIHYYEQITIKSMAWSGHNVSQEALAIKRMLEIGAVKNLTYF", "length": 333, "header": "tr|A0A287AWN7-1|A0A287AWN7_PIG Isoform 1 of CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 OS=Sus scrofa OX=9823 GN=ST3GAL4 PE=3 SV=1 CANONICAL=A0A287AWN7-1" }, "isoforms": [ { "isoform_ac": "A0A287AWN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7/entry#A0A287AWN7-1", "sequence": { "sequence": "MISKCREWGLPGMLALWPGRSDWSACLLSFSVSSFYFPILEKKEPCLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIAADKLLRLPMQQPHKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAQNKKESIHYYEQITIKSMAWSGHNVSQEALAIKRMLEIGAVKNLTYF", "length": 333, "header": "tr|A0A287AWN7-1|A0A287AWN7_PIG Isoform 1 of CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 OS=Sus scrofa OX=9823 GN=ST3GAL4 PE=3 SV=1 CANONICAL=A0A287AWN7-1" }, "locus": { "chromosome": "9", "start_pos": 53483688, "end_pos": 53475849, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060123.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060123.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048282.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048282.2" } ] } }, { "isoform_ac": "A0A287B479-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7/entry#A0A287B479-1", "sequence": { "sequence": "MCPAGWKLLAMLAFVLVVMVWYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIAADKLLRLPMQQPHKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAQNKKESIHYYEQITIKSMAWSGHNVSQEALAIKRMLEIGAVKNLTYF", "length": 332, "header": "tr|A0A287B479-1|A0A287AWN7_PIG Computationally mapped isoform of CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 OS=Sus scrofa OX=9823 GN=ST3GAL4 PE=3 SV=2 CANONICAL=A0A287AWN7-1" }, "locus": { "chromosome": "9", "start_pos": 53483688, "end_pos": 53476412, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045552.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045552.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051230.3", "url": "https://www.ensembl.org/id/ENSSSCP00000051230.3" } ] } }, { "isoform_ac": "A0A5G2QR15-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7/entry#A0A5G2QR15-1", "sequence": { "sequence": "MISKCRWKLLAMLAFVLVVMVWYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIAADKLLRLPMQQPHKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAQNKKESIHYYEQITIKSMAWSGHNVSRGPLAGQWTGLLNTQGDPERAGVIQKIITNRVEC", "length": 346, "header": "tr|A0A5G2QR15-1|A0A287AWN7_PIG Computationally mapped isoform of CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 OS=Sus scrofa OX=9823 GN=ST3GAL4 PE=3 SV=1 CANONICAL=A0A287AWN7-1" }, "locus": { "chromosome": "9", "start_pos": 53484432, "end_pos": 53475849, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069072.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069072.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067184.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067184.1" } ] } }, { "isoform_ac": "A0A5G2R125-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7/entry#A0A5G2R125-1", "sequence": { "sequence": "MISKCRWKLLAMLAFVLVVMVWYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIAADKLLRLPMQQPHKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAQNKKESIHYYEQITIKSMARRHGRKVRLSRGPLAGQWTGLLNTQGDPERAGVIQKIITNRVEC", "length": 349, "header": "tr|A0A5G2R125-1|A0A287AWN7_PIG Computationally mapped isoform of CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 OS=Sus scrofa OX=9823 GN=ST3GAL4 PE=3 SV=1 CANONICAL=A0A287AWN7-1" }, "locus": { "chromosome": "9", "start_pos": 53484432, "end_pos": 53475849, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076842.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076842.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064206.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064206.1" } ] } }, { "isoform_ac": "A0A8D0ZT53-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7/entry#A0A8D0ZT53-1", "sequence": { "sequence": "MLALKRSGASAEASTEVARGSRDDSSPQEPCYLRNMISKCRWKLLAMLAFVLVVMVWYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIAADKLLRLPMQQPHKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAQNKKESIHYYEQITIKSMAWSGHNVSQEALAIKRMLEIGAVKNLTYF", "length": 368, "header": "tr|A0A8D0ZT53-1|A0A287AWN7_PIG Computationally mapped isoform of CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 OS=Sus scrofa OX=9823 GN=ST3GAL4 PE=3 SV=1 CANONICAL=A0A287AWN7-1" }, "locus": { "chromosome": "9", "start_pos": 53483688, "end_pos": 53471732, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041454.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041454.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053648.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053648.2" } ] } }, { "isoform_ac": "A0A8D0ZYT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7/entry#A0A8D0ZYT2-1", "sequence": { "sequence": "MISKCRWKLLAMLAFVLVVMVWYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRAWPPVSPAPSGVGLLPAPLTLHFREPVPSHGCHPLLRTTGLDIRILNPFFMEIAADKLLRLPMQQPHKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAQNKKESIHYYEQITIKSMAWSGHNVSQEALAIKRMLEIGAVKNLTYF", "length": 356, "header": "tr|A0A8D0ZYT2-1|A0A287AWN7_PIG Computationally mapped isoform of CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 OS=Sus scrofa OX=9823 GN=ST3GAL4 PE=3 SV=1 CANONICAL=A0A287AWN7-1" }, "locus": { "chromosome": "9", "start_pos": 53483688, "end_pos": 53475849, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064845.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064845.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053147.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053147.2" } ] } }, { "isoform_ac": "F1S6H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7/entry#F1S6H2-1", "sequence": { "sequence": "MEEAGQSREEISAQMLSSCPNRARRKCSLSRTAGLTGREGQVARGSRDDSSPQEPCYLRNMISKCRWKLLAMLAFVLVVMVWYSISREDRYIELFYFPILEKKEPCLQGEAERKVSKLFGNYSQEQPIFLQLKDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSYSIPESIQRLKCRRCVVVGNGHRLRNSLLGEAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFNPKVEDNPDTLLVLVAFKAMDFHWIESILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIAADKLLRLPMQQPHKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAQNKKESIHYYEQITIKSMAWSGHNVSQEALAIKRMLEIGAVKNLTYF", "length": 393, "header": "tr|F1S6H2-1|A0A287AWN7_PIG Computationally mapped isoform of CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 OS=Sus scrofa OX=9823 GN=ST3GAL4 PE=3 SV=2 CANONICAL=A0A287AWN7-1" }, "locus": { "chromosome": "9", "start_pos": 53483688, "end_pos": 53454088, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016598.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016598.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016153.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016153.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S6H2", "url": "https://www.uniprot.org/uniprotkb/F1S6H2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2022854", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022854", "resource": "Reactome", "description": "Keratan sulfate biosynthesis" }, { "id": "R-SSC-4085001", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4085001", "resource": "Reactome", "description": "Sialic acid metabolism" }, { "id": "R-SSC-9037629", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9037629", "resource": "Reactome", "description": "Lewis blood group biosynthesis" }, { "id": "R-SSC-975577", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975577", "resource": "Reactome", "description": "N-Glycan antennae elongation" }, { "id": "R-SSC-977068", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977068", "resource": "Reactome", "description": "Termination of O-glycan biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "positive regulation of leukocyte tethering or rolling", "id": "GO:1903238", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903238", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" }, { "name": "cognition", "id": "GO:0050890", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050890", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" }, { "name": "glycolipid biosynthetic process", "id": "GO:0009247", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009247", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" }, { "name": "protein N-linked glycosylation", "id": "GO:0006487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006487", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" }, { "name": "positive regulation of blood coagulation", "id": "GO:0030194", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030194", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" }, { "name": "oligosaccharide biosynthetic process", "id": "GO:0009312", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009312", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" }, { "name": "sialylation", "id": "GO:0097503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097503", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" }, { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" }, { "name": "glycoprotein biosynthetic process", "id": "GO:0009101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009101", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" }, { "name": "Golgi cisterna membrane", "id": "GO:0032580", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032580", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3- sialyltransferase", "id": "GO:0047288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047288", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" }, { "name": "beta-galactoside (CMP) alpha-2,3-sialyltransferase activity", "id": "GO:0003836", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003836", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" }, { "name": "N-acetyllactosaminide alpha-2,3-sialyltransferase activity", "id": "GO:0008118", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008118", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" }, { "name": "sialyltransferase activity", "id": "GO:0008373", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008373", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWN7", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 310, "end_pos": 312, "annotation": "n_glycosylation_sequon" }, { "start_pos": 329, "end_pos": 331, "annotation": "n_glycosylation_sequon" }, { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "18021", "name": "", "equation": "a ganglioside GM1 (d18:1(4E)) + CMP-N-acetyl-beta-neuraminate = a ganglioside GD1a (d18:1(4E)) + CMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "18021", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/18021" } ] }, { "id": "18913", "name": "", "equation": "a neolactoside nLc4Cer(d18:1(4E)) + CMP-N-acetyl-beta-neuraminate = a neolactoside IV(3)-alpha-NeuAc-nLc4Cer(d18:1(4E)) + CMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "18913", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/18913" } ] }, { "id": "21616", "name": "", "equation": "a beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl derivative + CMP-N-acetyl-beta-neuraminate = an N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl derivative + CMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "21616", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/21616" } ] }, { "id": "47560", "name": "", "equation": "a ganglioside GA1 (d18:1(4E)) + CMP-N-acetyl-beta-neuraminate = a ganglioside GM1b (d18:1(4E)) + CMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "47560", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/47560" } ] }, { "id": "47588", "name": "", "equation": "a ganglioside GT1c (d18:1(4E)) + CMP-N-acetyl-beta-neuraminate = a ganglioside GQ1c (d18:1(4E)) + CMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "47588", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/47588" } ] }, { "id": "52316", "name": "", "equation": "a beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl derivative + CMP-N-acetyl-beta-neuraminate = an N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl derivative + CMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "52316", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/52316" } ] }, { "id": "52380", "name": "", "equation": "a beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminyl derivative + CMP-N-acetyl-beta-neuraminate = an N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminyl derivative + CMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "52380", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/52380" } ] }, { "id": "65432", "name": "", "equation": "a neolactoside nLc4Cer + CMP-N-acetyl-beta-neuraminate = a neolactoside IV(3)-alpha-NeuAc-nLc4Cer + CMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "65432", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/65432" } ] }, { "id": "R-SSC-1022129", "name": "ST3GAL4 transfers Neu5Ac to terminal Gal of N-glycans", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [ "R-ALL-975925" ], "output_participant_list": [ "R-ALL-981615" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1022129", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1022129" } ] }, { "id": "R-SSC-2046285", "name": "ST3GAL1-4,6 optionally cap keratan chain", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2046285", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2046285" } ] }, { "id": "R-SSC-4084984", "name": "ST3GAL1-6 transfer Neu5Ac to terminal Gal (alpha-2,3 link)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [ "R-ALL-4086285" ], "output_participant_list": [ "R-ALL-4086277" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-4084984", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4084984" } ] }, { "id": "R-SSC-9605600", "name": "ST3GAL3,4,6 transfer Neu5Ac to Type 2 chain to form Type 2 MSGG", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9605600", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9605600" } ] }, { "id": "R-SSC-981497", "name": "ST3GAL1-4 transfers sialic acid to the T antigen at the alpha 3 position", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-981497", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-981497" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-4086277", "participant_name": "Neu5Ac-2,3-Gal-R [Golgi lumen]", "crossref": [ { "id": "75127", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-4086285", "participant_name": "Gal-R [Golgi lumen]", "crossref": [ { "id": "61248", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-975925", "participant_name": "Neu5Ac [Golgi lumen]", "crossref": [ { "id": "17012", "database": "ChEBI", "url": "" }, { "id": "G81533KY", "database": "GlyTouCan", "url": "" }, { "id": "C00270", "database": "COMPOUND", "url": "" }, { "id": "ZINC000004081651", "database": "ZINC", "url": "" }, { "id": "ZINC000003793840", "database": "ZINC", "url": "" }, { "id": "C03525", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-981615", "participant_name": "Glycoprotein-Neu5Ac [Golgi lumen]", "crossref": [ { "id": "33837", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AWN7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 333, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AWN7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AWN7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G00201AB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00231WL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00241VQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00320ZP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00368HM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00420CS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00468NI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00531ZU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00646SN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00662IB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00706AL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00728SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00835TJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00886GB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00909PI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00923KH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00948WV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00978GW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01034MJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01044XE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01050GH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01123UL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01218JA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01244DB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01310VF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01354KL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01375NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01406RR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01437WY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01457KB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01522FD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01571OF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01631SU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01669LU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01674VT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01701XV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01734XU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01789AQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01827FA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01851EU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01917CF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01962RN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01978EJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02076VP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02132BT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02150AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02152MS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02174FQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02193CV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02207TG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02231KH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02296PF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02302MM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02311IE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02387FV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02393LQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02407HJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G02442YU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G02470AU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02470WS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02539TH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02562EQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02582JY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G02745NU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02760XH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02934UB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02942YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03016BW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03019AY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G03048ZV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G03075ZE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03093CG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03096WL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03164NE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03168RN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03229IR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03230AX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G03250UN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G03260OU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03266UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03325PY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G03345AP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03385XG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03393PF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G03414KZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03479ZN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G03529DJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03542LT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03583SA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G03591CN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03600YM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G03668AQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G03670RH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03708WQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G03754YM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G03895SR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03912QC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G03948VT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G04023GJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G04163JP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G04214MY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G04241HQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G04273XP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G04275BW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G04291AF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G04324CR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04423CA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G04477MN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G04512BK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G04585NN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G04602UT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G04692NU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G04713JC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G04764ON", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G04783EJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G04823YN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G04844PH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G04903PZ", "type": "N-linked", "subtype": "Triantennary" }, { 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"type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G09575SG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G09579UY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G09601WV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G09635US", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G09678FF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09713JE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G09767ET", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G09781FH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09826WW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G09852PG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G09857WN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G09909FT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": 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"type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G10897DJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G10924UK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G10925II", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10954DW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10965ZT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G11034PZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G11102NL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G11180GU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G11182ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G11318UD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G11323LX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G11360MY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G11457RF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11479AN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G11508EH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G11530HI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G11541AS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G11543SV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G11671GQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G11986EX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12187FG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G12222NC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12241WD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12254MW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12259JN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12318EJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12352RJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12428MZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12448WG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12472CC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12531EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G12594VB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12631FF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12715AH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G12727SF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G12775AE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12788PX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G12986NJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13135UM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13156PQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13210XL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13260JU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13282WA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13284GZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13291XJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13322RS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13346PK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13382WY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13412NN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13444XN", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G13495RN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13496UJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13585JF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13626CZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13659RH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G14047PA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G14233VW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14393TF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14428PM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G14431ZQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14438ZT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G14690RN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14722QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14781HP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14801HT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14867MM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14899VS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G14920YO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G14942ZU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G14954HI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G14996IQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G14998UC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G15006PM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G15204IM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G15220QC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15249CA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15303EK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G15306QC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G15318TJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G15355KC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G15530MC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G15571KX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G15648GT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15696VL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G15717HW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G15730FJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G15794TC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G15821ZM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G15859AU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16028RM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G16038YA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16150CJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16155TD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16201LW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G16294GR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G16340ZJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G16341ZC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G16393FR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16397GM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G16403CC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16437LH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G16476DW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16510IU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16516HD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16529MG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16702HQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16705KA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G16743OM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G16759KR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G16774YZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G16782SL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G16827VK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16873YG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G16986CA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17029BL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G17041TR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G17044PM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G17118PL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G17153CQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17155VX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G17164DX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17168RO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17172ZR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G17228YV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17236US", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17251XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17253JN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17315BS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17331IX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17348SA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17389EH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G17431SG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17441MI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17473NR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G17527HL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17539BJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17540HT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G17545ER", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G17597KD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17689DH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G17740GV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17754FF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G17769YX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G17851MM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G17857ZF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17909DH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G17940HM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17964DY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G17964XN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G17969PJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G18125MC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G18133RH", "type": "N-linked", "subtype": "Triantennary" }, { 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"Triantennary" }, { "glytoucan_ac": "G18913QB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G18969PK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G18972WN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19104OH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19140RD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19146BQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19197RD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19209QL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19212IL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19231UV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G19243TV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19289JN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19294RF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19304XI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19429IT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19469VZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19471FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19541IU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19565UD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19607EP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19636RY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19664QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19697JA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19784PB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19793PI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19806ZW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19854PG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19854WU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19885CO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20169US", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20172ET", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20197BG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20246IY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G20268UK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20284VH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20326YW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20394QS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20453WS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20636FS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20650NV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20652MD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20662UG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20711NK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20745AF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20758LC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20768QM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20794PH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G20873FQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20877ZV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20878US", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20885BK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20909AP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20983SP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21005TQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G21072IJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21219OJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21327MO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21343HW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21411AR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G21437MZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21445UU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21454AE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21459ST", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21470TX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21473QQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21550DG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21627CA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21737WY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21755KD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21756MV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21898KP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21933XG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22014NH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22018CH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22137KZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22170TU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22188XM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22237ZE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22252FR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22354SF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22375QZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22385OT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22533WA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22550VJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22562AT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22686TA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22732WO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22836DF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22920IO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22927MQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22949KX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23002WE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23151RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23296IL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23340ZN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23345GE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23436FC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23456BB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23511JD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23546HG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23598DU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23616ZX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23654OQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23718VU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23722TU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23726CO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23773CP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23819TW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23866EW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23914JN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24046UO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24070RM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24084TY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24122ZI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24125FE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24142JB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24203FO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24229GD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24283IO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24284HU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24293BT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24336IA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24413UY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24475OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24517QL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24546DC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24655MP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24705DL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24766QM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24798BT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24816DA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24856YP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24875YE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24920KE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24936MG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24970UY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25019NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25104PV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25127JU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25173WC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25224QY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25297CU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25322NY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25322UQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25392ZR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25416CE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25423CA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25460BQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25471TG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25498HI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25499LZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25612NR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G25632TA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25682YL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25713LT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25731WL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25804NU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25830EV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25902AL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25977RW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26068PU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26070CR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26099QT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G26137IM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26153IK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26179TW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26264SQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26347KH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26357WC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26501HM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26520QU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26537DD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26566WH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G26596ON", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G26714JN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26739XH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26740EB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26762AY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26935KA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27011YI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G27067YD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27071PO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27149SR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27170BX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G27262AE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27273FD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27409LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27419MQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27427OE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27501HT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27516AE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27571QK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G27629LY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27741SW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27814XA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27844UM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27888XB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27889FI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27983PC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G28110RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G28157XS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G28218GE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G28274SP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G28312JO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G28330DZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G28562FF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G28600QE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G28674WF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G28695FK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G28707FT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G28747XN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G28862MM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G28877HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28882QV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G28885XK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28954HQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G28957FB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G29003YB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G29011KL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G29014XV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29017AP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G29130SY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G29184OZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G29248WR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G29276DW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G29277BJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G29443MC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G29524AT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G29630IH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G29633ZY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G29764SO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G29818DV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G29857PJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G30035MO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G30055GV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30062BR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30067CL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30171GE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G30229IT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30296PK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30371AX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G30392XP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30431XW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30437YI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30447NS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30460NZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30723RE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30736BQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30786GZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G30880RA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31018GZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31032XG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31037WG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31087MR", "type": "O-linked", "subtype": "Core 2" }, { 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"subtype": "Complex" }, { "glytoucan_ac": "G31873MP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31948FR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G31984FM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32079YD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32114CQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32216KM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32287FD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32289FM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32364DF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32377GZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32395UL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32418LI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32452EX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32461GF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32510IZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32556JI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G32590UP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32592IB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32659RY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32722PR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32758HZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32761XQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32783AY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32829EU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32853SP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32998WQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33019PZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G33135KB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G33150PJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G33225NX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G33241WC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G33278DK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33309GL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G33415VV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G33427JX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G33528AU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G33612TW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G33620BP", "type": "N-linked", "subtype": "Tetraantennary" }, { 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"Complex" }, { "glytoucan_ac": "G34508UC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34561BL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34611ON", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34631OW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G34725PD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34731QC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34748WY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34784SE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34819LS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34851VW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34859KW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G34863TS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G34931KK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34972BB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35105ZB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35199BM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35243PQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35313CG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35347OW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35438GZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35524PN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35599NO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G35623XW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35636SW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G35708JV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35716TV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35722YG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35734AU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35798GO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35799DH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35888BV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35888WG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35945JK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36003IA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36020VB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G36042WR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36070GZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36138ZV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36152VT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36171JA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36191EH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36194BW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36200ZL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36223VW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36268TW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G36287XJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G36297RV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36303CE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36311ZH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36324QX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G36341AR", "type": "N-linked", "subtype": "Triantennary" 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2" }, { "glytoucan_ac": "G37022BP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37166HP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37239FO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37271FP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37304XT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37306TB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37330EE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37354FL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37487GB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37488LQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37492BZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37626KE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37669IH", "type": "N-linked", 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"Core-fucosylated" }, { "glytoucan_ac": "G39760IQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39761CO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39824OQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39977UQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40027VO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40064GR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40194MN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40212MM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40219EV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40236GK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40289VL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40341NV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40343KH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40411HQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40445LE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40452FK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40463TJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40472QE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40513EI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40542QP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40554DX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40641DI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40707SF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40757HO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40799GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40813TL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40849ON", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40865GN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40903ZD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40909AN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41030WJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41068PD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41087ZA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41095QB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41171HL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41224TP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41245OZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41286JH", "type": "O-linked", "subtype": "Core 4" }, { 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"N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42365AT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42380GI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42393CS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42482KG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42531AE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G42600SB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42635DR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42650PV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42667BL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42686NP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42686NQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42713ZO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42731RJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42746CP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42772WO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42779AL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42824AQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42855XG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42941KJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43088GK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43095XB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43164CL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43167FQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G43220WQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43242DB", "type": "N-linked", "subtype": "Triantennary" }, { 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"subtype": "Complex" }, { "glytoucan_ac": "G47828IM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47835DG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47845XM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47913QC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47961DI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47973FK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48029ME", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G48040FY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48064BJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G48069JX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48109OV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48205IY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48266EY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G48329CR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48330KH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48390CO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48465YI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G48488XT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48503ML", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48518DG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48714ZW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48732OI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48757CJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48767NV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48768LA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G48809ZO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48822BJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48879CK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48882DX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48954CA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G48987LP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49003MO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49020UX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G49053WC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49062LU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49084JY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49101OB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49225WK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49235GA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49305IN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49322HB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G49353WO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49390AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49446SO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49502SC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49544FY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49562JB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49588KJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49616WZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49721KD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49777JB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49832FF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49844LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49935CA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50068PO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50135PA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50189HQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50211SY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50252SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50364FV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50387OH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50427EN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50462VS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50489VC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50508SG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50518XT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50525GP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50554LM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50584UT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50652EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50660UT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50706US", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50731QB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50782LR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50802FP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G50808YS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50821RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50880EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50896EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50915WK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50937OW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50997KD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51018GI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51066TO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51074KT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51086FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51098AA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51162XR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G51168MK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51229TU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51324UL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51333KM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51402XK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51411MW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51500KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51530ER", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51586EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51678TA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51710QD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51768ZH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51793MY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51878LH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51891DI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51921XC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51929IB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52021KR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52120NK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52210EC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52266YB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52345FK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52383QH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52441NC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52483OL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52497YI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52593LK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52621OJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52645LW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52676LZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52701UC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52790YS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52794ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52892AY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52971DE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53028BV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53064IK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53173PI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53208AY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53220ZS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53234IR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53361RA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53396PX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53396TS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53472RQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53504BR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53527TY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53574BW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53723XK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53752TA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53768QW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53778MF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53795OV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53800IE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53800MQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53809CJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53812BX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53818ZZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53840IC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53856PB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53869ZZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53923UR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53944MR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53962WT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53993HS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54010TZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54018RP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54076UX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54083SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54158IT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54162HE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54198RS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54300AX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54317NJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54338PJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54380FJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54413TX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54505OS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G54507ZF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54513OG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54555CN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54556LG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54575IS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54590FS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54599TH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54634UE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G54716GM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54741SP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54956ME", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54970OI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55015QS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G55020XV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G55043JL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55144QZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G55146EO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G55157XP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G55251MD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G55302QK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55360MM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55414RN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G55481KF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55508HJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55630OZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55638XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55645TD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55719AB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55803NG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55818EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55827GK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55867TY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55890VR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55959FD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56095ZZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56147VV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56163DR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56186MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56246PC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56293JI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56318NV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56354PO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56408DR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56418NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56485SI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56492JP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56499YQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56516KW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56529CD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56546LQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56549DH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56577TY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56586OT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56616DG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56657CK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56691CA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56696EG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56703XH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56770AH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56809FB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56830SM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56837YQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56840FF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56850HF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56862WE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56891ZN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56963QZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56988MG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57007KH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57075OH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57117TO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57125VL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57130XG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G57158CS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57220BY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57245TH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57466QX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57504TA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57521CV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57647XA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57774MT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57835AK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57943ZV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57955DP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57960MN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57970NA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57999XS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58004KD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58029XR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58111YY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58194JW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58201OX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58216EF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58217PP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58236FD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58251YC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58254FJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58278VO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58293BE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G58571IP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58577QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58580BP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G58599KY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58611PK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58631QJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58768FH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58780EA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58783PZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58788RE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58808TX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58824DO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G58839SI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58918TF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58931VV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59003TR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59041MP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59128IS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59155GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59159PE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59258LC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59315XJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59345UT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59392WK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59430MJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59454IE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59579TL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59619LB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59622PB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59636XZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59655SA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59659CN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59670YR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59674PZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59683UM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G59733QQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59742GY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59746QC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59752BW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59761EF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59989VG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60012HO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60105PY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60186EO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60227QI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60230OQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60320IS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60330MA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60343KO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60419KX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60439QY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60474DY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60483MG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60527VO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60532CM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60660BN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60667OL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60671JF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60673DJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60687DB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60688LC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60704KF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60705KN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60731ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60814ZB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60829NM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60878OX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60890ZT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60926LS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60926SE", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G60929YB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60949GI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61049GY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61119KT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61158LP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61203OK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61250GU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61434JL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G61467QZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61530CE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G61551YB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G61575RT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61581BE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61676ER", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61692RF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61734US", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61780GR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61809IS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61878VZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61903HE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G61941WO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61964QE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61970XW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62002KG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G62018IE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62074BC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62081IR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G62135TC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62145FH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62146BQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G62196IB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62217NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62306AO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62349ZP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G62387ZO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G62428XG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62437ME", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G62437NU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G62447TX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62464EH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62480RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62488UG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62489DB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62553AU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62619LG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62626SX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62684WO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62746IY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62765SF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62781GE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G62836JK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62955ZH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G62997JW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G63065ZE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63075AF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G63078AB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G63100CN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63125IE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63213PP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63256WN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63317CA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63324SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63333DU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63369FQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G63396ZU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63429EI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63496QU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G63515IC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G63517NT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G63539AZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G63547QM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63565MO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G63665MU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63754TT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63782AK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63787RZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G63791WF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63831UM", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G63879IK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63902MT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63919RG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63939TP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G64008QI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64098AY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G64244LR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G64280VU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G64389UN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G64398GR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G64477EK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G64501OO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G64566OC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64575OQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64577HA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64586PM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G64613CO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64662SH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G64693IG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G64789SR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G64813XA", "type": "N-linked", "subtype": "Complex" 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"categories": [ "Protein" ] }, { "id": "F1SMK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SMK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSGPQQPPPPRRVTNVGSLLLTPQENESLFTFLGKKCVTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRKSEKRRDPPNGPNLPMATVDIKNPEITTNRFYGPQVNNISHTKEKKKGKAKKKRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDFIEKTGGVEAVKNELRRQAPPPPPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPGVGVPPPPPNRMYPPPPPALPSSAPSGPPPPPPPLSVAGSAAPPPPPPPPPPPGPPPPPGLPSDGDHQVPTPAGSKAALLDQIREGAQLKKVEQNSRPVSCSGRDALLDQIRQGIQLKSVSDGQESTPPTPAPTSGIVGALMEVMQKRSKAIHSSDEDEDEDDEEDFEDDDEWED", "length": 505, "header": "tr|A0A287ATX4-1|A0A287ATX4_PIG Isoform 1 of Actin nucleation-promoting factor WASL OS=Sus scrofa OX=9823 GN=WASL PE=1 SV=1 CANONICAL=A0A287ATX4-1" }, "isoforms": [ { "isoform_ac": "A0A287ATX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4/entry#A0A287ATX4-1", "sequence": { "sequence": "MSSGPQQPPPPRRVTNVGSLLLTPQENESLFTFLGKKCVTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRKSEKRRDPPNGPNLPMATVDIKNPEITTNRFYGPQVNNISHTKEKKKGKAKKKRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDFIEKTGGVEAVKNELRRQAPPPPPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPGVGVPPPPPNRMYPPPPPALPSSAPSGPPPPPPPLSVAGSAAPPPPPPPPPPPGPPPPPGLPSDGDHQVPTPAGSKAALLDQIREGAQLKKVEQNSRPVSCSGRDALLDQIRQGIQLKSVSDGQESTPPTPAPTSGIVGALMEVMQKRSKAIHSSDEDEDEDDEEDFEDDDEWED", "length": 505, "header": "tr|A0A287ATX4-1|A0A287ATX4_PIG Isoform 1 of Actin nucleation-promoting factor WASL OS=Sus scrofa OX=9823 GN=WASL PE=1 SV=1 CANONICAL=A0A287ATX4-1" }, "locus": { "chromosome": "18", "start_pos": 23786915, "end_pos": 23722568, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043210.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043210.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047552.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047552.1" } ] } }, { "isoform_ac": "A0A5G2QSR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4/entry#A0A5G2QSR4-1", "sequence": { "sequence": "MSSGPQQPPPPRRVTNVGSLLLTPQENESLFTFLGKKCVTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRKSEKRRDPPNGPNLPMATVDIKNPEITTNRFYGPQVNNISHTKEKKKGKAKKKRLTKADIGTPSNFQHIGHVGWDPNTGFDVSLLFQYDVCGGKKHGFFFSVFISAPPPPPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPGVGVPPPPPNRMYPPPPPALPSSAPSGPPPPPPPLSVAGSAAPPPPPPPPPPPGPPPPPGLPSDGDHQVPTPAGSKAALLDQIREGAQLKKVEQNSRPVSCSGRDALLDQIRQGIQLKSVSDGQESTPPTPAPTSGIVGALMEVMQKRSKAIHSSDEISISDLDQWVKDPAMP", "length": 476, "header": "tr|A0A5G2QSR4-1|A0A5G2QSR4_PIG Computationally mapped isoform of WASP like actin nucleation promoting factor OS=Sus scrofa OX=9823 GN=WASL PE=1 SV=2 CANONICAL=A0A287ATX4-1" }, "locus": { "chromosome": "18", "start_pos": 23784503, "end_pos": 23722568, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080111.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080111.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061208.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061208.2" } ] } }, { "isoform_ac": "F1SMK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4/entry#F1SMK2-1", "sequence": { "sequence": "MSSGPQQPPPPRRVTNVGSLLLTPQENESLFTFLGKKCVTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRKSEKRRDPPNGPNLPMATVDIKNPEITTNRFYGPQVNNISHTKEKKKGKAKKKRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDFIEKTGGVEAVKNELRRQGPPQWSAPPPPPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPGVGVPPPPPNRMYPPPPPALPSSAPSGPPPPPPPLSVAGSAAPPPPPPPPPPPGPPPPPGLPSDGDHQVPTPAGSKAALLDQIREGAQLKKVEQNSRPVSCSGRDALLDQIRQGIQLKSVSDGQESTPPTPAPTSGIVGALMEVMQKRSKAIHSSDEDEDEDDEEDFEDDDEWED", "length": 511, "header": "tr|F1SMK2-1|A0A287ATX4_PIG Computationally mapped isoform of Actin nucleation-promoting factor WASL OS=Sus scrofa OX=9823 GN=WASL PE=1 SV=3 CANONICAL=A0A287ATX4-1" }, "locus": { "chromosome": "18", "start_pos": 23786915, "end_pos": 23722568, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018077.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018077.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017588.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017588.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 460, "start_aa": "Thr", "end_pos": 460, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr460", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 464, "start_aa": "Thr", "end_pos": 464, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr464", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMK2", "url": "https://www.uniprot.org/uniprotkb/F1SMK2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525017", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525017", "resource": "KEGG Pathway" }, { "id": "R-SSC-2029482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "resource": "Reactome", "description": "Regulation of actin dynamics for phagocytic cup formation" }, { "id": "R-SSC-203641", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-203641", "resource": "Reactome", "description": "NOSTRIN mediated eNOS trafficking" }, { "id": "R-SSC-373753", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-373753", "resource": "Reactome", "description": "Nephrin family interactions" }, { "id": "R-SSC-3928662", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928662", "resource": "Reactome", "description": "EPHB-mediated forward signaling" }, { "id": "R-SSC-5663213", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663213", "resource": "Reactome", "description": "RHO GTPases Activate WASPs and WAVEs" }, { "id": "R-SSC-8856828", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "resource": "Reactome", "description": "Clathrin-mediated endocytosis" }, { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-9013406", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013406", "resource": "Reactome", "description": "RHOQ GTPase cycle" }, { "id": "R-SSC-9013424", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013424", "resource": "Reactome", "description": "RHOV GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BTH9-1", "protein_name": "Actin nucleation-promoting factor WASL", "gene_name": "WASL", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSGAPQQPPQPRRVTNVGSLLLTPQENESLFSFLGKKCVTMSSAVVQIYAADRNAMWSKKCCGVACLVKDNPQRSYFIRIYDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVGLNFANEEEAKLFRKTVTDLLGRRQRKSEKRRDPPNGPNLPMATVDIKNPEITTNRFYTPQVNNISYTKEKKKGKTKKRRLTKADIGTPSNFQHIGHVGWDPNTGFDVNNLDPELKNLFDLCGISEAQLKDKETSKAIYDFIEKTGGVEAVKNELRRQAPPPPPPCRGGPPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPGAAVPPPPPNRMYPPPPPVHSSSAPSGPPPPPPPPASGSSAPPPPPPPPPPPGPPPPPGLPSEVDHQLPVPAGNKAALLDQIREGAQLKKVEQNSRPVSCSGRDALLDQIRQGIQLKSVSDGQESAPPTPAPTSGIVGALMEVMQKRSKAIHSSDEDEDEDDEEDFEDDDEWDD", "length": 505 }, "evidence": [ { "id": "A0A287ATX4", "url": "https://omabrowser.org/oma/group/A0A287ATX4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O00401-1", "protein_name": "Actin nucleation-promoting factor WASL", "gene_name": "WASL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSVQQQPPPPRRVTNVGSLLLTPQENESLFTFLGKKCVTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRKSEKRRDPPNGPNLPMATVDIKNPEITTNRFYGPQVNNISHTKEKKKGKAKKKRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDFIEKTGGVEAVKNELRRQAPPPPPPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGPPPPPGLPSDGDHQVPTTAGNKAALLDQIREGAQLKKVEQNSRPVSCSGRDALLDQIRQGIQLKSVADGQESTPPTPAPTSGIVGALMEVMQKRSKAIHSSDEDEDEDDEEDFEDDDEWED", "length": 505 }, "evidence": [ { "id": "A0A287ATX4", "url": "https://omabrowser.org/oma/group/A0A287ATX4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O08816-1", "protein_name": "Actin nucleation-promoting factor WASL", "gene_name": "Wasl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSGQQPPRRVTNVGSLLLTPQENESLFSFLGKKCVTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRKSEKRRDAPNGPNLPMATVDIKNPEITTNRFYSSQVNNISHTKEKKKGKAKKKRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDFIEKTGGVEAVKNELRRQAPPPPPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPGVVVPPPPPNRMYPPPPPALPSSAPSGPPPPPPLSMAGSTAPPPPPPPPPPPGPPPPPGLPSDGDHQVPASSGNKAALLDQIREGAQLKKVEQNSRPVSCSGRDALLDQIRQGIQLKSVSDGQESTPPTPAPTSGIVGALMEVMQKRSKAIHSSDEDEDDDDEEDFQDDDEWED", "length": 501 }, "evidence": [ { "id": "A0A287ATX4", "url": "https://omabrowser.org/oma/group/A0A287ATX4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q12446-1", "protein_name": "Proline-rich protein LAS17", "gene_name": "LAS17", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MGLLNSSDKEIIKRALPKASNKIIDVTVARLYIAYPDKNEWQYTGLSGALALVDDLVGNTFFLKLVDINGHRGVIWDQELYVNFEYYQDRTFFHTFEMEECFAGLLFVDINEASHFLKRVQKRERYANRKTLLNKNAVALTKKVREEQKSQVVHGPRGESLIDNQRKRYNYEDVDTIPTTKHKAPPPPPPTAETFDSDQTSSFSDINSTTASAPTTPAPALPPASPEVRKEETHPKHSLPPLPNQFAPLPDPPQHNSPPQNNAPSQPQSNPFPFPIPEIPSTQSATNPFPFPVPQQQFNQAPSMGIPQQNRPLPQLPNRNNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRGPAPPPPPHRHVTSNTLNSAGGNSLLPQATGRRGPAPPPPPRASRPTPNVTMQQNPQQYNNSNRPFGYQTNSNMSSPPPPPVTTFNTLTPQMTAATGQPAVPLPQNTQAPSQATNVPVAPPPPPASLGQSQIPQSAPSAPIPPTLPSTTSAAPPPPPAFLTQQPQSGGAPAPPPPPQMPATSTSGGGSFAETTGDAGRDALLASIRGAGGIGALRKVDKSQLDKPSVLLQEARGESASPPAAAGNGGTPGGPPASLADALAAALNKRKTKVGAHDDMDNGDDW", "length": 633 }, "evidence": [ { "id": "A0A287ATX4", "url": "https://omabrowser.org/oma/group/A0A287ATX4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q91YD9-1", "protein_name": "Actin nucleation-promoting factor WASL", "gene_name": "Wasl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSGQQPPRRVTNVGSLLLTPQENESLFSFLGKKCVTMSSAVVQLYAADRNCMWAKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRKSEKRRDAPNGPNLPMATVDIKNPEITTNRFYGSQVNNISHTKEKKKGKAKKKRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDFIEKTGGVEAVKNELRRQAPPPPPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPGVVVPPPPPNRMYPPPPPALPSSAPSGPPPPPPPSMAGSTAPPPPPPPPPPPGPPPPPGLPSDGDHQVPAPSGNKAALLDQIREGAQLKKVEQNSRPVSCSGRDALLDQIRQGIQLKSVSDGQESTPPTPAPTSGIVGALMEVMQKRSKAIHSSDEDEDDDDEEDFEDDDEWED", "length": 501 }, "evidence": [ { "id": "A0A287ATX4", "url": "https://omabrowser.org/oma/group/A0A287ATX4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q95107-1", "protein_name": "Actin nucleation-promoting factor WASL", "gene_name": "WASL", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSGQQQPPPPRRVTNVGSLLLTPQENESLFTFLGKKCVTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRKSEKRRDPPNGPNLPMATVDIKNPEITTNRFYGPQINNISHTKEKKKGKAKKKRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDFIEKTGGVEAVKNELRRQAPPPPPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPGVGAPPPPPNRMYPPPLPALPSSAPSGPPPPPPPLSVSGSVAPPPPPPPPPPPGPPPPPGLPSDGDHQVPTPAGSKAALLDQIREGAQLKKVEQNSRPVSCSGRDALLDQIRQGIQLKSVTDAPESTPPAPAPTSGIVGALMEVMQKRSKAIHSSDEDEDEDDDEDFEDDDEWED", "length": 505 }, "evidence": [ { "id": "A0A287ATX4", "url": "https://omabrowser.org/oma/group/A0A287ATX4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9VAT0-1", "protein_name": "WASp, isoform B", "gene_name": "WASp", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSSGMRSQDGPRAKVNAASTLLTQEENEAVFKLLGKKCQTLNTAVVQIYKTEGSAHAHWKKRHTGVVCFVKDSAIRSYFMRAYCLIKNELIWEHEIYDGMEVVKSRPFLLTFEGSDGHVGLNFVSEEECDSFFRIVDATIETRNRKRQEKRNRQKSQQAPNAPLPQVQREPARPPPMQGGLSSTDGVQLRNNKINSVTLTPAPAPAQSKNFLSSSFGLGNNAKDKKRKVTKADISRPTNFVHLSHVGWDAQKGFDLAGNENDEVLNEFFVKAGVSEVELKDRDTRAFIYDFIQSNNVLASVKQYSVESPTETAAPMPPPVPTRHPSNGNQRTAPPLPPARQPPPAVPVTVPGAARAPPPPNRPPPISTAPPPPPVSAPVVAPPPPPPPPPAAVPPPPPPPMPVGEIPVITTTHAPTQAARPAAPAAPDPRNALMDAIRKGTQLKKVDTTALSTGSGDSRSDLMKDIRQGTVLKPAKERELGSQRNSDSGAGTDALADALRRALAARGNAIHSDEDETESSDNEGEWD", "length": 527 }, "evidence": [ { "id": "A0A287ATX4", "url": "https://omabrowser.org/oma/group/A0A287ATX4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "actin cap", "id": "GO:0030478", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030478", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "actin filament polymerization", "id": "GO:0030041", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030041", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "dendritic spine morphogenesis", "id": "GO:0060997", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060997", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "negative regulation of lymphocyte migration", "id": "GO:2000402", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000402", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "negative regulation of membrane tubulation", "id": "GO:1903526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903526", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "regulation of postsynapse organization", "id": "GO:0099175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099175", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX4" } ], "pmid": "" }, { "name": "actin filament organization", "id": "GO:0007015", "url": 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"table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AUE0-1", "uniprot_ac": "A0A287AUE0", "uniprot_id": "A0A287AUE0_PIG", "mass": { "chemical_mass": 101081.0, "monoisotopic_mass": 101081.0 }, "refseq": {}, "gene_names": [ { "name": "TMEM8B", "type": "recommended", "evidence": [ { "id": "A0A287AUE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE0" } ] } ], "protein_names": [ { "name": "Transmembrane protein 8B", "type": "synonym", "evidence": [ { "id": "A0A287AUE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AUE0", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM8B", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE0", "locus": { "chromosome": "1", "start_pos": 236584376, "end_pos": 236551434, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005325", "url": "https://www.ensembl.org/id/ENSSSCG00000005325" } ] } } ], "crossref": [ { "id": "A0A287AUE0", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AUE0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005325", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005325", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518051", "url": "https://www.ncbi.nlm.nih.gov/gene/100518051", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14319", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14319", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14319:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14319:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AUE0", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYF7", "url": "https://www.uniprot.org/uniprotkb/A0A287AYF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCS8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCS8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STB0", "url": "https://www.uniprot.org/uniprotkb/F1STB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STB0-1", "url": "https://www.uniprot.org/uniprotkb/F1STB0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQPLSRPLVPSRSGPWPPTPPSPHFPNRFQLRPGSPAQAPSQSQSLAWLPSQPLHLFHLLSQIPAQPLSQPHSQYLLKAGAQSLPLVQSPSQPLLPPHRLPLYKLQCPAQPNSLPQSLSSSLCLPKSLPLPTTLSHTLPFSQPRLRSGLQLPSALLLLLLLSVLGPGAGGLFLTDYSTCSPRKLSPFRSFASTELFHFHVPEDTFLAVWNLIIFKEQGGTFGDHCPDQSVTVYFRSGAPPVINPLHTHFPGDTAVPGVFSLTLSWTLPNRTSGIFNVSSPLPGDWFLAAHLPQAHGHISVKGLQDECQYLLQPQLIVRRLLDVAVLVPGRPSEQTLSPHNRSALYKVFVPSFTYRVSAQLVCVGGRGAPACPLTLRLRPKAPPLHNSSSVACGGASVCQLELALPPWGHWVYVRVETPSRGPGRTIRFQLCVRLQECPQPSLSRALVPGAAMNMPQSLGNQPLPPEPPSLGAPAEGPGATSPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNVSSLHQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLLTVSATSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGSVGFLLPPRAKTDHRVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS", "length": 924, "header": "tr|A0A287AUE0-1|A0A287AUE0_PIG Isoform 1 of Transmembrane protein 8B OS=Sus scrofa OX=9823 GN=TMEM8B PE=3 SV=2 CANONICAL=A0A287AUE0-1" }, "isoforms": [ { "isoform_ac": "A0A287AUE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE0/entry#A0A287AUE0-1", "sequence": { "sequence": "MAQPLSRPLVPSRSGPWPPTPPSPHFPNRFQLRPGSPAQAPSQSQSLAWLPSQPLHLFHLLSQIPAQPLSQPHSQYLLKAGAQSLPLVQSPSQPLLPPHRLPLYKLQCPAQPNSLPQSLSSSLCLPKSLPLPTTLSHTLPFSQPRLRSGLQLPSALLLLLLLSVLGPGAGGLFLTDYSTCSPRKLSPFRSFASTELFHFHVPEDTFLAVWNLIIFKEQGGTFGDHCPDQSVTVYFRSGAPPVINPLHTHFPGDTAVPGVFSLTLSWTLPNRTSGIFNVSSPLPGDWFLAAHLPQAHGHISVKGLQDECQYLLQPQLIVRRLLDVAVLVPGRPSEQTLSPHNRSALYKVFVPSFTYRVSAQLVCVGGRGAPACPLTLRLRPKAPPLHNSSSVACGGASVCQLELALPPWGHWVYVRVETPSRGPGRTIRFQLCVRLQECPQPSLSRALVPGAAMNMPQSLGNQPLPPEPPSLGAPAEGPGATSPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNVSSLHQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLLTVSATSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGSVGFLLPPRAKTDHRVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS", "length": 924, "header": "tr|A0A287AUE0-1|A0A287AUE0_PIG Isoform 1 of Transmembrane protein 8B OS=Sus scrofa OX=9823 GN=TMEM8B PE=3 SV=2 CANONICAL=A0A287AUE0-1" }, "locus": { "chromosome": "1", "start_pos": 236583061, "end_pos": 236551434, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042484.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042484.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047549.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047549.2" } ] } }, { "isoform_ac": "A0A287AYF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE0/entry#A0A287AYF7-1", "sequence": { "sequence": "MLPCWCLGDPQSKPSPPTIAQPCPKAPPLHNSSSVACGGASVCQLELALPPWGHWVYVRVETPSRGPGRTIRFQLCVRLQECPQPSLSRALVPGAAMNMPQSLGNQPLPPEPPSLGAPAEGPGATSPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNVSSLHQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLLTVSATSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGSVGFLLPPRAKTDHRVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS", "length": 568, "header": "tr|A0A287AYF7-1|A0A287AYF7_PIG Computationally mapped isoform of Transmembrane protein 8B OS=Sus scrofa OX=9823 GN=TMEM8B PE=3 SV=1 CANONICAL=A0A287AUE0-1" }, "locus": { "chromosome": "1", "start_pos": 236583061, "end_pos": 236565349, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063248.2", "url": "https://www.ensembl.org/id/ENSSSCT00000063248.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048977.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048977.2" } ] } }, { "isoform_ac": "A0A5G2QCS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE0/entry#A0A5G2QCS8-1", "sequence": { "sequence": "MNMPQSLGNQPLPPEPPSLGAPAEGPGATSPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNVSSLHQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLLTVSATSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGSVGFLLPPRAKTDHRVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS", "length": 472, "header": "tr|A0A5G2QCS8-1|A0A287AUE0_PIG Computationally mapped isoform of Transmembrane protein 8B OS=Sus scrofa OX=9823 GN=TMEM8B PE=3 SV=2 CANONICAL=A0A287AUE0-1" }, "locus": { "chromosome": "1", "start_pos": 236583061, "end_pos": 236566673, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086441.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086441.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061376.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061376.2" } ] } }, { "isoform_ac": "F1STB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE0/entry#F1STB0-1", "sequence": { "sequence": "MGHSAEAGGLFLTDYSTCSPRKLSPFRSFASTELFHFHVPEDTFLAVWNLIIFKEQGGTFGDHCPDQSVTVYFRSGAPPVINPLHTHFPGDTAVPGVFSLTLSWTLPNRTSGIFNVSSPLPGDWFLAAHLPQAHGHISVKGLQDECQYLLQPQLIVRRLLDVAVLVPGRPSEQTLSPHNRSALYKVFVPSFTYRVSAQLVCVGGRGAPACPLTLRLRPKAPPLHNSSSVACGGASVCQLELALPPWGHWVYVRVETPSRGPGRTIRFQLCVRLQECPQPSLSRALVPGAAMNMPQSLGNQPLPPEPPSLGAPAEGPGATSPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNVVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLLTVSATSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVVKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGSVGFLLPPRAKTDHRVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS", "length": 755, "header": "tr|F1STB0-1|A0A287AUE0_PIG Computationally mapped isoform of Transmembrane protein 8B OS=Sus scrofa OX=9823 GN=TMEM8B PE=3 SV=4 CANONICAL=A0A287AUE0-1" }, "locus": { "chromosome": "1", "start_pos": 236583061, "end_pos": 236553581, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005864.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005864.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005719.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005719.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 20, "start_aa": "Thr", "end_pos": 20, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr20", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCS8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCS8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUE0", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 341, "end_pos": 343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 544, "end_pos": 546, "annotation": "n_glycosylation_sequon" }, { "start_pos": 552, "end_pos": 554, "annotation": "n_glycosylation_sequon" }, { "start_pos": 624, "end_pos": 626, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AUE0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 924, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AUE0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AUE0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AUE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE0" }, { "id": "PS00022", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00022" }, { "id": "PS01186", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 661, "end_pos": 672, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 20 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 270, "end_pos": 272 }, { "start_pos": 277, "end_pos": 279 }, { "start_pos": 341, "end_pos": 343 }, { "start_pos": 387, "end_pos": 389 }, { "start_pos": 544, "end_pos": 546 }, { "start_pos": 552, "end_pos": 554 }, { "start_pos": 624, "end_pos": 626 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", 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{ "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AUZ6-1", "uniprot_ac": "A0A287AUZ6", "uniprot_id": "A0A287AUZ6_PIG", "mass": { "chemical_mass": 53430.0, "monoisotopic_mass": 53430.0 }, "refseq": {}, "gene_names": [ { "name": "SEC61A2", "type": "recommended", "evidence": [ { "id": "A0A287AUZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6" } ] } ], "protein_names": [ { "name": "SEC61 translocon subunit alpha 2", "type": "synonym", "evidence": [ { "id": "A0A287AUZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SEC61A2", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6", "locus": { "chromosome": "10", "start_pos": 59773852, "end_pos": 59817010, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011114", "url": "https://www.ensembl.org/id/ENSSSCG00000011114" } ] } } ], "crossref": [ { "id": "A0A287AUZ6", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AUZ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011114", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011114", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511831", "url": "https://www.ncbi.nlm.nih.gov/gene/100511831", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002208", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002208", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019561", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019561", "database": "InterPro", "categories": [ 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF10559", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AUZ6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8U8", "url": "https://www.uniprot.org/uniprotkb/A0A287B8U8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8U8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV37", "url": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5D0", "url": "https://www.uniprot.org/uniprotkb/F2Z5D0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5D0-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5D0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LB49", "url": "https://www.uniprot.org/uniprotkb/I3LB49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LB49-1", "url": "https://www.uniprot.org/uniprotkb/I3LB49-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "KEPSVILLLYITIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF", "length": 486, "header": "tr|A0A287AUZ6-1|A0A287AUZ6_PIG Isoform 1 of SEC61 translocon subunit alpha 2 OS=Sus scrofa OX=9823 GN=SEC61A2 PE=1 SV=3 CANONICAL=A0A287AUZ6-1" }, "isoforms": [ { "isoform_ac": "A0A287AUZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6/entry#A0A287AUZ6-1", "sequence": { "sequence": "KEPSVILLLYITIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF", "length": 486, "header": "tr|A0A287AUZ6-1|A0A287AUZ6_PIG Isoform 1 of SEC61 translocon subunit alpha 2 OS=Sus scrofa OX=9823 GN=SEC61A2 PE=1 SV=3 CANONICAL=A0A287AUZ6-1" }, "locus": { "chromosome": "10", "start_pos": 59815506, "end_pos": 59790970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052360.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052360.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047685.3", "url": "https://www.ensembl.org/id/ENSSSCP00000047685.3" } ] } }, { "isoform_ac": "A0A287B8U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6/entry#A0A287B8U8-1", "sequence": { "sequence": "LTVKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQDVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF", "length": 410, "header": "tr|A0A287B8U8-1|A0A287B8U8_PIG Computationally mapped isoform of SEC61 translocon subunit alpha 2 OS=Sus scrofa OX=9823 GN=SEC61A2 PE=1 SV=3 CANONICAL=A0A287AUZ6-1" }, "locus": { "chromosome": "10", "start_pos": 59814822, "end_pos": 59790970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059757.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059757.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052915.3", "url": "https://www.ensembl.org/id/ENSSSCP00000052915.3" } ] } }, { "isoform_ac": "A0A5G2QTQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6/entry#A0A5G2QTQ7-1", "sequence": { "sequence": "LTVKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRAYARATVTQDPSLVCDLHHSSRQCWILNPLSKARDPTRSLMVPSRICFLCATMGTPISSFLVFLGL", "length": 481, "header": "tr|A0A5G2QTQ7-1|A0A5G2QTQ7_PIG Computationally mapped isoform of SEC61 translocon subunit alpha 2 OS=Sus scrofa OX=9823 GN=SEC61A2 PE=1 SV=2 CANONICAL=A0A287AUZ6-1" }, "locus": { "chromosome": "10", "start_pos": 59814822, "end_pos": 59774125, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081925.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081925.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067538.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067538.2" } ] } }, { "isoform_ac": "A0A5G2QV37-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6/entry#A0A5G2QV37-1", "sequence": { "sequence": "MNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQVF", "length": 225, "header": "tr|A0A5G2QV37-1|A0A287AUZ6_PIG Computationally mapped isoform of SEC61 translocon subunit alpha 2 OS=Sus scrofa OX=9823 GN=SEC61A2 PE=1 SV=1 CANONICAL=A0A287AUZ6-1" }, "locus": { "chromosome": "10", "start_pos": 59799133, "end_pos": 59790927, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090152.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090152.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068000.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068000.1" } ] } }, { "isoform_ac": "A0A8W4FA95-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6/entry#A0A8W4FA95-1", "sequence": { "sequence": "MNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF", "length": 234, "header": "tr|A0A8W4FA95-1|A0A287AUZ6_PIG Computationally mapped isoform of SEC61 translocon subunit alpha 2 OS=Sus scrofa OX=9823 GN=SEC61A2 PE=1 SV=1 CANONICAL=A0A287AUZ6-1" }, "locus": { "chromosome": "10", "start_pos": 59799133, "end_pos": 59790970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092605.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092605.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076311.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076311.1" } ] } }, { "isoform_ac": "A0A8W4FEY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6/entry#A0A8W4FEY0-1", "sequence": { "sequence": "LTVKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF", "length": 476, "header": "tr|A0A8W4FEY0-1|A0A287AUZ6_PIG Computationally mapped isoform of SEC61 translocon subunit alpha 2 OS=Sus scrofa OX=9823 GN=SEC61A2 PE=1 SV=1 CANONICAL=A0A287AUZ6-1" }, "locus": { "chromosome": "10", "start_pos": 59814822, "end_pos": 59790970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094940.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094940.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077809.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077809.1" } ] } }, { "isoform_ac": "A0A8W4FFS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6/entry#A0A8W4FFS1-1", "sequence": { "sequence": "LTVKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRVCALHAQVPGFPFIVKCCNLSKFTFEAFFLYLTQKNQNLTQN", "length": 457, "header": "tr|A0A8W4FFS1-1|A0A287AUZ6_PIG Computationally mapped isoform of SEC61 translocon subunit alpha 2 OS=Sus scrofa OX=9823 GN=SEC61A2 PE=1 SV=1 CANONICAL=A0A287AUZ6-1" }, "locus": { "chromosome": "10", "start_pos": 59814822, "end_pos": 59793709, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101754.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101754.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078090.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078090.1" } ] } }, { "isoform_ac": "F2Z5D0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6/entry#F2Z5D0-1", "sequence": { "sequence": "MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF", "length": 476, "header": "tr|F2Z5D0-1|A0A287AUZ6_PIG Computationally mapped isoform of SEC61 translocon subunit alpha 2 OS=Sus scrofa OX=9823 GN=SEC61A2 PE=1 SV=1 CANONICAL=A0A287AUZ6-1" }, "locus": { "chromosome": "10", "start_pos": 59816863, "end_pos": 59790970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012163.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012163.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011853.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011853.2" } ] } }, { "isoform_ac": "I3LB49-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6/entry#I3LB49-1", "sequence": { "sequence": "LTVKFLEVIKPFCAVLPEIQKPERKIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF", "length": 454, "header": "tr|I3LB49-1|A0A287AUZ6_PIG Computationally mapped isoform of SEC61 translocon subunit alpha 2 OS=Sus scrofa OX=9823 GN=SEC61A2 PE=1 SV=4 CANONICAL=A0A287AUZ6-1" }, "locus": { "chromosome": "10", "start_pos": 59814822, "end_pos": 59790970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028326.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028326.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021268.4", "url": "https://www.ensembl.org/id/ENSSSCP00000021268.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV37", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV37" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511831", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511831", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ribosome binding", "id": "GO:0043022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043022", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AUZ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 486, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AUZ6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AUZ6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AUZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ6" }, { "id": "PF10559", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10559" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Translocon Sec61/SecY plug", "eco_id": "ECO_0000259", "start_pos": 50, "end_pos": 84, "start_aa": "Phe", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"A0A5G2R5M5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5M5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RN41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RN41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RN41-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RN41-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALWRAYQRALTAHPWKVQVLTAGSLMGLGDVISQQLVERRGLQEHQTGRTLTMVSLGCGFVGPVVGGWYKVLDRLIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGTLNGLSAQDNWAKLRRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL", "length": 176, "header": "tr|A0A287AZQ7-1|A0A287AZQ7_PIG Isoform 1 of Mitochondrial inner membrane protein Mpv17 OS=Sus scrofa OX=9823 GN=MPV17 PE=3 SV=1 CANONICAL=A0A287AZQ7-1" }, "isoforms": [ { "isoform_ac": "A0A286ZJK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZQ7/entry#A0A286ZJK0-1", "sequence": { "sequence": "TCYLIEFYEGPVVGGWYKVLDRLIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGTLNGLSAQDNWAKLRRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL", "length": 123, "header": "tr|A0A286ZJK0-1|A0A287AZQ7_PIG Computationally mapped isoform of Mitochondrial inner membrane protein Mpv17 OS=Sus scrofa OX=9823 GN=MPV17 PE=3 SV=1 CANONICAL=A0A287AZQ7-1" }, "locus": { "chromosome": "3", "start_pos": 111833024, "end_pos": 111821690, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046103.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046103.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031756.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031756.2" } ] } }, { "isoform_ac": "A0A287AQ51-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZQ7/entry#A0A287AQ51-1", "sequence": { "sequence": "MALWRAYQRALTAHPWKVQVLTAGSLMGLGDVISQQLVERRGLQEHQTGRTLTMVSLGCGFVGPVVGGWYKVLDRLIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGTLNGLSAQDNWAKLRRLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL", "length": 165, "header": "tr|A0A287AQ51-1|A0A287AZQ7_PIG Computationally mapped isoform of Mitochondrial inner membrane protein Mpv17 OS=Sus scrofa OX=9823 GN=MPV17 PE=3 SV=1 CANONICAL=A0A287AZQ7-1" }, "locus": { "chromosome": "3", "start_pos": 111833024, "end_pos": 111823606, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039856.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039856.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046024.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046024.1" } ] } }, { "isoform_ac": "A0A287AZQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZQ7/entry#A0A287AZQ7-1", "sequence": { "sequence": "MALWRAYQRALTAHPWKVQVLTAGSLMGLGDVISQQLVERRGLQEHQTGRTLTMVSLGCGFVGPVVGGWYKVLDRLIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGTLNGLSAQDNWAKLRRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL", "length": 176, "header": "tr|A0A287AZQ7-1|A0A287AZQ7_PIG Isoform 1 of Mitochondrial inner membrane protein Mpv17 OS=Sus scrofa OX=9823 GN=MPV17 PE=3 SV=1 CANONICAL=A0A287AZQ7-1" }, "locus": { "chromosome": "3", "start_pos": 111833024, "end_pos": 111823606, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053287.2", "url": "https://www.ensembl.org/id/ENSSSCT00000053287.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049632.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049632.1" } ] } }, { "isoform_ac": "A0A5G2R5M5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZQ7/entry#A0A5G2R5M5-1", "sequence": { "sequence": "MALWRAYQRALTAHPWKVQVLTAGSLMGLGDVISQQLVERRGLQEHQTGRTLTMVSLGCGFVDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL", "length": 113, "header": "tr|A0A5G2R5M5-1|A0A287AZQ7_PIG Computationally mapped isoform of Mitochondrial inner membrane protein Mpv17 OS=Sus scrofa OX=9823 GN=MPV17 PE=3 SV=1 CANONICAL=A0A287AZQ7-1" }, "locus": { "chromosome": "3", "start_pos": 111833024, "end_pos": 111823606, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090951.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090951.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072546.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072546.1" } ] } }, { "isoform_ac": "A0A5G2RN41-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZQ7/entry#A0A5G2RN41-1", "sequence": { "sequence": "MGEWFFLEKRRRLYPLASSHVGQRSATWSVNAGALCPQVARSLMGLGDVISQQLVERRGLQEHQTGRTLTMVSLGCGFVGPVVGGWYKVLDRLIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGTLNGLSAQDNWAKLRRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL", "length": 193, "header": "tr|A0A5G2RN41-1|A0A5G2RN41_PIG Computationally mapped isoform of Mitochondrial inner membrane protein Mpv17 OS=Sus scrofa OX=9823 GN=MPV17 PE=3 SV=1 CANONICAL=A0A287AZQ7-1" }, "locus": { "chromosome": "3", "start_pos": 111833024, "end_pos": 111825981, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068104.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068104.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074165.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074165.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZJK0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJK0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110260044", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260044", "resource": "KEGG Pathway" }, { "id": "R-SSC-9033241", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033241", "resource": "Reactome", "description": "Peroxisomal protein import" } ], "orthologs": [ { "uniprot_canonical_ac": "P19258-1", "protein_name": "Mitochondrial inner membrane protein Mpv17", "gene_name": "Mpv17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALWRAYQRALAAHPWKVQVLTAGSLMGVGDMISQQLVERRGLQQHQAGRTLTMVSLGCGFVGPVVGGWYKVLDHLIPGTTKVHALKKMLLDQGGFAPCFLGCFLPLVGILNGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAIVWNSYLSWKAHQF", "length": 176 }, "evidence": [ { "id": "A0A287AZQ7", "url": "https://omabrowser.org/oma/group/A0A287AZQ7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P39210-1", "protein_name": "Mitochondrial inner membrane protein Mpv17", "gene_name": "MPV17", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCGFVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNWAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL", "length": 176 }, "evidence": [ { "id": "A0A287AZQ7", "url": "https://omabrowser.org/oma/group/A0A287AZQ7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q2KIN6-1", "protein_name": "Mitochondrial inner membrane protein Mpv17", "gene_name": "MPV17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALWRAYQRALTAHPWKVQVLTAGSLMGLGDVISQQLVERRGLQAHQAGRTLTMASLGCGFVGPVVGGWYRVLDRLIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGTLNGLSAQDNWAKLQRDFPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL", "length": 176 }, "evidence": [ { "id": "A0A287AZQ7", "url": "https://omabrowser.org/oma/group/A0A287AZQ7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5BK62-1", "protein_name": "Mitochondrial inner membrane protein Mpv17", "gene_name": "Mpv17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQQHQTGRTLTMASLGCGFVGPVVGGWYRVLDHLIPGTTKVNALKKMLLDQGGFAPCFLGCFLPLVGVLNGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVVWNSYLSWKAHQL", "length": 176 }, "evidence": [ { "id": "A0A287AZQ7", "url": "https://omabrowser.org/oma/group/A0A287AZQ7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5TZ51-1", "protein_name": "Mitochondrial inner membrane protein Mpv17", "gene_name": "mpv17", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAGLWRSYQALMAKHPWKVQIITAGSLVGVGDVISQQLIERRGLANHNARRTAKMMSIGFFFVGPVVGGWYKVLDKLVTGGTKSAALKKMLVDQVGFAPCFLGAFLGITGTLNGLTVEENVAKLQRDYTDALISNYYLWPPVQIANFYFIPLHHRLAVVQIVAVVWNSYLSWKANKM", "length": 177 }, "evidence": [ { "id": "A0A287AZQ7", "url": "https://omabrowser.org/oma/group/A0A287AZQ7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9LV46-1", "protein_name": "Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MLKLWRWYQRCLTVHPVKTQVISSGFLWGFGDVTAQYITHSTAKRRLLRLTETNKDADADAEIKVKWKQDAEFKVNWKRVAITSMFGFGFVGPVGHFWYEGLDKFIKLKLRYVPKSTRFVAAKVAMDGLIFGPVDLLVFFTYMGFATGKNTAEVKEGLKRDFLPALALEGGAWPLLQIANFRYVPVQYQLLYVNIFCLVDSAFLSWVEQQKDAAWKQWFTSSFQPLKERGGQGGV", "length": 235 }, "evidence": [ { "id": "A0A287AZQ7", "url": "https://omabrowser.org/oma/group/A0A287AZQ7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": 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"url": "https://www.uniprot.org/uniprotkb/A0A287AZQ7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "channel activity", "id": "GO:0015267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015267", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZQ7", "url": "https://www.uniprot.org/uniprotkb/A0A287AZQ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AZQ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 176, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AZQ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AZQ7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": 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"https://www.uniprot.org/uniprotkb/A0A287AV17/entry#A0A286ZM41-1", "sequence": { "sequence": "MAPAASKLRTEAGLGALPRRALAQYLRLLRLYPVLTKAATSGILSALGNFLAQMIEKKQKKESCSQKLDVNGPLRYAIYGFFFTGPLSHFFYLFLEHWIPPEAPWASVQRLLLDRLLFAPAFLLLFFLIMNFLEGKDFAAFVAKMKRGFWPALQMNWRVWTPVQFINVNYVPLQGTGSLRALCRADPSPRPHGAPAPVGTTPEGGSTGTPREHPPPSPPEVGNGRHPGPAAPDREEH", "length": 237, "header": "tr|A0A286ZM41-1|A0A287AV17_PIG Computationally mapped isoform of Peroxisomal membrane protein 2 OS=Sus scrofa OX=9823 GN=PXMP2 PE=3 SV=1 CANONICAL=A0A287AV17-1" }, "locus": { "chromosome": "14", "start_pos": 22797812, "end_pos": 22780840, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063852.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063852.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032691.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032691.2" } ] } }, { "isoform_ac": "A0A287AV17-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV17/entry#A0A287AV17-1", "sequence": { "sequence": "MAPAASKLRTEAGLGALPRRALAQYLRLLRLYPVLTKAATSGILSALGNFLAQMIEKKQKKESCSQKLDVNGPLRYAIYGFFFTGPLSHFFYLFLEHWIPPEAPWASVQRLLLDRLLFAPAFLLLFFLIMNFLEGKDFAAFVAKMKRGFWPALQMNWRVWTPVQFINVNYVPLQFRVLFANVVALFWYAYLASLGK", "length": 196, "header": "tr|A0A287AV17-1|A0A287AV17_PIG Isoform 1 of Peroxisomal membrane protein 2 OS=Sus scrofa OX=9823 GN=PXMP2 PE=3 SV=1 CANONICAL=A0A287AV17-1" }, "locus": { "chromosome": "14", "start_pos": 22797812, "end_pos": 22784840, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039545.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039545.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047710.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047710.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZM41", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM41" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110256846", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256846", "resource": "KEGG Pathway" }, { "id": "R-SSC-9603798", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9603798", "resource": "Reactome", "description": 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"uniprot_canonical_ac": "A0A287AVW4-1", "uniprot_ac": "A0A287AVW4", "uniprot_id": "A0A287AVW4_PIG", "mass": { "chemical_mass": 108468.0, "monoisotopic_mass": 108468.0 }, "refseq": {}, "gene_names": [ { "name": "TRAK1", "type": "recommended", "evidence": [ { "id": "A0A287AVW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVW4" } ] } ], "protein_names": [ { "name": "Trafficking kinesin protein 1", "type": "synonym", "evidence": [ { "id": "A0A287AVW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVW4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AVW4", "url": "https://www.uniprot.org/uniprotkb/A0A287AVW4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRAK1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVW4", "locus": { "chromosome": "13", "start_pos": 25935828, "end_pos": 25774250, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011278", "url": "https://www.ensembl.org/id/ENSSSCG00000011278" } ] } } ], "crossref": [ { "id": "A0A287AVW4", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AVW4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011278", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011278", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522277", "url": "https://www.ncbi.nlm.nih.gov/gene/100522277", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006933", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006933", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A287APB7", "url": "https://www.orthodb.org/?gene=A0A287APB7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15751", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15751", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15751:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15751:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04849", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04849", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12448", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12448", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013419", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013419", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013425", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013425", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZWJ6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZWJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZWJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZWJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A0U8", "url": "https://www.uniprot.org/uniprotkb/A0A287A0U8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A0U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0U8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APB7", "url": "https://www.uniprot.org/uniprotkb/A0A287APB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APB7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVW4", "url": "https://www.uniprot.org/uniprotkb/A0A287AVW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVW4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGN1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGN1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJP2", "url": "https://www.uniprot.org/uniprotkb/F1SJP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJP2-1", "url": "https://www.uniprot.org/uniprotkb/F1SJP2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDATALHDDALANSVPPSEACNHAVLACSPGIPEEHYVSEAVEDAPSSRGYRDACTITDVCNSTDLPEVEIISLLEEQLPHYKLRADTIYGYDHDDWLHTPVISPDANIDLTTEQIEETLKYFLLCAERVGQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEACQLKTETITYEEKEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPNTTSRRYHSLGLFPMDSLAAEIEGTMRKELQLEEPESPDIAHQKRVFETVRNINQVVKQRSLTPSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYGSDVGNVVLDNKTNSIILEAESADLGNGERSKKPGTPGTPGSHDLETALRRLSLRRENYLSERRFFEEEQERKLRELAEKGELLSGSLTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYLPEKLQIVKPLEGSATLHHWQQLAQPHLGGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEEDDTGDHISLPGLATSTPVQHPETSAHHPGKCMSQTNSTFTFTTCRILHPSDELTRVTPSLNSAPTPACGSASHLKSTPVATPCTPRRLSLAESFTNVRESTTTMSTSLGLVWLLKERGISAAVYDPQSWDRAGRGSLLRSGTPRMAVIPSTPPNSPMQTPTSSSPSFEFKCTSPPYDNFLASKPASSILREVREKKVVRSSESQTDVSVSNLNLVDKVRRFGVAKVVNSGRAHVPTLTEDQGPLLCGPPGPAQALVPGGLVPEGLPLGCPTVTSAIGGLQLNSGIRRNRSFPTMVGSSMQMKAPVTLTSGILMGAKLPKQTSLR", "length": 982, "header": "tr|A0A287AVW4-1|A0A287AVW4_PIG Isoform 1 of Trafficking kinesin protein 1 OS=Sus scrofa OX=9823 GN=TRAK1 PE=3 SV=4 CANONICAL=A0A287AVW4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZWJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVW4/entry#A0A286ZWJ6-1", "sequence": { "sequence": "MALVFQFGQPARAQPLPGLCPGSLIRTGSCDVCNSTDLPEVEIISLLEEQLPHYKLRADTIYGYDHDDWLHTPVISPDANIDLTTEQIEETLKYFLLCAERVGQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEACQLKTETITYEEKEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPNTTSRRYHSLGLFPMDSLAAEIEGTMRKELQLEEPESPDIAHQKRVFETVRNINQVVKQRSLTPSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYGSDVGNVVLDNKTNSIILEAESADLGNGERSKKPGTPGTPGSHDLETALRRLSLRRENYLSERRFFEEEQERKLRELAEKGELLSGSLTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYLPEKLQIVKPLEGSATLHHWQQLAQPHLGGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEEDDTGDHISLPGLATSTPVQHPETSAHHPGKCMSQTNSTFTFTTCRILHPSDELTRVTPSLNSAPTPACGSASHLKSTPVATPCTPRRLSLAESFTNVRESTTTMSTSLGLVWLLKERGISAAVYDPQSWDRAGRGSLLRSGTPRMAVIPSTPPNSPMQTPTSSSPSFEFKCTSPPYDNFLASKPASSILREVREKKVVRSSESQTDVSVSNLNLVDKVRRFGVAKVVNSGRAHVPTLTEDQGPLLCGPPGPAQALVPGGLVPEGLPLGCPTVTSAIGGLQLNSGIRRNRSFPTMVGSSMQMKAPVTLTSGILMGAKLPKQTSLR", "length": 954, "header": "tr|A0A286ZWJ6-1|A0A287AVW4_PIG Computationally mapped isoform of Trafficking kinesin protein 1 OS=Sus scrofa OX=9823 GN=TRAK1 PE=3 SV=2 CANONICAL=A0A287AVW4-1" }, "locus": { "chromosome": "13", "start_pos": 25932665, "end_pos": 25833307, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039992.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039992.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035821.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035821.2" } ] } }, { "isoform_ac": "A0A287A0U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVW4/entry#A0A287A0U8-1", "sequence": { "sequence": "MTKTYNDIDAVTRLLEEKERDLELAARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEACQLKTETITYEEKEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPNTTSRRYHSLGLFPMDSLAAEIEGTMRKELQLEEPESPDIAHQKRVFETVRNINQVVKQRSLTPSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYGSDVGNVVLDNKTNSIILEAESADLGNGERSKKPGTPGTPGSHDLETALRRLSLRRENYLSERRFFEEEQERKLRELAEKGELLSGSLTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYLPEKLQIVKPLEGSATLHHWQQLAQPHLGGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEEDDTGDHISLPGLATSTPVQHPETSAHHPGKCMSQTNSTFTFTTCRILHPSDELTRVTPRSCEEDDEAAPGPVELRADVGQRVSPQARQGP", "length": 616, "header": "tr|A0A287A0U8-1|A0A287AVW4_PIG Computationally mapped isoform of Trafficking kinesin protein 1 OS=Sus scrofa OX=9823 GN=TRAK1 PE=3 SV=2 CANONICAL=A0A287AVW4-1" }, "locus": { "chromosome": "13", "start_pos": 25931872, "end_pos": 25890074, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046284.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046284.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037538.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037538.2" } ] } }, { "isoform_ac": "A0A287APB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVW4/entry#A0A287APB7-1", "sequence": { "sequence": "MQKFIEADYYELDWYYEECSDVLCAERVGQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEACQLKTETITYEEKEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPNTTSRRYHSLGLFPMDSLAAEIEGTMRKELQLEEPESPDIAHQKRVFETVRNINQVVKQRSLTPSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYGSDVGNVVLDNKTNSIILEAESADLGNGERSKKPGTPGTPGSHDLETALRRLSLRRENYLSERRFFEEEQERKLRELAEKGELLSGSLTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYLPEKLQIVKPLEGSATLHHWQQLAQPHLGGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEEDDTGDHISLPGLATSTPVQHPETSGERSRARVTVSGSRSYPSRPQASPEEMQEPPAAEKEEEEEGSGEGTAISPVNLAPLPEAEFRAILTSVPSTIRSASLSVASARLCG", "length": 666, "header": "tr|A0A287APB7-1|A0A287AVW4_PIG Computationally mapped isoform of Trafficking kinesin protein 1 OS=Sus scrofa OX=9823 GN=TRAK1 PE=3 SV=2 CANONICAL=A0A287AVW4-1" }, "locus": { "chromosome": "13", "start_pos": 25919886, "end_pos": 25871326, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050335.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050335.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045905.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045905.2" } ] } }, { "isoform_ac": "A0A287AVW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVW4/entry#A0A287AVW4-1", "sequence": { "sequence": "MDATALHDDALANSVPPSEACNHAVLACSPGIPEEHYVSEAVEDAPSSRGYRDACTITDVCNSTDLPEVEIISLLEEQLPHYKLRADTIYGYDHDDWLHTPVISPDANIDLTTEQIEETLKYFLLCAERVGQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEACQLKTETITYEEKEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPNTTSRRYHSLGLFPMDSLAAEIEGTMRKELQLEEPESPDIAHQKRVFETVRNINQVVKQRSLTPSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYGSDVGNVVLDNKTNSIILEAESADLGNGERSKKPGTPGTPGSHDLETALRRLSLRRENYLSERRFFEEEQERKLRELAEKGELLSGSLTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYLPEKLQIVKPLEGSATLHHWQQLAQPHLGGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEEDDTGDHISLPGLATSTPVQHPETSAHHPGKCMSQTNSTFTFTTCRILHPSDELTRVTPSLNSAPTPACGSASHLKSTPVATPCTPRRLSLAESFTNVRESTTTMSTSLGLVWLLKERGISAAVYDPQSWDRAGRGSLLRSGTPRMAVIPSTPPNSPMQTPTSSSPSFEFKCTSPPYDNFLASKPASSILREVREKKVVRSSESQTDVSVSNLNLVDKVRRFGVAKVVNSGRAHVPTLTEDQGPLLCGPPGPAQALVPGGLVPEGLPLGCPTVTSAIGGLQLNSGIRRNRSFPTMVGSSMQMKAPVTLTSGILMGAKLPKQTSLR", "length": 982, "header": "tr|A0A287AVW4-1|A0A287AVW4_PIG Isoform 1 of Trafficking kinesin protein 1 OS=Sus scrofa OX=9823 GN=TRAK1 PE=3 SV=4 CANONICAL=A0A287AVW4-1" }, "locus": { "chromosome": "13", "start_pos": 25932665, "end_pos": 25831062, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053519.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053519.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048008.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048008.3" } ] } }, { "isoform_ac": "A0A287BGN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVW4/entry#A0A287BGN1-1", "sequence": { "sequence": "MTKTYNDIDAVTRLLEEKERDLELAARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEACQLKTETITYEEKEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPNTTSRRYHSLGLFPMDSLAAEIEGTMRKELQLEEPESPDIAHQKRVFETVRNINQVVKQRSLTPSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYGSDVGNVVLDNKTNSIILEAESADLGNGERSKKPGTPGTPGSHDLETALRRLSLRRENYLSERRFFEEEQERKLRELAEKGELLSGSLTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYLPEKLQIVKPLEGDHRGPRPLSALLSDSLWSLIHHRKTGNLCNAYSFFFRDSHPRCWFEFL", "length": 526, "header": "tr|A0A287BGN1-1|A0A287BGN1_PIG Computationally mapped isoform of Trafficking kinesin protein 1 OS=Sus scrofa OX=9823 GN=TRAK1 PE=3 SV=1 CANONICAL=A0A287AVW4-1" }, "locus": { "chromosome": "13", "start_pos": 25914212, "end_pos": 25890074, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054966.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054966.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055747.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055747.1" } ] } }, { "isoform_ac": "F1SJP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVW4/entry#F1SJP2-1", "sequence": { "sequence": "MSLRDLGGEEECFEYDCQDEETKPTHEQPETLDLLEEVLCAERVGQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEACQLKTETITYEEKEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPNTTSRRYHSLGLFPMDSLAAEIEGTMRKELQLEEPESPDIAHQKRVFETVRNINQVVKQRSLTPSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYGSDVGNVVLDNKTNSIILEAESADLGNGERSKKPGTPGTPGSHDLETALRRLSLRRENYLSERRFFEEEQERKLRELAEKGELLSGSLTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYLPEKLQIVKPLEGSATLHHWQQLAQPHLGGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEEDDTGDHISLPGLATSTPVQHPETSAHHPGKCMSQTNSTFTFTTCRILHPSDELTRVTPSLNSAPTPACGSASHLKSTPVATPCTPRRLSLAESFTNVRESTTTMSTSLGLVWLLKERGISAAVYDPQSWDRAGRGSLLRSGTPRMAVIPSTPPNSPMQTPTSSSPSFEFKCTSPPYDNFLASKPASSILREVREKKVVRSSESQTDVSVSNLNLVDKVRRFGVAKVVNSGRAHVPTLTEDQGPLLCGPPGPAQALVPGGLVPEGLPLGCPTVTSAIGGLQLNSGIRRNRSFPTMVGSSMQMKAPVTLTSGILMGAKLPKQTSLR", "length": 896, "header": "tr|F1SJP2-1|A0A287AVW4_PIG Computationally mapped isoform of Trafficking kinesin protein 1 OS=Sus scrofa OX=9823 GN=TRAK1 PE=3 SV=4 CANONICAL=A0A287AVW4-1" }, "locus": { "chromosome": "13", "start_pos": 25932665, "end_pos": 25879567, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012347.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012347.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012024.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012024.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 517, "start_aa": "Thr", "end_pos": 517, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr517", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 723, "start_aa": "Thr", "end_pos": 723, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr723", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJP2", "url": "https://www.uniprot.org/uniprotkb/F1SJP2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9013419", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013419", "resource": "Reactome", "description": "RHOT2 GTPase cycle" }, { "id": "R-SSC-9013425", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013425", "resource": "Reactome", "description": "RHOT1 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "mitochondrion", "id": 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"ENSSSCP00000037920.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037920.1" } ] } }, { "isoform_ac": "A0A287AUY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUY1/entry#A0A287AUY1-1", "sequence": { "sequence": "MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSADKQRALEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPANLERPVRYIRKPIDYTILDDIGHGVKWLLRFKVSTQNMKMGGLPRTTPPTQKPPSPPMSGKGTLGRHSPYRTLEPVRPPVVPNDYVPSPTRNMAPSQQSPVRTASVNQRNRTYSSSGSSGGSHPSSRSSSRENSGSGSVGVPIAVPTPSPPSVFPAPAGSAGTPPLPATSASAPAPLVPATVPSSIAPDAAAGGAQTLADGFTSPTPPVVSSTPPTGHPVQFYSMNRPATRHTPPTIGGSLPYRRPPSITSQTSLQNQMNGGPFYSQNPVSDAPPPPPPVEEPVFDESPPPPPPPEDYEEEEAAVVEYSDPYAEEDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESIMHYSE", "length": 513, "header": "tr|A0A287AUY1-1|A0A287AUY1_PIG Isoform 1 of Abl interactor 2 OS=Sus scrofa OX=9823 GN=ABI2 PE=1 SV=1 CANONICAL=A0A287AUY1-1" }, "locus": { "chromosome": "15", "start_pos": 106895787, "end_pos": 106776931, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053691.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053691.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047668.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047668.1" } ] } }, { "isoform_ac": "A0A287B8G8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUY1/entry#A0A287B8G8-1", "sequence": { "sequence": "MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSADKQRALEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPANLERPVRYIRKPIDYTILDDIGHGVKVRSHPSSRSSSRENSGSGSVGVPIAVPTPSPPSVFPAPAGSAGTPPLPATSASAPAPLVPATVPSSIAPDAAAGGAQTLADGFTSPTPPVVSSTPPTGHPVQFYSMNRPATRHTPPTIGGSLPYRRPPSITSQTSLQNQMNGGPFYSQNPVSLAPPPPSILQVTPQLPLMGFVARVQENISDAPPPPPPVEEPVFDESPPPPPPPEDYEEEEAAVVEYSDPYAEEDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESIMHYSE", "length": 449, "header": "tr|A0A287B8G8-1|A0A287B8G8_PIG Computationally mapped isoform of Abl interactor 2 OS=Sus scrofa OX=9823 GN=ABI2 PE=1 SV=2 CANONICAL=A0A287AUY1-1" }, "locus": { "chromosome": "15", "start_pos": 106895787, "end_pos": 106776931, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049709.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049709.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052377.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052377.2" } ] } }, { "isoform_ac": "A0A287BPV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUY1/entry#A0A287BPV8-1", "sequence": { "sequence": "MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSADKQRALEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPANLERPVRYIRKPIDYTILDDIGHGVKWLLRFKVSTQNMKMGGLPRTTPPTQKPPSPPMSGKGTLGSSGSSGGSHPSSRSSSRENSGSGSVGVPIAVPTPSPPSVFPAPAGSAGTPPLPATSASAPAPLVPATVPSSIAPDAAAGGAQTLADGFTSPTPPVVSSTPPTGHPVQFYSMNRPATRHTPPTIGGSLPYRRPPSITSQTSLQNQMNGGPFYSQNPVSLAPPPPSILQVTPQLPLMGFVARVQENISDAPPPPPPVEEPVFDESPPPPPPPEDYEEEEAAVVEYSDPYAEEDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESIMHYSE", "length": 493, "header": "tr|A0A287BPV8-1|A0A287BPV8_PIG Computationally mapped isoform of Abl interactor 2 OS=Sus scrofa OX=9823 GN=ABI2 PE=1 SV=1 CANONICAL=A0A287AUY1-1" }, "locus": { "chromosome": "15", "start_pos": 106895787, "end_pos": 106776931, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052536.2", "url": "https://www.ensembl.org/id/ENSSSCT00000052536.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058653.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058653.1" } ] } }, { "isoform_ac": "A0A287BSQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUY1/entry#A0A287BSQ3-1", "sequence": { "sequence": "MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSADKQRALEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPANLERPVRYIRKPIDYTILDDIGHGVKVSIIFVSTQNMKMGGLPRTTPPTQKPPSPPMSGKGTLGRHSPYRTLEPVRPPVVPNDYVPSPTRNMAPSQQSPVRTASVNQRNRTYSSSGSSGGSHPSSRSSSRENSGSGSVGVPIAVPTPSPPSVFPAPAGSAGTPPLPATSASAPAPLVPATVPSSIAPDAAAGGAQTLADGFTSPTPPVVSSTPPTGHPVQFYSMNRPATRHTPPTIGGSLPYRRPPSITSQTSLQNQMNGGPFYSQNPVSLAPPPPSILQVTPQLPLMGFVARVQENISDAPPPPPPVEEPVFDESPPPPPPPEDYEEEEAAVVEYSDPYAEEDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESIMHYSE", "length": 541, "header": "tr|A0A287BSQ3-1|A0A287BSQ3_PIG Computationally mapped isoform of Abl interactor 2 OS=Sus scrofa OX=9823 GN=ABI2 PE=1 SV=2 CANONICAL=A0A287AUY1-1" }, "locus": { "chromosome": "15", "start_pos": 106895787, "end_pos": 106776931, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052580.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052580.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059554.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059554.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2E5", "url": "https://www.uniprot.org/uniprotkb/A0A287A2E5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514879", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514879", "resource": "KEGG Pathway" }, { "id": "R-SSC-2029482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "resource": "Reactome", "description": "Regulation of actin dynamics for phagocytic cup formation" }, { "id": "R-SSC-4420097", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4420097", "resource": "Reactome", "description": "VEGFA-VEGFR2 Pathway" }, { "id": "R-SSC-5663213", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663213", "resource": "Reactome", "description": "RHO GTPases Activate WASPs and WAVEs" }, { "id": "R-SSC-9013149", "name": "", "url": 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"https://www.ebi.ac.uk/interpro/entry/IPR000731", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46022", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46022", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46022:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46022:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12349", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12349", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27572", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27572", "database": 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"https://www.uniprot.org/uniprotkb/A0A287BLE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LVF2", "url": "https://www.uniprot.org/uniprotkb/I3LVF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LVF2-1", "url": "https://www.uniprot.org/uniprotkb/I3LVF2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTTEALRQHLDSALQASRVHVYMYKQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLQWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNTTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQTMFQLMTPKQMYEHFKGYEYVSHISWNEDKAAAILEAWQRTYVEVVHQSVAQNSTQKVLSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTSPCVSRVIQVEPQAYTETHDNTRYSPPPPYSSHSFAHETQITMQSTVQLRTEYDPHTHVYYTTAEPRSEISVQPVTLAQDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPPCTKWTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFSNVKYVMLEENKQLPKMWLHYFRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKRRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICNNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLSISVVLACTFLVCAVFLLNPWTAGIIVTVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGLNRLPTPSPEPPPSVVRFAVPPSHANNGSDSSDSEYSSQTTVSGISEELRAYEAQQGTGGPAHQVIVEATENPVFARSTVVHPEPRHHPPPNPRQQPHRDSGSLPPGRPGQQPRRDPSREGSRPPPYRPRRDAFEISTEGHSGPSHRDRAGPRGARSHNPRHSAFTTTGGSAPGYCQPITTVTASASVTVAVHPPPAPGSSRNPRGGLCPGYEGYPETDPGLFEDPHVPFNVRCERRDSKVEVIELQDVECEERPRGSGSN", "length": 1383, "header": "tr|A0A287AT85-1|A0A287AT85_PIG Isoform 1 of Patched 1 OS=Sus scrofa OX=9823 GN=PTCH1 PE=3 SV=3 CANONICAL=A0A287AT85-1" }, "isoforms": [ { "isoform_ac": "A0A287AT85-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT85/entry#A0A287AT85-1", "sequence": { "sequence": "MGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTTEALRQHLDSALQASRVHVYMYKQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLQWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNTTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQTMFQLMTPKQMYEHFKGYEYVSHISWNEDKAAAILEAWQRTYVEVVHQSVAQNSTQKVLSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTSPCVSRVIQVEPQAYTETHDNTRYSPPPPYSSHSFAHETQITMQSTVQLRTEYDPHTHVYYTTAEPRSEISVQPVTLAQDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPPCTKWTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFSNVKYVMLEENKQLPKMWLHYFRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKRRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICNNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLSISVVLACTFLVCAVFLLNPWTAGIIVTVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGLNRLPTPSPEPPPSVVRFAVPPSHANNGSDSSDSEYSSQTTVSGISEELRAYEAQQGTGGPAHQVIVEATENPVFARSTVVHPEPRHHPPPNPRQQPHRDSGSLPPGRPGQQPRRDPSREGSRPPPYRPRRDAFEISTEGHSGPSHRDRAGPRGARSHNPRHSAFTTTGGSAPGYCQPITTVTASASVTVAVHPPPAPGSSRNPRGGLCPGYEGYPETDPGLFEDPHVPFNVRCERRDSKVEVIELQDVECEERPRGSGSN", "length": 1383, "header": "tr|A0A287AT85-1|A0A287AT85_PIG Isoform 1 of Patched 1 OS=Sus scrofa OX=9823 GN=PTCH1 PE=3 SV=3 CANONICAL=A0A287AT85-1" }, "locus": { "chromosome": "10", "start_pos": 26699601, "end_pos": 26627624, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063533.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063533.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047309.3", "url": "https://www.ensembl.org/id/ENSSSCP00000047309.3" } ] } }, { "isoform_ac": "A0A287BLE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT85/entry#A0A287BLE6-1", "sequence": { "sequence": "MFNPQLMIQTPKEEGANVLTTEALRQHLDSALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLQWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNTTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQTMFQLMTPKQMYEHFKGYEYVSHISWNEDKAAAILEAWQRTYVEVVHQSVAQNSTQKVLSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTSPCVSRVIQVEPQAYTETHDNTRYSPPPPYSSHSFAHETQITMQSTVQLRTEYDPHTHVYYTTAEPRSEISVQPVTLAQDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPPCTKWTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFSNVKYVMLEENKQLPKMWLHYFRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKRRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICNNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLSISVVLACTFLVCAVFLLNPWTAGIIVTVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGLNRLPTPSPEPPPSVVRFAVPPSHANNGSDSSDSEYSSQTTVSGISEELRAYEAQQGTGGPAHQVIVEATENPVFARSTVVHPEPRHHPPPNPRQQPHRDSGSLPPGRPGQQPRRDPSREGSRPPPYRPRRDAFEISTEGHSGPSHRDRAGPRGARSHNPRHSAFTTTGGSAPGYCQPITTVTASASVTVAVHPPPAPGSSRNPRGGLCPGYEGYPETDPGLFEDPHVPFNVRCERRDSKVEVIELQDVECEERPRGSGSN", "length": 1266, "header": "tr|A0A287BLE6-1|A0A287BLE6_PIG Computationally mapped isoform of Patched 1 OS=Sus scrofa OX=9823 GN=PTCH1 PE=3 SV=2 CANONICAL=A0A287AT85-1" }, "locus": { "chromosome": "10", "start_pos": 26699601, "end_pos": 26656340, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052202.2", "url": "https://www.ensembl.org/id/ENSSSCT00000052202.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056990.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056990.2" } ] } }, { "isoform_ac": "I3LVF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT85/entry#I3LVF2-1", "sequence": { "sequence": "MASAGNAAEPQDLGSGGSGGSCSGAPGRPAGGGRRRRTGGLRRNAAPDRDYLHRPSYCDAAFALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTTEALRQHLDSALQASRVHVYMYKQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLQWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNTTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQTMFQLMTPKQMYEHFKGYEYVSHISWNEDKAAAILEAWQRTYVEVVHQSVAQNSTQKVLSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTSPCVSRVIQVEPQAYTETHDNTRYSPPPPYSSHSFAHETQITMQSTVQLRTEYDPHTHVYYTTAEPRSEISVQPVTLAQDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPPCTKWTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFSNVKYVMLEENKQLPKMWLHYFRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKRRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICNNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLSISVVLACTFLVCAVFLLNPWTAGIIVTVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGLNRLPTPSPEPPPSVVRFAVPPSHANNGSDSSDSEYSSQTTVSGISEELRAYEAQQGTGGPAHQVIVEATENPVFARSTVVHPEPRHHPPPNPRQQPHRDSGSLPPGRPGQQPRRDPSREGSRPPPYRPRRDAFEISTEGHSGPSHRDRAGPRGARSHNPRHSAFTTTGGSAPGYCQPITTVTASASVTVAVHPPPAPGSSRNPRGGLCPGYEGYPETDPGLFEDPHVPFNVRCERRDSKVEVIELQDVECEERPRGSGSN", "length": 1451, "header": "tr|I3LVF2-1|A0A287AT85_PIG Computationally mapped isoform of Patched 1 OS=Sus scrofa OX=9823 GN=PTCH1 PE=3 SV=3 CANONICAL=A0A287AT85-1" }, "locus": { "chromosome": "10", "start_pos": 26699601, "end_pos": 26635822, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029331.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029331.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028104.3", "url": "https://www.ensembl.org/id/ENSSSCP00000028104.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1128, "start_aa": "Thr", "end_pos": 1128, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1128", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LVF2", "url": "https://www.uniprot.org/uniprotkb/I3LVF2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5610787", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610787", "resource": "Reactome", "description": "Hedgehog 'off' state" }, { "id": "R-SSC-5632681", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632681", "resource": "Reactome", "description": "Ligand-receptor interactions" }, { "id": "R-SSC-5632684", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "resource": "Reactome", "description": "Hedgehog 'on' state" }, { "id": "R-SSC-5635838", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5635838", "resource": "Reactome", "description": "Activation of SMO" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AT85", "url": "https://www.uniprot.org/uniprotkb/A0A287AT85" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A287AT85", "url": "https://www.uniprot.org/uniprotkb/A0A287AT85" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AT85", "url": "https://www.uniprot.org/uniprotkb/A0A287AT85" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "A0A287AT85", "url": "https://www.uniprot.org/uniprotkb/A0A287AT85" } ], "pmid": "" }, { "name": "apical part of cell", "id": "GO:0045177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045177", "evidence": [ { "database": "UniProtKB", "id": "A0A287AT85", "url": 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"MASPADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASEAEMVPAIKPPREEFLNSRMLMPQDIMAYRGREVVENSLPLRNAPGCESRAFAPSLYNGLSTPPASYPVYGHLPVSSFLFSDEELRDARMPVANPFPKERALPCDSARPIHADYSRPAMEISPSMCHSSIYSPKEAAPEEARSDMHYSVAEGPKPAAPSARGAPYFPCDKAGKEEERPSSEDEIALHFEPPNAPLNRKGLVSPQSPQKSDCQPNSPTESCSSKNACILQTSGSPPAKSPTDPKACNWKKYKFIVLNSLNQNAKPEGPEPAELGRLSPRAYTAPPACQPPMEPETLDLQSPTKLSTNGEDSTIPQASRLNNIVNRSLTGSPRSSSESHSPLYLHPPKCTSCGSQSPQHTEMCLHAAGPTFPEELGETQSEYSDSSCENGAFFCNECDCRFSEEASLKRHTLQTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPYKCETCGARFVQVAHLRAHVLIHTGEKPYPCEICGTRFRHLQTLKSHLRIHTGEKPYHCEKCNLHFRHKSQLRLHLRQKHGAITNTKVQYRVSATDLPPELPKAC", "length": 706, "header": "tr|F1SFH8-1|A0A287AXN0_PIG Computationally mapped isoform of BCL6 transcription repressor OS=Sus scrofa OX=9823 GN=BCL6 PE=4 SV=1 CANONICAL=A0A287AXN0-1" }, "locus": { "chromosome": "13", "start_pos": 125389863, "end_pos": 125378317, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012922.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012922.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012581.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012581.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFH8", "url": "https://www.uniprot.org/uniprotkb/F1SFH8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156549", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156549", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M9PZK1-1", "protein_name": "BCL6A transcription repressor a isoform X1", "gene_name": "bcl6aa", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPHSLQQKHAQQMLLLCQGINGTREDGPAPHSWSHKRSYSDLEKMACAADSCIQFTRHASDVLLNLNRLRSRDILTDVTILVNRQQFRAHKTVLMACSGLFYSIFTDSHKCNLNAISLDPKVDPEGFAILLEFMYTSRLALKESLIMAIMNTAIYLQMDHVVDTCHRFIKSSDSSIKLPREDFLVSPLLLPQDIHSYRPHEVMDNVSGRSATFRDGRPYGVCMFNGVNAPNNSYLYGQFPMQGFPFPLCKLTDTKNTFSDFSKGGIIHHKHCSPSDGNNPVLNDFTRSATSGSSAVCHTGSYSSRELGRDEDMKRETLEGVVHSIGMSSRKHGFISLAQEQQRESGKEQSSLAEEHLSHQHYSMGISSNGRKTLMSSPQSPLKSDCQPNSPTESSSSKNAALAQALQPPTSQGTSDPKARNWKKYKFIVLNQSSKEEETNPPDPGMHSPQRPGLSAFLHHVDSEHPDSKVTTKISEQGEDFPAPQASRLNNIINRSLEGSQRNIDSHSSLYMNHLKCSSCGSQSPQHSDVCPNTSASRLAEEMSEMHSEYSDSSCENGTYFCNECDSKFAEEEALKRHTLQVHSDKPYKCDRCQAAFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPYKCETCGARFVQVAHLRAHVLIHTGEKPYPCEICGTRFRHLQTLKSHLRIHTGEKPYHCEKCNLHFRHKSQLRLHLRQKHGAITNTKIQYRMSSTELPTDLTKAC", "length": 748 }, "evidence": [ { "id": "A0A287AXN0", "url": "https://omabrowser.org/oma/group/A0A287AXN0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0YN80-1", "protein_name": "B-cell CLL/lymphoma 6", "gene_name": "BCL6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASPADSCIQFTRHASDVLLNLNRLRSRDILTDVVIIVNREQFRAHKTVLMACSGLFYSIFTDQLKCNLNVINLDPEINPEGFCILLDFMYTSRLNLRENNIMAVMATALYLQMEHVVDTCRRFVKSSEAEMVSAVKTPREEFLAGRMLNHPEVMAYRGRDVSENSMPLQNGSLCNGRAFAPGLFNSLPGSSISYPGYSPLPLNGFLVDDELREMRMPLSELSRVSAFPKERIPCDGSRTIPTEYMRTITDISANMCHATIYSPKEGAAEEARSDMHYSVASGPKPVVPSIRNNPYFSCDKVAKEEERTSSEDEISQHFEPTNTPLDRKGLISPQSPQKSDCQPNSPTESSSSKNARISQNSNSLFTKSPTDPKACNWKKYKFIVLNSLNQSTKQDSADQNEMGTLSPRTYMPMSTCQQSMEPEHLNVQSPTKMSVNGEDSNIPQASRLNNIVNRSRDGSPRSSEGQSPLYMHSSKCSSCGCQSPQHTEMCLHTSGSAFGEEMGETQSEYSDSSCENGAFFCNECDCRFSEEASLKRHSLQVHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPYKCETCGARFVQVAHLRAHVLIHTGEKPYPCEICGTRFRHLQTLKSHLRIHTGEKPYHFSVCIYVQCGFARCLSFQWKFSMYGLYMELSFFFKVQPDVAEGVVVELSV", "length": 711 }, "evidence": [ { "id": "A0A287AXN0", "url": "https://omabrowser.org/oma/group/A0A287AXN0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1B8E6-1", "protein_name": "BCL6 transcription repressor", "gene_name": "BCL6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASPADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASEAEMVPAIKPPREDFLNSRMLMPQDIMAYRGREVVENSLPLRNAPGCESRAFAPSLYNGLSTPPASYPVYGHLPVSSFLFSDEELRDARMPIANPFPKDRALPCDSARPVPSEYSRPAMEISPSVCHSTIYSPKEAAPEEARSDMHYSVAEGPKPAAPSARSAPYFPCDKAGKEEERPSSEDEIALHFEPPNAPLNRKGLVSPQSPQKSDCQPNSPTESCSSKNACILQTSGSPPAKSPTDPKACNWKKYKFIVLNSLNQNAKPEGPEQAELGRLSPRAYAAPPACQPPMEPDSLDLQSPTKLSTSAEDSTIPQASRLNNIVNRSLTGSPRSSSESHSPLYLHPPKCTSCGSQSPQHAEMCLHAAGPTFPEELGETQSEYSDSSCGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPYKCETCGARFVQVAHLRAHVLIHTGEKPYPCEICGTRFRHLQTLKSHLRIHTGEKPYHCEKCNLHFRHKSQLRLHLRQKHGAITNTKVQYRVSATDLPPELPKAC", "length": 650 }, "evidence": [ { "id": "A0A287AXN0", "url": "https://omabrowser.org/oma/group/A0A287AXN0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3GT91-1", "protein_name": "B-cell lymphoma 6 protein isoform X1", "gene_name": "Bcl6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASPADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLNVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASEAEMVPALKPPREEFLNSRMLMPHDIMGYRGREVVENNLPLRNTPGCESRAFAPSLYSGLSTPPASYPMYSHLPLSSFLFADEEPRDAHARMPVANPFPKERTLSCDSARPVPSEYSRPAMEVSLSLCHSNIYLPKEAVPEDTRSDMHFSVTEGPKPAAPSARNAPYFPCDKASKEERPSSEDEIALHFEPPNAPLNRKGLVSPQSPQKSDCQPNSPTESCSSKNACILQASGSPPAKSPTDPKACNWKKYKFIVLNSLNQNAKPEGSEQTELGRLSPRAYPVQPAGQPPLEPDNLGLQIPTKLSASGEDSTIPQASRLNNIVNRSLTGSPRSSSESHSPLYMHPPKCTSCDSQSPQHTEMCLHTAGPTFPEEMGETQSEYSDSSCENGAFFCNECDCRFSEEASLKRHTLQTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPYKCETCGARFVQVAHLRAHVLIHTGEKPYPCEICGTRFRHLQTLKSHLRIHTGEKPYHCEKCNLHFRHKSQLRLHLRQKHGAITNTKVQYRVSAADLPPELPKAC", "length": 707 }, "evidence": [ { "id": "A0A287AXN0", "url": "https://omabrowser.org/oma/group/A0A287AXN0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P41182-1", "protein_name": "B-cell lymphoma 6 protein", "gene_name": "BCL6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASPADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASEAEMVSAIKPPREEFLNSRMLMPQDIMAYRGREVVENNLPLRSAPGCESRAFAPSLYSGLSTPPASYSMYSHLPVSSLLFSDEEFRDVRMPVANPFPKERALPCDSARPVPGEYSRPTLEVSPNVCHSNIYSPKETIPEEARSDMHYSVAEGLKPAAPSARNAPYFPCDKASKEEERPSSEDEIALHFEPPNAPLNRKGLVSPQSPQKSDCQPNSPTESCSSKNACILQASGSPPAKSPTDPKACNWKKYKFIVLNSLNQNAKPEGPEQAELGRLSPRAYTAPPACQPPMEPENLDLQSPTKLSASGEDSTIPQASRLNNIVNRSMTGSPRSSSESHSPLYMHPPKCTSCGSQSPQHAEMCLHTAGPTFPEEMGETQSEYSDSSCENGAFFCNECDCRFSEEASLKRHTLQTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPYKCETCGARFVQVAHLRAHVLIHTGEKPYPCEICGTRFRHLQTLKSHLRIHTGEKPYHCEKCNLHFRHKSQLRLHLRQKHGAITNTKVQYRVSATDLPPELPKAC", "length": 706 }, "evidence": [ { "id": "A0A287AXN0", "url": "https://omabrowser.org/oma/group/A0A287AXN0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P41183-1", "protein_name": "B-cell lymphoma 6 protein homolog", "gene_name": "Bcl6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASPADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEISPEGFCILLDFMYTSRLNLREGNIMAVMTTAMYLQMEHVVDTCRKFIKASEAEMAPALKPPREEFLNSRMLMPHDIMAYRGREVVENNMPLRNTPGCESRAFAPPLYSGLSTPPASYPMYSHLPLSTFLFSDEELRDAPRMPVANPFPKERALPCDSARQVPNEYSRPAMEVSPSLCHSNIYSPKEAVPEEARSDIHYSVPEGPKPAVPSARNAPYFPCDKASKEEERPSSEDEIALHFEPPNAPLNRKGLVSPQSPQKSDCQPNSPTESCSSKNACILQASGSPPAKSPTDPKACNWKKYKFIVLNSLNQNAKPEGSEQAELGRLSPRAYPAPPACQPPMEPANLDLQSPTKLSASGEDSTIPQASRLNNLVNRSLAGSPRSSSESHSPLYMHPPKCTSCGSQSPQHTEMCLHTAGPTFPEEMGETQSEYSDSSCENGTFFCNECDCRFSEEASLKRHTLQTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPYKCETCGARFVQVAHLRAHVLIHTGEKPYPCEICGTRFRHLQTLKSHLRIHTGEKPYHCEKCNLHFRHKSQLRLHLRQKHGAITNTKVQYRVSAADLPPELPKAC", "length": 707 }, "evidence": [ { "id": "A0A287AXN0", "url": "https://omabrowser.org/oma/group/A0A287AXN0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "replication fork", "id": "GO:0005657", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005657", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "paraspeckles", "id": "GO:0042382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042382", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "chromatin DNA binding", "id": "GO:0031490", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031490", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "intronic transcription regulatory region sequence-specific DNA binding", "id": "GO:0001161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001161", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "transcription corepressor binding", "id": "GO:0001222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001222", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "DNA-binding transcription factor binding", "id": "GO:0140297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140297", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 13, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "inflammatory response", "id": "GO:0006954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006954", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "regulation of cell population proliferation", "id": "GO:0042127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042127", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "positive regulation of apoptotic process", "id": "GO:0043065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043065", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "regulation of immune system process", "id": "GO:0002682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002682", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "negative regulation of cell growth", "id": "GO:0030308", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030308", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "regulation of inflammatory response", "id": "GO:0050727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050727", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "regulation of cytokine production", "id": "GO:0001817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001817", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXN0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXN0" } ], "pmid": "" }, { "name": "regulation of cell differentiation", "id": "GO:0045595", "url": 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461:SF145", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461:SF145", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00079", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00079", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZIU5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZIU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARJ8", "url": "https://www.uniprot.org/uniprotkb/A0A287ARJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARJ8-1", 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"MISWEGTFAGINGQRPLESPALRAGGGSGSTQRIPLCEADMRAEGMSLFLALGLLVAGLCSRVHCVPADDLASKTVTLKGQITKLPAHNTAVVSSNTDFAFSLYKQLVSLDPNKNVIFSPLSVSIALAFLSLGARGSTLTELLEGLKFNLTKTPEAEIHQGFQHLLRALSQPSNLLQLNVGNAMFVDERLKLLDKFVQDARELYFSEAFSISFKDSDAAVEFINNYVKNKTKGKIVDLFKQLSPDTVLVLVNCIYFKAKWKTPFDPSFTTEADFHVSKNRTVRVPMMGISGRTLPYFRDEELACTVVELPYTSNDSALFILPDDGRMAAVEAQLLPETLRRWRDSLHQRRITALHLPRFSVSGDYTLHDILPHLGIKKVFSHQADLSGITDQARLKVSQVVHRAVLDVDEEGTEGAAATGISIELTSIEFLTVHFNRPFLFSIIHKDTQSIIFSGKVTDPSQA", "length": 463, "header": "tr|A0A287AT48-1|A0A287AT48_PIG Isoform 1 of Serpin domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A287AT48-1" }, "isoforms": [ { "isoform_ac": "A0A286ZIU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT48/entry#A0A286ZIU5-1", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCP00000031402.2" } ] } }, { "isoform_ac": "A0A287ARJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT48/entry#A0A287ARJ8-1", "sequence": { "sequence": "MRAEGMVHCVPADDLASKTVTLKGQITKLPAHNTAVVSSNTDFAFSLYKQLVSLDPNKNVIFSPLSVSIALAFLSLGARGSTLTELLEGLKFNLTKTPEAEIHQGFQHLLRALSQPSNLLQLNVGNAMFVDERLKLLDKFVQDARELYFSEAFSISFKDSDAAVEFINNYVKNKTKGKIVDLFKQLSPDTVLVLVNCIYFKAKWKTPFDPSFTTEADFHVSKNRTVRELACTVVELPYTSNDSALFILPDDGRMAAVEAQLLPETLRRWRDSLRITALHLPRFSVSGDYTLHDILPHLGIKKVFSHQADLSGITDQARLKVSQVVHRAVLDVDEEGTEGAAATGISIELTSIEFLTVHFNRPFLFSIIHKDTQSIIFSGKVTDPSQA", "length": 387, "header": "tr|A0A287ARJ8-1|A0A287ARJ8_PIG Computationally mapped isoform of Serpin domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=3 CANONICAL=A0A287AT48-1" }, "locus": { "chromosome": "7", "start_pos": 115856732, "end_pos": 115850756, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060274.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060274.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046529.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046529.3" } ] } }, { "isoform_ac": "A0A287AT48-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT48/entry#A0A287AT48-1", "sequence": { "sequence": "MISWEGTFAGINGQRPLESPALRAGGGSGSTQRIPLCEADMRAEGMSLFLALGLLVAGLCSRVHCVPADDLASKTVTLKGQITKLPAHNTAVVSSNTDFAFSLYKQLVSLDPNKNVIFSPLSVSIALAFLSLGARGSTLTELLEGLKFNLTKTPEAEIHQGFQHLLRALSQPSNLLQLNVGNAMFVDERLKLLDKFVQDARELYFSEAFSISFKDSDAAVEFINNYVKNKTKGKIVDLFKQLSPDTVLVLVNCIYFKAKWKTPFDPSFTTEADFHVSKNRTVRVPMMGISGRTLPYFRDEELACTVVELPYTSNDSALFILPDDGRMAAVEAQLLPETLRRWRDSLHQRRITALHLPRFSVSGDYTLHDILPHLGIKKVFSHQADLSGITDQARLKVSQVVHRAVLDVDEEGTEGAAATGISIELTSIEFLTVHFNRPFLFSIIHKDTQSIIFSGKVTDPSQA", "length": 463, "header": "tr|A0A287AT48-1|A0A287AT48_PIG Isoform 1 of Serpin domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A287AT48-1" }, "locus": { "chromosome": "7", "start_pos": 115858743, "end_pos": 115850756, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062721.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062721.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047273.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047273.2" } ] } }, { "isoform_ac": "A0A287AVA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT48/entry#A0A287AVA9-1", "sequence": { "sequence": "MRAEGMSLFLALGLLVAGLCSRVHCVPADDLASKTVTLKGQITKLPAHNTAVVSSNTDFAFSLYKQLVSLDPNKNVIFSPLSVSIALAFLSLGARGSTLTELLEGLKFNLTKTPEAEIHQGFQHLLRALSQPSNLLQLNVGNAMFVDERLKLLDKFVQDARELYFSEAFSISFKDSDAAVEFINNYVKNKTKGKIVDLFKQLSPDTVLVLVNCIYFKAKWKTPFDPSFTTEADFHVSKNRTVRELACTVVELPYTSNDSALFILPDDGRMAAVEAQLLPETLRRWRDSLHQRRITALHLPRFSVSGDYTLHDILPHLGIKKVFSHQADLSGITDQARLKVSQVVHRAVLDVDEEGTEGAAATGISIELTSIEFLTVHFNRPFLFSIIHKDTQSIIFSGKVTDPSQA", "length": 406, "header": "tr|A0A287AVA9-1|A0A287AT48_PIG Computationally mapped isoform of Serpin domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A287AT48-1" }, "locus": { "chromosome": "7", "start_pos": 115856732, "end_pos": 115850756, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059311.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059311.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048057.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048057.2" } ] } }, { "isoform_ac": "F1SCC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT48/entry#F1SCC6-1", "sequence": { "sequence": "WWRHPPCGVHCVPADDLASKTVTLKGQITKLPAHNTAVVSSNTDFAFSLYKQLVSLDPNKNVIFSPLSVSIALAFLSLGARGSTLTELLEGLKFNLTKTPEAEIHQGFQHLLRALSQPSNLLQLNVGNAMFVDERLKLLDKFVQDARELYFSEAFSISFKDSDAAVEFINNYVKNKTKGKIVDLFKQLSPDTVLVLVNCIYFKGGSKWKTPFDPSFTTEADFHVSKNRTVRELACTVVELPYTSNDSALFILPDDGRMAAVEAQLLPETLRRWRDSLRITALHLPRFSVSGDYTLHDILPHLGIKKVFSHQADLSGITDQARLKVSQVVHRAVLDVDEEGTEGAAATGISIELTSIEFLTVHFNRPFLFSIIHKDTQSIIFSGKVTDPSQA", "length": 391, "header": "tr|F1SCC6-1|A0A287AT48_PIG Computationally mapped isoform of Serpin domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=4 CANONICAL=A0A287AT48-1" }, "locus": { "chromosome": "7", "start_pos": 115857433, "end_pos": 115850756, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002764.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002764.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002695.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002695.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCC6", "url": "https://www.uniprot.org/uniprotkb/F1SCC6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "A0A287AT48", "url": "https://www.uniprot.org/uniprotkb/A0A287AT48" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": 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"MAEATPPRGKMRFRRNAASFPGNLHLVLVLRPTSFLQRTFTDIGFRFSQEDFMLKLPVVMLSSVSDLLTYIDDKQLTPELGGTLQYCHSEWIIFRNAIENFALTVKDMAQMLQSFGTELAETELPDDIPSIEEILAVRAERYHLLKNDITAVTKEGKILLTNLEVPDAEDAVSSRPEHHQHISGDWQTINKLLTQVHDMEIAFDGFWEKHQLKMEQYLQLWKFEQDFQELVSEVELLLNQQAELADVTGNIAQVKQKIKKLENLDENSQDLLAKARFVIIHGHRLAASHHYALDLICQRCNELRYLSDILVNEIKAKRVQLSRTFKMHKLLQQARQCCDEGECLLANQEIDKFQSKEDAQKALQDIENFLEMALPFINYDPETLQYEFDVILSPELKAQMQTIQLKLENIRSIFETQQAGFRNLADKRGKPVPFVVPASDSLIRSRAPFFSSKQVGVGYSFFQACKLFSKGKKTWRQNQSNLKIEVVHDCREKRASAQSSSLDNDNSLDVLKNHVLNELVQTERVYVRELFTVLLGYRAEMDNPEMFDLMPPLLRNKKDVLFGNMAEIYEFHNNIFMSSLENCVDAPERVGLCFLERKDDFQMYAKYCQNKPRSEGIWKKYSDCAFFQECQRKLKHRLGLDSYLLKPVQRITKYQLLLKELLKYSKDCEGSVQLKEALDTMLDLLKSVNDSMHQIAINGYIGNLNELGKMITQGAFSVWIGHKKGATKMKDFARFKPMQRHLFLYEKAIVFCKRRVESGEGSDRYPSYSFKHCLKMDEVGITEYVKGDNRKFEIWYAGKEEVYIVQASNIDVKMTWLKEIRSILLKQQELMTVQKREQYNQLTEQNHLSSQRSDERHQGAFMGAEEADLEHTSAMVEVGEAIASVRAEANTVWTEMSSPAEISEEPEEWSSHYFYPSYDDNEEEERPLMSPGTYKALADCRKRGSEDLLIRHGDVIQLLHEDAEGQWLVKNLNRRKEGLIPGNSLQILIGDYRFRNARVTDAALSHTRKFPWN", "length": 1013, "header": "tr|A0A287B0A9-1|A0A287B0A9_PIG Isoform 1 of MCF.2 cell line derived transforming sequence OS=Sus scrofa OX=9823 GN=MCF2 PE=3 SV=3 CANONICAL=A0A287B0A9-1" }, "locus": { "chromosome": "X", "start_pos": 114329986, "end_pos": 114259753, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046935.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046935.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049840.3", "url": "https://www.ensembl.org/id/ENSSSCP00000049840.3" } ] } }, { "isoform_ac": "A0A287B412-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0A9/entry#A0A287B412-1", "sequence": { "sequence": 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"length": 1034, "header": "tr|A0A287B412-1|A0A287B412_PIG Computationally mapped isoform of MCF.2 cell line derived transforming sequence OS=Sus scrofa OX=9823 GN=MCF2 PE=3 SV=3 CANONICAL=A0A287B0A9-1" }, "locus": { "chromosome": "X", "start_pos": 114342540, "end_pos": 114259753, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046460.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046460.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050996.3", "url": "https://www.ensembl.org/id/ENSSSCP00000050996.3" } ] } }, { "isoform_ac": "F1RQ74-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0A9/entry#F1RQ74-1", "sequence": { "sequence": "MAAAGSRPHLGSAARHAPGAPQPRTPEADGRTPGLPQDPDGCALVPTTQAIPLQVDMAMALQRVRISEKYGKSYLCLLQAVFVAETEVLLRVKDISHFLMQDIAFLSGGRGKDNAWIITFPENCNFRCIPEEVIAKVLTYLTSIARQNGSDSRFTVILDRRLDTWSSLKISLQKISASFPGNLHLVLVLRPTSFLQRTFTDIGFRFSQEDFMLKLPVVMLSSVSDLLTYIDDKQLTPELGGTLQYCHSEWIIFRNAIENFALTVKDMAQMLQSFGTELAETELPDDIPSIEEILAVRAERYHLLKNDITAVTKEGKILLTNLEVPDAEDAVSSRPEHHQHISGDWQTINKLLTQVHDMEIAFDGFWEKHQLKMEQYLQLWKFEQDFQELVSEVELLLNQQAELADVTGNIAQVKQKIKKLENLDENSQDLLAKARFVIIHGHRLAASHHYALDLICQRCNELRYLSDILVNEIKAKRVQLSRTFKMHKLLQQARQCCDEGECLLANQEIDKFQSKEDAQKALQDIENFLEMALPFINYDPETLQYEFDVILSPELKAQMQTIQLKLENIRSIFETQQAGFRNLADKRGKPVPFVVPASDSLIRSRAPFFSSKQGKKTWRQNQSNLKIEVVHDCREKRASAQSSSLDNDNSLDVLKNHVLNELVQTERVYVRELFTVLLGYRAEMDNPEMFDLMPPLLRNKKDVLFGNMAEIYEFHNNIFMSSLENCVDAPERVGLCFLERKDDFQMYAKYCQNKPRSEGIWKKYSDCAFFQECQRKLKHRLGLDSYLLKPVQRITKYQLLLKELLKYSKDCEGSVQLKEALDTMLDLLKSVNDSMHQIAINGYIGNLNELGKMITQGAFSVWIGHKKGATKMKDFARFKPMQRHLFLYEKAIVFCKRRVESGEGSDRYPSYSFKHCLKMDEVGITEYVKGDNRKFEIWYAGKEEVYIVQASNIDVKMTWLKEIRSILLKQQELMTVQKREQYNQLTEQNHLSSQRSDERHQGAFMGAEEADLEHTSAMVEVGEAIASVRAEANTVWTEMSSPAEISEEPEEWSSHYFYPSYDDNEEEERPLMRPASQGAVLF", "length": 1082, "header": "tr|F1RQ74-1|A0A287B0A9_PIG Computationally mapped isoform of MCF.2 cell line derived transforming sequence OS=Sus scrofa OX=9823 GN=MCF2 PE=3 SV=4 CANONICAL=A0A287B0A9-1" }, "locus": { "chromosome": "X", "start_pos": 114356122, "end_pos": 114265901, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013898.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013898.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013515.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013515.4" } ] } }, { "isoform_ac": "K7GLB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0A9/entry#K7GLB7-1", "sequence": { "sequence": "MAEATPPRGKMRFRRNAASFPGNLHLVLVLRPTSFLQRTFTDIGFRFSQEDFMLKLPVVMLSSVSDLLTYIDDKQLTPELGGTLQYCHSEWIIFRNAIENFALTVKDMAQMLQSFGTELAETELPDDIPSIEEILAVRAERYHLLKNDITAVTKEGKILLTNLEVPDAEDAVSSRPEHHQHISGDWQTINKLLTQVHDMEIAFDGFWEKHQLKMEQYLQLWKFEQDFQELVSEVELLLNQQAELADVTGNIAQVKQKIKKLENLDENSQDLLAKARFVIIHGHRLAASHHYALDLICQRCNELRYLSDILVNEIKAKRVQLSRTFKMHKLLQQARQCCDEGECLLANQEIDKFQSKEDAQKALQDIENFLEMALPFINYDPETLQYEFDVILSPELKAQMQTIQLKLENIRSIFETQQAGFRNLADKRGKPVPFVVPASDSLIRSRAPFFSSKQVGVGYSFFQACKLFSKGKKTWRQNQSNLKIEVVHDCREKRASAQSSSLDNDNSLDVLKNHVLNELVQTERVYVRELFTVLLGYRAEMDNPEMFDLMPPLLRNKKDVLFGNMAEIYEFHNNIFMSSLENCVDAPERVGLCFLERKDDFQMYAKYCQNKPRSEGIWKKYSDCAFFQECQRKLKHRLGLDSYLLKPVQRITKYQLLLKELLKYSKDCEGSVQLKEALDTMLDLLKSVNDSMHQIAINGYIGNLNELGKMITQGAFSVWIGHKKGATKMKDFARFKPMQRHLFLYEKAIVFCKRRVESGEGSDRYPSYSFKHCLKMDEVGITEYVKGDNRKFEIWYAGKEEVYIVQASNIDVKMTWLKEIRSILLKQQELMTVQKREQYNQLTEQNHLSSQRSDERHQGAFMGAEEADLEHTSAMVEVGEAIASVRAEANTVWTEMSSPAEISEEPEEWSSHYFYPSYDDNEEEERPLMVGEKSKQKKRRSDSREQFADFNR", "length": 952, "header": "tr|K7GLB7-1|A0A287B0A9_PIG Computationally mapped isoform of MCF.2 cell line derived transforming sequence OS=Sus scrofa OX=9823 GN=MCF2 PE=3 SV=2 CANONICAL=A0A287B0A9-1" }, "locus": { "chromosome": "X", "start_pos": 114329986, "end_pos": 114263885, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035970.2", "url": "https://www.ensembl.org/id/ENSSSCT00000035970.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028646.2", "url": "https://www.ensembl.org/id/ENSSSCP00000028646.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "K7GLB7", "url": "https://www.uniprot.org/uniprotkb/K7GLB7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-193634", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193634", "resource": "Reactome", "description": "Axonal growth inhibition (RHOA activation)" }, { "id": "R-SSC-193648", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "resource": "Reactome", "description": "NRAGE signals death through JNK" }, { "id": "R-SSC-416482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "resource": 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"uniprot_ac": "A0A287ASL6", "uniprot_id": "A0A287ASL6_PIG", "mass": { "chemical_mass": 51243.0, "monoisotopic_mass": 51243.0 }, "refseq": { "ac": "XP_005661389", "name": "signal-transducing adaptor protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661389" }, "gene_names": [ { "name": "STAP2", "type": "recommended", "evidence": [ { "id": "A0A287ASL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ASL6" } ] }, { "name": "STAP2", "type": "synonym", "evidence": [ { "id": "XP_005661389", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661389" } ] } ], "protein_names": [ { "name": "Signal transducing adaptor family member 2", "type": "synonym", "evidence": [ { "id": "A0A287ASL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ASL6/entry#names_and_taxonomy" } ] }, { "name": "signal-transducing adaptor protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005661389", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661389" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ASL6", "url": "https://www.uniprot.org/uniprotkb/A0A287ASL6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STAP2", "url": "https://www.uniprot.org/uniprotkb/A0A287ASL6", "locus": { "chromosome": "2", "start_pos": 74473791, "end_pos": 74462388, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013506", "url": "https://www.ensembl.org/id/ENSSSCG00000013506" } ] } } ], "crossref": [ { "id": "A0A287ASL6", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ASL6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013506", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013506", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10404", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10404", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13268", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13268", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523772", "url": "https://www.ncbi.nlm.nih.gov/gene/100523772", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "SQLPPCY", "url": "https://omabrowser.org/oma/group/SQLPPCY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZXP2", "url": "https://www.orthodb.org/?gene=A0A286ZXP2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A287ASL6", "url": "https://www.orthodb.org/?gene=A0A287ASL6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16186:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16186:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8849474", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8849474", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005661389", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661389", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZL39", "url": "https://www.uniprot.org/uniprotkb/A0A286ZL39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZL39-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZL39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZXP2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZXP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ASL6", "url": "https://www.uniprot.org/uniprotkb/A0A287ASL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ASL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAMASALSPPRIPKPKGALPSHYHESFLEKKGPRDRNRSPEAGPWMGRNSLRSQHLFKDSKQDYKKFWAGLQGLTLYFYNSNRDSQHVEKLDLGAFVKLTDEAPWGSSHDPGTHFCLVLRNQEIKFKVESLESRERWKGFILTVVELRVPSNLTLLPGHLYMMAEALAKEEARRALEMPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGTGALSVTTRQTLNGTPVVRHYKVKREGLKYVIDVEEPFSCTSIDAVVNYFVSHTNKALVPFLLDEDYEKVIGYVEADKENGESVWVAPSASSASLVPGPGPAPPKGGPKQLPPMPVSSQDKLPPLLHQDENYVIPIGDTPAANYMNEDVPSPSRPVVLKPKKLAKFQAKPPKPPSVPRPEPKVLHSGLARKLAVSSAQAFFPTTGLADVTAELEEKLQRRRALEEAAGRTGDQQASLQAWHHSQTDPSSKN", "length": 462, "header": "tr|A0A287ASL6-1|A0A287ASL6_PIG Isoform 1 of Signal transducing adaptor family member 2 OS=Sus scrofa OX=9823 GN=STAP2 PE=4 SV=1 CANONICAL=A0A287ASL6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZL39-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASL6/entry#A0A286ZL39-1", "sequence": { "sequence": "MAMASALSPPRIPKPKGALPSHYHESFLEKKGPRDRDYKKFWAGLQGLTLYFYNSNRDSQHVEKLDLGAFVKLTDEAPWGSSHDPGTHFCLVLRNQEIKFKVESLESRERWKGFILTVVELRVPSNLTLLPGHLYMMAEALAKEEARRALEMPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGTGALSVTTRQTLNGTPVVRHYKVKREGLKYVIDVEEPFSCTSIDAVVNYFVSHTNKALVPFLLDEDYEKVIGYVEADKENGESVWVAPSASSASLVPGPGPAPPKGGPKQLPPMPVSSQDKLPPLLHQDENYVIPIGDTPAANYMNEDVPSPSRPVVLKPKKLAKFQAKPPKPPSVPRPEPKVLHSGLARKLAVSSAQAFFPTTGLADVTAELEEKLQACCHVEATTPHLGDSDEKQRDSAVQPALTPPPSYPWAVEEASP", "length": 446, "header": "tr|A0A286ZL39-1|A0A287ASL6_PIG Computationally mapped isoform of Signal transducing adaptor family member 2 OS=Sus scrofa OX=9823 GN=STAP2 PE=4 SV=2 CANONICAL=A0A287ASL6-1" }, "locus": { "chromosome": "2", "start_pos": 74472142, "end_pos": 74462537, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044689.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044689.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032268.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032268.2" } ] } }, { "isoform_ac": "A0A286ZXP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASL6/entry#A0A286ZXP2-1", "sequence": { "sequence": "MAMASALSPPRIPKPKGALPSHYHESFLEKKGPRDRNRSPEAGPWMGRNSLRSQHLFKDSKQDYKKFWAGLQGLTLYFYNSNRDSQHVEKLDLGAFVKLTDEAPWGSSHDPGTHFCLVLRNQEIKFKVESLESRERWKGFILTVVELRVPSNLTLLPGHLYMMAEALAKEEARRALEMPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGTGALSVTTRQTLNGTPVVRHYKVKREGLKYVIDVEEPFSCTSIDAVVNYFVSHTNKALVPFLLDEDYEKVIGPAPPKGGPKQLPPMPVSSQDKLPPLLHQDENYVIPIGDTPAANYMNEDVPSPSRPVVLKPKKLAKFQAKPPKPPSVPRPEPKVLHSGLARKLAVSSAQAFFPTTGLADVTAELEEKLQRRRALEEAAGRTGDQQASLQAWHHSQTDPSSKN", "length": 434, "header": "tr|A0A286ZXP2-1|A0A287ASL6_PIG Computationally mapped isoform of Signal transducing adaptor family member 2 OS=Sus scrofa OX=9823 GN=STAP2 PE=4 SV=1 CANONICAL=A0A287ASL6-1" }, "locus": { "chromosome": "2", "start_pos": 74471513, "end_pos": 74462537, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056656.2", "url": "https://www.ensembl.org/id/ENSSSCT00000056656.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036411.1", "url": "https://www.ensembl.org/id/ENSSSCP00000036411.1" } ] } }, { "isoform_ac": "A0A287ASL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASL6/entry#A0A287ASL6-1", "sequence": { "sequence": "MAMASALSPPRIPKPKGALPSHYHESFLEKKGPRDRNRSPEAGPWMGRNSLRSQHLFKDSKQDYKKFWAGLQGLTLYFYNSNRDSQHVEKLDLGAFVKLTDEAPWGSSHDPGTHFCLVLRNQEIKFKVESLESRERWKGFILTVVELRVPSNLTLLPGHLYMMAEALAKEEARRALEMPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGTGALSVTTRQTLNGTPVVRHYKVKREGLKYVIDVEEPFSCTSIDAVVNYFVSHTNKALVPFLLDEDYEKVIGYVEADKENGESVWVAPSASSASLVPGPGPAPPKGGPKQLPPMPVSSQDKLPPLLHQDENYVIPIGDTPAANYMNEDVPSPSRPVVLKPKKLAKFQAKPPKPPSVPRPEPKVLHSGLARKLAVSSAQAFFPTTGLADVTAELEEKLQRRRALEEAAGRTGDQQASLQAWHHSQTDPSSKN", "length": 462, "header": "tr|A0A287ASL6-1|A0A287ASL6_PIG Isoform 1 of Signal transducing adaptor family member 2 OS=Sus scrofa OX=9823 GN=STAP2 PE=4 SV=1 CANONICAL=A0A287ASL6-1" }, "locus": { "chromosome": "2", "start_pos": 74471513, "end_pos": 74462537, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065882.2", "url": "https://www.ensembl.org/id/ENSSSCT00000065882.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047086.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047086.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 350, "start_aa": "Thr", "end_pos": 350, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr350", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZL39", "url": "https://www.uniprot.org/uniprotkb/A0A286ZL39" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8849474", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8849474", "resource": "Reactome", "description": "PTK6 Activates STAT3" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6G264-1", "protein_name": "Signal-transducing adaptor protein 2", "gene_name": "Stap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVMASALCPPRGPKLKGAPPSHYYENFLEKKGPCDQDYRKFWAGLQGLAICFYNSNRDLQPLEKLDLRLFSKLKDEALLGSSHDTTYHFSLVLRDQEVKFKVESLESCEMWKGFILTVVELRVPSNLTLLPGHMYMMAEVLAKEEVRRAAEVPWCFLQVSRLEAQLLLERYPECGNLLLRPGGDGKDSVSVTTRQILNGSPVIKHYKVKREGSKYVIDVEDPFSCPSLEAVVNYFVTHTKRALVPFLLDEDYEKVLGFVDSDRENGENAWTVPSSRGSGPALPANVPKPLPPVPVSVSSQEDKLPQLPPLPQLPDQDENYVTPIEDSLATEYMNRDVSLSSQAVPLKPKKPARLPAKPPKPPVVPKPDLKAITNIWTRKLGGSSPQASSLVTRLGDITAELEEKLQKRRALEH", "length": 413 }, "evidence": [ { "id": "A0A287ASL6", "url": "https://omabrowser.org/oma/group/A0A287ASL6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7T2F4-1", "protein_name": "Signal-transducing adaptor protein 2a", "gene_name": "stap2a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAAPPSPRTGSPKAQLPPCYYEGYLEKRGAKEKVARRLWTCLCGNTLYFYNNPKDTHYVEKLDLSGFVSLIDDPSRDRNLEAARLNLRMKDGEIKLTAPSLEARELWKGFLYSVVDLAVPTTLTLLPGQLHMLREVVEKEKMRRKARASSRAPSSPLSLPLVGEIPACFRPVSRIEAEVLLERHPDCGNMLLRPGRDGSSLAVTTRQDLNGSVFRHYRVTQKQQGGYIIDVENPIPCPTLHDVINALVEKTAGTLQPFILEEPYEENITFVSSNDENGERTLHCAPTGFLSRAPSLPPKQVGTDKWSLRSQTRSPSPSPRSFSPSGSPSNSMRRLVLSPSPLSQSLTDELKQKLEKRRTSQE", "length": 363 }, "evidence": [ { "id": "A0A287ASL6", "url": "https://omabrowser.org/oma/group/A0A287ASL6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8R0L1-1", "protein_name": "Signal-transducing adaptor protein 2", "gene_name": "Stap2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATALSPPRGPKLKGAPPSHYYESFLEKKGPCDQDYRKFWAGLQGLAICFYNSNRDLQPLEKLDLRLFSKLRDEALLGSSRDTAYHFSLVLRDQEVKFKVESLESCEMWKGFILTVVELRVPSNLTLLPGHLYMMAEVLTKEEVRRAAEVPWCFLQVSRLEAQLLLERYPECGNLLLRPGGDGKDSVSVTTRQILNGSPVVKHYKVKRAGSKYVIDVEDPFSCPSLEAVVNYFVTHTKRALVPFLLDEDYEKVLGFVDSDRENGESAWAVPSFRASGPALPANVLKPLPPVPVSVSSQEDKLPQLPPLPQLPDTDENYVTPIEDSPAAEYMNQDVSLSSQAVPLKPKKPARLPAKPPKPSVVPKPDLKAITSVWTRKLGGSSSQASSLVTRLGDITAELEEKLQKRRALEH", "length": 411 }, "evidence": [ { "id": "A0A287ASL6", "url": "https://omabrowser.org/oma/group/A0A287ASL6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UGK3-1", "protein_name": "Signal-transducing adaptor protein 2", "gene_name": "STAP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASALRPPRVPKPKGVLPSHYYESFLEKKGPCDRDYKKFWAGLQGLTIYFYNSNRDFQHVEKLNLGAFEKLTDEIPWGSSRDPGTHFSLILRDQEIKFKVETLECREMWKGFILTVVELRVPTDLTLLPGHLYMMSEVLAKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVIDVEQPFSCTSLDAVVNYFVSHTKKALVPFLLDEDYEKVLGYVEADKENGENVWVAPSAPGPGPAPCTGGPKPLSPASSQDKLPPLPPLPNQEENYVTPIGDGPAVDYENQDVASSSWPVILKPKKLPKPPAKLPKPPVGPKPEPKVFNGGLGRKLPVSSAQPLFPTAGLADMTAELQKKLEKRRALEH", "length": 403 }, "evidence": [ { "id": "A0A287ASL6", "url": "https://omabrowser.org/oma/group/A0A287ASL6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling adaptor activity", "id": "GO:0035591", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035591", "evidence": [ { "database": "UniProtKB", "id": "A0A287ASL6", "url": "https://www.uniprot.org/uniprotkb/A0A287ASL6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287ASL6", "url": "https://www.uniprot.org/uniprotkb/A0A287ASL6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" }, { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ASL6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 462, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ASL6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ASL6" } ], "lectin_list": 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"evidence": [ { "id": "A0A287ARQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ARQ8", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EVI5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ8", "locus": { "chromosome": "4", "start_pos": 124600581, "end_pos": 124395315, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006901", "url": "https://www.ensembl.org/id/ENSSSCG00000006901" } ] } } ], "crossref": [ { "id": "A0A287ARQ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ARQ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006901", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006901", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519143", "url": "https://www.ncbi.nlm.nih.gov/gene/100519143", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519143", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519143", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR47219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27580", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27580", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZM40", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZM40-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARQ8", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S4G1", "url": "https://www.uniprot.org/uniprotkb/F1S4G1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S4G1-1", "url": "https://www.uniprot.org/uniprotkb/F1S4G1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVTTRMTAAFRNPSGKQVATDKVAEKLSSTLSWVKNTVSHTVSQMASQVASPSASLHTTSSSTTLSTPALSPSSPSQLSPDDLELLAKLEEQNRLLETDSKSLRSVNGSRRNSGSSLVSSSSASSNLSHLEEDSWILWGRIVNEWEEVRKKKEKQVKELVRKGIPHHFRAIVWQLLCSAQSMPIKDQYSELLKMTSPCEKLIRRDIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEEAFCVFVKLMQDYRLRELFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELMQLDMEGMLQHFQKVIPHQFDGGPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSFPDENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNTVNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVIHLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELQQHIAELEIQKEEGKLQGQLNKSDSNQYIRELKDQIAELNHELRCLKGQRGFSSQPPFDGIHIINHLMGDDESFHSSDEEFIDNSLQESGVGFPLHRKSGLMSLDPAVADGSESEAEDCALKPRGSSQAAQKERPPKRESYSTTV", "length": 809, "header": "tr|A0A287ARQ8-1|A0A287ARQ8_PIG Isoform 1 of Ecotropic viral integration site 5 OS=Sus scrofa OX=9823 GN=EVI5 PE=4 SV=2 CANONICAL=A0A287ARQ8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZM40-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ8/entry#A0A286ZM40-1", "sequence": { "sequence": "MASQVASPSASLHTTSSSTTLSTPALSPSSPSQLSPDDLELLAKLEEQNRLLETDSKSLRSVNGSRRNSGSSLVSSSSASSNLSHLEEDSWILWGRIVNEWEEVRKKKEKQVKELVRKGIPHHFRAIVWQLLCSAQSMPIKDQYSELLKMTSPCEKLIRRDIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEEAFCVFVKLMQDYRLRELFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELMQLDMEGMLQHFQKVIPHQFDGGPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSFPDENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNTVNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVIHLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELQQHIAELEIQKEEGKLQGQLNKSDSNQYIRELKDQIAELNHELRCLKGQRGFSSQPPFDGIHIINHLMGDDESFHSSDEEFIDNSLQESGVGFPLHRKSGLMSLDPAVADGSESEAEDCALKPRGSSQAAQKERPPKRESYSTTV", "length": 825, "header": "tr|A0A286ZM40-1|A0A287ARQ8_PIG Computationally mapped isoform of Ecotropic viral integration site 5 OS=Sus scrofa OX=9823 GN=EVI5 PE=4 SV=1 CANONICAL=A0A287ARQ8-1" }, "locus": { "chromosome": "4", "start_pos": 124596404, "end_pos": 124449023, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025428.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025428.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020009.4", "url": "https://www.ensembl.org/id/ENSSSCP00000020009.4" } ] } }, { "isoform_ac": "A0A287ARQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ8/entry#A0A287ARQ8-1", "sequence": { "sequence": "MVTTRMTAAFRNPSGKQVATDKVAEKLSSTLSWVKNTVSHTVSQMASQVASPSASLHTTSSSTTLSTPALSPSSPSQLSPDDLELLAKLEEQNRLLETDSKSLRSVNGSRRNSGSSLVSSSSASSNLSHLEEDSWILWGRIVNEWEEVRKKKEKQVKELVRKGIPHHFRAIVWQLLCSAQSMPIKDQYSELLKMTSPCEKLIRRDIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEEAFCVFVKLMQDYRLRELFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELMQLDMEGMLQHFQKVIPHQFDGGPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSFPDENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNTVNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVIHLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELQQHIAELEIQKEEGKLQGQLNKSDSNQYIRELKDQIAELNHELRCLKGQRGFSSQPPFDGIHIINHLMGDDESFHSSDEEFIDNSLQESGVGFPLHRKSGLMSLDPAVADGSESEAEDCALKPRGSSQAAQKERPPKRESYSTTV", "length": 809, "header": "tr|A0A287ARQ8-1|A0A287ARQ8_PIG Isoform 1 of Ecotropic viral integration site 5 OS=Sus scrofa OX=9823 GN=EVI5 PE=4 SV=2 CANONICAL=A0A287ARQ8-1" }, "locus": { "chromosome": "4", "start_pos": 124596404, "end_pos": 124395365, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061059.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061059.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046773.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046773.2" } ] } }, { "isoform_ac": "F1S4G1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ8/entry#F1S4G1-1", "sequence": { "sequence": "MVTTRMTAAFRNPSGKQVATDKVAEKLSSTLSWVKNTVSHTVSQMASQVASPSASLHTTSSSTTLSTPALSPSSPSQLSPDDLELLAKLEEQNRLLETDSKSLRSVNGSRRNSGSSLVSSSSASSNLSHLEEDSWILWGRIVNEWEEVRKKKEKQVKELVRKGIPHHFRAIVWQLLCSAQSMPIKDQYSELLKMTSPCEKLIRRDIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEEAFCVFVKLMQDYRLRELFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELMQLDMEGMLQHFQKVIPHQFDGGPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSFPDENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNTVNELQDELMTIRLREAETQAEIREIKQRMMEMETQNQINSNHLRRAEQEVIHLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELQQHIAELEIQKEEGKLQGQLNKSDSNQYIRELKDQIAELNHELRCLKGQRGFSSQPPFDGIHIINHLMGDDESFHSSDEEFIDNSLQESGVGFPLHRKSGLMSLDPAVADGSESEAEDCALKPRGSSQAAQKERPPKRESYSTTV", "length": 820, "header": "tr|F1S4G1-1|A0A287ARQ8_PIG Computationally mapped isoform of Ecotropic viral integration site 5 OS=Sus scrofa OX=9823 GN=EVI5 PE=4 SV=4 CANONICAL=A0A287ARQ8-1" }, "locus": { "chromosome": "4", "start_pos": 124596404, "end_pos": 124395365, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007557.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007557.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007357.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007357.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZM40", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM40" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519143", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519143", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARQ8", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ8" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARQ8", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARQ8", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrograde transport, endosome to Golgi", "id": "GO:0042147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042147", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARQ8", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" }, { "start_pos": 495, "end_pos": 497, "annotation": 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"Ensembl Peptide", "id": "ENSSSCP00000046561.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046561.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZMR3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMR3" } ], "reference": [ { "type": 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"https://bgee.org/?page=gene&gene_id=ENSSSCG00000011710", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100622221", "url": "https://www.ncbi.nlm.nih.gov/gene/100622221", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011387", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011387", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100622221", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622221", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RCCAYSP", "url": "https://omabrowser.org/oma/group/RCCAYSP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AUH4", "url": "https://www.orthodb.org/?gene=A0A287AUH4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13227", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13227", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13227:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13227:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08662", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08662", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020925259", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925259", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZPR5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZPR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPR5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUH4", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFU4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFU4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSX9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAB3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDJ0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJN5", "url": "https://www.uniprot.org/uniprotkb/F1SJN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJN5-1", "url": "https://www.uniprot.org/uniprotkb/F1SJN5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPSAPLLTVRGSEGLYLVNGPPHFTESTVFPRESGKNCKAYTFSKDGTLFAWGNGERINVINVTTKELLHSFDLPKAVCLEFSPKNTILATWQPYTTSKDGAAGIPNLQLYDMKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDGPHAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSVLHKYDVPSNAELWQVSWQPFLDGIFPEKSITYQAVPSDVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQNMKPQPGNEKPLSKTALKNQRKHEAKKAAKQEARSDKSPDMAPSPAPQNTPRNTVSHSTSGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQLEKIQKEKALLQELEDLELGI", "length": 585, "header": "tr|A0A287AUH4-1|A0A287AUH4_PIG Isoform 1 of Eukaryotic translation initiation factor 2A OS=Sus scrofa OX=9823 GN=EIF2A PE=1 SV=1 CANONICAL=A0A287AUH4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZPR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4/entry#A0A286ZPR5-1", "sequence": { "sequence": "MAPSAPLLTVRGSEGLYLVNGPPHFTESTVFPRINVINVTTKELLHSFDLPKAVCLEFSPKNTILATWQPYTTSKDGAAGIPNLQLYDMKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDGPHAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSVLHKYDVPSNAELWQVSWQPFLDGIFPEKSITYQAVPSDVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQNMKPQPGNEKPLSKTALKNQRKHEAKKAAKQEARSDKSPDMAPSPAPQNTPRNTVSHSTSGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQLEKIQKEKALLQELEDLELGI", "length": 560, "header": "tr|A0A286ZPR5-1|A0A287AUH4_PIG Computationally mapped isoform of Eukaryotic translation initiation factor 2A OS=Sus scrofa OX=9823 GN=EIF2A PE=1 SV=2 CANONICAL=A0A287AUH4-1" }, "locus": { "chromosome": "13", "start_pos": 90803591, "end_pos": 90761657, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055153.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055153.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033590.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033590.2" } ] } }, { "isoform_ac": "A0A287AUH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4/entry#A0A287AUH4-1", "sequence": { "sequence": "MAPSAPLLTVRGSEGLYLVNGPPHFTESTVFPRESGKNCKAYTFSKDGTLFAWGNGERINVINVTTKELLHSFDLPKAVCLEFSPKNTILATWQPYTTSKDGAAGIPNLQLYDMKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDGPHAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSVLHKYDVPSNAELWQVSWQPFLDGIFPEKSITYQAVPSDVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQNMKPQPGNEKPLSKTALKNQRKHEAKKAAKQEARSDKSPDMAPSPAPQNTPRNTVSHSTSGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQLEKIQKEKALLQELEDLELGI", "length": 585, "header": "tr|A0A287AUH4-1|A0A287AUH4_PIG Isoform 1 of Eukaryotic translation initiation factor 2A OS=Sus scrofa OX=9823 GN=EIF2A PE=1 SV=1 CANONICAL=A0A287AUH4-1" }, "locus": { "chromosome": "13", "start_pos": 90803591, "end_pos": 90761657, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055679.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055679.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047764.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047764.1" } ] } }, { "isoform_ac": "A0A5G2QFU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4/entry#A0A5G2QFU4-1", "sequence": { "sequence": "ELPYAAGAALKTSKDGAAGIPNLQLYDMKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDGPHAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSVLHKYDVPSNAELWQVSWQPFLDGIFPEKSITYQAVPSDVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQNMKPQPGNEKPLSKTALKNQRKHEAKKAAKQEARSDKSPDMAPSPAPQNTPRNTVSHSTSGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQVCSAFFFFFFLGPHLQHMEVPSLGVESEL", "length": 507, "header": "tr|A0A5G2QFU4-1|A0A287AUH4_PIG Computationally mapped isoform of Eukaryotic translation initiation factor 2A OS=Sus scrofa OX=9823 GN=EIF2A PE=1 SV=1 CANONICAL=A0A287AUH4-1" }, "locus": { "chromosome": "13", "start_pos": 90802162, "end_pos": 90781647, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083852.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083852.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063607.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063607.1" } ] } }, { "isoform_ac": "A0A5G2QSX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4/entry#A0A5G2QSX9-1", "sequence": { "sequence": "MAPSAPLLTVRGSEGLYLVNGPPHFTESTVFPRESGKNCKAYTFSKDGTLFAWGNGERINVINVTTKELLHSFDLPKAVCLEFSPKNTILATWQPYTNTIANKLHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDGPHAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSVLHKYDVPSNAELWQVSWQPFLDGIFPEKSITYQAVPSDVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQNMKPQPGNEKPLSKTALKNQRKHEAKKAAKQEARSDKSPDMAPSPAPQNTPRNTVSHSTSGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQLEKIQKEKALLQELEDLELGI", "length": 524, "header": "tr|A0A5G2QSX9-1|A0A287AUH4_PIG Computationally mapped isoform of Eukaryotic translation initiation factor 2A OS=Sus scrofa OX=9823 GN=EIF2A PE=1 SV=1 CANONICAL=A0A287AUH4-1" }, "locus": { "chromosome": "13", "start_pos": 90803591, "end_pos": 90761657, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076688.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076688.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068036.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068036.1" } ] } }, { "isoform_ac": "A0A5G2RAB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4/entry#A0A5G2RAB3-1", "sequence": { "sequence": "MVPSRILRGSEGLYLVNGPPHFTESTVFPRYESGKNCKAYTFSKDGTLFAWGNGERINVINVTTKELLHSFDLPKAVCLEFSPKNTILATWQPYTTSKDGAAGIPNLQLYDMKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDGPHAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSVLHKYDVPSNAELWQVSWQPFLDGIFPEKSITYQAVPSDVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQNMKPQPGNEKPLSKTALKNQRKHEAKKAAKQEARSDKSPDMAPSPAPQNTPRNTVSHSTSGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQVCSAFFFFFFLGPHLQHMEVPSLGVESEL", "length": 591, "header": "tr|A0A5G2RAB3-1|A0A5G2RAB3_PIG Computationally mapped isoform of Eukaryotic translation initiation factor 2A OS=Sus scrofa OX=9823 GN=EIF2A PE=1 SV=1 CANONICAL=A0A287AUH4-1" }, "locus": { "chromosome": "13", "start_pos": 90802162, "end_pos": 90767997, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088468.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088468.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073972.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073972.1" } ] } }, { "isoform_ac": "A0A8W4FDJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4/entry#A0A8W4FDJ0-1", "sequence": { "sequence": "MAPSAPLLTVRGSEGLYLVNGPPHFTESTVFPRESGKNCKAYTFSKDGTLFAWGNGERINVINVTTKELLHSFDLPKAVCLEFSPKNTILATWQPYTTSKDGAAGIPNLQLYDMKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDGPHAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSVLHKYDVPSNAELWQVSWQPFLDGIFPEKSITYQAVPSDVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQNMKPQPGNEKPLSKTALKNQRKHEAKKAAKQEARSDKSPDMAPSPAPQNTPRNTVSHSTSGDPEIDKKIKNLKKLEKIQKEKALLQELEDLELGI", "length": 563, "header": "tr|A0A8W4FDJ0-1|A0A287AUH4_PIG Computationally mapped isoform of Eukaryotic translation initiation factor 2A OS=Sus scrofa OX=9823 GN=EIF2A PE=1 SV=1 CANONICAL=A0A287AUH4-1" }, "locus": { "chromosome": "13", "start_pos": 90803591, "end_pos": 90761657, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104795.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104795.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077480.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077480.1" } ] } }, { "isoform_ac": "F1SJN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4/entry#F1SJN5-1", "sequence": { "sequence": "MAPSAPLLTVRGSEGLYLVNGPPHFTESTVFPRESGKNCKAYTFSKDGTLFAWGNGERINVINVTTKELLHSFDLPKAVCLEFSPKNTILATWQPYTTSKDGAAGIPNLQLYDMKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDGPHAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSVLHKYDVPSNAELWQVSWQPFLDGIFPEKSITYQAVPSDVPSEEPKVATAYRPPALRNKPVTNSKLEARSDKSPDMAPSPAPQNTPRNTVSHSTSGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQLEKIQKEKALLQELEDLELGI", "length": 547, "header": "tr|F1SJN5-1|A0A287AUH4_PIG Computationally mapped isoform of Eukaryotic translation initiation factor 2A OS=Sus scrofa OX=9823 GN=EIF2A PE=1 SV=4 CANONICAL=A0A287AUH4-1" }, "locus": { "chromosome": "13", "start_pos": 90803591, "end_pos": 90761657, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012820.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012820.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012482.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012482.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFU4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFU4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622221", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622221", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GH40-1", "protein_name": "Eukaryotic translation initiation factor 2A", "gene_name": "Eif2a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSFRDKMAPSTPLLTVRGSEGLYMVNGPPHFTESTVLPREPGKNCKVYTFSKDGTLFAWSNGEKVNIINVANKGLLHSFDLPKAVCLEFSPNNTVLATWQPYTTSKDGTAGTPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSDDEIICARNVNNEVHFFENNNFNSACFLREPRAMCLKYQEKAPQTCLQSDLIETVPQKVFLDTIANKLHLQKVNDFNLSPGTQPFKVAVYVPGSKGAPSFVRLYQYPNFAGPQAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVAWNPSSTEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAFYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSLLYKYDVPSNGELWQVSWQPFLDGIFPAKTITYQAVPSEVPSEEPKVATAYRPPALRNKPVTSSKLHEEEPPQNMKPHPSSDKPLSKTALKNQRKHEAKKAAKQEARNDLAPTPVPQSAPRSTVTQSASGDPEVDKKIKNLKKKLKAIEQLKEQAAAGKQLEKNQLEKIQKETALLQELEDLELGV", "length": 628 }, "evidence": [ { "id": "A0A287AUH4", "url": "https://omabrowser.org/oma/group/A0A287AUH4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AAA9SB04-1", "protein_name": "Eukaryotic translation initiation factor 2A", "gene_name": "EIF2A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAPSTPLLTVRGSEGLYMVNGPPHFTESTVFPRESGKNCKAYTFSKDGTLFAWGNGEKINVISVTKKGLLHSFDLPKAVCLEFSPKNTVLATWQPYTASKDDTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDEPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKKYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSVLHKYDVPSNAELWQVSWQPFLDGIFPEKAITYQVVPSDVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQNMKPQPGNEKPLSKTALKNQRKHEAKKAAKQEARIDKSPDMPPAPAQQSTPRSTISQSTSGDPETDRKIKNLKKKLRAIEQLKEQAAAGKQLEKNQVFSAFFIWAHSYYHPSPFYYKQLFNQIKEYIDFKTSFEIRKDRGIRGSW", "length": 613 }, "evidence": [ { "id": "A0A287AUH4", "url": "https://omabrowser.org/oma/group/A0A287AUH4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P53235-1", "protein_name": "Eukaryotic translation initiation factor 2A", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSSQFFLKTSQDIELFQSYPTFEQSNTNSKDFPVISSVLSPCGRFLALSTKENVKVFTGPCLDNVLLTMKLSDVYDLHFSPAGNYLSTWERASIQDPNHKNVKVWYLNKPFKKDCVSEDIVPAYEYQAKSQSGWFLQFSKLDNYGLRLFKHDLKIVKLSSANADNFDFQSPFAVLSDDETSQHFTTYLISPAEHPTICTFTPEKGGKPAQLIIWALSEGKITKKIASKTFFKADSCQLKWNPLGNAILCLAITDFDSSNKSYYGENTLYLLSFQGVNGTLGGNSVRVSLTTGPVHDFTWSPTSRQFGVIAGYMPATISFFDLRGNVVHSLPQQAKNTMLFSPSGHYILIAGFGNLQGSVEILDRLDKFKCVSKFDATNTSVCKWSPGGEFIMTATTSPRLRVDNGVKIWHVSGSLVFVKEFKELLKVDWRSPCNYKTLENKDEAFFENHIINNWEPLPDSTTSSLDPKISNKSELQIHSSVQEYISQHPSREASSNGNGSKAKAGGAYKPPHARRTGGGRIVPGVPPGAAKKTIPGLVPGMSANKDANTKNRRRRANKKSSETSPDSTPAPSAPASTNAPTNNKETSPEEKKIRSLLKKLRAIETLKERQAVGDKLEDTQVLKIQTEEKVLKDLEKLGWKDE", "length": 642 }, "evidence": [ { "id": "A0A287AUH4", "url": "https://omabrowser.org/oma/group/A0A287AUH4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q5ZKC1-1", "protein_name": "Eukaryotic translation initiation factor 2A", "gene_name": "EIF2A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPPAPLLAVRGSEGLFMVNGPPSFTESAVFQRDSGRNCKAVAFSKDGSLFAWCNGEKVNIVNVTSAGLLRSFDLPKVVCLEFSPKNNILATWQAYSAAKDGTAGAPNLQLYDVKTGKCLKSFIQKKMQNWCPCWADDESICARNVNNEVHFFENNNFNTIANKLHLQKVNDFVLSPGAQPTKVAVYVPGSKGAPSFVRLYQYPNFGGPQSALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAIVQLPKNGPIYDVVWNPNSVEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHIVTATCAPRLRVSNGYKIWHYTGSVLHNYEVPSNEEMWQVSWQPFLDGVFPVKAVKYQAVPSELPSAEPKPAQAYRPPALRNKPVTSSKLHEDEPPQNMKPQSGSSEKPLSKTALKNQKKHEPKKAAKQEAKADCSQESTQSSASQNTPRSAVPVVTSGDPEIDKKIKNLKKKLKAIEQLKEQAAAGKQLEKNQLEKIQKESALLQELEDLELGL", "length": 586 }, "evidence": [ { "id": "A0A287AUH4", "url": "https://omabrowser.org/oma/group/A0A287AUH4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8BJW6-1", "protein_name": "Eukaryotic translation initiation factor 2A", "gene_name": "Eif2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPSTPLLTVRGSEGLYMVNGPPHFTESTVLPRESGRNCKVYTFSKDGTLFAWSNGEKVNIINVANKGLLHSFDLPKAVCLEFSPNNTVLATWQPYTTSKDGTAGTPNLQLYDMKTGACLKSFIQKKMQNWCPSWSDDEIICARNVNNEVHFFENNNFNTIANKLHLQKVNDFNLSPGTQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPQAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAFYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSLLHKYDVPSNGELWQVSWQPFLDGIFPAKTIKYQAVPSEVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQNMKPHPGSDKPLSKTALKNQRKHEAKKAAKQEARSDAAPTPVPQSAPRNTVTQSASGDPEVDKKIKNLKKKLKAIEQLKEQAAAGKQLEKNQLEKIQKETALLQELEDLELGV", "length": 581 }, "evidence": [ { "id": "A0A287AUH4", "url": "https://omabrowser.org/oma/group/A0A287AUH4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BY44-1", "protein_name": "Eukaryotic translation initiation factor 2A", "gene_name": "EIF2A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPSTPLLTVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELEDLELGI", "length": 585 }, "evidence": [ { "id": "A0A287AUH4", "url": "https://omabrowser.org/oma/group/A0A287AUH4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CAT3-1", "protein_name": "Eukaryotic translation initiation factor 2A", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSSPSLEILVREAEGFTVWNGPPFTNGQPTLKLERVSCSNTKFSVDGSKLMAMKSDGVISIYDATSLTEVRSFTIANVTAAELSPCGTYLQTFQKPTTPQEKNVSIWNTETGDLAHSHYQKSITKASWPSIRFCPDESSACRLATNEVQFFDPKDFSKGITSRIRVPGIAAFELSKTPASHVAVFVPESKGSPGSVQIFGCGEELQSQPSARRSFFRCSSVQFSWNHGSTGLLVVVQSDVDKTNQSYYGETKLHYLTIDGTHEGLVPLRKEGPVHDVQWSFSGSEFAVVYGFMPACVTIFDKNCKPLMELGEGPYNTLRWNPKGRVLCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYFLTASTAPRRQIDNGMKIFNYDGKRYYKKMFERLYQAEWKPESPERFGDISELIKSVESLKLGEGKSQGQGSAQKKTIAPNPIAQKPAAYRPPHAKHAAAVQAELLGISTTGEMSKNALKNKKKRENKKAAAAAAAASGSNNA", "length": 513 }, "evidence": [ { "id": "A0A287AUH4", "url": "https://omabrowser.org/oma/group/A0A287AUH4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VNX8-1", "protein_name": "Eukaryotic translation initiation factor 2A", "gene_name": "eIF2A", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAAAADLVVPTLAIRSSVAVELWSSAGSKQPFEHKPHLPREETKSSRSICFSSNGRYFAYSNGQEVKVLQASRDSAASWPVICVLPRPKAFYLQFSPRGSYLCTWEHYAITKDRPEGSPNLLVYEVATGVEVFAIVQKNQADWQPSWSADESIFALVVGGEALFYDLGEGAEKGFATTSRKIGGSRGGMLSLGPGNCPPFLAFYTPGAKGAPSMCKLYKYPALGQNQTVACKSFFQADRVEMLWNKRGSGLLLLTSTEVDKSGASYYGNQAVHFMATKGDTCSVPLSKEGPVHCVKWSPKATEFVVVYGFMPSKAALYNLKCDVVFDFGEGPRNCAYFNPFGNLIALAGFGNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTATTAPRLRISNGFKVYHYSGALLHETMWPQGQELLGIEWQQFADKTFSEPKITKAKHEGIKSSQPEASKKAYTPPHLRLLKEGKNPEKYLPQPSIPGLAPTAAAGGVNGNKRNNKNKQRSARKDVNVVNGGDADSAPTEVVDQAAPVARQSPVFVAAEERKPQHTPRQKYQPDNAADQPPNSYGQGHPNGQHISDKERKIRSVAKKLSDIKKLKVRRSQGENLELNQLNKIKMEAQYLDELKALKQSA", "length": 638 }, "evidence": [ { "id": "A0A287AUH4", "url": "https://omabrowser.org/oma/group/A0A287AUH4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of translation", "id": "GO:0006417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006417", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUH4", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4" } ], "pmid": "" }, { "name": "translational initiation", "id": "GO:0006413", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006413", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUH4", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4" } ], "pmid": "" }, { "name": "ribosome assembly", "id": "GO:0042255", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042255", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUH4", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "tRNA binding", "id": "GO:0000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000049", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUH4", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4" } ], "pmid": "" }, { "name": "ribosome binding", "id": "GO:0043022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043022", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUH4", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4" } ], "pmid": "" }, { "name": "translation initiation factor activity", "id": "GO:0003743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003743", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUH4", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUH4", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "eukaryotic translation initiation factor 2 complex", "id": "GO:0005850", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005850", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUH4", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AUH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH4" }, { "id": "PF08662", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08662" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Translation initiation factor beta propellor-like", "eco_id": "ECO_0000259", "start_pos": 216, "end_pos": 411, "start_aa": "Lys", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 215, "end_pos": 217 }, { "start_pos": 282, "end_pos": 284 }, { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AZF6-1", "uniprot_ac": "A0A287AZF6", "uniprot_id": "A0A287AZF6_PIG", "mass": { "chemical_mass": 35587.0, "monoisotopic_mass": 35587.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287AZF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AZF6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AZF6", "url": "https://www.uniprot.org/uniprotkb/A0A287AZF6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287AZF6", "locus": {} } ], "crossref": [ { "id": "A0A287AZF6", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AZF6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000029596", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029596", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04982", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04982", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07697", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07697", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003597", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003597", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051117", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051117", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19256", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19256", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19256:SF64", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19256:SF64", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07654", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07654", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZRE4", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZRE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRE4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZF6", "url": "https://www.uniprot.org/uniprotkb/A0A287AZF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZF6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LG28", "url": "https://www.uniprot.org/uniprotkb/I3LG28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LG28-1", "url": "https://www.uniprot.org/uniprotkb/I3LG28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LTH1", "url": "https://www.uniprot.org/uniprotkb/I3LTH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LTH1-1", "url": "https://www.uniprot.org/uniprotkb/I3LTH1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMALLEAVVFSFFWAVGLGMLRLEQPEISITAARQKSALIACKVSSENFNDAYIHWYRHKSDQGMEHLMYHVTVFTLSHLGEKKNKLEARKIASTSTATLKINFLEQEDEATYYCASWFYPQYSRWIKIFGEGTKLIVTPPDRNLAADMSPKPTIFLPSIAEINLHNTGTHLCLLEKFFPDAIKVYWKEKNGNTVLDSQQGDVIQTNDTYMKFSWLTVTQKSADKEHICIVKHENNKRGTDQEILFPSMNKEVTTDVCLKDTSGTMQLQLTNTSAYYTYLLLLLKSALYFAIITYCLFRETTVCSAWKRS", "length": 310, "header": "tr|A0A287AZF6-1|A0A287AZF6_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287AZF6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZRE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZF6/entry#A0A286ZRE4-1", "sequence": { "sequence": "MSVLEAFTFLSFWALGLSLSRVEQSQISVSAEVKKSVDINCKIESTNFPTEAVHWYRQRMNQALEHLIFVSSVTVPAQSQIGGKSNKVVARKNSQTFTSTLTVNFIEKEDEGIYYCAGWWPDYVKVFGDGTKLAVTDRNLAADMSPKPTIFLPSIAEINLHNTGTHLCLLEKFFPDAIKVYWKEKNGNTVLDSQQGDVIQTNDTYMKFSWLTVTQKSADKEHICIVKHENNKRGTDQEILFPSMNKEVTTDVCLKDTSGTMQLQLTNTSAYYTYLLLLLKSALYFAIITYCLFRETTVCSAWKRS", "length": 305, "header": "tr|A0A286ZRE4-1|A0A287AZF6_PIG Computationally mapped isoform of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287AZF6-1" }, "locus": { "chromosome": "9", "start_pos": 108784225, "end_pos": 108760278, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052644.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052644.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034193.3", "url": "https://www.ensembl.org/id/ENSSSCP00000034193.3" } ] } }, { "isoform_ac": "A0A287AZF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZF6/entry#A0A287AZF6-1", "sequence": { "sequence": "MMALLEAVVFSFFWAVGLGMLRLEQPEISITAARQKSALIACKVSSENFNDAYIHWYRHKSDQGMEHLMYHVTVFTLSHLGEKKNKLEARKIASTSTATLKINFLEQEDEATYYCASWFYPQYSRWIKIFGEGTKLIVTPPDRNLAADMSPKPTIFLPSIAEINLHNTGTHLCLLEKFFPDAIKVYWKEKNGNTVLDSQQGDVIQTNDTYMKFSWLTVTQKSADKEHICIVKHENNKRGTDQEILFPSMNKEVTTDVCLKDTSGTMQLQLTNTSAYYTYLLLLLKSALYFAIITYCLFRETTVCSAWKRS", "length": 310, "header": "tr|A0A287AZF6-1|A0A287AZF6_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287AZF6-1" }, "locus": { "chromosome": "9", "start_pos": 108782398, "end_pos": 108760278, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047539.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047539.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049242.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049242.2" } ] } }, { "isoform_ac": "I3LG28-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZF6/entry#I3LG28-1", "sequence": { "sequence": "MALLEAVVFSFFWAVGLGMLRLEQPEISITAARQKSALIACKVSSENFNDAYIHWYRHKSDQGMEHLMYHVTVFTLSHLGEKKNKLEARKIASTSTATLKINFLEQEDEATYYCIESLWPDYVKVFGDGTKLAVTDRNLAADMSPKPTIFLPSIAEINLHNTGTHLCLLEKFFPDAIKVYWKEKNGNTVLDSQQGDVIQTNDTYMKFSWLTVTQKSADKEHICIVKHENNKRGTDQEILFPSMNKEVTTDVCLKDTSGTMQLQLTNTSAYYTYLLLLLKSALYFAIITYCLFRETTVCSAWKRS", "length": 304, "header": "tr|I3LG28-1|A0A287AZF6_PIG Computationally mapped isoform of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=A0A287AZF6-1" }, "locus": { "chromosome": "9", "start_pos": 108782395, "end_pos": 108760278, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023367.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023367.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023021.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023021.3" } ] } }, { "isoform_ac": "I3LTH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZF6/entry#I3LTH1-1", "sequence": { "sequence": "MSVLEAFTFLSFWALGLSLSRVEQSQISVSAEVKKSVDINCKIESTNFPTEAVHWYRQRMNQALEHLIFVSSVTVPAQSQIGGKSNKVVARKNSQTFTSTLTVNFIEKEDEGIYYCAGCDSSRWIKIFGEGTKLIVTPPDRNLAADMSPKPTIFLPSIAEINLHNTGTHLCLLEKFFPDAIKVYWKEKNGNTVLDSQQGDVIQTNDTYMKFSWLTVTQKSADKEHICIVKHENNKRGTDQEILFPSMNKEVTTDVCLKDTSGTMQLQLTNTSAYYTYLLLLLKSALYFAIITYCLFRETTVCSAWKRS", "length": 308, "header": "tr|I3LTH1-1|A0A287AZF6_PIG Computationally mapped isoform of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287AZF6-1" }, "locus": { "chromosome": "9", "start_pos": 108784225, "end_pos": 108760278, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027664.3", "url": "https://www.ensembl.org/id/ENSSSCT00000027664.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027418.2", "url": "https://www.ensembl.org/id/ENSSSCP00000027418.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LG28", "url": "https://www.uniprot.org/uniprotkb/I3LG28" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZF6", "url": "https://www.uniprot.org/uniprotkb/A0A287AZF6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" }, { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AZF6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 310, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AZF6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AZF6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AZF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AZF6" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 26, "end_pos": 115, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 207, "end_pos": 209 }, { "start_pos": 272, "end_pos": 274 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AWR1-1", "uniprot_ac": "A0A287AWR1", "uniprot_id": "A0A287AWR1_PIG", "mass": { "chemical_mass": 65695.0, "monoisotopic_mass": 65695.0 }, "refseq": { "ac": "XP_005673269", "name": "solute carrier family 13 member 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673269" }, "gene_names": [ { "name": "SLC13A1", "type": "recommended", "evidence": [ { "id": "A0A287AWR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1" } ] }, { "name": "SLC13A1", "type": "synonym", "evidence": [ { "id": "XP_005673269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673269" } ] } ], "protein_names": [ { "name": "Solute carrier family 13 member 1", "type": "synonym", "evidence": [ { "id": "A0A287AWR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1/entry#names_and_taxonomy" } ] }, { "name": "solute carrier family 13 member 1", "type": "synonym", "evidence": [ { "id": "XP_005673269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673269" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AWR1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC13A1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1", "locus": { "chromosome": "18", "start_pos": 24219235, "end_pos": 24011108, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016609", "url": "https://www.ensembl.org/id/ENSSSCG00000016609" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016609", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016609", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513574", "url": "https://www.ncbi.nlm.nih.gov/gene/100513574", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031312", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031312", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513574", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513574", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "THIMAHT", "url": "https://omabrowser.org/oma/group/THIMAHT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AWR1", "url": "https://www.orthodb.org/?gene=A0A287AWR1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10283", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10283", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10283:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10283:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00939", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00939", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-433137", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-433137", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005673269", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673269", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZRI7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZRI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWR1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480L086", "url": "https://www.uniprot.org/uniprotkb/A0A480L086", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480L086-1", "url": "https://www.uniprot.org/uniprotkb/A0A480L086-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RB17", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RB17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RB17-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RB17-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1N504", "url": "https://www.uniprot.org/uniprotkb/A0A8D1N504", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1N504-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1N504-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1TJW7", "url": "https://www.uniprot.org/uniprotkb/A0A8D1TJW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1TJW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1TJW7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKVSYVLVYRRLLLVVFTLLFLLPLPIILGTKEAECAYTLFVVAMFWLTEALPLSVTALLPGLMFPLFGIMPSKEVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMTVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQIINAEAEVEATQMTYFSGSTNLGLETDESVNGHETNERKEKTKPVAGYRNEAGKISGKMELEKNSGTGNKYRTKKDHMMCKLMCLCIAYSSTIGGLTTITGTSTNLIFAEHFNMRYPDCHCINFGSWFIMSFPAAIIILLLSWIWLQWLFLGFNFKEMFQCDKTGTAKQKACAEVIKQEYQKLGPIRYQEIVTLVLFIVMAVLWFSRDPGFVPGWSALFSQYPGFATDSTVALLVGLLFFLIPAKRLTKTTPTGETVAFDYSPLITWKEFQSFMPWDIAILVGGGFALADGCEESGLSKWIGNKLSPLGSLPVWLIILISSLFVTSLTEVASNPATITLLLPILAPLAEAIHVNPLYILLPSTLCTSFAFLLPVANPPNAIVFSYGHLTVIDMVKAGLGVNVLGVAVVMLGLFVWMVPMFDLHTYPSWAPTIANETLP", "length": 594, "header": "tr|A0A287AWR1-1|A0A287AWR1_PIG Isoform 1 of Solute carrier family 13 member 1 OS=Sus scrofa OX=9823 GN=SLC13A1 PE=3 SV=1 CANONICAL=A0A287AWR1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZRI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1/entry#A0A286ZRI7-1", "sequence": { "sequence": "MFWLTEALPLSVTALLPGLMFPLFGIMPSKEVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMTVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQIINAEAEVEATQMTYFSGSTNLGLETDESVNGHETNERKEKTKPVAGYRNEAGKISGKMELEK", "length": 175, "header": "tr|A0A286ZRI7-1|A0A287AWR1_PIG Computationally mapped isoform of Solute carrier family 13 member 1 OS=Sus scrofa OX=9823 GN=SLC13A1 PE=3 SV=3 CANONICAL=A0A287AWR1-1" }, "locus": { "chromosome": "18", "start_pos": 24168175, "end_pos": 24154827, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065469.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065469.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034243.3", "url": "https://www.ensembl.org/id/ENSSSCP00000034243.3" } ] } }, { "isoform_ac": "A0A287AWR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1/entry#A0A287AWR1-1", "sequence": { "sequence": "MKVSYVLVYRRLLLVVFTLLFLLPLPIILGTKEAECAYTLFVVAMFWLTEALPLSVTALLPGLMFPLFGIMPSKEVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMTVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQIINAEAEVEATQMTYFSGSTNLGLETDESVNGHETNERKEKTKPVAGYRNEAGKISGKMELEKNSGTGNKYRTKKDHMMCKLMCLCIAYSSTIGGLTTITGTSTNLIFAEHFNMRYPDCHCINFGSWFIMSFPAAIIILLLSWIWLQWLFLGFNFKEMFQCDKTGTAKQKACAEVIKQEYQKLGPIRYQEIVTLVLFIVMAVLWFSRDPGFVPGWSALFSQYPGFATDSTVALLVGLLFFLIPAKRLTKTTPTGETVAFDYSPLITWKEFQSFMPWDIAILVGGGFALADGCEESGLSKWIGNKLSPLGSLPVWLIILISSLFVTSLTEVASNPATITLLLPILAPLAEAIHVNPLYILLPSTLCTSFAFLLPVANPPNAIVFSYGHLTVIDMVKAGLGVNVLGVAVVMLGLFVWMVPMFDLHTYPSWAPTIANETLP", "length": 594, "header": "tr|A0A287AWR1-1|A0A287AWR1_PIG Isoform 1 of Solute carrier family 13 member 1 OS=Sus scrofa OX=9823 GN=SLC13A1 PE=3 SV=1 CANONICAL=A0A287AWR1-1" }, "locus": { "chromosome": "18", "start_pos": 24211784, "end_pos": 24136603, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054622.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054622.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048334.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048334.1" } ] } }, { "isoform_ac": "A0A480L086-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1/entry#A0A480L086-1", "sequence": { "sequence": "MLALAGVCRSNQSSMEAECAYTLFVVAMFWLTEALPLSVTALLPGLMFPLFGIMPSKEVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMTVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQIINAEAEVEATQMTYFSGSTNLGLETDESVNGHETNERKEKTKPVAGYRNEAGKISGKMELEKNSGTGNKYRTKKDHMMCKLMCLCIAYSSTIGGLTTITGTSTNLIFAEHFNMRYPDCHCINFGSWFIMSFPAAIIILLLSWIWLQWLFLGFNFKEMFQCDKTGTAKQKACAEVIKQEYQKLGPIRYQEIVTLVLFIVMAVLWFSRDPGFVPGWSALFSQYPGFATDSTVALLVGLLFFLIPAKRLTKTTPTGETVAFDYSPLITWKEFQSFMPWDIAILVGGGFALADGCEESGLSKWIGNKLSPLGSLPVWLIILISSLFVTSLTEVASNPATITLLLPILAPLAEAIHVNPLYILLPSTLCTSFAFLLPVANPPNAIVFSYGHLTVIDMVKAGLGVNVLGVAVVMLGLFVWMVPMFDLHTYPSWAPTIANETLP", "length": 577, "header": "tr|A0A480L086-1|A0A480L086_PIG Computationally mapped isoform of Solute carrier family 13 member 1 OS=Sus scrofa OX=9823 GN=SLC13A1 PE=3 SV=1 CANONICAL=A0A287AWR1-1" }, "locus": { "chromosome": "18", "start_pos": 24211784, "end_pos": 24134520, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070999.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070999.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062265.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062265.1" } ] } }, { "isoform_ac": "A0A5G2RB17-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1/entry#A0A5G2RB17-1", "sequence": { "sequence": "MKVSYVLVYRRLLLVVFTLLFLLPLPIILGTKEAECAYTLFVVAMFWLTEALPLSVTALLPGLMFPLFGIMPSKEVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMTVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQIINAEAEVEATQMTYFSGSTNLGLETDESVNGHETNERKEKTKPVAGYRNEAGKISGKMELEKNSGTGNKYRTKKDHMMCKLMCLCIAYSSTIGGLTTITGTSTNLIFAEHFNMRYPDCHCINFGSWFIMSFPAAIIILLLSWIWLQWLFLGFNFKEMFQCDKTGTAKQKACAEVIKQEYQKLGPIRYQEIVTLVLFIVMAVLWFSRDPGFVPGWSALFSQYPGFATDSTVALLVGLLFFLIPAKRLTKTTPTGETVAFDYSPLITWKEFQSFMPWDIAILVGGGFALADGCEESGLSKWIGNKLSPLGSLPVWLIILISSLFVTSLTEVASNPATITLLLPILAPLAEAIHVNPLYILLPSTLCTSFAKDKNKLPMGKPKRKRN", "length": 541, "header": "tr|A0A5G2RB17-1|A0A287AWR1_PIG Computationally mapped isoform of Solute carrier family 13 member 1 OS=Sus scrofa OX=9823 GN=SLC13A1 PE=3 SV=2 CANONICAL=A0A287AWR1-1" }, "locus": { "chromosome": "18", "start_pos": 24212839, "end_pos": 24136603, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081870.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081870.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074530.2", "url": "https://www.ensembl.org/id/ENSSSCP00000074530.2" } ] } }, { "isoform_ac": "A0A8D1N504-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1/entry#A0A8D1N504-1", "sequence": { "sequence": "MKVSYVLVYRRLLLVVFTLLFLLPLPIILGTKEAECAYTLFVVAMFWLTEALPLSVTALLPGLMFPLFGIMPSKEVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMTVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQIINAEAEVEATQMTYFSGSTNLGLETDESVNGHETNERKEKTKPVAGYRNEAGKISGKMELEKNSGTGNKYRTKKDHMMCKLMCLCIAYSSTIGGLTTITGTSTNLIFAEHFNIFKEMFQCDKTGTAKQKACAEVIKQEYQKLGPIRYQEIVTLVLFIVMAVLWFSRDPGFVPGWSALFSQYPGFATDSTVALLVGLLFFLIPAKRLTKTTPTGETVAFDYSPLITWKEFQSFMPWDIAILVGGGFALADGCEESGLSKWIGNKLSPLGSLPVWLIILISSLFVTSLTEVASNPATITLLLPILAPLAEAIHVNPLYILLPSTLCTSFAFLLPVANPPNAIVFSYGHLTVIDMVKAGLGVNVLGVAVVMLGLFVWMVPMFDLHTYPSWAPTIANETLP", "length": 554, "header": "tr|A0A8D1N504-1|A0A287AWR1_PIG Computationally mapped isoform of Solute carrier family 13 member 1 OS=Sus scrofa OX=9823 GN=SLC13A1 PE=3 SV=1 CANONICAL=A0A287AWR1-1" }, "locus": { "chromosome": "18", "start_pos": 24211784, "end_pos": 24136603, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088903.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088903.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072669.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072669.1" } ] } }, { "isoform_ac": "A0A8D1TJW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1/entry#A0A8D1TJW7-1", "sequence": { "sequence": "MKVSYVLVYRRLLLVVFTLLFLLPLPIILGTKEAECAYTLFVVAMFWLTEALPLSVTALLPGLMFPLFGIMPSKEVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMTVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQIINAEAEVEATQMTYFSGSTNLGLETDESVNGHETNERKEKTKPVAGYRNEAGKISGKMELEKNSGTGNKYRTKKDHMMCKLMCLCIAYSSTIGGLTTITGTSTNLIFAEHFNMRYPDCHCINFGSWFIMSFPAAIIILLLSWIWLQWLFLGFNFKEMFQCDKTGTAKQKACAEVIKQEYQKLGPIRYQEIVTLVLFIVMAVLWFSRDPGFVPGWSALFSQYPGFATDSTVALLVGLLFFLIPAKRLTKTTPTGETGSLPVWLIILISSLFVTSLTEVASNPATITLLLPILAPLAEAIHVNPLYILLPSTLCTSFAFLLPVANPPNAIVFSYGHLTVIDMVKAGLGVNVLGVAVVMLGLFVWMVPMFDLHTYPSWAPTIANETLP", "length": 542, "header": "tr|A0A8D1TJW7-1|A0A287AWR1_PIG Computationally mapped isoform of Solute carrier family 13 member 1 OS=Sus scrofa OX=9823 GN=SLC13A1 PE=3 SV=1 CANONICAL=A0A287AWR1-1" }, "locus": { "chromosome": "18", "start_pos": 24211784, "end_pos": 24136603, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018083.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018083.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017594.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017594.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RB17", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RB17" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513574", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513574", "resource": "KEGG Pathway" }, { "id": "R-SSC-433137", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-433137", "resource": "Reactome", "description": "Sodium-coupled sulphate, di- and tri-carboxylate transporters" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LMT7-1", "protein_name": "Solute carrier family 13 member 1", "gene_name": "Slc13a1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKLLNYALVYRRFLLVILSVLLLLPLPLSIRSKEAECAYVLFVVAIFWITEALPLSITALLPGLMFPMFGIMASTHVASSYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMMVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQIISAEAEAEATQMTYFNESAAHGLEVDETDIGQETNERKEKTKPVPGSSNDTGKVSSKVETEKNSVTGAKYRSKRDHMLCKLMCLSIAYSSTIGGLTTLTGTSTNLIFSEHFNTRYPDCRCLNFGSWFLFSFPVAIILLLLSWIWLQWLFLGFNFKEMFKCGKTKTLKEKACAEVIKQEYEKLGPIRYQEIVTLVIFVVMALLWFSRDPGFVTGWSVLFSEYPGYVTDSTVALVAGLLFFLIPAKKLTKTTSSGEIVAFDYSPLITWKEFQSFMPWDIAILVGGGFALADGCQESGLSSWIGSKLSPLGSLPNWLIILISSLMVTSLTEVASNPATITILFPILSPLAEAIHVNPLYILLPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNILGVAVVMLGVFTWMDSMFNLNEYPSWAPDFVNQTMP", "length": 595 }, "evidence": [ { "id": "A0A287AWR1", "url": "https://omabrowser.org/oma/group/A0A287AWR1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q07782-1", "protein_name": "Solute carrier family 13 member 1", "gene_name": "Slc13a1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLLNYAFVYRRFLLVVFTVLVLLPLPLIIRSKEAECAYILFVIATFWITEALPLSITALLPGLMFPMFGIMSSTHVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMMVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQITSAEAEAEATQMTYFNESAAQGLEVDETIIGQETNERKEKTKPALGSSNDKGKVSSKMETEKNTVTGAKYRSKKDHMMCKLMCLCIAYSSTIGGLTTITGTSTNLIFSEHFNTRYPDCRCLNFGSWFLFSFPVAVILLLLSWIWLQWLFLGFNFKEMFKCGKTKTLKEKACAEVIKQEYEKLGPMRYQEIVTLVIFIVMALLWFSRDPGFVTGWSVLFSEYPGYVTDSTVALVAGILFFLIPAKKLTKMTSTGDIIAFDYSPLITWKEFQSFMPWDIAILVGGGFALADGCQVSGLSSWIGSKLSPLGSLPVWLIILISSLIVTSLTEVASNPATITILFPILSPLAEAIHVNPLHILLPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNILGVAVVMLGMFTWIEPMFNLHEYPSWAPDIVNQTMP", "length": 595 }, "evidence": [ { "id": "A0A287AWR1", "url": "https://omabrowser.org/oma/group/A0A287AWR1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9BZW2-1", "protein_name": "Solute carrier family 13 member 1", "gene_name": "SLC13A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFSYILVYRRFLFVVFTVLVLLPLPIVLHTKEAECAYTLFVVATFWLTEALPLSVTALLPSLMLPMFGIMPSKKVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALKMVMMVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIAEAVVQQIINAEAEVEATQMTYFNGSTNHGLEIDESVNGHEINERKEKTKPVPGYNNDTGKISSKVELEKNSGMRTKYRTKKGHVTRKLTCLCIAYSSTIGGLTTITGTSTNLIFAEYFNTRYPDCRCLNFGSWFTFSFPAALIILLLSWIWLQWLFLGFNFKEMFKCGKTKTVQQKACAEVIKQEYQKLGPIRYQEIVTLVLFIIMALLWFSRDPGFVPGWSALFSEYPGFATDSTVALLIGLLFFLIPAKTLTKTTPTGEIVAFDYSPLITWKEFQSFMPWDIAILVGGGFALADGCEESGLSKWIGNKLSPLGSLPAWLIILISSLMVTSLTEVASNPATITLFLPILSPLAEAIHVNPLYILIPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNIVGVAVVMLGICTWIVPMFDLYTYPSWAPAMSNETMP", "length": 595 }, "evidence": [ { "id": "A0A287AWR1", "url": "https://omabrowser.org/oma/group/A0A287AWR1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JHI4-1", "protein_name": "Solute carrier family 13 member 1", "gene_name": "Slc13a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLLNYALVYRRFLLVVFTILVFLPLPLIIRTKEAQCAYILFVIAIFWITEALPLSITALLPGLMFPMFGIMRSSQVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMMVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQIISAEAEAEATQMTYFNESAAHGLDIDETVIGQETNEKKEKTKPAPGSSHDKGKVSRKMETEKNAVTGAKYRSRKDHMMCKLMCLSVAYSSTIGGLTTITGTSTNLIFSEHFNTRYPDCRCLNFGSWFLFSFPVALILLLLSWIWLQWLYLGFDFKMFKCGKTKTLKEKACAKVIKQEYEKLGPMRYQEIVTLVIFIVMALLWFSRDPGFVTGWSVLFSEYPGYVTDSTVALVAGILFFLIPAKKVTKMTSAGEIIAFDYTPLITWKEFQSFMPWDIAILVGGGFALADGCQVSGLSNWIGSKLSPLGSLPVWLIILISSLIVTSLTEVASNPATITILFPILSPLAEAIQVNPLQILLPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNILGVAVVMLGMFTWIEPMFNLHEYPSWASNFVNQTMP", "length": 594 }, "evidence": [ { "id": "A0A287AWR1", "url": "https://omabrowser.org/oma/group/A0A287AWR1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VDQ0-1", "protein_name": "Protein I'm not dead yet 2", "gene_name": "Indy2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAEPGEQRKFVLGRCCIFHWRGKASIIIPLITLPILIYGFQTDMAEFKCLWLIVTMALLWITETLPIYVTALFPLVFCPLLGLVNASIVCKQYFTDTIVVFLGGLIVALGIEYSNLHTRIALRVIRIVGGSPRRLFVGLMSVSTFMGLWISNSAGTAMMCPIVKALVNELDTNKIFPVYMTQEEEPVEEGEPPHPSKITVAFYAGIAYASSIGGLGTLIGTGTNLVFRGIYTERFPTSTVEITFANFMFYSIPLMVIVNVTLVIIAFLITHMGLFRPNSKTGKIIAEANTNRKLMEDVLRQRHIDLGPMSCHEIQMAIAFAFMIVLLITRKPGFVPGWSDLINRKVVGSASGLSFIVLLIFALPTQYTFFKYCCGKGPFTAQAIDAILSWEYVLRNIPWGLLFLLGGGFALAVASRETGLNIMISKAMQVLIGLPNIVVQSITFVLANFFSAFNANVVVANIVLPILCEMSLALELHPLILTLPACLGISMVYFLPVSTPPNAIVTQYAHIKTKYFACCGIVPTIIGISVALVNTNTWGLIIFPESKSFPDWAKEIKNQTKI", "length": 562 }, "evidence": [ { "id": "A0A287AWR1", "url": "https://omabrowser.org/oma/group/A0A287AWR1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "solute:sodium symporter activity", "id": "GO:0015370", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015370", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWR1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1" } ], "pmid": "" }, { "name": "sodium:sulfate symporter activity", "id": "GO:0015382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015382", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWR1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWR1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWR1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWR1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "sodium ion transport", "id": 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}, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048604.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048604.1" } ] } }, { "isoform_ac": "A0A5G2QEU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AXD6/entry#A0A5G2QEU3-1", "sequence": { "sequence": "MAAEIHSRPQSSRPVLLSKIEGHQDAVTAAQLIPKEDGVITASEDRTIRVWLKRDSGQYWPSIYHTMASPCSAMAYHHDSRRIFVGQDNGAVMEFHISEDFNKMNFIKTYPAHQNRVSAIIFSLAAEWVISTGHDKCVSWMCTRSGNMLGKHFFTSWASCLQGASGSPKCYEIAIWRFFCCYVITLLKLEQNTCSVITTLKGHEGGIACLWWEPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHQCVAVGVGGERIRGRARWRGSLSYREAPQWLESDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLATFHEGKHNISHMSMDVARGLMVTCGTDRVVKIWDMTPVVGCSLATGFSPH", "length": 405, "header": "tr|A0A5G2QEU3-1|A0A287AXD6_PIG Computationally mapped isoform of WD repeat and FYVE domain-containing protein 1 OS=Sus scrofa OX=9823 GN=WDFY1 PE=1 SV=2 CANONICAL=A0A287AXD6-1" }, "locus": { "chromosome": "15", "start_pos": 125720133, "end_pos": 125674289, "strand": "+", "evidence": [ { "database": 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"chromosome": "15", "start_pos": 125720133, "end_pos": 125674289, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029006.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029006.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021461.3", "url": "https://www.ensembl.org/id/ENSSSCP00000021461.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEU3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157180", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157180", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K3L8-1", "protein_name": "WD repeat and FYVE domain-containing protein 1", "gene_name": "Wdfy1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAEIHSRPQSSRPVLLSKIEGHQDAVTAALLIPKEDGVITASEDRTIRVWLKRDSGQYWPSIYHTMASPCSAMAYHHDSRRVFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIVFSLAAEWVVSTGHDKCVSWMCTRSGNMLGRHFFSSWASCLQYDLDTQHAFVGDYSGQITLLKLEQNSCSVITTLKGHEGSIACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHHDRVQSLCYLQLTRQLVSCSADGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLATFHEGKHNISHMSMDIARGLMVTCGTDRVVKIWDMTPVVGCSLATGFSPH", "length": 410 }, "evidence": [ { "id": "A0A287AXD6", "url": "https://omabrowser.org/oma/group/A0A287AXD6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9Q4P1-1", "protein_name": "WD repeat and FYVE domain-containing protein 1", "gene_name": "Wdfy1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"MAAEIHSRPQSSRPVLLSKIEGHQDAVTAALLIPKEDGVITASEDRTIRVWLKRDSGQYWPSIYHTMASPCSAMAYHHDSRRIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVTAIIFSLATEWVISTGHDKCVSWMCTRSGNMLGRHFFSSWASCLQYDFDTQYAFVGDYSGQITLLKLEQSTCSVITTLKGHEGSIACLWWDPIQRLLFSGASDNSVIMWDIGGRKGRTLLLQGHHDRVQALCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLATFHEGKHNISHMSMDVARGLMVTCGTDRVVKIWDMTPVVGCSLATGFSPH", "length": 410 }, "evidence": [ { "id": "A0A287AXD6", "url": "https://omabrowser.org/oma/group/A0A287AXD6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8IWB7-1", "protein_name": "WD repeat and FYVE domain-containing protein 1", "gene_name": "WDFY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAEIHSRPQSSRPVLLSKIEGHQDAVTAALLIPKEDGVITASEDRTIRVWLKRDSGQYWPSIYHTMASPCSAMAYHHDSRRIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIIFSLATEWVISTGHDKCVSWMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQITLLKLEQNTCSVITTLKGHEGSVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHHDKVQSLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLATFHEGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH", "length": 410 }, "evidence": [ { "id": "A0A287AXD6", "url": "https://omabrowser.org/oma/group/A0A287AXD6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of toll-like receptor 3 signaling pathway", "id": "GO:0034141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034141", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXD6", "url": "https://www.uniprot.org/uniprotkb/A0A287AXD6" } ], "pmid": "" }, { "name": "positive regulation of toll-like receptor 4 signaling pathway", "id": "GO:0034145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034145", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXD6", "url": "https://www.uniprot.org/uniprotkb/A0A287AXD6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXD6", "url": "https://www.uniprot.org/uniprotkb/A0A287AXD6" } ], "pmid": "" }, { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXD6", "url": "https://www.uniprot.org/uniprotkb/A0A287AXD6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXD6", "url": 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"MCEMSLSFTDVAIDLSQEEWECLDLDQRALFREVMLENYRNLVSLGCPTPKPDVITLLEQEKEPWVVMREGTRNWYTDLESKYVTNKLFPEKDICEIYLSQLKIVNKSKTYMHEDTTFRNDMQCKHEFGRQGHQMKCARQMIIQKHISLPLHQKIHAIEKSYECKECRKAFRQQSYLIQHLRIHTGERPYKCKECGKAFCRVGDLRVHQTIHAGERPYECNNCGKTFRLHYHLTEHKRIHSGVKPHACKECGKAFSRVRDLKVHQTIHAGERPYECKDCGKTFRLHYQLTEHQRIHTGERPYKCKICGKTFRVQRHISQHQKIHTGVKPYKCNDCGKAFSHGSYLVQHQKIHTGDKPYECKECGKSFSFHAELTRHHRIHTGEKPYECKECGKAFRLQTELTRHCRIHTGEKPYECKECGKAFICGYQLTLHLRAHTGEIPYECKECGKTFSSRYHLTQHYRIHTGEKPYGCKECGKAFRLQAELTRHHRIHTCEKPYECKECGKAFIRSNQLISHQRIHTNENTYECKECGKIFSRRYNLTQHYKIHTGEKPYLCKECGKVFRFQTELTQHRRIHTGEKPYKCQECGKAFIRSNHLTQHHRIHTGEKPYECKECGKTFSRHYHLTQHHRIHTGEKPYRCNECGEAFICSYQLTLHQRIHTGEIPYECKECGKTFSRRYHLTQHFRLHTGEKPYGCKECGDAFRLQAELTRHHTVHTGEKPYKCQECEKAFSVKSELTRHHRIHTGERPYKCKECGKAFIRSDQLTLHQRNHINEVTLCLM", "length": 781, "header": "tr|A0A287AY65-1|A0A287AY65_PIG Isoform 1 of Zinc finger protein 546 OS=Sus scrofa OX=9823 GN=ZNF546 PE=3 SV=2 CANONICAL=A0A287AY65-1" }, "isoforms": [ { "isoform_ac": "A0A287AY65-1", "url": 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GN=ZNF546 PE=3 SV=2 CANONICAL=A0A287AY65-1" }, "locus": { "chromosome": "6", "start_pos": 48429688, "end_pos": 48419465, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059258.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059258.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049089.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049089.2" } ] } }, { "isoform_ac": "A0A8W4FIQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY65/entry#A0A8W4FIQ8-1", "sequence": { "sequence": 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"locus": { "chromosome": "6", "start_pos": 48429688, "end_pos": 48422885, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097590.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097590.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079117.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079117.1" } ] } }, { "isoform_ac": "F1RHD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY65/entry#F1RHD5-1", "sequence": { "sequence": 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"start_pos": 48429688, "end_pos": 48422964, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003319.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003319.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003237.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003237.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FIQ8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIQ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AY65", "url": "https://www.uniprot.org/uniprotkb/A0A287AY65" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": 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"name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AY65", "url": "https://www.uniprot.org/uniprotkb/A0A287AY65" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A287AY65", "url": "https://www.uniprot.org/uniprotkb/A0A287AY65" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A287AY65", "url": "https://www.uniprot.org/uniprotkb/A0A287AY65" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", 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"https://www.orthodb.org/?gene=F1RQM9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31640", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31640", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31640:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31640:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF20413", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20413", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25039", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25039", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25040", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25040", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ATK3", "url": "https://www.uniprot.org/uniprotkb/A0A287ATK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ATK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATK3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQM9", "url": "https://www.uniprot.org/uniprotkb/F1RQM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQM9-1", "url": "https://www.uniprot.org/uniprotkb/F1RQM9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQRKNESIVPSITQLEDFLTEHNSNVVWLLVATILSCGWIIYLTYYNSRNVGLILTLVLNRLYKRGYIHIGSFSFSVLSGKVMVREIYYITEDLSIRIQDGFIIFRWWKMYNPKQKQHDPKAETRLYITVNDFEFHVYNRSGLYGRLQELFGLEQTIIPPKKEDDKTRENGRTRTQSKIERVKVKTESQDPTSSWRSLIPVIKVNVSTGRLAFGNHYQPQTLCINFDDAFLTYTTKPPSSHLDQFMHIVKGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEEAEENIEGEMSSEDCKLQDLPPCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNVGAGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDSAPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTKFSLRGEDVDLHLFLPDCHPSKYSLFMLVKNCHPNKMAHDTGIPAECQSGQKTVKPKWRNITQEKAGWVECWTVPSVMLTIDYTWHPIYPQKADEQLKQSLSEMEETMLSVLRPSQKTDRVVSSPSTTSRPPVDPSELPPDKLHVEMELSPDSQITLYGPLLNAFLCIKENYFGEDDMYMDFEEVISSPVLSLSTSSSSGWTAVGMENDKKENENSAKSIHPLTLRPWDITVLVNLYKVHGRLPVHGTTDGPECPTAFLERLCFEMKKGFRETMLQLVLSPLNVFVSDNYQQRPPVDEVLREGHINLSGLQLRAHAMFSAEGLPLGSDSLEYAWLIDVQAGSLTAKVTAPQLACLLEWGQTFVFHVVCREYELERPKSVIVCQHGIDRRFCESKLSCIPGPCPTSDDLKYTMTRLAVDGADIYIVEHGCATNIKMGAIRVANCNLHNQSVGEGISAAIQDFQVRQYIEQLNNSRVGLQPAVLRRAYWLEAGSANLGLITVDIALAADHHSKHEAQRHFLVTHDTRTKRLWFLWPDDTLKNKRCRNKCGCLGGCRFFGGTVTGLDFFKLEELTPSSSSAFSSTSAESDMYYGQSLLQPGEWIITKEVPKIVDGNVNGLKRKEWENKSVGIEVERKTQHLSLQVPLRSHSSSSSSEETSSSSAAQPLLAGEKESPSSVADDHLVQKEFLHGAKRDDGQVSIPTEISGNSPVSPNTQDKSVGQSPLRSPLKRQASVCSTRLGSTKSLTAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSADSNSFHQYRSMDSSMSMADSEAYFSAAEEFEPISSDEGPGTYPGRKKKKKQAQQIDYSRGSIYHSVEGPLTGHGESIQDPRTLPFKTHPSQASFVSALGGEDDVIEHLYVVENEKTVESEQITSQQPVMNCYQTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSLLDRGMQLSGSTSNTPYTPLEKKAVDNTDDETLTEEWTLDQPVSQTRTTAIVEVKGTVDIVLTPLVAEALDRYIEAMVHYASTRHPAAIVDDLHVKVLREAVQNSKTTFSENLSSKQDIRGTKTEHTTIGMTNQGQAQTNIMKQDNVTIKGLQANVSIPKVNLCLLQASVEESPSTAPSRSVTHVSLVALCFDRITTQVRMNRGVVEETSNSAEPGRTTNFDRYVHATKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFAFVDETDQQAVPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNTFGIMGKANVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDLNGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPTHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIEDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPQSAVDHEHEDGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRPGVPIKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNAMATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQVVFKPLLSHTGIQSQDAMPLCYRMYFGEHLSFSGTLDCLRADIVDSDTAKERKGKRARRQGHVNLPPLEFKPALMLETFSISAVVMEKSVCTPQNSTSALSFHDLNKRYYNTFHCNFTISCQSISQHVDMALVRLIHQFSTMIDDIKATQTDIKLSRYTAGSASPTPTFKTRKHRDFRSSDFSRSSRGSLNGGNRVNNAKNKRTNNENNKKESRNKNSLGRSERRTSKVSRKGSKDVVDHMTIHMDDSDSITVSEQSEPSAECWQNMYKLLNFYSLISDPTGILEKSSETFGPAGVRSPTEPTCKVVFENEQDSNSLTKTQRKRSLVTAEPQHVTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGVNIVLLEGITPNIQLEDFPTSPTSTAKQEFLTVVKCSIAKSQALYSAQRGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPVKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAESSSAGTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTEAVDYRRQGASCSQPGELRGRKIMKRIVDIRELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWSLGYKPSYSRSKSISASGRPPLKRMERASSRVGETEELPEIRVDAASPGPRVTFNIQDTFPEETELDLLSVTIEGSSHYSSNSEGSYSVFSSPKTPGGFSPGISFQPEEGRRDDSLSSTSDDSEKDEKDEDHERERFYIYRKPSHASRKKATGFAAVHQLFTEHWPTAPVNRSLSGTATERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQESPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTESPNASRGSSLPRTLSKESKLYGMKDSATSPPSPPLPCTVQSKTNTLLPPQPPPLPSAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPVERNYTTVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELETLGTTYPAETLSPGGNAPQSGSKTSASKTGIPGSSGLGSPLGRSRHSSSQSDLTSSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKTAVSGLTPGSGGLGNVDEEPTSVTGRKDSLSINLEFVKVSLSRIRRSGGASFFESQSVSKSASKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQTINLPTSGPGTPDSIEGVSQHLSPESSRKAYCRTWEQPSQSASFTHMPQSPNVFNEHVTNSTMSPGAAAQSLKSPASVRSRSVSDSSVPRRDSLSKTSTPFNKSNKAASQQGTPWETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTEARVDYMGSSILMGIFSNADLKLQDEWKVNLYNTLDSSMTDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGPVPYLPPKTVTNNLEKSSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHNTMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNTENSTTVKNSSLLSGFRGGSSYNHETETIFALPRMQLDFKSIHVQEPQEPSLQDASLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSPVIIHDENSSDKDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKLGTALQDEKEKKGKDKEEH", "length": 5003, "header": "tr|A0A287ATK3-1|A0A287ATK3_PIG Isoform 1 of Bridge-like lipid transfer protein family member 1 OS=Sus scrofa OX=9823 GN=BLTP1 PE=4 SV=2 CANONICAL=A0A287ATK3-1" }, "isoforms": [ { "isoform_ac": "A0A287ATK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATK3/entry#A0A287ATK3-1", "sequence": { "sequence": "MDQRKNESIVPSITQLEDFLTEHNSNVVWLLVATILSCGWIIYLTYYNSRNVGLILTLVLNRLYKRGYIHIGSFSFSVLSGKVMVREIYYITEDLSIRIQDGFIIFRWWKMYNPKQKQHDPKAETRLYITVNDFEFHVYNRSGLYGRLQELFGLEQTIIPPKKEDDKTRENGRTRTQSKIERVKVKTESQDPTSSWRSLIPVIKVNVSTGRLAFGNHYQPQTLCINFDDAFLTYTTKPPSSHLDQFMHIVKGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEEAEENIEGEMSSEDCKLQDLPPCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNVGAGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDSAPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTKFSLRGEDVDLHLFLPDCHPSKYSLFMLVKNCHPNKMAHDTGIPAECQSGQKTVKPKWRNITQEKAGWVECWTVPSVMLTIDYTWHPIYPQKADEQLKQSLSEMEETMLSVLRPSQKTDRVVSSPSTTSRPPVDPSELPPDKLHVEMELSPDSQITLYGPLLNAFLCIKENYFGEDDMYMDFEEVISSPVLSLSTSSSSGWTAVGMENDKKENENSAKSIHPLTLRPWDITVLVNLYKVHGRLPVHGTTDGPECPTAFLERLCFEMKKGFRETMLQLVLSPLNVFVSDNYQQRPPVDEVLREGHINLSGLQLRAHAMFSAEGLPLGSDSLEYAWLIDVQAGSLTAKVTAPQLACLLEWGQTFVFHVVCREYELERPKSVIVCQHGIDRRFCESKLSCIPGPCPTSDDLKYTMTRLAVDGADIYIVEHGCATNIKMGAIRVANCNLHNQSVGEGISAAIQDFQVRQYIEQLNNSRVGLQPAVLRRAYWLEAGSANLGLITVDIALAADHHSKHEAQRHFLVTHDTRTKRLWFLWPDDTLKNKRCRNKCGCLGGCRFFGGTVTGLDFFKLEELTPSSSSAFSSTSAESDMYYGQSLLQPGEWIITKEVPKIVDGNVNGLKRKEWENKSVGIEVERKTQHLSLQVPLRSHSSSSSSEETSSSSAAQPLLAGEKESPSSVADDHLVQKEFLHGAKRDDGQVSIPTEISGNSPVSPNTQDKSVGQSPLRSPLKRQASVCSTRLGSTKSLTAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSADSNSFHQYRSMDSSMSMADSEAYFSAAEEFEPISSDEGPGTYPGRKKKKKQAQQIDYSRGSIYHSVEGPLTGHGESIQDPRTLPFKTHPSQASFVSALGGEDDVIEHLYVVENEKTVESEQITSQQPVMNCYQTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSLLDRGMQLSGSTSNTPYTPLEKKAVDNTDDETLTEEWTLDQPVSQTRTTAIVEVKGTVDIVLTPLVAEALDRYIEAMVHYASTRHPAAIVDDLHVKVLREAVQNSKTTFSENLSSKQDIRGTKTEHTTIGMTNQGQAQTNIMKQDNVTIKGLQANVSIPKVNLCLLQASVEESPSTAPSRSVTHVSLVALCFDRITTQVRMNRGVVEETSNSAEPGRTTNFDRYVHATKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFAFVDETDQQAVPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNTFGIMGKANVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDLNGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPTHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIEDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPQSAVDHEHEDGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRPGVPIKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNAMATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQVVFKPLLSHTGIQSQDAMPLCYRMYFGEHLSFSGTLDCLRADIVDSDTAKERKGKRARRQGHVNLPPLEFKPALMLETFSISAVVMEKSVCTPQNSTSALSFHDLNKRYYNTFHCNFTISCQSISQHVDMALVRLIHQFSTMIDDIKATQTDIKLSRYTAGSASPTPTFKTRKHRDFRSSDFSRSSRGSLNGGNRVNNAKNKRTNNENNKKESRNKNSLGRSERRTSKVSRKGSKDVVDHMTIHMDDSDSITVSEQSEPSAECWQNMYKLLNFYSLISDPTGILEKSSETFGPAGVRSPTEPTCKVVFENEQDSNSLTKTQRKRSLVTAEPQHVTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGVNIVLLEGITPNIQLEDFPTSPTSTAKQEFLTVVKCSIAKSQALYSAQRGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPVKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAESSSAGTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTEAVDYRRQGASCSQPGELRGRKIMKRIVDIRELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWSLGYKPSYSRSKSISASGRPPLKRMERASSRVGETEELPEIRVDAASPGPRVTFNIQDTFPEETELDLLSVTIEGSSHYSSNSEGSYSVFSSPKTPGGFSPGISFQPEEGRRDDSLSSTSDDSEKDEKDEDHERERFYIYRKPSHASRKKATGFAAVHQLFTEHWPTAPVNRSLSGTATERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQESPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTESPNASRGSSLPRTLSKESKLYGMKDSATSPPSPPLPCTVQSKTNTLLPPQPPPLPSAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPVERNYTTVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELETLGTTYPAETLSPGGNAPQSGSKTSASKTGIPGSSGLGSPLGRSRHSSSQSDLTSSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKTAVSGLTPGSGGLGNVDEEPTSVTGRKDSLSINLEFVKVSLSRIRRSGGASFFESQSVSKSASKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQTINLPTSGPGTPDSIEGVSQHLSPESSRKAYCRTWEQPSQSASFTHMPQSPNVFNEHVTNSTMSPGAAAQSLKSPASVRSRSVSDSSVPRRDSLSKTSTPFNKSNKAASQQGTPWETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTEARVDYMGSSILMGIFSNADLKLQDEWKVNLYNTLDSSMTDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGPVPYLPPKTVTNNLEKSSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHNTMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNTENSTTVKNSSLLSGFRGGSSYNHETETIFALPRMQLDFKSIHVQEPQEPSLQDASLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSPVIIHDENSSDKDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKLGTALQDEKEKKGKDKEEH", "length": 5003, "header": "tr|A0A287ATK3-1|A0A287ATK3_PIG Isoform 1 of Bridge-like lipid transfer protein family member 1 OS=Sus scrofa OX=9823 GN=BLTP1 PE=4 SV=2 CANONICAL=A0A287ATK3-1" }, "locus": { "chromosome": "8", "start_pos": 101921269, "end_pos": 101737601, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065880.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065880.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047271.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047271.2" } ] } }, { "isoform_ac": "F1RQM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATK3/entry#F1RQM9-1", "sequence": { "sequence": "MDQRKNESIVPSITQLEDFLTEHNSNVVWLLVATILSCGWIIYLTYYNSRNVGLILTLVLNRLYKRGYIHIGSFSFSVLSGKVMVREIYYITEDLSIRIQDGFIIFRWWKMYNPKQKQHDPKAETRLYITVNDFEFHVYNRSGLYGRLQELFGLEQTIIPPKKEDDKTRENGRTRTQSKIERVKVKTESQDPTSSWRSLIPVIKVNVSTGRLAFGNHYQPQTLCINFDDAFLTYTTKPPSSHLDQFMHIVKGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEEAEENIEGEMSSEDCKLQDLPPCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRETNAVHVNVGAGSYLEINIPMTVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDWSSDSAPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDCSTKQQENVYLAACGETLNIDFSLPFTDFVPATCNTKFSLRGEDVDLHLFLPDCHPSKYSLFMLVKNCHPNKMAHDTGIPAECQSGQKTVKPKWRNITQEKAGWVECWTVPSVMLTIDYTWHPIYPQKADEQLKQSLSEMEETMLSVLRPSQKTDRVVSSPSTTSRPPVDPSELPPDKLHVEMELSPDSQITLYGPLLNAFLCIKENYFGEDDMYMDFEEVISSPVLSLSTSSSSGWTAVGMENDKKENENSAKSIHPLTLRPWDITVLVNLYKVHGRLPVHGTTDGPECPTAFLERLCFEMKKGFRETMLQLVLSPLNVFVSDNYQQRPPVDEVLREGHINLSGLQLRAHAMFSAEGLPLGSDSLEYAWLIDVQAGSLTAKVTAPQLACLLEWGQTFVFHVVCREYELERPKSVIVCQHGIDRRFCESKLSCIPGPCPTSDDLKYTMTRLAVDGADIYIVEHGCATNIKMGAIRVANCNLHNQSVGEGISAAIQDFQVRQYIEQLNNSRVGLQPAVLRRAYWLEAGSANLGLITVDIALAADHHSKHEAQRHFLVTHDTRTKRLWFLWPDDTLKNKRCRNKCGCLGGCRFFGGTVTGLDFFKLEELTPSSSSAFSSTSAESDMYYGQSLLQPGEWIITKEVPKIVDGNVNGLKRKEWENKSVGIEVERKTQHLSLQVPLRSHSSSSSSEETSSSSAAQPLLAGEKESPSSVADDHLVQKEFLHGAKRDDGQVSIPTEISGNSPVSPNTQDKSVGQSPLRSPLKRQASVCSTRLGSTKSLTAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSADSNSFHQYRSMDSSMSMADSEAYFSAAEEFEPISSDEGPGTYPGRKKKKKQAQQIDYSRGSIYHSVEGPLTGHGESIQDPRTLPFKTHPSQASFVSALGGEDDVIEHLYVVENEKTVESEQITSQQPVMNCYQTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEESSSSFEQLSVPTFKVIKQGLTANSLLDRGMQLSGSTSNTPYTPLEKKAVDNTDDETLTEEWTLDQPVSQTRTTAIVEVKGTVDIVLTPLVAEALDRYIEAMVHYASTRHPAAIVDDLHVKVLREAVQNSKTTFSENLSSKQDIRGTKTEHTTIGMTNQGQAQTNIMKQDNVTIKGLQANVSIPKVNLCLLQASVEESPSTAPSRSVTHVSLVALCFDRITTQVRMNRGVVEETSNSAEPGRTTNFDRYVHATKMQPQSSGSLRSNAGAEKGKEIAAKLNIHRVHGQLRGLDTTDIGTCAITAIPFEKSKVLFTLEELDEFAFVDETDQQAVPDVTRIGPSQEKWGWIMFECGLENLTIKGGRQSGAVLYNTFGIMGKANVTERGGVLTSNNSSDSPTGSGYNTDVSDDNLPCDRTSPSSDLNGNSVSDEQDEGVESDDLKKDLPLMPPPPDSCSMKLTIKEIWFSFAAPTNVRSPTHAFSRQLNLLSTATPAVGAWLVPIDQLKSSLNKLETEGTLRICAVMGCIMTEALENKSVHFPLRSKYNRLTKVARFLQENPSCLLCNILHHYLHQANYSIIEDATMSDGLPALVTLKKGLVALARQWMKFIVVTPAFKGVSLHRPAQPLKPQSAVDHEHEDGLGLDNGGGLQSDTSADGAEFEFDAATVSEHTMLLEGTANRPPPGSSGPVTGAEIMRKLSKTHTHSDSALKIKGIHPYHSLSYTSGDTATDSPVHVGRPGVPIKESPRKESLLSYLTGSFPSLHNLLEGTPQRSSAAVKSSSLTRTGNAMATDMLSEHPLLSEPSSVSFYNWMSNAVGNRGSVVQESPVTKSGHNSLPTGVAPNLPTIPSASDFNTVLSSDQNTLDGTHSQHSTSQDDVAGVEEANQGFPAVQLADAQVVFKPLLSHTGIQSQDAMPLCYRMYFGEHLSFSGTLDCLRADIVDSDTAKERKGKRARRQGHVNLPPLEFKPALMLETFSISAVVMEKSVCTPQNSTSALSFHDLNKRYYNTFHCNFTISCQSISQHVDMALVRLIHQFSTMIDDIKATQTDIKLSRYTAGSASPTPTFKTRKHRDFRSSDFSRSSRGSLNGGNRVNNAKNKRTNNENNKKESRNKNSLGRSERRTSKVSRKGSKDVVDHMTIHMDDSDSITVSEQSEPSAECWQNMYKLLNFYSLISDPTGILEKSSETFGPAGVRSPTEPTCKVVFENEQDSNSLTKTQRKRSLVTAEPQHVTLIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGVNIVLLEGITPNIQLEDFPTSPTSTAKQEFLTVVKCSIAKSQALYSAQRGLKTNNAAVFKVGAISINIPQHPATLHSMMVRSSHQLSKQISDLIRQPSTAPQPVKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAESSSAGTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTNSDGSSVSGDGHKLTFGQRLVNHLLGLRPPHQRYSVPAEYLCDSDMWASPQSSQSHLKACRAHSWGNEAVDYRRQGASCSQPGELRGRKIMKRIVDIRELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESVAVNDIRRDVRKKLRRSSMRAASLKDKWSLGYKPSYSRSKSISASGRPPLKRMERASSRVGETEELPEIRVDAASPGPRVTFNIQDTLKKTVWGSTPQSSCPGEGYFQFPEETELDLLSVTIEGSSHYSSNSEGSYSVFSSPKTPGGFSPGISFQPEEGRRDDSLSSTSDDSEKDEKDEDHERERFYIYRKPSHASRKKATGFAAVHQLFTEHWPTAPVNRSLSGTATERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQESPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTESPNASRGSSLPRTLSKESKLYGMKDSATSPPSPPLPCTVQSKTNTLLPPQPPPLPSAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPVERNYTTVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELETLGTTYPAETLSPGGNAPQSGSKTSASKTGIPGSSGLGSPLGRSRHSSSQSDLTSSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKTAVSGLTPGSGGLGNVDEEPTSVTGRKDSLSINLEFVKVSLSRIRRSGGASFFESQSVSKSASKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQTINLPTSGPGTPDSIEGVSQHLSPESSRKAYCRTWEQPSQSASFTHMPQSPNVFNEHVTNSTMSPGAAAQSLKSPASVRSRSVSDSSVPRRDSLSKTSTPFNKSNKAASQQGTPWETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTEARVDYMGSSILMGIFSNADLKLQDEWKVNLYNTLDSSMTDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGPVPYLPPKTVTNNLEKSSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHNTMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNTENSTTVKNSSLLSGFRGGSSYNHETETIFALPRMQLDFKSIHVQEPQEPSLQDASLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSPVIIHDENSSDKDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKLGTALQDEKEKKGKDKEEH", "length": 5091, "header": "tr|F1RQM9-1|A0A287ATK3_PIG Computationally mapped isoform of Bridge-like lipid transfer protein family member 1 OS=Sus scrofa OX=9823 GN=BLTP1 PE=4 SV=5 CANONICAL=A0A287ATK3-1" }, "locus": { "chromosome": "8", "start_pos": 101921269, "end_pos": 101737601, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009956.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009956.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009699.5", "url": "https://www.ensembl.org/id/ENSSSCP00000009699.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2603, "start_aa": "Thr", "end_pos": 2603, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2603", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3994, "start_aa": "Thr", "end_pos": 3994, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3994", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RQM9", "url": "https://www.uniprot.org/uniprotkb/F1RQM9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "presynapse", "id": "GO:0098793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098793", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATK3", "url": "https://www.uniprot.org/uniprotkb/A0A287ATK3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "synaptic vesicle endocytosis", "id": "GO:0048488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048488", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATK3", "url": "https://www.uniprot.org/uniprotkb/A0A287ATK3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1026, "end_pos": 1028, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1050, "end_pos": 1052, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1203, "end_pos": 1205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1513, "end_pos": 1515, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1678, "end_pos": 1680, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1712, "end_pos": 1714, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1721, "end_pos": 1723, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1897, "end_pos": 1899, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1921, "end_pos": 1923, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1932, "end_pos": 1934, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1933, "end_pos": 1935, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2074, "end_pos": 2076, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2115, "end_pos": 2117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2532, "end_pos": 2534, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2553, "end_pos": 2555, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2782, "end_pos": 2784, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2953, "end_pos": 2955, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3099, "end_pos": 3101, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3351, "end_pos": 3353, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3775, "end_pos": 3777, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3894, "end_pos": 3896, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3999, "end_pos": 4001, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4240, "end_pos": 4242, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4343, "end_pos": 4345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4385, "end_pos": 4387, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4416, "end_pos": 4418, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4423, "end_pos": 4425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 464, "end_pos": 466, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4777, "end_pos": 4779, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4781, "end_pos": 4783, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4787, "end_pos": 4789, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4900, "end_pos": 4902, "annotation": "n_glycosylation_sequon" }, { "start_pos": 639, "end_pos": 641, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" }, { "start_pos": 885, "end_pos": 887, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ATK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ATK3" }, { "id": "SM01220", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01220" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Bridge-like lipid transfer protein family member 1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 4384, "end_pos": 4988, "start_aa": "Phe", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 2603, 3994 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1026, "end_pos": 1028 }, { "start_pos": 1050, "end_pos": 1052 }, { "start_pos": 1203, "end_pos": 1205 }, { "start_pos": 140, "end_pos": 142 }, { "start_pos": 1513, "end_pos": 1515 }, { "start_pos": 1678, "end_pos": 1680 }, { "start_pos": 1712, "end_pos": 1714 }, { "start_pos": 1721, "end_pos": 1723 }, { "start_pos": 1897, "end_pos": 1899 }, { "start_pos": 1921, "end_pos": 1923 }, { "start_pos": 1932, "end_pos": 1934 }, { "start_pos": 1933, "end_pos": 1935 }, { "start_pos": 206, "end_pos": 208 }, { "start_pos": 2074, "end_pos": 2076 }, { "start_pos": 2115, "end_pos": 2117 }, { "start_pos": 2532, "end_pos": 2534 }, { "start_pos": 2553, "end_pos": 2555 }, { 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}, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": 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"database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157203", "url": "https://www.ncbi.nlm.nih.gov/gene/100157203", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157203", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157203", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CRIVFIE", "url": "https://omabrowser.org/oma/group/CRIVFIE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S544", "url": "https://www.orthodb.org/?gene=F1S544", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12154", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12154", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12154:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12154:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08660", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08660", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-446193", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446193", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287ARB8", "url": "https://www.uniprot.org/uniprotkb/A0A287ARB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARB8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S544", "url": "https://www.uniprot.org/uniprotkb/F1S544", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S544-1", "url": "https://www.uniprot.org/uniprotkb/F1S544-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGALILAAAGAALAVLLAVRLWVVLRPRAAVPRRSLSLLVVAGSGGHTTEILRLLETLSDAYSPRHYVIADTDEMSAHKINSFELNRADRNPSTTVLCNGPGTCVPICISALLLGILGIKKVIIVYVESICRVEHLSLSGKILFHLSDYFIVQWPALKKKYPKSVYLGRIV", "length": 172, "header": "tr|A0A287ARB8-1|A0A287ARB8_PIG Isoform 1 of UDP-N-acetylglucosamine transferase subunit ALG14 OS=Sus scrofa OX=9823 GN=ALG14 PE=3 SV=1 CANONICAL=A0A287ARB8-1" }, "isoforms": [ { "isoform_ac": "A0A287ARB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARB8/entry#A0A287ARB8-1", "sequence": { "sequence": "MGGALILAAAGAALAVLLAVRLWVVLRPRAAVPRRSLSLLVVAGSGGHTTEILRLLETLSDAYSPRHYVIADTDEMSAHKINSFELNRADRNPSTTVLCNGPGTCVPICISALLLGILGIKKVIIVYVESICRVEHLSLSGKILFHLSDYFIVQWPALKKKYPKSVYLGRIV", "length": 172, "header": "tr|A0A287ARB8-1|A0A287ARB8_PIG Isoform 1 of UDP-N-acetylglucosamine transferase subunit ALG14 OS=Sus scrofa OX=9823 GN=ALG14 PE=3 SV=1 CANONICAL=A0A287ARB8-1" }, "locus": { "chromosome": "4", "start_pos": 122450972, "end_pos": 122343455, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064305.1", "url": "https://www.ensembl.org/id/ENSSSCT00000064305.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046625.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046625.1" } ] } }, { "isoform_ac": "F1S544-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARB8/entry#F1S544-1", "sequence": { "sequence": "MGGALILAAAGAALAVLLAVRLWVVLRPRAAVPRRSLSLLVVAGSGGHTTEILRLLETLSDAYSPRHYVIADTDEMSAHKINSFELNRADRNPSTTFPEYHIHRIPRSREVQQSWPSSALSTLYSLWFSFPLTHRVKPDLVLCNGPGTCVPICISALLLGILGIKKVIIVYVESICRVEHLSLSGKILFHLSDYFIVQWPALKKKYPKSVYLGRIV", "length": 216, "header": "tr|F1S544-1|A0A287ARB8_PIG Computationally mapped isoform of UDP-N-acetylglucosamine transferase subunit ALG14 OS=Sus scrofa OX=9823 GN=ALG14 PE=3 SV=1 CANONICAL=A0A287ARB8-1" }, "locus": { "chromosome": "4", "start_pos": 122450972, "end_pos": 122343455, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092891.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092891.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076339.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076339.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S544", "url": "https://www.uniprot.org/uniprotkb/F1S544" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157203", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157203", "resource": "KEGG Pathway" }, { "id": "R-SSC-446193", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446193", "resource": "Reactome", "description": "Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein" } ], "orthologs": [ { "uniprot_canonical_ac": "Q6AY85-1", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14", "gene_name": "Alg14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVCVLTLAASAGGLAVLLIVRLWAVLRSHPVTPRQSLGLLIVAGSGGHTAEILRLVGSLSGAYSPRHYVIAESDEMSAKKIHSLELARAQNDSTTEHTEYYLHRIPRSREVRQSWLSSVFTTLYSIWFSFPLVHRIKPDLVLCNGPGTCVPICVSALLLGILGIKKVIIVYVESICRVETLSLSGKILWHLSDYFIVQWPTLKEKYPKSVYLGRIV", "length": 216 }, "evidence": [ { "id": "A0A287ARB8", "url": "https://omabrowser.org/oma/group/A0A287ARB8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96F25-1", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14", "gene_name": "ALG14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVCVLVLAAAAGAVAVFLILRIWVVLRSMDVTPRESLSILVVAGSGGHTTEILRLLGSLSNAYSPRHYVIADTDEMSANKINSFELDRADRDPSNMYTKYYIHRIPRSREVQQSWPSTVFTTLHSMWLSFPLIHRVKPDLVLCNGPGTCVPICVSALLLGILGIKKVIIVYVESICRVETLSMSGKILFHLSDYFIVQWPALKEKYPKSVYLGRIV", "length": 216 }, "evidence": [ { "id": "A0A287ARB8", "url": "https://omabrowser.org/oma/group/A0A287ARB8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D081-1", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14", "gene_name": "Alg14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSILILAATAAGLVILLFQRLWTVLGPHHVTPRESLRLLIVAGSGGHTTEILRLVGSLSNAYSPRHYVIAESDEMSAKKIHSLEELSRAQNDSTTEYPKYHLHRIPRSREVRQSWLSSVFTTFYSMWFSFPLVLRIKPDLVLCNGPGTCVPICVSALLLGILGVKKVIIVYVESICRVETLSLSGKILRHLSDYFIVQWPTLKEKYPKSVYLGRIV", "length": 217 }, "evidence": [ { "id": "A0A287ARB8", "url": "https://omabrowser.org/oma/group/A0A287ARB8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VXU7-1", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14", "gene_name": "Alg14", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": 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} ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARB8", "url": "https://www.uniprot.org/uniprotkb/A0A287ARB8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "dolichol-linked oligosaccharide biosynthetic process", "id": "GO:0006488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006488", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARB8", "url": "https://www.uniprot.org/uniprotkb/A0A287ARB8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transferase activity", "id": "GO:0016740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016740", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARB8", "url": "https://www.uniprot.org/uniprotkb/A0A287ARB8" } ], "pmid": "" }, { "name": "protein-membrane adaptor activity", "id": "GO:0043495", "url": 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"Triantennary" }, { "glytoucan_ac": "G00318AV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00320ZP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00328CG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00330GX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00335DM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G00340NM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00348IY", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G00349CA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00357HK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00361LC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00361YF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00368HM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00369RM", "type": "N-linked", "subtype": 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"N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00471UP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00480IB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00480KJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00480NH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00484DO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00487XO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00491BE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00492CQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00500HT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00503EE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00504PK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00504PZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00511BF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00514XC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00519UD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00530IV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00531ZU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00534LI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00536FZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00544JF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00545NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00545SU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00551JZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00553AN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00565QJ", "type": "N-linked", "subtype": "Bisected" }, { 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"N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00644ZZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00645SW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00646SN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00647HI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00650AC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00662IB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00662UH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00666EC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00669WU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00670OT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00677JU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00691NS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00695JO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00706AL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00706QN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00706VT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00706YM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00709CF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00727QV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00738BQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00740UU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00743WU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00745XU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00747UC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00748RT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00767OE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00780PN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00797ZX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00798PL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G00800WJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00805TZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00810PC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00814BW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00817BI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00822CX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00826SV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00828CZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": 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"G00888JR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00893FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00899LR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00900AZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00908JO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00909GK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00909PI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00910RZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00910WD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00915XC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00923KH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00943OF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00948WV", "type": "N-linked", 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"type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01023RC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01028CW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01031EZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01034MJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01044XE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01050GH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01051RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01063DC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01069AK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01079KY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01079TS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01092NQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01093GI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01096QY", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01100DE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01107YB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01120GS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01123UL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01125EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01158PQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01163CA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01169EW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01169IB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01178HS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01180ZJ", "type": "N-linked", "subtype": "Tetraantennary" }, { 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"subtype": "Complex" }, { "glytoucan_ac": "G01385UC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01386NB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01394CG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01398HF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01406RR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01414CL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01416SG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01422KB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01424EN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01432LC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01450UB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01450VD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01454UB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01465MJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01472KD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01473PI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01473WV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01476WA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01489UZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01510MQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01512NR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01521YU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01522FD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01543ZX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01553JA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01571OF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01578LK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01587DQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01590HD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01597IE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01600VV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01609YG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01613KN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01621RQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01631SU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01654FP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01657DW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01659NO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01659RK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01668VR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01669LU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01670UQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01674EC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01680CB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01681JC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01682GA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01685IB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01701XV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01726PL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01727MH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01727PW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01730TA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01733NS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01734XU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01750CE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01769FS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01772UL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01789AQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01791PK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01803DO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01817YC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01818NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01818TY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01827FA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01828CI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01837GZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01851EU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01855OX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01856RL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01862YG", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G01863JX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01868JD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01880LA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01891JS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01912KI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01912QV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01914HM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01914VS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01917CF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01919UV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01923XE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01935FK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01946CN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01954BU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01954TO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01954ZH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01959AV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01962HY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01962RN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01978EJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01989KK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01996OW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01999JH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G02000AU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02018EI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02021XC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G02025MF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02038EU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02041MX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02050BR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G02057LB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02063GL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G02076VP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02081QK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G02106OV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02117MY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02122FK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02132BT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02133IK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G02151HS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02152MS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02156UW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02162DJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02162HB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G02170ZK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02174FQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02175JO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G02175PZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02183OE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02188RD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02193CV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02198VW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02201UU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02207TG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02215UL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02229WQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G02230FN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02231KH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02238VC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G02251YG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02263UX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02270XQ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G02274DJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02280UH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02282YO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02284OJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02284UY", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G02290KA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02296PF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02302MM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02310VX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02311IE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02322JK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02324LI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02335DL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02335QF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02367KE", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G02397SF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02402FF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G02407HJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G02410EE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G02422RD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02427KF", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G02429WR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02432OC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G02441OB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02442YU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G02443MB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02456AL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02469EJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02470AU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02470WS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02471GW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02473HY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02474FD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02483WT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02494HC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02502PF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02513HF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G02521EG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02522GH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02526NN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G02527CE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02535CQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02536WY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02561FC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G02571ID", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02582JY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G02591CC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G02611WU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02624IW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02629TA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02630BJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02631NI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02646YL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02654EL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02660HR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02660WC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G02661MY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02670IJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G02679YX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02681BC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02684XX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02686MD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02718AK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02745NU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02760XH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02762FB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02776IS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02786XX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02791JM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G02797YE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02812LT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02824PK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02830SF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G02835AW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G02841EM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02846NF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02872OI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02891DO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02900JI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02915XR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02923VP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": 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"subtype": "Tetraantennary" }, { "glytoucan_ac": "G13511ZU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13515ZY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13517FA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13521NM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13527SO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13528WO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13535FD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13537KO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13541NC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13542HW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13545DP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13577LP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13580OP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13583BZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13585JF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13591VJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13592PV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13592VY", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G13594XM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13614FV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13626CZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13628SS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13631VW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13634RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13646GG", "type": "N-linked", "subtype": "Tetraantennary" }, { 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"type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G14037WI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G14041AZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G14047MI", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G14047PA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G14050KB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G14054GG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14057WB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14066AX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G14068WV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G14070IQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14077SN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14079OA", "type": "N-linked", "subtype": "Complex" }, { 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"G14462MX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G14478ZZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G14488UY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14491HM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14510SZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G14512NS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G14520ZO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14522GP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14548ZL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G14549GA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G14567OB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14570XG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G14572GC", "type": "N-linked", "subtype": "Core-fucosylated" 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{ "glytoucan_ac": "G18738RV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18745JI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18756YE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18763UX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18764US", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18768EK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18775SC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G18784ZP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18790BM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G18803CK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18803PL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G18806VU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G18808AB", "type": "N-linked", 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"subtype": "Triantennary" }, { "glytoucan_ac": "G18948TG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G18956GV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18958EQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G18960KY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G18969PK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G18970OV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G18972WN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G18999DB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19019TY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19023UQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19026NP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19030IX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19042WB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19043KC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19051CX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19053XS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19072SW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19075PM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19083SI", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G19090MX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19099PA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19104OH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19106CR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G19111QU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19120ZM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19124IK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19124KK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19125UE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G19126UP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G19134QI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19140RD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19146BQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19155BS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19164PL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19173US", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G19177YL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19197RD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19206WR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19208WA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19209QL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19221SF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19226BI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G19242QH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G19243JM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19243TV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19252ZI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19267AT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19271GD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19273EM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19281RB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19286EZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19287UY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19289JN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19292KY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19293KL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G19294RF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19304XI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19310VN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19315TM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19317GV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19335OM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19353CF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19353SW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19354PF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19370RO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19376VI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19378QH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19378ZS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19384OK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19397EJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19421FY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19429IT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19430NR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19430QH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19444JC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19444YR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19447ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19455CM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19456TQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G19463UP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19469VZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19471FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19483RZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19490DN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19511ID", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19517HH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G19520XO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19526IZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19532EC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19537TS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19537YP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19541IU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19549OP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19553VJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19559QA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19561MR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19565UD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19568JE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19572NG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19588HA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19588WO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19592AH", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G19600YQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G19607EP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19610CW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G19615BB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19616IY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19626TP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19636RY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19648XQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19659TZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G19668AC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19668FQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19677BZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19677EK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19679RY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19687OL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19689QF", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G19697JA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19697PM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19710JA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19726AG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19740UO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G19747OA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G19759SI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19763QB", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G19778AE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19782JM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G19784PB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19790PJ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G19805MD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19826RH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G19839OY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19840AF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19841IT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G19843TY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19854OC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19854OL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19854PG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19854WU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19863KG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19866OD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19868AX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19869FI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19885CO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19886LH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G19894RH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19898UW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G19906BM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19911YR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19914RN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19934BY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19938TJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19940DW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19941RO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19943KG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19949UL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G19958IL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G19961VO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19962XN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19962YD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19965IC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19971JJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20018DL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20021PB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G20030CU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20034RK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G20054JA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20057BO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20064NM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20069CG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20071ET", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20076CD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20078BU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G20079RG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20088JQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20096RP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20097SJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20098FE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G20113TH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20132UG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20140JS", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G20147UM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20160SB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20163DJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20167OW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20168MP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20170YB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20172ET", "type": "N-linked", 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"G20466RY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20494RJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20508DJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20510AM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20510FY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20522WI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20532UQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20538OA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20542OL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20544CY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20546OR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20547AH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G20551LK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20552DX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20564XL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20565EE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G20576NE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20621ZX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G20624LQ", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G20624LR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20629JD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20636FS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20640TY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20643DZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G20650NV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20652MD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20662UG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20663AI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20692KB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20692QU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20694YW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20697MN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20711NK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20720CG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20724DU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20737NH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20744OH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20751GZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20758LC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20767LB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20768QM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20779SK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20794PH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G20815TK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20830HU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20841PR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20847FN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G20871ZT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20873FQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20877ZV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20881QF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G20883FD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20883QG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20885BK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20894MY", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G20895FL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20909AP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20912QY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G20919FV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20924UR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20925KM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20926BB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20946SK", "type": "N-linked", "subtype": "Tetraantennary" }, { 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"Core-fucosylated" }, { "glytoucan_ac": "G21432UE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21437MZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21438LK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21445UU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21451CA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21454AE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21456NQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21457YV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21459ST", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21470TX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21473QQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21495CG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21498SM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21508HF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21513QX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21514JX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21519PO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21549HJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21550DG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21586RO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21609FV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21627CA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21642VS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21663DV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21667GZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21676JO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21678VW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21679ID", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21695CC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21727SR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21729HC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21730NZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21731DB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21733CM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21733DU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21733SO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21737WY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21746MX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21751SS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21754WR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21755KD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21756MV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21760UP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21767ND", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21786MN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G21788RU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21793RV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21823MR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21825UH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G21828OD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21838QU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21847RB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21850BQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21858EN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21867ZO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21881PU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21897ZX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21898KP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21901DC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21901SY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21902RN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21916IS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21925JZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21927IY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21928XN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21929YV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21933CU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21933XG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21934ZS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21946EN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21956VB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21967UB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21969LH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21969UD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21969ZB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21974TQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G21982KM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G21986MJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22000SZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22009DO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22011DS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22014NH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22015SR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22018CH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22018VM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22021IQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22022NY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22032KD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G22043HZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22043KP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22048BB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22078MT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22083UZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22088WH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22098NU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22104XU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22107KA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22117HL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22117NA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22118PM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22120QI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22122FL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G22123FD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22137KZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22137OG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22140GZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22146HW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22146SF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22152RD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22159OA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22161YQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22163FP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22170TU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22188XM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22204JI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22208HN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22211WF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22222NZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22230QR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22230UR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22237ZE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22246QW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22252FR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22252XB", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G22260JR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22264FR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22265BO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22267WV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22283TV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22289RW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G22305FL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22306HH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22313SX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22330AF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22340YC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22351RY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22354SF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22361XJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22367YH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22375QZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22387ST", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G22388FD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22406UE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22426TD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22427ZK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22430RE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22432GF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22437MC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22442GQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22444UV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22447QF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22457TG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22467XI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22469AE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22477EB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22480CI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22483YL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22486LT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22487SD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22487WN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22491NS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22493AJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22508JZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22511DQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22511JU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22511QL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22519VR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22533WA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22538PK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22550VJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22558JP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22562AT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22562DG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22576RV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22587DK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22599MH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22607MW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22638DS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22644UB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22650VK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22658BN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22674CI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22678XU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22686TA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22687XW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22699CC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22714CW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22721QX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22728HO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22731HP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22732WO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22735CK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22747ZM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22754FQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22766AZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22768VO", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G22787UZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22793CW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22795QB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22814HE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22826KU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22836DF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22855EV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22859OA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22864HF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22864KB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22865RK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22868PF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22887CB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22887EQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22889SE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22893QE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22898PA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22906YL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22912TT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22914HB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G22918BO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22920IO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22925JC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22927MQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22928ZH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22938IP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22945AJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22946YB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22949KX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22972ZW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22979QH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22981GY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23002WE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23008ZY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23013VP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23022KK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23023HU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23024PQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23025EY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G23026QZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23036BB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23060KN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23072OZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23087XI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23099XP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23109YO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G23113NH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23117SI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23132GK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23134DZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23134YS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G23134ZR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23142ED", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23142YD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23151BQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23151RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23152VH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23155RN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G23162TR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23166NU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23175TS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G23176IZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23182LG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23210FC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23212LP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23212XQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23228DD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23237YU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23239HX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G23259KO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23280RB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23288OZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23290TL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23295TF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23296IL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23305TF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23307DT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23315EF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23322BE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23330SI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23340ZN", "type": "N-linked", "subtype": "Complex" }, { 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"N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23416VJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23419AQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23436FC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23437PF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23451HI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23456BB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23458QH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23484GM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23488DX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23495QB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23503KU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23504NK", "type": "N-linked", "subtype": "Complex" }, { 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"Tetraantennary" }, { "glytoucan_ac": "G24176CX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24191XX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24195NC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24202BK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24203FO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24203XI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24226KZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24229GD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24241WW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24251YG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24275AM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24284HU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24284KU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24292VT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24297EH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24303GI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24304KO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24305IZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24318KV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24324UG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24325KO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24327OK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24329OK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24336IA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24338MH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24345FL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24346JZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24350QN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24354CO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24355OK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24356AE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24362DZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24364HL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24366XJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24371AE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24371XA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24374BW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24374US", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24379VQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24382RE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24402OX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24402VA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24413UY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24414QM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24416SU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24420RT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24422GQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24432GW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24439WH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24440EI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24445DN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24465EF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24493OT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24495VV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24498DI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24501HF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24517QL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24523DO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24523FD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24527YF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24528UH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24529GI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24531RS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24541XL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24546DC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24552KE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24561WN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24573UJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24585EP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24585JV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24593DX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24596WC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24599MW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24604HV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24616QB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24620AI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24622ZA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24634RZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24635ZS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24637XH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24655MP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24657IT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24660HK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24668UI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24672GO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24673VL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24674CB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24675BT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24687JM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24694RX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24696ZK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24700EX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24701AI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24705DL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24720WH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24739VM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24744SN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24748QU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24752UA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24754HF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24758NZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24763HX", "type": "N-linked", "subtype": "Core-fucosylated" }, { 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"N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24844YX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24849NM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24857RT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24867FR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24870CO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24872OE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24875YE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24888ZY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24891EL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24897QX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24913UR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24914SY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24915WN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24920KE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24921TW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24926AJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24930XV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24936MG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24948VM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24954RW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24968XB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24970UY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24977IR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24984RR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24987DS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24990UB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24994OK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25019NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25023DC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25027GY", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G25058ZU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25062CC", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G25067BP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25067TK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25068HM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25069TE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25094QT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25095HH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25096GQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25097RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25104PV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25129DQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25132GJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25139BM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25140TA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25162JS", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G25164FO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G25164XM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25168RI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25173WC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25180HQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25200CR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25224QY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25228LR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25232SJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25250JQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25251YZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25264CN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25279YI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25280VW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G25290DT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25297CU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25310TE", "type": 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"type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25394BK", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G25403ZF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25406HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25407RZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25409XH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G25423CA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25426CZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25426UG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25429RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25432CN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25443CX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25457IZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25460BQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25461TF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25463XU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25471TG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25471TR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25473LQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25481DT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25495RY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25495SR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25497SH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25505UF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25520XG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25530RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25534RX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25574DU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25579XD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25592WY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25596GA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25601BM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25605GB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25612NR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G25614IV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25632TA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25640AW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25650KG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25657HD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25660ZB", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G25662FF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25674QD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25682YL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25701YZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25703UN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25708TD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25710JB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25713LT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25713RA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25728OC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G25731WL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25731ZE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25741AM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25744PP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25750QI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25757VW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25764FB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25781GZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25787HL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25793XL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G25804NU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25821ZR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25822UT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25827FI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25830EV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25835MT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25837HW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25849PL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25853OY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25864LQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25869LV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25880OF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25886YT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25890BU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25895IY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G25902AL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25902LH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25902PW", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G25917KV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25926OL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25939RB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25942LR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G25961NT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25965IE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25967ER", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25984CA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25986DW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26014HJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26014MK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26016BX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26018HD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26027SF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26030HK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G26030JN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26034OB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26053FF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26062ZJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26063ZO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G26065RX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26068PU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26069FK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G26070CR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26072HQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26080SE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26081RR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G26106YB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G26109NE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26121NN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26122PR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26123CC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26133ZJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26134IV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26137IM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26142HL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26143BN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G26144DH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26145BA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G26145IL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26150FI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26153IK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26160AS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26164VG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26169CH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26179TW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26182BM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26187KC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26189BB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26206DX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26214OI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26215AL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26229WS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26239IW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26246KG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G26264HC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G26264SQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26265RM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26267FS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26274XD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G26275JI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": 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"N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26557AV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26566WH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G26578KR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26580QL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26600MH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G26600PV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26603WG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26610JD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26612OY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26612PR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26624YG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G26629TM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26640MK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26644DW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26646BT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26664GH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26679NL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26681GV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G26684GN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G26689BJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26703BH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26708HD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26709HU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26711OZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26713RV", "type": "N-linked", "subtype": 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"G26795PW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26796CV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26796WO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26798CI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26802BO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26814OZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26822XQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26877LE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26877ST", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26881SV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26884UV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26891DY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26891RG", "type": "N-linked", "subtype": 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mannose" }, { "glytoucan_ac": "G30771XN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G30774FE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G30786GZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G30792JM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G30797DS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30804AW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30804NF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G30817GB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30821DO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30837TR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30838QM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G30844CL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G30857WQ", "type": 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"G30925FN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G30928KF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30939HN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30966AS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30968MT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30969JI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G30973LD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30980DP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30996QM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31010RQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31013GB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31018GZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31019WF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31020MO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31021LA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31026DI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31031DV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31032XG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31033KO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G31037AT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31037WG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31040SL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31051WW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31097EL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31105PF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31105VN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31106FU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31110RD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31112DL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31118FR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31124JV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31145ZM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31146PE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31146VU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31153XO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31156QG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31186LT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31187IJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31188NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31196DF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31198XA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31207MF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31213GU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31219GT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31220IW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31223MN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31231LV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31235IJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G31246GN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31249TS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31252KI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31254TP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31265WB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G31276WM", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G31276XF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31294RU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31297VK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G31298UL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31316SG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31323JQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31329VE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31333ML", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31337GK", "type": "N-linked", "subtype": "Other" }, { 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"type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31520YP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31531YC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31532GK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31540AF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31555KY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31555TF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31559RO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31561GU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31565BP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G31576LD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31577VK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31579YP", "type": "N-linked", "subtype": "Core-fucosylated" 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"type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31638QT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31639EU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31639NG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31652KL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31661TZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31662BR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31668AP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31670BC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31674DQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31679YU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31680LJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31685QV", "type": "N-linked", "subtype": 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"type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31838XA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31847TK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31851ZE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31859DB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31865AG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G31873MP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31878HV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31894KJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31898CI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31904ND", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31906VF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31922FD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31943KG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31972CO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31976RQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31979RM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31984FM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31991IV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31993QW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G32065BG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32065KX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32079YD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32080QS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32081QI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32082KI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G32088SL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32104JU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G32107HF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32111TP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32114CQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32116UD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32144XK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32146GG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32146HD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32149KV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G32156DB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32156ZV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32169DS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32173NW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32178ZI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32179HL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32190EA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G32201IL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32205BY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32205YW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32211XJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32212NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32216CL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32216KM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32216QH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": 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"Triantennary" }, { "glytoucan_ac": "G32303MT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32305RZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32318NT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32324QA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32332OM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32340YV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32342EK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32358YV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32364DF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32364PV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32365IM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G32371XG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32375YW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G32377GZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32378BV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32386AG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32387AH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32395UL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32418LI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32429AH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32429DG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32442UP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32447FC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G32452EX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32455PS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32461GF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32473MI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G32483HZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32484KU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G32485PU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32489DL", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G32490LW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32505QR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32510IZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32514NN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32518YQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32522KP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32525MO", "type": "N-linked", "subtype": 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"type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G33451SJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G33451YI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G33452ME", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G33460HH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G33474HO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G33487SK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G33490PH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G33502UB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G33522ME", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G33528AU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G33530VI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G33559CP", "type": "N-linked", "subtype": 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mannose" }, { "glytoucan_ac": "G34059TG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34079YB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34080GN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34082PC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34126VO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34129PR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34135IW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34135VC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34143KE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34158QP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34175ZP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34197QS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": 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"Tetraantennary" }, { "glytoucan_ac": "G34905OT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34914SZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G34931KK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34944JL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34946TH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34947FX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34952XZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34959DS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34962ER", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34972BB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34982PS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34983YN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": 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"Complex" }, { "glytoucan_ac": "G35069CO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35087KV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35096EN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35105ZB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35109CW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35111DP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35120AS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35139NO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35150SV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35174SC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35175QJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G35194OT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35203GL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35206AM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35210SH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35211AB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35226HQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35226KE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35231LE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35242IF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35245OK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35247EJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35247XK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35257SQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35257UG", "type": "N-linked", "subtype": "Core-fucosylated" }, { 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"subtype": "Hybrid" }, { "glytoucan_ac": "G35380EO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G35382VN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35383IJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G35397UL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35398OT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35402TO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35404DY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35429JB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35438GZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35439XB", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G35442CG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35452CG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35452GG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35455OM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35455VF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35459KZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35464DX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35472TK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35479XP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35482LB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35482NV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35484EX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35491XU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35502ZW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35508EI", "type": "N-linked", "subtype": "Core-fucosylated" }, { 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"N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35674SO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35675LO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35679TE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35687VS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35692YN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35698AZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35698OP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35708JV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35710KY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35716TV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35722YG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35724PH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35732LD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G35734AU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35734MQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35740ZG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35747ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35748HH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35754WD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35755FR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35769UV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35774GX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G35777BH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G35777GW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35787ED", "type": 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"subtype": "Triantennary" }, { "glytoucan_ac": "G36134VO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36136WS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36138QU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36149QU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36152VT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36155VO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36157OV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G36159AI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G36167NI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36171DC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36171JA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36176RV", "type": "N-linked", "subtype": "Core-fucosylated" }, { 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"Triantennary" }, { "glytoucan_ac": "G37340DV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37344VM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37348LW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37359EL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37363NU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37364JG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37369XO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37372KB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37383BH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37385TT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37393WN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G37399MO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37420XW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37427PW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37440UJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37442IW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37465NJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37467TQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37476QB", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G37485VW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37487GB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37488LQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37491LV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37492BZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37494DP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G37504WN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37552GO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37562WX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37565XR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37568BQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37581LU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37588ZB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37591JC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G37597FW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37601IJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G37601UJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37605QB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G37612TM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G37626KE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37626XQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37626ZT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37636YK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G37642WS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37648ZH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G37651YK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37655HY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G37660EA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37662JG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G37664BH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37669IH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37673LG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37676KD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37682CJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37689LY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37696FJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37703SF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G37718JO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37745NY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37746FK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37772CO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37780QM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37783EW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37809PL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37812PU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37817YS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37825LG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37827FY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G37841NF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37841WI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37845OW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37855JI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G37863SX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37868JH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37868ZX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G37884CG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37885IZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37903FG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37919IW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37919OJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37938RD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37944VQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37956IN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37969WK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37980XT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37986HU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37990ZT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37997JT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G37999UP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38001FQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38002QN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38002XF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38019PR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38022PE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38029ML", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38032QG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38047QV", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G38050BW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38057EZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38072IQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38085YD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38109CU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38112KT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38113WG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38115KZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38117WE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38121JC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38121TQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38135PX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38137TC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38141KL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38155ZN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38208CY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38217AM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38217CX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38230YO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38235ZC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38236XZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38241TC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38249IZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38252LS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38266ZQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38267IW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38271CW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38277AO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38278VW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38291RB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38296AM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38297TU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38322BG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38322EG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38329HC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38349VC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38362AS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G38371WW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38373BD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38395YJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38404PP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38406HA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38407OC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38407UP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38420NQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38445HB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38453JX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38470IM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G38473PC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38482AF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38482UV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38488ZJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G38490TT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38497GA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38498HY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38515AK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38540KX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38540OQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38549YL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38567BT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38570MU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38579XX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38586WN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38611TY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38613YU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38618HZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38625SV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38637SA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38638WU", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G38643HC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38655UZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38658JL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38659HF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38663XJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38664NX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38667YB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38667ZB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38668OJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38674DP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38681ZT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38682DV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38702RY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38714CC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38728JS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38738YC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38746TV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G38748VM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38749GN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38753OV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38756OC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38759NN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38773BX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38788GC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38800CP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38810ZD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38817ZQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38824JE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38835AV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38843SX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38849GM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38867AF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38883QO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38883ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38887NC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38895FE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38901GU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38901WO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38901YC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G38908KI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38909RH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38919CO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38919QI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G38922KN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38930WU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38936AZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38946SH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38948TJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38951VC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38955TH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38956YE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38958GL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38960EZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38966ID", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38973QQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38977DN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38978PR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38979QD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38985IW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38997JB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39018CC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39020WZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39027MU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39029JR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39032NB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39035OI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39046AL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G39052XF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39056PQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39062FQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39062YR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39065HZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39075QA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39082VT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39089YD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39111QK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39116LG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39119ZF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39125OY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39132UF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39136RY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39149XJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39153BM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39161HZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39167RG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39170SV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39171RD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39174FS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39181YB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39183DW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39186HR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39213VZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39218IL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39229GR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39232QP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39253LL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39292VX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39296OW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39298CN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39298RF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39299DH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39302PS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39308XN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39318DL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39318IJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39323NG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39338NX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G39340CD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39342SG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39344CL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39355VF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39361OH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39370XG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39374GZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39375NU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39377DE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39377JQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39379ZG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39383KR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39397SW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39401OQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39407WQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39408YK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39414NM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39419SX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39421JD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39431MA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39437XQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39439UR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39444QC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39452ZZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39461VJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39465KG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39472EX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39473HX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39478RR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39482HK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39482QN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39487ZR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39492DS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39504IG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39509DP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39515DI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39531LA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39534CW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39538CP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39540XG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39541IV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39546BN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39549VW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39556AM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39556JJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39557EZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39565DV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39566TW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39567LQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39567MF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39570CO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39578OU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39591HW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39595CR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39597XQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39600NF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39601JQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39602UU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G39617JJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39620BN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39623FZ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G39631PS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39633IV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39645AX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39661KT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39662GV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39687OP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39687WG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G39691JY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39697OF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39716GO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39722LF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39735TI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39750GC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39756ZC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39757QQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39758CF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39758MG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39760IQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39761CO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39761RS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39764AC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39765RY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39778RQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39783GG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39794DN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39797QC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39799BM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39800KX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39809FW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39809LE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39810GC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39812HV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39813YP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39824OQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39829HV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G39841VH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39846LH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39856ST", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39868EL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39873VR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39879TX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39887ME", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39893KL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39906AT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39908TT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39917RN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39943KJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39944FZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39945EK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39952PY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39957VJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39970RY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39976KS", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G39977UQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39984XX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39992DR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39993XV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40000FH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40012WS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40013GE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40024EE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40027VO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40033BQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40033UH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40044DP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40044ME", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G40045PY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40064GR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40065EM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40069AV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40074SP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40079RD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40086WC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40095NL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40096SL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40097PQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40111WL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40124HY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40125HA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40127OK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40128VT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40136EV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40138ED", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40173NY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40173RG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40173TB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40181EN", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G40182HE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40183VY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40189YT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40194MN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40198OD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40200RC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40212MM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40219EV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40221OX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40236GK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40239DI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40244KN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40245CP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40252XD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40264HA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40264QS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40268BC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40271HI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40289AW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40289RO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40298CT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40309II", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40317YZ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G40330AQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40341NV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40343KH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40346WK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40352EF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40353FS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40358EZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40360LO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40365PX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40368GK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40373LS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40384AJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40394IQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40396FX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40411HQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40428GO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40429SD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40442UK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40447LJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40452FK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40452ID", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40461OS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40463TJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40467RH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40472QE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40475CA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40480ZI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40482NA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40490KT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40495ZI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40504AF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40513EI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40514ET", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40533LI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40537VT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40540DD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40542QP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40554DX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40558VT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40564KP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40566IJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40569DS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40573OX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40576JC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40578SN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40579HH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40579SX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40608DF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40641DI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40642FF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40647HS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40650WW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40658KJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40662VP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40668YU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40670DJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40690AW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40702WU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40704WK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40707SF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40728DA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40732RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40734VV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40735XY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40740PL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40744ZM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40783XQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40785MA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40786FB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40791GU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40796DS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40806JH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40806RJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40813TL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40820FX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40821RK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40825YQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40840UK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40849ON", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40865GN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40871MS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40896GF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40900UQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40903ZD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40905WD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40906DZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40909AN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40910SH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40915GX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40922OB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40926RU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40944WZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40963VD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40966IE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40967JZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40969DD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40970QY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40986VK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40991AO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40994FC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40998BL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40998MZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41002DX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41007JQ", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G41012KL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41014HY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41015SM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41030WJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41036NU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41045PG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41046RP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41063JS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41068PD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41072QC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41075QA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41081WD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41085KZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41087ZA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41088MH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41092IE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41095QB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41107EH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41112KF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41116IJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41120BJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41125AS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41129KJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41149OA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41163WS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41171HL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41178NB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41182NJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41191PN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41209QO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41219SY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41223DK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41224TP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41243JF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41274AJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41276XE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41278YY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41291OR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41304FS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41304KE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41309OX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41310VR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41315PN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41323XJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41326IG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41331JX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41343RT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41347IL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41348RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41352UL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41352ZD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41359DB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41366ZD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41387DW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41389FB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41389HP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41400BX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41403MI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41405AU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41405QQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41408ND", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41421SQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41437NK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41445YZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41449ZD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41455NO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41458MM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41458VW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41477DH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41485IM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41485LK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41489AY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41504VL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41510DX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41511CE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41522EV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41523QO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41525YO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41528SO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41535JH", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G41536ZF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41540QC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41543HE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41543KR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41543ZO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41555NS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41563EN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41566AJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41575GI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41576FY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41596PV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41605VJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41611UG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41611UP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41655EF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41656NL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41658RK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41659QU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41670EF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41686EZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41690KS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41706FJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41708PN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41711ZZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41715PL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41720HN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41726FA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41731DX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41742IZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41754BT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41755EF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41771ES", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41774ZC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41785JN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41787AW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41797KK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41797PU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41800OU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41811PH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41811VQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41817BL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41820ZZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41821MR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41823PK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41823TY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41824PC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41839SS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41839YT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41847IM", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G41850AE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41850LO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41850YN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41854MC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41857GD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41859XD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41864LQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41865ZJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41878UL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41879EJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41912CL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41915GN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41923EO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41929NX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41934AP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41937ED", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41940MB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41940YX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41943OZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41953RN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41957CI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41963XP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41974MG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41981MA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41989TH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41998UT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42011CP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42011NE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42013HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42020RU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42022OY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42023VI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42024LG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42026VC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42028DN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42028VS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42032ZI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42039DE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42042EG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42044GU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42058RF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42060JY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42061BV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42077MY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42081JA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42082FE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42095CU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42096BU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42097JO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42100WR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42110JE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42118KX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42123IU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42133QN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42133YG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42139GR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42155ZX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42173FT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42190AJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42193NQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42200QF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42205PU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42212IP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42222AJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42228JY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42240DE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42262TV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42264OV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42270OU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42292MP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42295MA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42299NR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42305NI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42306MH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42316LP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42324WH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42332HD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42332YT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42358JQ", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G42358LZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42362AN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42365AT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42365XA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42372YG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42380GI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42394CB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42397NB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42398FX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42400JK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42402VC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42413IW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42415XD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42420AV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42420NN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42438ZG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42439GB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42440OJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42441DJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42460RM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42461JY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42475PM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42477ZH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42482KG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42493LZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42495TI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42501PR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42501VF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42504VW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42512YG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42516QP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42525DE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42526XU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42528HF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42530JA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42548XF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42552PM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42553UZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42556HG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42565GH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42600SB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42605KJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42612YU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42614NV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42619IV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42629JY", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G42635DR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42640LE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42648OU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42653GO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42671TR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42672MA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42673EN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42674AX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42674LI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42674MT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42679AH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42680EX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42681RK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42686NP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42686NQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42702VU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42712XS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42713FO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42713IF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42713ZO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42714PB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42718VL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42720OC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42725VI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42731RJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42735RP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42746CP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42760UJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42769EU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42772CJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42779AL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42779TD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42793SW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42797TX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42801YB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42823LH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42823ZD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42824AQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42825JV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42826YI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42830YF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42832NT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42841BX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42846BO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42855XG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42862VU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42866WF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42874VX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42906YD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42909GK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42924MA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42929LX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42941KJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42962KI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42970AZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42975HG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42984GS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42984ZU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42989XH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42996MA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42998PC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43000DM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43014FZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G43026UT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43040IL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43048HN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43057CV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43066JS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43070PV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43073RP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43075NB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43075VF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43088GK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43088UA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43091XE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43095XB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43122BL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43131ZX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43136RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43137UY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43139BN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43150ZU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43157GC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43157UW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43159MH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43164CL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43171MX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43173AY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43216EX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43217GA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43230HK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43230KT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43242DB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43255OW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43263OG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43265RC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43270HW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43279WN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43280XO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43290KL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43290WV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43299SD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43301PF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43301TW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43320NB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43325ZI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43327EY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43330ED", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43330ZT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43339ZY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43343WJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43346IY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43346PX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43346UV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43350KZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43351VW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43366RC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43367QW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43374FV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43402RG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43419SH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43428WA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43433FA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43447HY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43452LH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43454VB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43460JV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43473VD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43475FH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43499QE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43502GT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43505GC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43507KQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43519BI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43521PH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43523KB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43526DL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43526DV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G43538QE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43547MI", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G43549OX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43553YK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43556OK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43558RC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43560SB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43563XU", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G43591CU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43596KL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43602WF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43603TQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43610AB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43616YA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43636RG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43638GS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43645EE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43645SI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43648DB", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G43649OO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43654PQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43657WC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43660IT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43664YB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G43665PB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43677TG", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G43680SH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43685DC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43694RQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43702IX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43708QI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43722HJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43749GH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43753QH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43755KQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43761IQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43761WH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43764PI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43765GZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43767FS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43787NV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43790PG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43797QQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43814TV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43821JZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43823BT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43832DJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43835NS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43838OY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43839NY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43848AQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43852AZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43861TS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43869EE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43873AE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43873BV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43873MM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43876NZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43885HK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43899VP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43901MM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43923FO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43927CA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43939PS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43947VZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43953LS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43963UH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43970XC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43981RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43984TE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43985JK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43989OI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43990ZC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43991QD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43997BS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44005DK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44021SN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44027TT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44030BX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G44031UD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44043ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44046WQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G44054LD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44066XU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44067HP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44070VR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G44073EJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G44076LB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44084PP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G44085QQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44089VB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44092XR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44121LY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44122BZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44132BD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G44137YR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44151FI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G44152CO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G44156OE", "type": "N-linked", "subtype": 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"G46720ZO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G46723DZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G46746GZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G46746UE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G46747LH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G46750WJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G46754UW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G46759WS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G46763GM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G46764AW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G46764NJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G46767VX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G46768QH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G46769UK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G46799HH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G46799MV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G46803GX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G46817RD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G46823DK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G46823OG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G46825BU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G46836GH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G46842LV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G46849ZO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G46851JU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G46854VN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G46878CU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G46888OH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G46894DI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G46919IS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G46922IB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G46923KZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G46936YB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G46945LQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G46946SC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G46961WO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G46974YF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G46991EQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G46992PB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G46998LN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47000SB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47006SF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G47007PV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47010DH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G47011KD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47017FT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47018CY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47023TK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47027YN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47031UJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47037BZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47039OP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47043LK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47058MH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47063XU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47065QM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47085IG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47086RP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47108UC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47122WR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47132PM", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G47155QQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47157SQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47164CZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47169TB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47171PS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47171PW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47175EF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47178AC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47179RN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G47186PA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47195EY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47199SM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G47206MY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47206OM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G47206TB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G47216WH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47220NG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47226ZN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G47238FR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47242QB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47251EO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47252EW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47253EY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47253OG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47253VG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47257MC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47260LO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47273WV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47274MT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47279LF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47280HM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47280ZG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47286YR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47294AR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47296XJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47299BP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47302FP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47316OQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G47325YJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47351YJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47352UW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G47361CF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47365JL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47379VH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47384NK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47407FC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G47412WW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47416GK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G47417PO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47421EN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47427YD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47429IK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G47440YH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G47456CG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47465NN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G47469ZE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47471ED", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47497WE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G47498FQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G47501RA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47510VM", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G47519VR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47525EV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47527ML", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47530IR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47531XE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47533LE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47554EG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47562LV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47566FL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47594NS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G47596RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47604QX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47606XQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47613FH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G47623JF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47635WM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47638IU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G47651FM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47669IJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47675LW", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G47679MT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47684RW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47699LZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47706TA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G47734FE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47736AN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47741BL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47751KU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47752HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47760AX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47760VS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47763TG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47766VH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47780WU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47782UT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47788QH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47795WI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47797ZT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47809KW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G47816DI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47822QX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47823SP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47828IM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47832TO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47835DG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47837MS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47839DU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47843KQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47845XM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47859DD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47866EC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47870LR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47871MN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47877IZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G47892HA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47894KT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47901MV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47909JD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G47909VC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47910EX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G47913QC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47914FM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47925EV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47927EW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47934SA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47934UH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47936PQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47943AE", "type": "N-linked", "subtype": 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"subtype": "Tetraantennary" }, { "glytoucan_ac": "G49374CL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49380CI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49382OI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G49383JW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G49401CB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G49401NP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G49401WK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49407NB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49415CD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49422BR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49424TY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G49427FH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49440XK", "type": 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"G49503QY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49504EC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49504OJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G49511LO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49515VE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49538NZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49544FY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49546QC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49562JB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49574MN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49580XQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49582YX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G49585QR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49585UA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49588KJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49590HY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49596EV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G49601RS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49604DB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49614MN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49616WZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49637LS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49638DJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49647LX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49648IC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49664YG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49665PK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49667YW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49669MC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49671ZX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49701HE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49705DA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49721VX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G49721WT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49743VF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49753HC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49754EX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49768YY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49769PU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G49777JB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49785PR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49800TU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49827WK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49830JU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49832FF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49838WZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49839AV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49840MH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G49842UJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49843SR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49844TL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49852AB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49861OY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49870FT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49872TN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49877FC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49888UY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G49889OJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G49900EU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49915LA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49923GC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G49928PT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49930HB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49933AX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G49935CA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49961MS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G49961XO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49963FN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49980RY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49984EZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49991UY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49993RR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49994RB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50008SH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50008TR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50013XL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50018IB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50018IL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50023BR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50032MO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50036VV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50058RB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50064HP", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G50068PO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50071YW", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G50076JD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50078RT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50103BI", "type": "N-linked", "subtype": "Tetraantennary" }, { 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"type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50273OO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50293EM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50315FC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50325PK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50327BS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50327WN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50329HB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50337FA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50337ZH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50338LJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50343XZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50349SK", "type": "N-linked", "subtype": "Complex" }, { 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"Tetraantennary" }, { "glytoucan_ac": "G50549VU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50553IT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50553TX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50554LM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50567GM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50573QG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50579NE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50584UT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50609NM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50626AY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50629FM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50636SI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50638US", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50639MB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50644WX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50645MF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50658WG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50659JL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50660UT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50664WQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50680HC", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G50690RH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50697EP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G50706US", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50707YR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50709EY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50728CA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G50730KL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50731QB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50735MY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50739NP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50753GN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50775RM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G50779LX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50782HI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50782LR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50783JY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50783YN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50785UU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50791ES", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50798YC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50817TZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50821RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50825VR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50826PR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50829CY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50837EH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50839HB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50842FY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50842MS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50845UM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50869YE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50871KO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50880EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50888WV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50893BA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G50896TP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50898VZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50901FO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50903RY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50915WK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50916FM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50932PM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50933UG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50943ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50959AX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50964YW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50968FP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50976TT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50997KD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51004EY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51007QO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51013PJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51014ET", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51018GI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51022NV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51023KG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51024RU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51024ZU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51041MW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51045EJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51050LD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51057KO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51064SM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51065AQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51066TO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51074KT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51086FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51093RA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51098AA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51107TC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51114UP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51117HW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51119RL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51122PB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51168MK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51170KR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51175PR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51177EP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51188ML", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51212OK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51229TU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51229VG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51243XN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51244YW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51265ES", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51266ML", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51274LI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51278BZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51299JY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51299WN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51302HQ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G51324UL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51333KM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51347IO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51353BD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51358LW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51358WW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51367TM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51369CD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51370GD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51371SK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51378TN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51384DR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51402XK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51402YN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51411MW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51414AT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51419BH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51429SM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51444LH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51448NK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51452KY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51461ZF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51471ON", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51472TJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51490BW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51496DK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51497BL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51508GQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51519NL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51527NY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51530ER", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51537NW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51539FX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51562OR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51579YE", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G51586BA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51590AN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51601CL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51601UI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51602JA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51613CP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51623PN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51624KI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51630AR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51654CU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51657FI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51670CS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51677OC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51683DQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51688VK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51699IR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51699JN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51699UE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51705EB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51710QD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51714ZS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51739IA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51743KG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51758ZU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51766BE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51766BM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51766KQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51768ZH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51771NH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51777FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51778XS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51789EV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51793MY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51799AX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51806IG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51823DN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51850PT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51872EK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51877JL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51878LH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51880YN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51885AW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51891DI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51896IF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51908QJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51916PY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51921XC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51923CR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51929IB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51930XP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51941GC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51941IR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51942GM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51947SS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51949TL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51955KU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51956RJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51971TR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51977RC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51987NK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51994GS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52003QG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52004GX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52021KR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52034SY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52038JM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52052SO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52056FF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52064IJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52070UO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G52080EW", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G52080WL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52092BL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52104IE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52104WT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52108KM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52112MC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52115YC", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G52118BC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52121AE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52122ZD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52126RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52136DL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52150TA", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G52153CS", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G52166GV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52187WF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52196ZK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52207DQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52210EC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52210JX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52216BO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52224MB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52225DV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52231BF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52233HF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52233KF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52238TO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52242HT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52243SU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52266YB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52268EM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52286UI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52303GC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52308CG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52308VC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52315WT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52328DX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52333AW", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G52333TF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52336LJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52345FK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52351WJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52354QX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52358FD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52360PJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52361ZH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52362GH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52367IH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G52367SW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52383QH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52393JB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52428MJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52441NC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52460GS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52461YB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52477OC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52483OL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52497YI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52501SI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52518HE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52522DG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52524GO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52526MZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52528BB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52544PQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52567OL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52576WH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52593LK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52595TD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52596KQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52603AI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52605PN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52621OJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52622SW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52622YD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52627IB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52632FK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52633YA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52637RD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52645LW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52649HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52649ZM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52663AD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52667KU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52671WK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52674YL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52676LZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52677OK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52692IB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52701UC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52709PE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G52724WY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52737IA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52738GQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52770HR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52773YO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52776UT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52781ZE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52782YT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52790YS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52793JJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52794WN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52801WH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52802XR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52803GQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52811KI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52823TN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52832CE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52849RL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G52866KC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52880ZF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52880ZN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52882GL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52886CK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52886RR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52892AY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52892OT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52894LG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52916IV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G52928OQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52932JK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52934AK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52935OC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52956BX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52961JQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52962ZI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52965YW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52971DE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52993PA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52993TN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53000RQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53004AU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G53010IM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53028BV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53031JB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53038IF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53046TR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53050ZJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53054ED", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53093MO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53096UD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53098FA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53099KV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G53108IN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53117BJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53118DD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53136EC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53149XZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53151DR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53152AK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53156MG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53168IY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53170RJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53173PI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53178HH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53190JD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53203UH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53214SL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53219PO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53227QM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53230JC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53234IR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53235OX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G53241XQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53259FL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53267EL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53272SL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53276NK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53280MT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53288JQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53321KU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53322JT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53342MA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53342VT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53347XD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53361RA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53362HD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53366RQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53372OG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53375JJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53386CI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53396PX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53401FX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53417AA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53428EC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53428UB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53447VR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53450AF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53452PP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53454TA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53460CX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53466CV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53466SI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53471VF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53476DF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53477PE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53479GY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53480VH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53485VW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53487ZB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53492UE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53504BR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53520XD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53521RZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53527OK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53539XB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G53554AL", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G53562KP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53562VK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53565EY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53567BY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53568AO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53572UK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53574BW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53582JE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53604QR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53605PF", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G53617YM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53657SK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53665DJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53667CH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53672HJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53675DS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53676AB", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G53682XE", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G53683RC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53692JL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53709ZS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53718RP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53719HM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53723XK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53725UB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53728DU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53733BK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53738ZH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53743EA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53752QB", "type": "N-linked", "subtype": 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"G53808AO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53809CJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53812BX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53817FJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53818ZZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53840IC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53854XZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53857IH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53858MF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53859QY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53870ES", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53889SN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53893QL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53894HD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53899GT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53908VX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53921KT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53923UR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53931MC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53933HU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G53934HB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53944MR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53950KA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53956RO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53961AS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53962WT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53965RU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53966GL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53975EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53977IC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53985AY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53989JC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53989ZN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53993HS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53996MC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54000LQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54010TZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54018RP", "type": "N-linked", "subtype": "Tetraantennary" }, { 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"subtype": "Hybrid" }, { "glytoucan_ac": "G54846SY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G54852KP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54873FX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G54884LT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54893WF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54904QW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54929QT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G54931GY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54934XS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G54945DX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G54945YG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54950JZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G54951OQ", "type": 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mannose" }, { "glytoucan_ac": "G56227XX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56236YW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56238AO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56246PC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56256XB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56259BH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56265BA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56265FS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56269EA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G56271ML", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56271TF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G56297BE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56301MI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56305UG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56318NV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56321MP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56322NE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56326BL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56327CO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56329KE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56339QG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56340GX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56341HY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56354PO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56363CH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56364PT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56376TA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56381GN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56381GU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56400AL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56408DR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56414XE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56427QU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56443JQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56461GY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56469EY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56485SI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56491QJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56492IM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56492JP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56492TA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56494BW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56499YQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56501FP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56505IP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56512DX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56513YH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56516KW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56517YZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56536TQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56546LQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56549DH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56553LA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56555MU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56558EP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56571DA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56577TY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56586OT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56587AF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56587UN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G56591LC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56615HF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56616DG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56616ZH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56621NM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56621UX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56634KC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56637AG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56637MM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56653RI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56655CC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56657CK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56676FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56678WD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56690OG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56691CA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56691UE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56696EG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56703XH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56720TK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56721EV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56724VL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56732CH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56732OZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56737NO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56740AO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56748EO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56749GV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56750OE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56751DL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56770AH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56784HS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56791SN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56809FB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56809XB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56811RE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56811US", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56822OW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56825HR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56827BA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56830SM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56837YQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56840FF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56845UM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56850HF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56851CO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G56852BX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56856OI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56862WE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56867YK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56869RQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56876DF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56891ZN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56893CG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G56894NB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56901SP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56903ZB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56923VL", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G56952FZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56955UZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56963QZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56966HC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56970BU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56972PM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56977BH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56988MG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57001BK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57001PH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57007KH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57015NB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57028QM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57032GX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57036KN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57040DY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57044IA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57046ME", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57051OG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57052CH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57065EQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57066LA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57075KG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57075OH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57081OR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57081YJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57083FO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57084IU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57092OJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57097HI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57104RA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57112FM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57117TO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57125VL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57141NR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57147TR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57149GY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57149TQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57153UY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57158CS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57166CI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57174DL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57197YA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57201XR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57204IX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57208CK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57220BY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57227VQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57228LQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57229FV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57239MG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57245TH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57248BB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57250OO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57250WI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57257XQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G57262WV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57265QF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57267KB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57277JN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57284YH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57292SX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57295PS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57300MW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57302WZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57305NS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57316XZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57320FY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57327CC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57329WU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57337SH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57338PU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57345HS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57368BE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57378FT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57379XV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57390CG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57410TH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57411WE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57412IS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57413CY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57413FT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57422AW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G57425PF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57429KQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57429OV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57435DB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57437DS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57449OF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57453LX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57453XN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57466QX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57484FV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57504TA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57521CV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57521IA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G57522MT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57532HE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57538OG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57539MP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57550HS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57551SM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57565PX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57565TQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57569CO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57580SM", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G57586DT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57595UE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57601AP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57601XR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57607BW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G57611UV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57616BR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57626SM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G57627IF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57630ZT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57636PP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57647XA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57660JQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57667LR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57671LP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G57671SP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57674NM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57675TR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57677EU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57678YQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57701HX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57707WO", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G57710DC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57710XG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57713YP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57727DN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G57729TT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57740WC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57741SS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G57759SY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57762GE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57774MT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57787IU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57789QC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57814LX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57818FI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57824KO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57826CO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57832QR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57835AK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57843KJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57850KN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57861RA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57863LA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57865EW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57881VN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57887UL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57914GV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57923KF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57930PW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57937LQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57941UT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57943ZV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57951WQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57955DP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57956SV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57960MN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57970DP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57970NA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57971XD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57976DO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57989AD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57997IN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57999XS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58004KD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58016LU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G58022PN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G58025LK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58029XR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58039DV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58039UH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58039VY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58056LQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G58094IZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58105JF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58111YY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58117BV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58120SB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58125CJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58140YV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58141VU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58143RL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58159CO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58159SU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58169AH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58169YV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58181DB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58183RP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58194JW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58198HJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58203BP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G58207MU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58213EE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58214IQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G58216EF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58217PN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G58217PP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58219MI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58230FJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58232MG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58233BW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58235TZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58236FD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58242XJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58244GN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58251YC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58254FJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58268WC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58278VO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58281SK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58284AM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58288KD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58303SV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58315CQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58315IU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G58318ME", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58328JK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58331OS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58331XF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58337JV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58338QG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G58350LJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58353SH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58366KN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58370UT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58381OV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G58384AV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58386NJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58392LT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58403SV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58404RD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58413WQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G58422UX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58423MZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58424NI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58428QZ", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G58444TO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58454XF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58455IE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58473KL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58478JZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58481XO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58483GX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58489ZK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58516UP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G58517TJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58521VQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58527GP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58547FH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58551VR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58561KE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58570WR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58571IP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58574AT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58576YF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58585VA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58585VB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58599KY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58611PK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58630HT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58631QJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58655LE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58660FK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58666XJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58667NI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58683UL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58692HO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G58736XQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G58742HD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58745BP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58746AB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G58750CR", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G58758AM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58768FH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58777MN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58780EA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58783PZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58788RE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58789DD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58798VN", 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"G61608CO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G61614JZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61620LE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61627IG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61634RX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61636KP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61658ZF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G61676ER", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61684ET", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61688NU", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G61688RD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61692RF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61698UE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61702UX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G61703BU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61705AR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61706MD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G61707PW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61711ER", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61714PI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G61717FA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G61717JN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61717WJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61718TK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61718WP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61721PG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61726TP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G61734US", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61740EX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G61751GZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G61768GE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61782PB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G61792ET", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61794OV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61800QD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61809IS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61819UR", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G61831UB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G61832KO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G61833IO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G61838OT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61842MB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61846BY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G61862EM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61862FV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G61866NY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61874BV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G61878VZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61884GF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61894MD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G61903HE", "type": "N-linked", "subtype": "Complex" 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"type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61983AR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G62001BJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62012YS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62018FE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62018IE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62021HG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G62034LF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G62046IZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62047TQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62048AU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62065AQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62074BC", "type": "N-linked", "subtype": 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"type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62900AI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62911FK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G62922WK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G62930AH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62941VF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62945MQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62951MX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62955WI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G62955ZH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G62958XQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G62959NG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62960MX", "type": "N-linked", "subtype": "Triantennary" }, { 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"N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G63024BG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G63035DM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G63036JK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G63038RA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63043UR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63045FB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G63046OH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G63065KG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G63065ZE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63066XE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G63069YK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G63074CQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": 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"type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G67215MI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G67223RN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67226SQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G67232FT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G67233WP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G67235NM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67235NZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G67238MB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67262JO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G67263WT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G67272IA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G67277CQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { 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"N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G67381VP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G67385FR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G67393WG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67410LQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G67411ST", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67413BG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G67445ME", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G67449TK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67452TN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67457ES", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G67458ZW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G67465JK", "type": "N-linked", "subtype": "Triantennary" }, 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"N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G70115BG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70116BN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70120IK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70144QU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G70160EA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G70161WP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70163ZD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70187MS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70192AL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70192XQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G70193YQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70194YY", "type": "N-linked", "subtype": "Triantennary" }, { 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"Triantennary" }, { "glytoucan_ac": "G70301QJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70342DW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70355HG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G70358QM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G70364ZU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70365AB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70374BH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70374KJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70377VS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G70382WT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70387YT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70408IO", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G70409RP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70410NP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G70416NC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70422TE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G70439DD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70442IZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70446JV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G70474PL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G70477ZP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70478PS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70486AZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G70490JW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70494TJ", "type": "N-linked", "subtype": "Tetraantennary" }, { 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"subtype": "Triantennary" }, { "glytoucan_ac": "G70593DF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G70594XD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70602JC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70613ZY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G70617CF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70620RA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70628DE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70634FB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70635AM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70640QN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70642RS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70647ZZ", "type": "N-linked", "subtype": "Complex" }, { 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"subtype": "Triantennary" }, { "glytoucan_ac": "G70736PI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G70737VI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70743LN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70747LW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70751HC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70754FJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G70757BE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70757IC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70765RP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G70800WO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G70801XH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70809KI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70812GK", 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"N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71388EZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G71388ZW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71397MM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71400IH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71402WV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71405MT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71407IE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G71423CR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71426FU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71431OY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71442FU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71451NN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71457DK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71457WH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71470CO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71479BM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71494ZG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71496TN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71497KK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71513XV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71527NE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71529OW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71530LK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71534SX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G71537VS", "type": "N-linked", "subtype": "Hybrid" }, { 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"Tetraantennary" }, { "glytoucan_ac": "G71626LI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71641HW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71642SB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71642WP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71652FK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71657LE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71658OE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71662HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71665YK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71670JD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71673XZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71679MX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71681UC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G71690HK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71692BW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71695GS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71704AG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71714EQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G71717JL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71743PO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71754ZD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71765ZO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71782CJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71785HW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71794ZO", "type": "N-linked", "subtype": "Other" }, { 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"N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71943TB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71944BB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71957GO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71957HT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71958HL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G71972AT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G72012LY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G72012QU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G72018SI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G72035XH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G72037LH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G72043OX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": 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mannose" }, { "glytoucan_ac": "G72103VZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G72107SE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G72108NZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72108VJ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G72112RK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72121YB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72125QI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G72128LZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72131JM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G72138YE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72145TT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G72156EQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72163CE", "type": 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"type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80658SC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80661IW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80661YI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G80664ZC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80673NC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80674SM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80677GP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80678MA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80685EK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80690HD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80710QD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80711CX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80713VB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80715XM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80717KS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80728XN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80729WA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80733LA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80735WD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80748AR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80751HR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80756MK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G80759CD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80762EP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80764EX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80767XX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G80799RX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80804PR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80822MI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80825SQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80843UM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80848DN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80858MF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80860VS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G80861DM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G80879CT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80920TO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80941UI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80943NY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80945SX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G80952QT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80962OX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80965ZR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80966KZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G80976MC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81059IE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81059ME", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81060HV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81070NY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81085EP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81096RM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81101GO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81103GZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81107PN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81114MS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81121OC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81128IY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81150TA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81153QC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81157IG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81174YQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81180VS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81185MJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81201TR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81213MH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81230EA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81236JR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81247WU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81247ZO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81250HV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81253FL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81266TW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81269JJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81282CC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81284BY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81294AE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81294QU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81294ZY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81295TF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81309GY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81324MV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81326IN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81328FA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81331ZW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81332EX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81333SO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81335DJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81338NH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81342EO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81347KY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81348LS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81349OI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81353SK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81356NS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G81356WP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81358TE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81367CM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81378WC", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G81380NE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81384WY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81389EF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81392TU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81397LO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81397TP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81410HG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81413UE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81422ZI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81424HL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81430ON", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81436EU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81443QG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81450VD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81456UA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81459MV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81473LO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81486AM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81486NO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81497EL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81499XS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81505ER", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81528UX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81529JB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81533QQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81536GE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81547WL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81550KQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81554CS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81559KQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G81561UL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81575FZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81581UV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81591DR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81594BH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81599LG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81601EB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81604KV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81612UJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G81617NU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81621ZO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81632RP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81649FJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81650EZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81654JV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81676AR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81677FM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81699VA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81707CP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81711AO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81711SM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81713YZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G81728BG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81734TI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81738MQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81753QM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81771HX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81773GO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81773XZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81795JQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81796XK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81804CZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81806PG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81813WJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81819VG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81832HJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81852HN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81853KM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81865HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81869MY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81873QA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81874XM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81877PA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81880UQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81896KF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81898FC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81906GK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81910BW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81912AC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81914RV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81915YU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81923ER", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81929UP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81933FO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81939AD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81944OG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81945DA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81954US", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81960EK", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G81980VO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81999RZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82011YF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82019GV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82020ZR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G82031FD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82033VN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82035KS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82036CW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82048NP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82050MN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82052RE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82057XC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82068QZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82080SP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82081LV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82107QK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82110HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82113OO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82126PQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82127HP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82127SW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82130LG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82136RX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82138AT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82140BL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82159VB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82168GG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82169SQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82188BV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82190TD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82195FD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82201FU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82201IZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82207VX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82210CH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82216QD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82216WQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82221BU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": 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"Tetraantennary" }, { "glytoucan_ac": "G84783MC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G84783XD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84788BD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G84791TM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G84791YT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84798NE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G84800HV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84803GY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G84811LS", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G84817HK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G84828LL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84838NP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84851OD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G84852GW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G84874EV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84877YR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G84879CH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84881ST", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G84882JT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G84887KU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G84901UD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G84907VY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84908OR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G84936AV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84942JJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84942UA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G84959GE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84964KJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84975AL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G84975VY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G84981PB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84999OJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85011TV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85012LW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85014UF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85032FC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85041WE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85046IS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85059ID", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85064LJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85067IV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85075CJ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G85085MS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85085RX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85087EW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85093QP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85095TB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85098WU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85100QD", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G85101OA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85102OH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85106DS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85115PB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85116XO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85116ZD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85121LW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85121UD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85122WC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85139RC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85141ZP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85143CH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85149ZK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85153TQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85159UF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85176IW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85180ML", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85192EG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85194VU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85196GZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85196QC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85200FA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85200GZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85207ZD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85208SY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85217XJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85218JS", "type": "N-linked", 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"type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85295QB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85300QB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85302QR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85304RG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85307IL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85317AM", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G85319UV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85324DR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85331PK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85342QJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85358BW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85401TI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85417QF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85422JN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85422ZY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85425ER", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85432BM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85439GN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85440DN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85447US", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85450FH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85450ZF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85453OX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85458AY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85460ZG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85471HV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85472XF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85479RL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85479TB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85484EY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85486ZV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85501TK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85507NU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85511WQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85518DR", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G85526SO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85530IT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85542EC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85542KD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85544LX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85545IG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85552VO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85555HC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85562TB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85589PR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85590UT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85599NG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85623YE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85624MU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85626MC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85627UH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85628JQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85652EW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85652RK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85656BP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85657EG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85662XZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85678WN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85691HG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85702AE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85709JZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85723NH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85726QE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85737WG", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G85739JW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85750HN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85755BV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85757BC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85762WP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85767HW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85768QF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85785GS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85790MP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85792MM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85804VV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85807QC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85809SI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85827ES", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85839YN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85843WY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85856NQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85858QM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85862JT", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G85871ZA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85878DB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85882GP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85885QD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85890MM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85891FA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85891RL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85891WT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85893DL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85895SP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85900AY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85932XJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G85940FB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85940OV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85953MG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85974HF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85989DY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85992CY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85995ON", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G86002PC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G86002XK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G86005HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G86017AU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G86018QV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G86022PE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G86030CA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G86032CI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G86038AT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G86038NB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G86053IC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G86065DJ", "type": "N-linked", 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"G87217OF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G87226LJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G87228KQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G87244OY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G87247VU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G87255WD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G87258FC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G87260SO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G87264NH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G87267JO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G87271ZT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G87273JO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G87279EE", "type": "N-linked", "subtype": 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"type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G87470NI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G87470OA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G87479QY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G87485GH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G87489PB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G87494VN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G87499NX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G87503IV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G87505EW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G87513SK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G87519TU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G87535DG", "type": "N-linked", "subtype": "Core-fucosylated" }, { 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"N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G88537AB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G88537BJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G88555GL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G88560DE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G88561PH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G88569LV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G88573LZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G88582ZD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G88586VC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G88605BA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G88621MY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G88641WO", "type": "N-linked", "subtype": "High mannose" }, { 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"subtype": "Tetraantennary" }, { "glytoucan_ac": "G88757PX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G88779WR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G88784SV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G88786SD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G88800UV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G88807WA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G88814KX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G88818UA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G88827CD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G88833YC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G88844KJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G88855XF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G88864DI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G88864RV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G88865JK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G88876JD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G88876JQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G88878CV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G88879NY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G88884NJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G88885UE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G88897CI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G88902YW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G88904EB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G88904IL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G88928GI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G88948CY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G88963CA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G88966ZO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G88972LX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G88992QY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G88998CC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G89001GU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89006RL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89026PK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89033SQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89036WC", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G89038KG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89049LM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89056YX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89058RF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G89071OV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89080KU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89080QE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89090HJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G89091LQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89096IL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G89105EP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89109GC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G89117DH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89119YB", "type": "N-linked", "subtype": 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"glytoucan_ac": "G89202HP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89205LT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89206JP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89206MS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89222FP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89228LP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89233TP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89241QS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89253ZV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89255EP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89261EQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89264TR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89264ZR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89279QH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89282EC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89283LM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89285HT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89285QP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89290XU", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G89295QX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89307HV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89317SY", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G89319AW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G89323TE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89325VN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89333YV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89343RJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G89345GA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89353OJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89362MU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89364NG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89365KN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89366NN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89370FG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89375LQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89378FW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89378UY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89395YL", "type": "N-linked", "subtype": "Complex" }, { 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"type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89619KY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89620UQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89623PK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89624LF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89632SS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89637WE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89641ZV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89654YT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89658RO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89663TB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89664KV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89669IB", "type": "N-linked", "subtype": "Hybrid" }, 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"subtype": "Hybrid" }, { "glytoucan_ac": "G89794YL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89799OK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89803GR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89808TP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89814XX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89826GE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89835HT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89838LO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G89839UI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89841WS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89845CN", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G89846HT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89857VC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89858HW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89864BN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89865CB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89868JS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89870WK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89877QI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89878ZY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89891DR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89895CK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G89905SH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89908RT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G89911NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89920YU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89923TD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89932GS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G89941FZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89948KF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89949WN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89950AZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89950GK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89955WO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89970IY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89978EP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89982KK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89982OT", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G89993FE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89999GG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90000WS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90017UO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90023TN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90028HY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90033AN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90052RE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90065BD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G90081OR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90091ZQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90099GV", "type": "N-linked", "subtype": "Complex" }, { 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"Triantennary" }, { "glytoucan_ac": "G90202LF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90204HK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90206GU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G90208CJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90223GH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90223PU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90238QO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90241LW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90244AZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G90249RX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G90260XX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90263JN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G90267TS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90290ME", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G90304FZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90305AF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90308YV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G90316QJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G90334KL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90342RA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90348RI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90348SA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90352XZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90356TP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90363CW", "type": "N-linked", "subtype": "Bisected" }, { 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"type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90721DM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G90721SF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90725ZC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90737HD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90743AT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90745FS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90755RV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90764JW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90766ZI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G90768FC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90769IN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90779DH", "type": "N-linked", "subtype": "Triantennary" }, { 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"subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90974PL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90974RE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90980KD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90983BT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90983OS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90987JA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90995MU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90996TK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90999CW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91005JW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91020HW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G91020ZU", "type": "N-linked", "subtype": "Triantennary" }, { 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"subtype": "Triantennary" }, { "glytoucan_ac": "G91077AF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91088AF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G91089ZR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G91094LD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91096AR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G91096JD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91103IY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91114LN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91121ZF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91125VM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91130VE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91144YH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G91147LL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91150PB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G91151XY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91155GP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G91156HJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91159AV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91164NP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91177IA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91179XY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91180QG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91193KQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91199QX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91203RO", "type": "N-linked", "subtype": "Triantennary" }, { 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{ "glytoucan_ac": "G91297KX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91302LT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91302UR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91303GW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91303IT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91312MX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91322IG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91322RL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91330NI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91336KZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91337ZP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91344HC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91345JE", "type": 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"type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91972CK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91977ZB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91979JZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G91986AA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91990UK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G92003CT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G92008YL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G92009KQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G92015OM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G92021FW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G92024SL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G92034PX", "type": "N-linked", "subtype": "Core-fucosylated" 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"https://www.ebi.ac.uk/interpro/entry/IPR027819", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515791", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515791", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QPFYTSV", "url": "https://omabrowser.org/oma/group/QPFYTSV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AZU9", "url": "https://www.orthodb.org/?gene=A0A287AZU9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31855", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31855", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31855:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31855:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15019", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15019", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AL39", "url": "https://www.uniprot.org/uniprotkb/A0A287AL39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AL39-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B418", "url": "https://www.uniprot.org/uniprotkb/A0A287B418", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B418-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B418-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1TCE0", "url": "https://www.uniprot.org/uniprotkb/A0A8D1TCE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1TCE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1TCE0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTLCPPPSPAVAKTEIALSGESPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEITFLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIVLEGTERMEDQGQSIIPMLTGEVIPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSSAEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMYAPYPTTHIDVDINTVKQMPPCHEHIYNQRRYMRSELAAFWRATSEEDMAQDTVIYTDESFTPDLNIFQDVLHRDTLVKAFLDQVFHLKPGFSLRSTFLAQFLLVLHRKALTLIKYIEDDTQKGKKPFKSLRNLKVDLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMTF", "length": 481, "header": "tr|A0A287AZU9-1|A0A287AZU9_PIG Isoform 1 of C9orf72-SMCR8 complex subunit OS=Sus scrofa OX=9823 GN=C9orf72 PE=4 SV=1 CANONICAL=A0A287AZU9-1" }, "isoforms": [ { "isoform_ac": "A0A287AL39-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9/entry#A0A287AL39-1", "sequence": { "sequence": "MSTLCPPPSPAVAKTEIALSGESPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEITFLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIVLEGTERMEDQGQSIIPMLTGEVIPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSSAEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMYAPYPTTHIDVDINTVKQMPPCHEHIYNQRRYMRSELAAFWRATSEEDMAQDTVIYTDESFTPDLYVMPCLVLS", "length": 373, "header": "tr|A0A287AL39-1|A0A287AZU9_PIG Computationally mapped isoform of C9orf72-SMCR8 complex subunit OS=Sus scrofa OX=9823 GN=C9orf72 PE=4 SV=1 CANONICAL=A0A287AZU9-1" }, "locus": { "chromosome": "10", "start_pos": 38409175, "end_pos": 38395644, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051717.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051717.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044619.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044619.2" } ] } }, { "isoform_ac": "A0A287AZU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9/entry#A0A287AZU9-1", "sequence": { "sequence": "MSTLCPPPSPAVAKTEIALSGESPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEITFLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIVLEGTERMEDQGQSIIPMLTGEVIPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSSAEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMYAPYPTTHIDVDINTVKQMPPCHEHIYNQRRYMRSELAAFWRATSEEDMAQDTVIYTDESFTPDLNIFQDVLHRDTLVKAFLDQVFHLKPGFSLRSTFLAQFLLVLHRKALTLIKYIEDDTQKGKKPFKSLRNLKVDLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMTF", "length": 481, "header": "tr|A0A287AZU9-1|A0A287AZU9_PIG Isoform 1 of C9orf72-SMCR8 complex subunit OS=Sus scrofa OX=9823 GN=C9orf72 PE=4 SV=1 CANONICAL=A0A287AZU9-1" }, "locus": { "chromosome": "10", "start_pos": 38414249, "end_pos": 38395644, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052740.2", "url": "https://www.ensembl.org/id/ENSSSCT00000052740.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049485.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049485.1" } ] } }, { "isoform_ac": "A0A287B418-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9/entry#A0A287B418-1", "sequence": { "sequence": "MSTLCPPPSPAVAKTEIALSGESPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEITFLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIVLEGTERMEDQGQSIIPMLTGEVIPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSSAEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMYAPYPTTHIDVDINTVKQMPPCHEHIYNQRRYMRSELAAFWRATSEEDMAQDTVIYTDESFTPDLSTSEAYGGNIFQDVLHRDTLVKAFLDQVFHLKPGFSLRSTFLAQFLLVLHRKALTLIKYIEDDTQKGKKPFKSLRNLKVDLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMTF", "length": 489, "header": "tr|A0A287B418-1|A0A287AZU9_PIG Computationally mapped isoform of C9orf72-SMCR8 complex subunit OS=Sus scrofa OX=9823 GN=C9orf72 PE=4 SV=1 CANONICAL=A0A287AZU9-1" }, "locus": { "chromosome": "10", "start_pos": 38414249, "end_pos": 38395644, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047297.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047297.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050865.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050865.2" } ] } }, { "isoform_ac": "A0A8D1TCE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9/entry#A0A8D1TCE0-1", "sequence": { "sequence": "MSTLCPPPSPAVAKTEIALSGESPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEITFLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTELSFYLPLHRVCVDRLTHIIRKGRIWMHKGQSIIPMLTGEVIPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSSAEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMYAPYPTTHIDVDINTVKQMPPCHEHIYNQRRYMRSELAAFWRATSEEDMAQDTVIYTDESFTPDLNIFQDVLHRDTLVKAFLDQVFHLKPGFSLRSTFLAQFLLVLHRKALTLIKYIEDDTQKGKKPFKSLRNLKVDLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMTF", "length": 461, "header": "tr|A0A8D1TCE0-1|A0A287AZU9_PIG Computationally mapped isoform of C9orf72-SMCR8 complex subunit OS=Sus scrofa OX=9823 GN=C9orf72 PE=4 SV=1 CANONICAL=A0A287AZU9-1" }, "locus": { "chromosome": "10", "start_pos": 38414249, "end_pos": 38395644, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012052.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012052.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011744.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011744.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1TCE0", "url": "https://www.uniprot.org/uniprotkb/A0A8D1TCE0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515791", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515791", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XPZ0-1", "protein_name": "C9orf72-SMCR8 complex subunit", "gene_name": "C9orf72", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSALCPPPSPAVAKTEISMNGESPLLAATFAYWDNILGPRVRHIWAPKTDQVLLSDGEITFLANHTLNGEILRNAESGAIDVKFFVLAEKRVIIVSLIFDGNWNGDRSTYGLSIILPQSELAFYLPLHRVCVDRLTHIIRKGRIWMHKERQEHFQKIVLEGTERMEDQGQSIIPMLTGEVIPVMELLSSMKSHSVPEEIDISDTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSSAEKVNKIVRTLCLFLTPSERKCSRLCRSESSFKYESGLFVQGLLKDATGSFVLPFRQVMYAPYPTTHIDVDVNTVKQMPPCHEHIYNQRRYMRSELTAFWRANSDEEMSQDPIIHTDESFTPDLNVFQDILHRDTLVKAFLDQIFHLKPGLSLRSTFLAQFLLVLHRKALTLIKYIEDDTQKGKKPFKSLRSLKIDLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYISVQERDMLMTF", "length": 481 }, "evidence": [ { "id": "A0A287AZU9", "url": "https://omabrowser.org/oma/group/A0A287AZU9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q66HC3-1", "protein_name": "Guanine nucleotide exchange factor C9orf72 homolog", "gene_name": "C9orf72", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSTICPPPSPAVAKTEIALSGESPLLAATFAYWDNILGPRVRHIWAPKTDQVLLSDGEITFLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIVLEGTERMEDQGQSIIPMLTGEVIPVMELLASMRSHSVPEDLDIADTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSSAEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDATGSFVLPFRQVMYAPYPTTHIDVDVNTVKQMPPCHEHIYNQRRYMRSELTAFWRATSEEDMAQDTIIYTDESFTPDLNIFQDVLHRDTLVKAFLDQVFHLKPGLSLRSTFLAQFLLILHRKALTLIKYIEDDTQKGKKPFKSLRNLKIDLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMTF", "length": 481 }, "evidence": [ { "id": "A0A287AZU9", "url": "https://omabrowser.org/oma/group/A0A287AZU9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6DFW0-1", "protein_name": "Guanine nucleotide exchange factor C9orf72 homolog", "gene_name": "C9orf72", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTICPPPSPAVAKTEIALSGESPLLAATFAYWDNILGPRVRHIWAPKTDQVLLSDGEITFLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIVLEGTERMEDQGQSIIPMLTGEVIPVMELLASMKSHSVPEDIDIADTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSSAEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDATGSFVLPFRQVMYAPYPTTHIDVDVNTVKQMPPCHEHIYNQRRYMRSELTAFWRATSEEDMAQDTIIYTDESFTPDLNIFQDVLHRDTLVKAFLDQVFHLKPGLSLRSTFLAQFLLILHRKALTLIKYIEDDTQKGKKPFKSLRNLKIDLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMTF", "length": 481 }, "evidence": [ { "id": "A0A287AZU9", "url": "https://omabrowser.org/oma/group/A0A287AZU9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96LT7-1", "protein_name": "Guanine nucleotide exchange factor C9orf72", "gene_name": "C9orf72", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSTLCPPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHIWAPKTEQVLLSDGEITFLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERMEDQGQSIIPMLTGEVIPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSSAEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMYAPYPTTHIDVDVNTVKQMPPCHEHIYNQRRYMRSELTAFWRATSEEDMAQDTIIYTDESFTPDLNIFQDVLHRDTLVKAFLDQVFQLKPGLSLRSTFLAQFLLVLHRKALTLIKYIEDDTQKGKKPFKSLRNLKIDLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMTF", "length": 481 }, "evidence": [ { "id": "A0A287AZU9", "url": "https://omabrowser.org/oma/group/A0A287AZU9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 12, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "main axon", "id": "GO:0044304", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044304", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "P-body", "id": "GO:0000932", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000932", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "autophagosome", "id": "GO:0005776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005776", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "Atg1/ULK1 kinase complex", "id": "GO:1990316", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990316", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "axonal growth cone", "id": "GO:0044295", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044295", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor complex", "id": "GO:0032045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032045", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "presynaptic cytosol", "id": "GO:0099523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099523", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AZU9" } ], "pmid": "" }, { "name": "positive regulation of macroautophagy", "id": "GO:0016239", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016239", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZU9", "url": 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"MQATPSEAEVGSESPKSCVSAAQSDWTAEKPVSLLAPLVPPRSAGQPLTFGPSGLQPLRSLLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPSMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGATSGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEAMIKAEESSKQEECTTTSAAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVGGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAVQDQSVEVSSNTGEETSKQEAVADFTPKKEEEENQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ", "length": 976, "header": "tr|A0A287AX30-1|A0A287AX30_PIG Isoform 1 of Pre-mRNA-processing factor 40 homolog A OS=Sus scrofa OX=9823 GN=PRPF40A PE=1 SV=2 CANONICAL=A0A287AX30-1" }, "isoforms": [ { "isoform_ac": "A0A286ZIV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30/entry#A0A286ZIV9-1", "sequence": { "sequence": "MQATPSEAEVGSESPKSCVSAAQSDWTAEKPVSLLAPLVPPRSAGQPLTFGPSGLQPLRSLLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPSMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGATSGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSAAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVGGTVPVVPEPEDQSVEVSSNTGEETSKQEAVADFTPKKEEEENQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ", "length": 962, "header": "tr|A0A286ZIV9-1|A0A287AX30_PIG Computationally mapped isoform of Pre-mRNA-processing factor 40 homolog A OS=Sus scrofa OX=9823 GN=PRPF40A PE=1 SV=2 CANONICAL=A0A287AX30-1" }, "locus": { "chromosome": "15", "start_pos": 60439608, "end_pos": 60391471, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064185.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064185.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031455.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031455.2" } ] } }, { "isoform_ac": "A0A286ZRZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30/entry#A0A286ZRZ0-1", "sequence": { "sequence": "MQATPSEAEVGSESPKSCVSAAQSDWTAEKPVSLLAPLVPPRSAGQPLTFGPSGLQPLRSLLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPSMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHGELKQEECTTTSAAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVGGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAVQDQSVEVSSNTGEETSKQEAVADFTPKKEEEENQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSVRKDFFLLEQFIHQNANIFYLTQDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ", "length": 951, "header": "tr|A0A286ZRZ0-1|A0A287AX30_PIG Computationally mapped isoform of Pre-mRNA-processing factor 40 homolog A OS=Sus scrofa OX=9823 GN=PRPF40A PE=1 SV=2 CANONICAL=A0A287AX30-1" }, "locus": { "chromosome": "15", "start_pos": 60439608, "end_pos": 60391471, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037304.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037304.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034241.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034241.2" } ] } }, { "isoform_ac": "A0A287AX30-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30/entry#A0A287AX30-1", "sequence": { "sequence": "MQATPSEAEVGSESPKSCVSAAQSDWTAEKPVSLLAPLVPPRSAGQPLTFGPSGLQPLRSLLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPSMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGATSGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEAMIKAEESSKQEECTTTSAAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVGGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAVQDQSVEVSSNTGEETSKQEAVADFTPKKEEEENQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ", "length": 976, "header": "tr|A0A287AX30-1|A0A287AX30_PIG Isoform 1 of Pre-mRNA-processing factor 40 homolog A OS=Sus scrofa OX=9823 GN=PRPF40A PE=1 SV=2 CANONICAL=A0A287AX30-1" }, "locus": { "chromosome": "15", "start_pos": 60439608, "end_pos": 60391471, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049460.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049460.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048445.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048445.2" } ] } }, { "isoform_ac": "A0A287BHV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30/entry#A0A287BHV8-1", "sequence": { "sequence": "MQATPSEAEVGSESPKSCVSAAQSDWTAEKPVSLLAPLVPPRSAGQPLTFGPSGLQPLRSLLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPSMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGATSGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSAAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVGGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAVQDQSVEVSSNTGEETSKQEAVADFTPKKEEEENQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ", "length": 994, "header": "tr|A0A287BHV8-1|A0A287AX30_PIG Computationally mapped isoform of Pre-mRNA-processing factor 40 homolog A OS=Sus scrofa OX=9823 GN=PRPF40A PE=1 SV=1 CANONICAL=A0A287AX30-1" }, "locus": { "chromosome": "15", "start_pos": 60439608, "end_pos": 60391471, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049118.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049118.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055947.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055947.1" } ] } }, { "isoform_ac": "F1RQH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30/entry#F1RQH2-1", "sequence": { "sequence": "HWEIRLSPQTSIFFLQIYMYMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHGELKQEECTTTSAAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVGGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAVQDQSVEVSSNTGEETSKQEAVADFTPKKEEEENQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSVRKDFFLLEQFIHQNANIFYLTQDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ", "length": 835, "header": "tr|F1RQH2-1|A0A287AX30_PIG Computationally mapped isoform of Pre-mRNA-processing factor 40 homolog A OS=Sus scrofa OX=9823 GN=PRPF40A PE=1 SV=4 CANONICAL=A0A287AX30-1" }, "locus": { "chromosome": "15", "start_pos": 60423953, "end_pos": 60391471, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017278.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017278.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016816.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016816.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 4, "start_aa": "Thr", "end_pos": 4, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr4", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZIV9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIV9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" }, { "id": "R-SSC-9770562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "resource": "Reactome", "description": "mRNA Polyadenylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX30", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30" } ], "pmid": "" }, { "name": "nuclear matrix", "id": "GO:0016363", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016363", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX30", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30" } ], "pmid": "" }, { "name": "U1 snRNP", "id": "GO:0005685", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005685", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX30", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30" } ], "pmid": "" }, { "name": "U2-type prespliceosome", "id": "GO:0071004", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071004", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX30", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mRNA cis splicing, via spliceosome", "id": "GO:0045292", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045292", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX30", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30" } ], "pmid": "" }, { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX30", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX30", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 314, "end_pos": 316, "annotation": "n_glycosylation_sequon" }, { "start_pos": 431, "end_pos": 433, "annotation": "n_glycosylation_sequon" }, { "start_pos": 562, "end_pos": 564, "annotation": "n_glycosylation_sequon" }, { "start_pos": 712, "end_pos": 714, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AX30-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 976, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AX30-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AX30" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AX30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30" }, { "id": "PS51676", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51676" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FF", "eco_id": "ECO_0000259", "start_pos": 412, "end_pos": 466, "start_aa": "Lys", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AX30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX30" }, { "id": "PS50020", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50020" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WW", "eco_id": "ECO_0000259", "start_pos": 177, "end_pos": 210, "start_aa": "Ser", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 4 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 314, "end_pos": 316 }, { "start_pos": 431, "end_pos": 433 }, { "start_pos": 562, "end_pos": 564 }, { "start_pos": 712, "end_pos": 714 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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} ] }, { "uniprot_canonical_ac": "A0A287AR92-1", "uniprot_ac": "A0A287AR92", "uniprot_id": "A0A287AR92_PIG", "mass": { "chemical_mass": 118299.0, "monoisotopic_mass": 118299.0 }, "refseq": {}, "gene_names": [ { "name": "MECOM", "type": "recommended", "evidence": [ { "id": "A0A287AR92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ] } ], "protein_names": [ { "name": "MDS1 and EVI1 complex locus", "type": "synonym", "evidence": [ { "id": "A0A287AR92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MECOM", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92", "locus": { "chromosome": "13", "start_pos": 107754482, "end_pos": 108335702, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011743", "url": "https://www.ensembl.org/id/ENSSSCG00000011743" } ] } } ], "crossref": [ { "id": "A0A287AR92", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AR92", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011743", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011743", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19214", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19214", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518275", "url": "https://www.ncbi.nlm.nih.gov/gene/100518275", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046341", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046341", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515:SF57", "url": 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"length": 1051, "header": "tr|A0A287AR92-1|A0A287AR92_PIG Isoform 1 of MDS1 and EVI1 complex locus OS=Sus scrofa OX=9823 GN=MECOM PE=4 SV=2 CANONICAL=A0A287AR92-1" }, "locus": { "chromosome": "13", "start_pos": 107802501, "end_pos": 107754661, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044795.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044795.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046589.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046589.2" } ] } }, { "isoform_ac": "A0A480Z2V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92/entry#A0A480Z2V8-1", "sequence": { "sequence": 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"length": 1239, "header": "tr|A0A480Z2V8-1|A0A287AR92_PIG Computationally mapped isoform of MDS1 and EVI1 complex locus OS=Sus scrofa OX=9823 GN=MECOM PE=4 SV=1 CANONICAL=A0A287AR92-1" }, "locus": { "chromosome": "13", "start_pos": 108335503, "end_pos": 107754661, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091567.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091567.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068759.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068759.1" } ] } }, { "isoform_ac": "A0A5G2R9G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92/entry#A0A5G2R9G2-1", "sequence": { "sequence": 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"length": 1023, "header": "tr|A0A5G2R9G2-1|A0A287AR92_PIG Computationally mapped isoform of MDS1 and EVI1 complex locus OS=Sus scrofa OX=9823 GN=MECOM PE=4 SV=1 CANONICAL=A0A287AR92-1" }, "locus": { "chromosome": "13", "start_pos": 107802501, "end_pos": 107758083, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088365.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088365.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072959.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072959.1" } ] } }, { "isoform_ac": "A0A5G2RDE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92/entry#A0A5G2RDE8-1", "sequence": { "sequence": 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"length": 1114, "header": "tr|F1SH30-1|A0A287AR92_PIG Computationally mapped isoform of MDS1 and EVI1 complex locus OS=Sus scrofa OX=9823 GN=MECOM PE=4 SV=3 CANONICAL=A0A287AR92-1" }, "locus": { "chromosome": "13", "start_pos": 107943568, "end_pos": 107754661, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012854.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012854.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012514.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012514.3" } ] } }, { "isoform_ac": "I3LFF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92/entry#I3LFF7-1", "sequence": { "sequence": "VILDEFCNVKFCIDASQPDVGSWLKYIRFAGCYDQHNLVACQINDQIFYRVVADIAPGEELLLFMKSEDYPHETMAPDIHEERQYRCEDCDQLFESKAELADHQKFPCSTPHSAFSMVEEDFQQKLESENDLREIHAIQECKECDQAFPDLQSLEKHMLSHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKQVFTDPSNLQRHIRSQHVGARAHACPECGKTFATSSGLKQHKHIHSSVKPFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNHFAAGGFFGQGISLPGTPAMDKTSMVNMSHANPGLADYFGANRHPAGLTFPTAPGFSFSFPGLFPSGLYHRPPLIPASSPVKGLSSTEQTNKSQSPLMTHPQILPATQDILKALSKHPPVGDNKPVELQPERSSEERPLEKISDQSESSDLDDVSTPSGSDLETTSGSDLESDIESDKEKFKENGKMFKDKVSPLQNLASIHNKKEYSNHSIFSPSLEEQTAVSGAVNDSIKAIASIAEKYFGSTGLVGLQDKKVGALPYPSMFPLPFFPAFSQSMYPFPDRDLRSLPLKMEPQSPSEVKKLQKGNSESPFDLTTKRKDEKPLTPVPSKPPATPATSQDQPLDLSMGSRSRASGTKPTEPRKNHVFGEKKGGNVEPRPASDGSLQHARPTPFFMDPIYRVEKRKLTDPLEALKEKYLRPSPGFLFHPQFQLPDQRTWMSAIENMAEKLESFSALKPEASELLQSVPSMFNFRAPPNTLPENLLRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLDRHLKKHENGNMSGTATSSPHSELESTGAILDDKEDAYFTEIRNFIGNSNHSGQSPRNTEERMNGSHFKDEKALVTSQNSDLLDDEEVEDEVLLDEEDEDNDVTGKTGKEPVTSNLHEGNPEDDYEETSGLEMSCKTSPVRYKEEEYKTGLSALDHIRHFTDSLKMRKMEDNQYTEAEVSSFSASHVPEELKQPLHRKSKSQAYAMMLSLSDKESLHPSSHSSSSMWHSMARAAAESSAIQSISHV", "length": 1116, "header": "tr|I3LFF7-1|A0A287AR92_PIG Computationally mapped isoform of MDS1 and EVI1 complex locus OS=Sus scrofa OX=9823 GN=MECOM PE=4 SV=3 CANONICAL=A0A287AR92-1" }, "locus": { "chromosome": "13", "start_pos": 107815776, "end_pos": 107754661, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026380.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026380.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022799.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022799.3" } ] } }, { "isoform_ac": "I3LUL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92/entry#I3LUL0-1", "sequence": { "sequence": "MKSEDYPHETMAPDIHEERQYRCEDCDQLFESKAELADHQKFPCSTPHSAFSMVEEDFQQKLESENDLREIHAIQECKECDQAFPDLQSLEKHMLSHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKVFTDPSNLQRHIRSQHVGARAHACPECGKTFATSSGLKQHKHIHSSVKPFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNHFAAGGFFGQGISLPGTPAMDKTSMVNMSHANPGLADYFGANRHPAGLTFPTAPGFSFSFPGLFPSGLYHRPPLIPASSPVKGLSSTEQTNKSQSPLMTHPQILPATQDILKALSKHPPVGDNKPVELQPERSSEERPLEKISDQSESSDLDDVSTPSGSDLETTSGSDLESDIESDKEKFKENGKMFKDKVSPLQNLASIHNKKEYSNHSIFSPSLEEQTAVSGAVNDSIKAIASIAEKYFGSTGLVGLQDKKVGALPYPSMFPLPFFPAFSQSMYPFPDRDLRSLPLKMEPQSPSEVKKLQKGNSESPFDLTTKRKDEKPLTPVPSKPPATPATSQDQPLDLSMGSRSRASGTKPTEPRKNHVFGEKKGGNVEPRPASDGSLQHARPTPFFMDPIYRVEKRKLTDPLEALKEKYLRPSPGFLFHPQMSAIENMAEKLESFSALKPEASELLQSVPSMFNFRAPPNTLPENLLRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLDRHLKKHENGNMSGTATSSPHSELESTGAILDDKEDAYFTEIRNFIGNSNHSGQSPRNTEERMNGSHFKDEKALVTSQNSDLLDDEEVEDEVLLDEEDEDNDVTGKTGKEPVTSNLHEGNPEDDYEETSGLEMSCKTSPVRYKEEEYKTGLSALDHIRHFTDSLKMRKMEDNQYTEAEVSSFSASHVPEELKQPLHRKSKSQEESDR", "length": 1003, "header": "tr|I3LUL0-1|A0A287AR92_PIG Computationally mapped isoform of MDS1 and EVI1 complex locus OS=Sus scrofa OX=9823 GN=MECOM PE=4 SV=3 CANONICAL=A0A287AR92-1" }, "locus": { "chromosome": "13", "start_pos": 107802501, "end_pos": 107756257, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027425.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027425.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027810.3", "url": "https://www.ensembl.org/id/ENSSSCP00000027810.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 260, "start_aa": "Thr", "end_pos": 260, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr260", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 576, "start_aa": "Thr", "end_pos": 576, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr576", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SH30", "url": "https://www.uniprot.org/uniprotkb/F1SH30" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3214841", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214841", "resource": "Reactome", "description": "PKMTs methylate histone lysines" }, { "id": "R-SSC-8943724", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8943724", "resource": "Reactome", "description": "Regulation of PTEN gene transcription" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "histone H3K9 monomethyltransferase activity", "id": "GO:0140948", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140948", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "histone deacetylase complex", "id": "GO:0000118", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000118", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "negative regulation of programmed cell death", "id": "GO:0043069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043069", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "negative regulation of JNK cascade", "id": "GO:0046329", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046329", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" }, { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR92", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 452, "end_pos": 454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 471, "end_pos": 473, "annotation": "n_glycosylation_sequon" }, { "start_pos": 747, "end_pos": 749, "annotation": "n_glycosylation_sequon" }, { "start_pos": 816, "end_pos": 818, "annotation": "n_glycosylation_sequon" }, { "start_pos": 855, "end_pos": 857, "annotation": "n_glycosylation_sequon" }, { "start_pos": 869, "end_pos": 871, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-5634802", "name": "MECOM (KMT8E), PRDM16 (KMT8F) methylate lysine-10 of replicative histone H3 (H3K9)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5634802", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5634802" } ] }, { "id": "R-SSC-8943817", "name": "MECOM (EVI1) recruits polycomb repressor complexes (PRCs) to the PTEN gene promoter", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8943817", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8943817" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AR92-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1051, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AR92-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AR92" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AR92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AR92" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 49, "start_aa": "Tyr", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 260, 576 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 270, "end_pos": 272 }, { "start_pos": 334, "end_pos": 336 }, { "start_pos": 452, "end_pos": 454 }, { "start_pos": 471, "end_pos": 473 }, { "start_pos": 747, "end_pos": 749 }, { "start_pos": 816, "end_pos": 818 }, { "start_pos": 855, "end_pos": 857 }, { "start_pos": 869, "end_pos": 871 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AQX6-1", "uniprot_ac": "A0A287AQX6", "uniprot_id": "A0A287AQX6_PIG", "mass": { "chemical_mass": 27539.0, "monoisotopic_mass": 27539.0 }, "refseq": {}, "gene_names": [ { "name": "MLX", "type": "recommended", "evidence": [ { "id": "A0A287AQX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ] } ], "protein_names": [ { "name": "Max-like protein X", "type": "recommended", "evidence": [ { "id": "A0A287AQX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6/entry#names_and_taxonomy" } ] }, { "name": "Max-like bHLHZip protein", "type": "synonym", "evidence": [ { "id": "A0A287AQX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6/entry#names_and_taxonomy" } ] }, { "name": "Protein BigMax", "type": "synonym", "evidence": [ { "id": "A0A287AQX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6/entry#names_and_taxonomy" } ] }, { "name": "Transcription factor-like protein 4", "type": "synonym", "evidence": [ { "id": "A0A287AQX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MAD1, MAD4, MNT, WBSCR14 and MLXIP which recognizes the core sequence 5'-CACGTG-3'. The TCFL4-MAD1, TCFL4-MAD4, TCFL4-WBSCR14 complexes are transcriptional repressors. Plays a role in transcriptional activation of glycolytic target genes. Involved in glucose-responsive gene regulation.", "evidence": [ { "database": "UniProtKB", "id": "F1S1D8", "url": "https://www.uniprot.org/uniprotkb/F1S1D8#function" }, { "database": "UniProtKB", "id": "ARBA00053727", "url": "https://www.uniprot.org/uniprotkb/ARBA00053727#function" }, { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6#function" }, { "database": "UniProtKB", "id": "A0A5G2QQQ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQQ6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MLX", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6", "locus": { "chromosome": "12", "start_pos": 20249761, "end_pos": 20257526, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017397", "url": "https://www.ensembl.org/id/ENSSSCG00000017397" } ] } } ], "crossref": [ { "id": "A0A287AQX6", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AQX6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017397", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017397", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19687", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19687", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519270", "url": "https://www.ncbi.nlm.nih.gov/gene/100519270", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052207", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052207", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519270", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519270", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QQQ6", "url": "https://www.orthodb.org/?gene=A0A5G2QQQ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1S1D8", "url": "https://www.orthodb.org/?gene=F1S1D8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15741", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15741", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15741:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15741:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQQ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S1D8", "url": "https://www.uniprot.org/uniprotkb/F1S1D8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S1D8-1", "url": "https://www.uniprot.org/uniprotkb/F1S1D8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTEPGASPEDPWVKVEYAYSDNSLDPGIFVESTRKGSVVSRANSIGSTSASSVPNTDDEDSDYHQESYKESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTIVPTCQQQDFSIGSQKLSKAIVLQKTIDYIQFLHKEKKKQEEEVSTLRKDVMALKIMKVNYEQIVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQELSACVFSWIEEHCKPQTLRGSSRHSAMVNESD", "length": 242, "header": "tr|A0A287AQX6-1|A0A287AQX6_PIG Isoform 1 of Max-like protein X OS=Sus scrofa OX=9823 GN=MLX PE=4 SV=3 CANONICAL=A0A287AQX6-1" }, "isoforms": [ { "isoform_ac": "A0A287AQX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6/entry#A0A287AQX6-1", "sequence": { "sequence": "MTEPGASPEDPWVKVEYAYSDNSLDPGIFVESTRKGSVVSRANSIGSTSASSVPNTDDEDSDYHQESYKESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTIVPTCQQQDFSIGSQKLSKAIVLQKTIDYIQFLHKEKKKQEEEVSTLRKDVMALKIMKVNYEQIVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQELSACVFSWIEEHCKPQTLRGSSRHSAMVNESD", "length": 242, "header": "tr|A0A287AQX6-1|A0A287AQX6_PIG Isoform 1 of Max-like protein X OS=Sus scrofa OX=9823 GN=MLX PE=4 SV=3 CANONICAL=A0A287AQX6-1" }, "locus": { "chromosome": "12", "start_pos": 20257458, "end_pos": 20254078, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048064.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048064.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046453.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046453.3" } ] } }, { "isoform_ac": "A0A5G2QQQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6/entry#A0A5G2QQQ6-1", "sequence": { "sequence": "MTEPGASPEDPWVKVEYAYSDNSLDPDDEDSDYHQESYKESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTIVPTCQQQDFSIGSQKLSKAIVLQKTIDYIQFLHKEKKKQEEEVSTLRKDVMALKIMKVNYEQIVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQELSACVFSWIEEHCKPQTLREIVIGVLHQLKNQLY", "length": 214, "header": "tr|A0A5G2QQQ6-1|A0A287AQX6_PIG Computationally mapped isoform of Max-like protein X OS=Sus scrofa OX=9823 GN=MLX PE=4 SV=2 CANONICAL=A0A287AQX6-1" }, "locus": { "chromosome": "12", "start_pos": 20257458, "end_pos": 20250773, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070390.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070390.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067247.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067247.2" } ] } }, { "isoform_ac": "F1S1D8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6/entry#F1S1D8-1", "sequence": { "sequence": "MTEPGASPEDPWVKASPAGAHAGEGRAGRARARRGSGRRGDSLQSLALPPLSGPRGCREDSSHPACAKVEYAYSDNSLDPGIFVESTRKGSVVSRANSIGSTSASSVPNTDDEDSDYHQESYKESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTIVPTCQQQDFSIGSQKLSKAIVLQKTIDYIQFLHKEKKKQEEEVSTLRKDVMALKIMKVNYEQIVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQELSACVFSWIEEHCKPQTLREIVIGVLHQLKNQLY", "length": 298, "header": "tr|F1S1D8-1|A0A287AQX6_PIG Computationally mapped isoform of Max-like protein X OS=Sus scrofa OX=9823 GN=MLX PE=4 SV=2 CANONICAL=A0A287AQX6-1" }, "locus": { "chromosome": "12", "start_pos": 20257458, "end_pos": 20250773, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018937.3", "url": "https://www.ensembl.org/id/ENSSSCT00000018937.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018432.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018432.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQQ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQQ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519270", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519270", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" }, { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" }, { "name": "RNA polymerase II-specific DNA-binding transcription factor binding", "id": "GO:0061629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061629", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" }, { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX6", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 200, "end_pos": 202, "annotation": "n_glycosylation_sequon" }, { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AQX6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 242, "overlap": "1.0", "method": 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AWK2-1", "uniprot_ac": "A0A287AWK2", "uniprot_id": "A0A287AWK2_PIG", "mass": { "chemical_mass": 61164.0, "monoisotopic_mass": 61164.0 }, "refseq": {}, "gene_names": [ { "name": "SVOP", "type": "recommended", "evidence": [ { "id": "A0A287AWK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AWK2" } ] } ], "protein_names": [ { "name": "Synaptic vesicle 2-related protein", "type": "recommended", "evidence": [ { "id": "A0A287AWK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AWK2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AWK2", "url": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23511", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23511:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23511:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00083", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00083", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AWK2", "url": "https://www.uniprot.org/uniprotkb/A0A287AWK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWK2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGB1", "url": "https://www.uniprot.org/uniprotkb/F1RGB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGB1-1", "url": "https://www.uniprot.org/uniprotkb/F1RGB1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPISDFLYQAAIMTRFALSSRVVKFRRTGESARSEDDTASGEHEVHIEGVRAGLEAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLLLSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAEIRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGLQESSHREWGQEMVGRGAHGTGVARSNSGSQE", "length": 551, "header": "tr|A0A287AWK2-1|A0A287AWK2_PIG Isoform 1 of Synaptic vesicle 2-related protein OS=Sus scrofa OX=9823 GN=SVOP PE=1 SV=1 CANONICAL=A0A287AWK2-1" }, "isoforms": [ { "isoform_ac": "A0A287AWK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWK2/entry#A0A287AWK2-1", "sequence": { "sequence": "MPISDFLYQAAIMTRFALSSRVVKFRRTGESARSEDDTASGEHEVHIEGVRAGLEAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLLLSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAEIRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGLQESSHREWGQEMVGRGAHGTGVARSNSGSQE", "length": 551, "header": "tr|A0A287AWK2-1|A0A287AWK2_PIG Isoform 1 of Synaptic vesicle 2-related protein OS=Sus scrofa OX=9823 GN=SVOP PE=1 SV=1 CANONICAL=A0A287AWK2-1" }, "locus": { "chromosome": "14", "start_pos": 41925095, "end_pos": 41845205, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043236.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043236.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048514.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048514.1" } ] } }, { "isoform_ac": "F1RGB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWK2/entry#F1RGB1-1", "sequence": { "sequence": "MWAPNAIMTRFALSSRVVKFRRTGESARSEDDTASGEHEVHIEGVRAGLEAVELDDGAAVPKEFANPTDGEGMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLLLSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAEMSAAVISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGLQESSHREWGQEMVGRGAHGTGVARSNSGSQE", "length": 527, "header": "tr|F1RGB1-1|A0A287AWK2_PIG Computationally mapped isoform of Synaptic vesicle 2-related protein OS=Sus scrofa OX=9823 GN=SVOP PE=1 SV=3 CANONICAL=A0A287AWK2-1" }, "locus": { "chromosome": "14", "start_pos": 41925095, "end_pos": 41849566, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010893.3", "url": "https://www.ensembl.org/id/ENSSSCT00000010893.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010608.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010608.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGB1", "url": "https://www.uniprot.org/uniprotkb/F1RGB1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NXA5-1", "protein_name": "Synaptic vesicle 2-related protein", "gene_name": "SVOP", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEDDLFQLRQLPVVKFRRTGESSRSEEDAISGEHEIQIEGVRTELEAIELEDGAAVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSVITGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSGFAPIYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVLVMPTLGWRWLLILSALPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEFFQAGDVCSISSRRKEVKAKCSLTCEYLTEEDYTDLLWTTLSEFPGVLVTLWIIDRIGRKKTMALSFFVFSFCSLLLFLCVGRNVLTVLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAAVASFFLPIETKGRGLQESSHREWGQEMVGRGSHSPGVTRSNSGSQE", "length": 548 }, "evidence": [ { "id": "A0A287AWK2", "url": "https://omabrowser.org/oma/group/A0A287AWK2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8C2LZY3-1", "protein_name": "Synaptic vesicle 2-related protein", "gene_name": "Svop", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEEDLFQLRQLPVVKFRRTGESARSEDDLASGEHDVQIEGVRVGLEAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGVLSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLMLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDICSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNMLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAAVASCFLPIETKGRGLQESSHREWGQEMVGRGTNSEGVPRSNSGSQE", "length": 548 }, "evidence": [ { "id": "A0A287AWK2", "url": "https://omabrowser.org/oma/group/A0A287AWK2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q1JP63-1", "protein_name": "Synaptic vesicle 2-related protein", "gene_name": "SVOP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEEDLFQLRQLPVVKFRRTGESARSEDDTASGEHEVQIEGVRAGLEAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGLQESSHREWGQEMVGRGAHGTGVARSNSGSQE", "length": 548 }, "evidence": [ { "id": "A0A287AWK2", "url": "https://omabrowser.org/oma/group/A0A287AWK2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BFT9-1", "protein_name": "Synaptic vesicle 2-related protein", "gene_name": "Svop", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEDLFQLRQLPVVKFRRTGESARSEDDAASGEHDIQIEGVRVGLEAIELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAGVASCFLPIETKGRALQESSHREWGQEMVGRGTNSAGVPRSDSGSQE", "length": 548 }, "evidence": [ { "id": "A0A287AWK2", "url": "https://omabrowser.org/oma/group/A0A287AWK2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N4V2-1", "protein_name": "Synaptic vesicle 2-related protein", "gene_name": "SVOP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDLFQLRQLPVVKFRRTGESARSEDDTASGEHEVQIEGVHVGLEAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGLQESSHREWGQEMVGRGMHGAGVTRSNSGSQE", "length": 548 }, "evidence": [ { "id": "A0A287AWK2", "url": "https://omabrowser.org/oma/group/A0A287AWK2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q940M4-1", "protein_name": "Organic cation/carnitine transporter 7", "gene_name": "OCT7", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADGNTRFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKEPGFSLLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVNYRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISASKEPPSASV", "length": 500 }, "evidence": [ { "id": "A0A287AWK2", "url": "https://omabrowser.org/oma/group/A0A287AWK2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9Z2I7-1", "protein_name": "Synaptic vesicle 2-related protein", "gene_name": "Svop", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEEDLFQLRQLPVVKFRRTGESARSEDDAASGEHDVQIEGVRVGLEAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRALQESSHREWGQEMVGRGTNSTGVPRSNSGSQE", "length": 548 }, "evidence": [ { "id": "A0A287AWK2", "url": "https://omabrowser.org/oma/group/A0A287AWK2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWK2", "url": "https://www.uniprot.org/uniprotkb/A0A287AWK2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "synaptic vesicle membrane", "id": "GO:0030672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030672", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWK2", "url": "https://www.uniprot.org/uniprotkb/A0A287AWK2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AWK2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 551, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AWK2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AWK2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AWK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AWK2" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 95, "end_pos": 516, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 151, "end_pos": 153 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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"uniprot_canonical_ac": "A0A287AV19-1", "uniprot_ac": "A0A287AV19", "uniprot_id": "A0A287AV19_PIG", "mass": { "chemical_mass": 21640.0, "monoisotopic_mass": 21640.0 }, "refseq": { "ac": "XP_020919749", "name": "regulator of G-protein signaling 13 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919749" }, "gene_names": [ { "name": "RGS13", "type": "recommended", "evidence": [ { "id": "A0A287AV19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19" } ] }, { "name": "RGS13", "type": "synonym", "evidence": [ { "id": "XP_020919749", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919749" } ] } ], "protein_names": [ { "name": "Regulator of G protein signaling 13", "type": "synonym", "evidence": [ { "id": "A0A287AV19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19/entry#names_and_taxonomy" } ] }, { "name": "regulator of G-protein signaling 13 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020919749", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919749" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AV19", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RGS13", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19", "locus": { "chromosome": "10", "start_pos": 1057622, "end_pos": 1082222, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040300", "url": "https://www.ensembl.org/id/ENSSSCG00000040300" } ] } } ], "crossref": [ { "id": "A0A287AV19", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AV19", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040300", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040300", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106505070", "url": "https://www.ncbi.nlm.nih.gov/gene/106505070", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016137", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016137", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024066", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024066", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10845", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10845", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10845:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10845:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00615", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00615", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-416476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020919749", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919749", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZUM6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZUM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUM6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AV19", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AV19-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTYIAGESLELTKLHLNAQVQEKMNRRNCWICKMCRAVSKRPPSNLTLEEVLQWAQSFEKLMATKYGPVVYAAYLKMEHSDENIKFWMACETYKKIASRWSRTSRAKKLYKIYIQPESPREINIDSSTRETIIKNIREPTPTCFEEAQKIVYMHMERDSYPRFLKSEMYQKLLKTIQPNHNS", "length": 182, "header": "tr|A0A287AV19-1|A0A287AV19_PIG Isoform 1 of Regulator of G protein signaling 13 OS=Sus scrofa OX=9823 GN=RGS13 PE=4 SV=1 CANONICAL=A0A287AV19-1" }, "isoforms": [ { "isoform_ac": "A0A286ZUM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19/entry#A0A286ZUM6-1", "sequence": { "sequence": "MQGRQQRAEELMSGTVKGERQEAVSGELESHAVGKNDGPVVYAAYLKMEHSDENIKFWMACETYKKIASRWSRTSRAKKLYKIYIQPESPREINIDSSTRETIIKNIREPTPTCFEEAQKIVYMHMERDSYPRFLKSEMYQKLLKTIQPNHNS", "length": 153, "header": "tr|A0A286ZUM6-1|A0A287AV19_PIG Computationally mapped isoform of Regulator of G protein signaling 13 OS=Sus scrofa OX=9823 GN=RGS13 PE=4 SV=2 CANONICAL=A0A287AV19-1" }, "locus": { "chromosome": "10", "start_pos": 1072309, "end_pos": 1058789, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059364.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059364.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035191.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035191.2" } ] } }, { "isoform_ac": "A0A287AV19-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19/entry#A0A287AV19-1", "sequence": { "sequence": "MTYIAGESLELTKLHLNAQVQEKMNRRNCWICKMCRAVSKRPPSNLTLEEVLQWAQSFEKLMATKYGPVVYAAYLKMEHSDENIKFWMACETYKKIASRWSRTSRAKKLYKIYIQPESPREINIDSSTRETIIKNIREPTPTCFEEAQKIVYMHMERDSYPRFLKSEMYQKLLKTIQPNHNS", "length": 182, "header": "tr|A0A287AV19-1|A0A287AV19_PIG Isoform 1 of Regulator of G protein signaling 13 OS=Sus scrofa OX=9823 GN=RGS13 PE=4 SV=1 CANONICAL=A0A287AV19-1" }, "locus": { "chromosome": "10", "start_pos": 1076794, "end_pos": 1058789, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041720.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041720.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047956.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047956.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZUM6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUM6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-416476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "resource": "Reactome", "description": "G alpha (q) signalling events" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of signal transduction", "id": "GO:0009968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009968", "evidence": [ { "database": "UniProtKB", "id": "A0A287AV19", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19" } ], "pmid": "" }, { "name": "negative regulation of G protein-coupled receptor signaling pathway", "id": "GO:0045744", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045744", "evidence": [ { "database": "UniProtKB", "id": "A0A287AV19", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A287AV19", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AV19", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AV19", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19" } ], "pmid": "" }, { "name": "cytoplasmic side of plasma membrane", "id": "GO:0009898", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009898", "evidence": [ { "database": "UniProtKB", "id": "A0A287AV19", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AV19-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 182, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AV19-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AV19" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AV19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AV19" }, { "id": "PS50132", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50132" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RGS", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 173, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 45, "end_pos": 47 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ARH1-1", "uniprot_ac": "A0A287ARH1", "uniprot_id": "A0A287ARH1_PIG", "mass": { "chemical_mass": 95969.0, "monoisotopic_mass": 95969.0 }, "refseq": {}, "gene_names": [ { "name": "KANSL3", "type": "recommended", "evidence": [ { "id": "A0A287ARH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1" } ] } ], "protein_names": [ { "name": "KAT8 regulatory NSL complex subunit 3", "type": "recommended", "evidence": [ { "id": "A0A287ARH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1/entry#names_and_taxonomy" } ] }, { "name": "NSL complex protein NSL3", "type": "synonym", "evidence": [ { "id": "A0A287ARH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1/entry#names_and_taxonomy" } ] }, { "name": "Non-specific lethal 3 homolog", "type": "synonym", "evidence": [ { "id": "A0A287ARH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ARH1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KANSL3", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1", "locus": { "chromosome": "3", "start_pos": 57005310, "end_pos": 56959110, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040434", "url": "https://www.ensembl.org/id/ENSSSCG00000040434" } ] } } ], "crossref": [ { "id": "A0A287ARH1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ARH1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040434", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040434", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026555", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026555", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13136", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13136", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13136:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13136:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF20408", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20408", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23154", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23154", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3214847", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214847", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZVV5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZVV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVV5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZY07", "url": "https://www.uniprot.org/uniprotkb/A0A286ZY07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZY07-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZY07-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMT6", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMT6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARH1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BB28", "url": "https://www.uniprot.org/uniprotkb/A0A287BB28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BB28-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BB28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBM8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBM8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBM8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2U4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2U4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2U4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2U4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFC5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAHRGGERDFQTSARRMGTSLLFQLVHERELDLVFLDHSYAKPWSAHPDASSARPTRMLFVTPRRQHESTIESDVPIDVETVTSTPVPLYDNQKARSVMNECERHVIFARTDADAPPPPEDWEEHVNRTGWTMAQNKLFNKILKALQSDRLARLANEGACNEPVLRRVAVDKCARRVRQALASVSWDTKLVQWLHTTLVETLSLPMLAAYLDALQTLKGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKVLEIHSHFPHKPIILIGWNTGALVACHVSVMDYVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVLTRTEGHVGSEPRDQDAEKKKKPRDMARRDLAFEVPERGSRPASPAAKLPASPSGSEDLSSVSSSPTSSPKTKVTTVASAQKSSQIGSTQLLKRHVQRTEAMLTHKQAQAQFAAFLKQNMLVRKALPPGTSSCLFVPISSEQTEESEKEDLRVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTAGGPCTPSSGGASEATGGKPITMTLGQASAGAKELTGLLTTTKSSASEGGVPASPASSVVSSSTAPSALHALQSRLVATSPGSSLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPVPQATSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAIHQLLTNGGLAKLASSLPGLAQISNQATGLKVPTTITLTLRGQPSRITTLSPMGSGAAPSEEPISQVLPSSSQRLPPAP", "length": 903, "header": "tr|A0A287ARH1-1|A0A287ARH1_PIG Isoform 1 of KAT8 regulatory NSL complex subunit 3 OS=Sus scrofa OX=9823 GN=KANSL3 PE=4 SV=2 CANONICAL=A0A287ARH1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZVV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1/entry#A0A286ZVV5-1", "sequence": { "sequence": "MEKNGRPCESDVPIDVETVTSTPVPLYDNQKARSVMNECERHVIFARTDADAPPPPEDWEEHVNRTGWTMAQNKLFNKILKALQSDRLARLANEGACNEPVLRRVAVDKCARRVRQALASVSWDTKLVQWLHTTLVETLSLPMLAAYLDALQTLKGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKVLEIHSHFPHKPIILIGWNTGALVACHVSVMDYVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVLTRTEGHVGSEPRDQDAEKKKKPRDMARRDLAFEVPERGSRPASPAAKLPASPSGSEDLSSVSSSPTSSPKTKVTTVASAQKSSQIGSTQLLKRHVQRTEAMLTHKQAQVPISSEQTEESEKEDLRVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTAGGPCTPSSGGASEATGGKPITMTLGQASAGAKELTGLLTTTKSSASEGGVPASPASSVVSSSTAPSALHALQSRLVATSPGSSLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPVPQATSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAIHQLLTNGGLAKLASSLPGLAQISNQATGLKVPTTITLTLRGQPSRITTLSPMGSGAAPSEEPISQVLPSSSQRLPPAP", "length": 814, "header": "tr|A0A286ZVV5-1|A0A287ARH1_PIG Computationally mapped isoform of KAT8 regulatory NSL complex subunit 3 OS=Sus scrofa OX=9823 GN=KANSL3 PE=4 SV=2 CANONICAL=A0A287ARH1-1" }, "locus": { "chromosome": "3", "start_pos": 57002854, "end_pos": 56962518, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044473.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044473.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035799.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035799.2" } ] } }, { "isoform_ac": "A0A286ZY07-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1/entry#A0A286ZY07-1", "sequence": { "sequence": "MLFVTPRRQHESTIESDVPIDVETVTSTPVPLYDNQKARSVMNECERHVIFARTDADAPPPPEDWEEHVNRTGWTMAQNKLFNKILKALQSDRLARLANEGACNEPVLRRVAVDKCARRVRQALASVSWDTKLVQWLHTTLVETLSLPMLAAYLDALQTLKGKEAGLFCSCNLPGQQLSPAVPPTFPDSLFIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKVLEIHSHFPHKPIILIGWNTGALVACHVSVMDYVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVLTRTEGHVGSEPRDQDAEKKKKPRDMARRDLAFEVPERGSRPASPAAKLPASPSGSEDLSSVSSSPTSSPKTKVTTVASAQKSSQIGSTQLLKRHVQRTEAMLTHKQAQVPISSEQTEESEKEDLRVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTAGGPCTPSSGGASEATGGKPITMTLGQASAGAKELTGLLTTTKSSASEGGVPASPASSVVSSSTAPSALHALQSRLVATSPGSSLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPVPQATSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAIHQLLTNGGLAKLASSLPGLAQISNQATGLKVPTTITLTLRGQPSRITTLSPMGSGAAPSEEPISQVLPSSSQRLPPAP", "length": 848, "header": "tr|A0A286ZY07-1|A0A287ARH1_PIG Computationally mapped isoform of KAT8 regulatory NSL complex subunit 3 OS=Sus scrofa OX=9823 GN=KANSL3 PE=4 SV=2 CANONICAL=A0A287ARH1-1" }, "locus": { "chromosome": "3", "start_pos": 57002854, "end_pos": 56960394, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060227.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060227.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036338.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036338.2" } ] } }, { "isoform_ac": "A0A287AMT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1/entry#A0A287AMT6-1", "sequence": { "sequence": "MSVSGTSSSLGPMQMPLPHRRTGRSMSTGRGSALQSFKGFSYRTGWTMAQNKLFNKILKALQSDRLARLANEGACNEPVLRRVAVDKCARRVRQALASVSWDTKLVQWLHTTLVETLSLPMLAAYLDALQTLKGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKVLEIHSHFPHKPIILIGWNTGALVACHVSVMDYVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVLTRTEGHVGSEPRDQDAEKKKKPRDMARRDLAFEVPERGSRPASPAAKLPASPSGSEDLSSVSSSPTSSPKTKVTTVASAQKSSQIGSTQLLKRHVQRTEAMLTHKQAQAQFAAFLKQNMLVRKALPPGTSSCLFVPISSEQTEESEKEDLRVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTAGGPCTPSSGGASEATGGKPITMTLGQASAGAKELTGLLTTTKSSASEGGVPASPASSVVSSSTAPSALHALQSRLVATSPGSSLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPVPQATSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAIHQLLTNGGLAKLASSLPGLAQISNQATGLKVPTTITLTLRGQPSRITTLSPMGSGAAPSEEPISQVLPSSSQRLPPAP", "length": 818, "header": "tr|A0A287AMT6-1|A0A287ARH1_PIG Computationally mapped isoform of KAT8 regulatory NSL complex subunit 3 OS=Sus scrofa OX=9823 GN=KANSL3 PE=4 SV=1 CANONICAL=A0A287ARH1-1" }, "locus": { "chromosome": "3", "start_pos": 57002854, "end_pos": 56964386, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046365.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046365.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045232.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045232.2" } ] } }, { "isoform_ac": "A0A287ARH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1/entry#A0A287ARH1-1", "sequence": { "sequence": "MAHRGGERDFQTSARRMGTSLLFQLVHERELDLVFLDHSYAKPWSAHPDASSARPTRMLFVTPRRQHESTIESDVPIDVETVTSTPVPLYDNQKARSVMNECERHVIFARTDADAPPPPEDWEEHVNRTGWTMAQNKLFNKILKALQSDRLARLANEGACNEPVLRRVAVDKCARRVRQALASVSWDTKLVQWLHTTLVETLSLPMLAAYLDALQTLKGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKVLEIHSHFPHKPIILIGWNTGALVACHVSVMDYVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVLTRTEGHVGSEPRDQDAEKKKKPRDMARRDLAFEVPERGSRPASPAAKLPASPSGSEDLSSVSSSPTSSPKTKVTTVASAQKSSQIGSTQLLKRHVQRTEAMLTHKQAQAQFAAFLKQNMLVRKALPPGTSSCLFVPISSEQTEESEKEDLRVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTAGGPCTPSSGGASEATGGKPITMTLGQASAGAKELTGLLTTTKSSASEGGVPASPASSVVSSSTAPSALHALQSRLVATSPGSSLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPVPQATSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAIHQLLTNGGLAKLASSLPGLAQISNQATGLKVPTTITLTLRGQPSRITTLSPMGSGAAPSEEPISQVLPSSSQRLPPAP", "length": 903, "header": "tr|A0A287ARH1-1|A0A287ARH1_PIG Isoform 1 of KAT8 regulatory NSL complex subunit 3 OS=Sus scrofa OX=9823 GN=KANSL3 PE=4 SV=2 CANONICAL=A0A287ARH1-1" }, "locus": { "chromosome": "3", "start_pos": 57002854, "end_pos": 56960221, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036714.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036714.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046680.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046680.2" } ] } }, { "isoform_ac": "A0A287BB28-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1/entry#A0A287BB28-1", "sequence": { "sequence": "MLFVTPRRQHESTIESDVPIDVETVTSTPVPLYDNQKARSVMNECERHVIFARTDADAPPPPEDWEEHVNRTGWTMAQNKLFNKILKALQSDRLARLANEGACNEPVLRRVAVDKCARRVRQALASVSWDTKLVQWLHTTLVETLSLPMLAAYLDALQTLKGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKVLEIHSHFPHKPIILIGWNTGALVACHVSVMDYVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVLTRTEGHVGSEPRDQDAEKKKKPRDMARRDLAFEVPERGSRPASPAAKLPASPSGSEDLSSVSSSPTSSPKTKVTTVASAQKSSQIGSTQLLKRHVQRTEAMLTHKQAQAQFAAFLKQNMLVRKALPPGTSSCLFVPISSEQTEESEKEDLRVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTAGGPCTPSSGGASEATGGKPITMTLGQASAGAKELTGLLTTTKSSASEGGVPASPASSVVSSSTAPSALHALQSRLVATSPGSSLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPVPQATSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAIHQLLTNGGLAKLASSLPGLAQISNQATGLKVPTTITLTLRGQPSRITTLSPMGSGAAPSEEPISQVLPSSSQRLPPAP", "length": 846, "header": "tr|A0A287BB28-1|A0A287BB28_PIG Computationally mapped isoform of KAT8 regulatory NSL complex subunit 3 OS=Sus scrofa OX=9823 GN=KANSL3 PE=4 SV=1 CANONICAL=A0A287ARH1-1" }, "locus": { "chromosome": "3", "start_pos": 57002854, "end_pos": 56960394, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054602.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054602.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053271.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053271.2" } ] } }, { "isoform_ac": "A0A5G2QBM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1/entry#A0A5G2QBM8-1", "sequence": { "sequence": "MLFVTPRRQHESTIESDVPIDVETVTSTPVPLYDNQKARSVMNECERHVIFARTDADAPPPPEDWEEHVNRTGWTMAQNKLFNKILKALQSDRLARLANEGACNEPVLRRVAVDKCARRVRQALASVSWDTKLVQWLHTTLVETLSLPMLAAYLDALQTLKGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKVLEIHSHFPHKPIILIGWNTGALVACHVSVMDYVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVLTRTEGHVGSEPRDQDAEKKKKPRDMARRDLAFEVPERGSRPASPAAKLPASPSGSEDLSSVSSSPTSSPKTKVTTVASAQKSSQIGSTQLLKRHVQRTEAMLTHKQAQEQTEESEKEDLRVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTAGGPCTPSSGGASEATGGKPITMTLGQASAGAKELTGLLTTTKSSASEGGVPASPASSVVSSSTAPSALHALQSRLVATSPGSSLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPVPQATSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAIHQLLTNGGLAKLASSLPGLAQISNQATGLKVPTTITLTLRGQPSRITTLSPMGSGAAPSEEPISQVLPSSSQRLPPAP", "length": 815, "header": "tr|A0A5G2QBM8-1|A0A287ARH1_PIG Computationally mapped isoform of KAT8 regulatory NSL complex subunit 3 OS=Sus scrofa OX=9823 GN=KANSL3 PE=4 SV=1 CANONICAL=A0A287ARH1-1" }, "locus": { "chromosome": "3", "start_pos": 57002854, "end_pos": 56960394, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086167.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086167.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060898.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060898.1" } ] } }, { "isoform_ac": "A0A5G2R2U4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1/entry#A0A5G2R2U4-1", "sequence": { "sequence": "MLFVTPRRQHESTIESDVPIDVETVTSTPVPLYDNQKARSVMNECERHVIFARTDADAPPPPEDWEEHVNRTGWTMAQNKLFNKILKALQSDRLARLANEGACNEPVLRRVAVDKCARRVRQALASVSWDTKLVQWLHTTLVETLSLPMLAAYLDALQTLKGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKVLEIHSHFPHKPIILIGWNTGALVACHVSVMDYVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVLTRTEGHVGSEPRDQDAEKKKKPRDMARRDLAFEVPERGSRPASPAAKLPASPSGSEDLSSVSSSPTSSPKTKVTTVASAQKSSQIGSTQLLKRHVQRTEAMLTHKQAQGQVLLKGESQPAQRPQWFPAALRPVPCMHSRAALWPPLLAAPSQATSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAIHQLLTNGGLAKLASSLPGLAQISNQATGLKVPTTITLTLRGQPSRITTLSPMGSGAAPSEEPISQVLPSSSQRLPPAP", "length": 691, "header": "tr|A0A5G2R2U4-1|A0A287ARH1_PIG Computationally mapped isoform of KAT8 regulatory NSL complex subunit 3 OS=Sus scrofa OX=9823 GN=KANSL3 PE=4 SV=1 CANONICAL=A0A287ARH1-1" }, "locus": { "chromosome": "3", "start_pos": 57002854, "end_pos": 56960394, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071102.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071102.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070662.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070662.1" } ] } }, { "isoform_ac": "A0A5G2RFC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1/entry#A0A5G2RFC5-1", "sequence": { "sequence": "MVPGRICQPLSHDRNSSQRAETYESDVPIDVETVTSTPVPLYDNQKARSVMNECERHVIFARTDADAPPPPEDWEEHVNRTGWTMAQNKLFNKILKALQSDRLARLANEGACNEPVLRRVAVDKCARRVRQALASVSWDTKLVQWLHTTLVETLSLPMLAAYLDALQTLKGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKVLEIHSHFPHKPIILIGWNTGALVACHVSVMDYVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVLTRTEGHVGSEPRDQDAEKKKKPRDMARRDLAFEVPERGSRPASPAAKLPASPSGSEDLSSVSSSPTSSPKTKVTTVASAQKSSQIGSTQLLKRHVQRTEAMLTHKQAQVPISSEQTEESEKEDLRVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTAGGPCTPSSGGASEATGGKPITMTLGQASAGAKELTGLLTTTKSSASEGGVPASPASSVVSSSTAPSALHALQSRLVATSPGSSLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPVPQATSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAIHQLLTNGGLAKLASSLPGLAQISNQATGLKVPTTITLTLRGQPSRITTLSPMGSGAAPSEEPISQVLPSSSQVSLPGKPEDTGFDTGKRGAG", "length": 843, "header": "tr|A0A5G2RFC5-1|A0A287ARH1_PIG Computationally mapped isoform of KAT8 regulatory NSL complex subunit 3 OS=Sus scrofa OX=9823 GN=KANSL3 PE=4 SV=1 CANONICAL=A0A287ARH1-1" }, "locus": { "chromosome": "3", "start_pos": 56995436, "end_pos": 56964009, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086744.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086744.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073482.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073482.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 817, "start_aa": "Thr", "end_pos": 817, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr817", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBM8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBM8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3214847", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214847", "resource": "Reactome", "description": "HATs acetylate histones" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARH1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARH1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARH1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1" } ], "pmid": "" }, { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARH1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1" } ], "pmid": "" }, { "name": "NSL complex", "id": "GO:0044545", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044545", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARH1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARH1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARH1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARH1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1" } ], "pmid": "" }, { "name": "regulation of mitochondrial transcription", "id": "GO:1903108", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903108", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARH1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 314, "end_pos": 316, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ARH1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 903, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ARH1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ARH1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ARH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1" }, { "id": "PF20408", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20408" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KANL3/Tex30 alpha/beta hydrolase-like", "eco_id": "ECO_0000259", "start_pos": 332, "end_pos": 450, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287ARH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH1" }, { "id": "PF23154", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23154" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KANSL3 helical", "eco_id": "ECO_0000259", "start_pos": 133, "end_pos": 234, "start_aa": "Met", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 817 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 127, "end_pos": 129 }, { "start_pos": 314, "end_pos": 316 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": 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"categories": [ "Protein Classification" ] }, { "id": "PF14799", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14799", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZY27", "url": "https://www.uniprot.org/uniprotkb/A0A286ZY27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZY27-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZY27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWN1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RPRGSRSGVPGPDAPAMTSSPVSRVVYNGKRNSSPRSPPSSSEIFTPAHEENVRFIYEAWQGVERDLRSQLSGGERGLVEEYVEKVPNPSLKTFKPIDLSDLKRRNTQDTKKS", "length": 113, "header": "tr|A0A287AWN1-1|A0A287AWN1_PIG Isoform 1 of MAPK regulated corepressor interacting protein 1 OS=Sus scrofa OX=9823 GN=MCRIP1 PE=3 SV=2 CANONICAL=A0A287AWN1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZY27-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN1/entry#A0A286ZY27-1", "sequence": { "sequence": "MTSSPVSRVVYNGKRNSSPRSPPSSSEIFTPAHEENVRFIYEAFKPIDLSDLKRRNTQDTKKS", "length": 63, "header": "tr|A0A286ZY27-1|A0A287AWN1_PIG Computationally mapped isoform of MAPK regulated corepressor interacting protein 1 OS=Sus scrofa OX=9823 GN=MCRIP1 PE=3 SV=1 CANONICAL=A0A287AWN1-1" }, "locus": { "chromosome": "12", "start_pos": 1143836, "end_pos": 1142930, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048007.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048007.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036358.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036358.2" } ] } }, { "isoform_ac": "A0A287AWN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN1/entry#A0A287AWN1-1", "sequence": { "sequence": "RPRGSRSGVPGPDAPAMTSSPVSRVVYNGKRNSSPRSPPSSSEIFTPAHEENVRFIYEAWQGVERDLRSQLSGGERGLVEEYVEKVPNPSLKTFKPIDLSDLKRRNTQDTKKS", "length": 113, "header": "tr|A0A287AWN1-1|A0A287AWN1_PIG Isoform 1 of MAPK regulated corepressor interacting protein 1 OS=Sus scrofa OX=9823 GN=MCRIP1 PE=3 SV=2 CANONICAL=A0A287AWN1-1" }, "locus": { "chromosome": "12", "start_pos": 1143836, "end_pos": 1142882, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045666.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045666.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048277.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048277.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., 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"Protein Classification" ] }, { "id": "PTHR48051:SF64", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051:SF64", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020941889", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941889", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A072", "url": "https://www.uniprot.org/uniprotkb/A0A287A072", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A072-1", "url": 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"MAAVVAASLAAGGEEAAATTSVPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIVSNNKLGALPPDISALGSLRQLDVSSNELQSLPSELCSLPSLRDLNVRRNQLSTLPDELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDEFSELSFRISELAREPRGPRERREDGSADGDPEQIDFIDSHVPGEEEDRGAGEEQRPPESSPVAGDRERAPSSRREEPAGEERRRPDTLQLWQERERRQQQQQQQQSGVWGAPRKDSFLKLGVRAAGGGAAASSAQATYNSTPKPSAPQQGASGGQGAPAPTPASTCQEPLPVAEPATAPAPRPLGSIQRPNSFLFRSSSQSGSGPSSPDSVLRPRRSPQLLDEKEVMAQLRQVLESRLQRPLPEDLAEALASGVILCQLANQLRPRSVPFIHVPSPAVPKLSALKSRKNVESFLEACRKMGVPEADLCSPSDLLQGTAQGLWTTLEAVKRVGGRPPPPLWPPSGLGGFIFFYVVLMLLLCVVYTRLLGS", "length": 690, "header": "tr|A0A287AQY5-1|A0A287AQY5_PIG Isoform 1 of Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Sus scrofa OX=9823 GN=LRCH4 PE=4 SV=2 CANONICAL=A0A287AQY5-1" }, "isoforms": [ { "isoform_ac": "A0A287A072-1", "url": 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"end_pos": 8500418, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059144.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059144.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037127.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037127.3" } ] } }, { "isoform_ac": "A0A287AQY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY5/entry#A0A287AQY5-1", "sequence": { "sequence": "MAAVVAASLAAGGEEAAATTSVPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIVSNNKLGALPPDISALGSLRQLDVSSNELQSLPSELCSLPSLRDLNVRRNQLSTLPDELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDEFSELSFRISELAREPRGPRERREDGSADGDPEQIDFIDSHVPGEEEDRGAGEEQRPPESSPVAGDRERAPSSRREEPAGEERRRPDTLQLWQERERRQQQQQQQQSGVWGAPRKDSFLKLGVRAAGGGAAASSAQATYNSTPKPSAPQQGASGGQGAPAPTPASTCQEPLPVAEPATAPAPRPLGSIQRPNSFLFRSSSQSGSGPSSPDSVLRPRRSPQLLDEKEVMAQLRQVLESRLQRPLPEDLAEALASGVILCQLANQLRPRSVPFIHVPSPAVPKLSALKSRKNVESFLEACRKMGVPEADLCSPSDLLQGTAQGLWTTLEAVKRVGGRPPPPLWPPSGLGGFIFFYVVLMLLLCVVYTRLLGS", "length": 690, "header": "tr|A0A287AQY5-1|A0A287AQY5_PIG Isoform 1 of Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Sus scrofa OX=9823 GN=LRCH4 PE=4 SV=2 CANONICAL=A0A287AQY5-1" }, "locus": { "chromosome": "3", "start_pos": 8511214, "end_pos": 8500418, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044033.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044033.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046475.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046475.2" } ] } }, { "isoform_ac": "A0A287BT19-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY5/entry#A0A287BT19-1", "sequence": { "sequence": "MAAVVAASLAAGGEEAAATTSVPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIVSNNKLGALPPDISALGSLRQLDVSSNELQSLPSELCSLPSLRDLNVRRNQLSTLPDELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDEFSELSFRISELAREPRGPRERREDGSADGDPEQIDFIDSHVPGEEEDRGAGEEQRPPESSPVAGDRERAPSSRREEPAGEERRRPDTLQLWQERERRQQQQQQQQSGVWGAPRKDSFLKLGVRAAGGGAAASSAQATYNSTPKPSAPQQGASGGQGAPAPTPASTCQEPLPVAEPGPSSPDSVLRPRRSPQLLDEKEVMAQLRQVLESRLQRPLPEDLAEALASGVILCQLANQLRPRSVPFIHVPSPAVPKLSALKSRKNVESFLEACRKMGVPEADLCSPSDLLQGTAQGLWTTLEAVKRVGGRPPPPLWPPSGLGGFIFFYVVLMLLLCVVYTRLLGS", "length": 662, "header": "tr|A0A287BT19-1|A0A287BT19_PIG Computationally mapped isoform of Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Sus scrofa OX=9823 GN=LRCH4 PE=4 SV=2 CANONICAL=A0A287AQY5-1" }, "locus": { "chromosome": "3", "start_pos": 8511214, "end_pos": 8500418, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054258.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054258.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059347.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059347.2" } ] } }, { "isoform_ac": "F1RMY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY5/entry#F1RMY1-1", "sequence": { "sequence": "ALARSPLPREHSGENQLKPLGLSRVARSTNLPTPQRRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIVSNNKLGALPPDISALGSLRQLDVSSNELQSLPSELCSLPSLRDLNVRRNQLSTLPDELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDEFSELSFRISELAREPRGPRERREDGSADGDPEQIDFIDSHVPGEEEDRGAGEEQRPPESSPVAGDRERAPSSRREEPAGEERRRPDTLQLWQERERRQQQQQQQQSGVWGAPRKDSFLKLGVRAAGGGAAASSAQATYNSTPKPSAPQQGASGGQGAPAPTPASTCQEPLPVAEPATAPAPRPLGSIQRPNSFLFRSSSQSGSGPSSPDSVLRPRRSPQLLDEKEVMAQLRQVLESRLQRPLPEDLAEALASGVILCQLANQLRPRSVPFIHVPSPAVPKLSALKSRKNVESFLEACRKMGVPEESLCQPHHILEEEGAPGRGLPYIAAVVHALLERP", "length": 617, "header": "tr|F1RMY1-1|A0A287AQY5_PIG Computationally mapped isoform of Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Sus scrofa OX=9823 GN=LRCH4 PE=4 SV=4 CANONICAL=A0A287AQY5-1" }, "locus": { "chromosome": "3", "start_pos": 8509896, "end_pos": 8499545, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008407.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008407.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008188.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008188.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 482, "start_aa": "Thr", "end_pos": 482, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr482", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMY1", "url": "https://www.uniprot.org/uniprotkb/F1RMY1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY5" } ], "pmid": "" }, { "name": "PML body", "id": "GO:0016605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016605", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of toll-like receptor signaling pathway", "id": "GO:0034123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034123", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY5" } ], "pmid": "" }, { "name": "membrane raft assembly", "id": "GO:0001765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001765", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" }, { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" }, { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AQY5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 690, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AQY5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AQY5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AQY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY5" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 541, "end_pos": 654, "start_aa": "Leu", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 482 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 112, "end_pos": 114 }, { "start_pos": 120, "end_pos": 122 }, { "start_pos": 316, "end_pos": 318 }, { "start_pos": 460, "end_pos": 462 }, { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ARH4-1", "uniprot_ac": "A0A287ARH4", "uniprot_id": "A0A287ARH4_PIG", "mass": { "chemical_mass": 113597.0, "monoisotopic_mass": 113597.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "E3 ubiquitin-protein ligase RNF213", "type": "recommended", "evidence": [ { "id": "A0A287ARH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ARH4", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH4", "locus": {} } ], "crossref": [ { "id": "A0A287ARH4", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ARH4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017146", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017146", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR031248", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031248", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22605", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22605", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22605:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22605:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A287A0R7", "url": "https://www.uniprot.org/uniprotkb/A0A287A0R7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A0R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0R7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A1Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287A1Y8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A1Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1Y8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARH4", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZA4", "url": "https://www.uniprot.org/uniprotkb/F1RZA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZA4-1", "url": "https://www.uniprot.org/uniprotkb/F1RZA4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPA3", "url": "https://www.uniprot.org/uniprotkb/I3LPA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPA3-1", "url": "https://www.uniprot.org/uniprotkb/I3LPA3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRCPSCQHLSKDVVAKFCSQCGHKLLPAAPGAASENKLTAPSAPEGGAECGRELMDSSPFSSLGPGNGQENPDEHCSDASLQIQRGAASEGFMDAADGTSHELEAASPSASKRRKEDAALTKVSDVSSPDPKQANGAAAEPAGPEKGPGKEVKDQTKETKQPRASVPASRDHRQETQTKDQTAVPGGKAGENEKASLKPKKEPKKPEGNNKNNAAAEKNAKEQRNERTGELSPKESPLSSEEGVTVCFHAIISKHFEFNPSQHQVFVRGGEEFGKPKWKRNVCEMYYTRDLHELGSLVEGSAVIARQHLDKPIPYKYVLQKGKGAVEYEFIYKPQQKESEPVNRCLQVKSSLLGSGDWHQYDDIICMNPPGAWQTFKDRFTDGTRKDLVKGKQTAAAIMLDSIFSILETWNAINLKSFFTQFQQFYSVIRVPMIYEGKAQPWSTLEYEEKEVKKHLWECLTKKMEPFLKTSGDPLPKDCPVRSKLRMGLIILFSVEKFHIHLSKSDLTSLCHLLCSDPSSPHELHSDLIHILEIKHSWRNSLVNLCQRCMDGEVDLWVCTLPVLHLCMEPSPPTKDAGVQPEDTWAALEGISFSEFREKKSDRKQLVQLMGKNRHLLSVDARLFRSWFSLLPLRTLVCYMRECSEYLSRFPSHILDCLLGTCYRLQELKGPLTNLETIKSILQMLLSLLDTYQHKMLEEPLIQSYLTVCLKLHETTCRITKDHTFYEMPALSAEIVCRIIILKPLVDSAGGQHSEAGEKNSVATVFQGTLAATRSWFQRVFQNRVFQTGVLSSNVRFTYPEEIKVKAPSAGDAVFPACRTGSRFPHGTQGHGHPGMGPMVPVLLARLQGRVRSSVELRVRFTGWERKAETDSGSRLKAARVERHLHVGDQKSAPEVERQGGLQETEPGEKEGQGRAKETRWVPAAGRGTSRGLEASRPLPSCSRVSSYALEVVKAVPLRVQGVGDTVEPTEMVFALDVSVSLVLRVGVVTPAWSTGLAPAASPTRPVSMTPSPFPILFPQRPKR", "length": 1024, "header": "tr|A0A287ARH4-1|A0A287ARH4_PIG Isoform 1 of E3 ubiquitin-protein ligase RNF213 OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A287ARH4-1" }, "isoforms": [ { "isoform_ac": "A0A287A0R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH4/entry#A0A287A0R7-1", "sequence": { "sequence": "MRCPSCQHLSKDVVAKFCSQCGHKLLPAAPGAASENKLTAPSAPEGGAECGRELMDSSPFSSLGPGNGQENPDEHCSDASLQIQRGAASEGFMDAADGTSHELEAASPSASKRRKEDAALTKVSDVSSPDPKQANGAAAEPAGPEKGPGKEVKDQTKETKQPRASVPASRDHRQETQTKDQTAVPGGKAGENEKASLKPKKEPKKPEGNNKNNAAAEKNAKEQRNERTGELSPKESPLSSEEGVTVCFHAIISKHFEFNPSQHQVFVRGGEEFGKPKWKRNVCEMYYTRDLHELGSLVEGSAVIARQHLDKPIPYKYVLQKGKGAVEYEFIYKPQQKESEPVNRCLQVKSSLLGSGDWHQYDDIICMNPPGAWQTFKDRFTDGTRKDLVKGKQTAAAIMLDSIFSILETWNAINLKSFFTQFQQFYSVIRVPMIYEGKAQPWSTLEYEEKEVKKHLWECLTKKMEPFLKTSGDPLPKDCPVRSKLRMGLIILFSVEKFHIHLSKSDLTSLCHLLCSDPSSPHELHSDLIHILEIKHSWRNSLVNLCQRCMDGEVDLWVCTLPVLHLCMEPSPPTKDAGVQPEDTWAALEGISFSEFREKKSDRKQLVQLMGKNRHLLSVDARLFRSWFSLLPLRTLVCYMRECSEYLSRFPSHILDCLLGTCYRLQELKGPLTNLEVGRLPSAPESWLSRSRPPAGQSQLGGAFSENLTIKSILQMLLSLLDTYQHKMLEEPLIQSYLTVCLKLHETTCRITKDHTFYEMPALSAEIVCRIIILKPLVDSAGGQHSEAGEKNSVATVFQGTLAATRSWFQRVFQNRVFQTGVLSSNVRFTYPEEIKIWRRLVEIHFPVELGWKETLLGDMEGRLKQERPLSQIFAFSSTTWDAEGAEDSVSKCFEKCAIEAVSLVCQSQTSLLEKLSYKDLWKCGTLVSAVITKSWPRSRGQVVHDLGEVLKHLLTWPDIKQLFHLWGTPYILEQF", "length": 976, "header": "tr|A0A287A0R7-1|A0A287ARH4_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase RNF213 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A287ARH4-1" }, "locus": { "chromosome": "12", "start_pos": 2209766, "end_pos": 2160537, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048595.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048595.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037345.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037345.2" } ] } }, { "isoform_ac": "A0A287A1Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH4/entry#A0A287A1Y8-1", "sequence": { "sequence": "MRCPSCQHLSKDVVAKFCSQCGHKLLPAAPGAASENKLTAPSAPEGGAECGRELMDSSPFSSLGPGNGQENPDEHCSDASLQIQRGAASEGFMDAADGTSHELEAASPSASKRRKEDAALTKVSDVSSPDPKQANGAAAEPAGPEKGPGKEVKDQTKETKQPRASVPASRDHRQETQTKDQTAVPGGKAGENEKASLKPKKEPKKPEGNNKNNAAAEKNAKEQRNERTGELSPKESPLSSEEGVTVCFHAIISKHFEFNPSQHQVFVRGGEEFGKPKWKRNVCEMYYTRDLHELGSLVEGSAVIARQHLDKPIPYKYVLQKGKGAVEYEFIYKPQQKESEPVNRCLQVKSSLLGSGDWHQYDDIICMNPPGAWQTFKDRFTDGTRKDLVKGKQTAAAIMLDSIFSILETWNAINLKSFFTQFQQFYSVIRVPMIYEGKAQPWSTLEYEEKEVKKHLWECLTKKMEPFLKTSGDPLPKDCPVRSKLRMGLIILFSVEKFHIHLSKSDLTSLCHLLCSDPSSPHELHSDLIHILEIKHSWRNSLVNLCQRCMDGEVDLWVCTLPVLHLCMEPSPPTKDAGVQPEDTWAALEGISFSEFREKKSDRKQLVQLMGKNRHLLSVDARLFRSWFSLLPLRTLVCYMRECSEYLSRFPSHILDCLLGTCYRLQELKGPLTNLEVGRLPSAPESWLSRSRPPAGQSQLGGAFSENLTIKSILQMLLSLLDTYQHKMLEEPLIQSYLTVCLKLHETTCRITKDHTFYEMPALSAEIVCRIIILKPLVDSAGGQHSEAGEKNSVATVFQGTLAATRSWFQRVFQNRVFQTGVLSSNVRFTYPEEIKQGQGPNPQPHGS", "length": 848, "header": "tr|A0A287A1Y8-1|A0A287ARH4_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase RNF213 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A287ARH4-1" }, "locus": { "chromosome": "12", "start_pos": 2209766, "end_pos": 2168151, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038440.2", "url": "https://www.ensembl.org/id/ENSSSCT00000038440.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037947.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037947.2" } ] } }, { "isoform_ac": "A0A287ARH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH4/entry#A0A287ARH4-1", "sequence": { "sequence": "MRCPSCQHLSKDVVAKFCSQCGHKLLPAAPGAASENKLTAPSAPEGGAECGRELMDSSPFSSLGPGNGQENPDEHCSDASLQIQRGAASEGFMDAADGTSHELEAASPSASKRRKEDAALTKVSDVSSPDPKQANGAAAEPAGPEKGPGKEVKDQTKETKQPRASVPASRDHRQETQTKDQTAVPGGKAGENEKASLKPKKEPKKPEGNNKNNAAAEKNAKEQRNERTGELSPKESPLSSEEGVTVCFHAIISKHFEFNPSQHQVFVRGGEEFGKPKWKRNVCEMYYTRDLHELGSLVEGSAVIARQHLDKPIPYKYVLQKGKGAVEYEFIYKPQQKESEPVNRCLQVKSSLLGSGDWHQYDDIICMNPPGAWQTFKDRFTDGTRKDLVKGKQTAAAIMLDSIFSILETWNAINLKSFFTQFQQFYSVIRVPMIYEGKAQPWSTLEYEEKEVKKHLWECLTKKMEPFLKTSGDPLPKDCPVRSKLRMGLIILFSVEKFHIHLSKSDLTSLCHLLCSDPSSPHELHSDLIHILEIKHSWRNSLVNLCQRCMDGEVDLWVCTLPVLHLCMEPSPPTKDAGVQPEDTWAALEGISFSEFREKKSDRKQLVQLMGKNRHLLSVDARLFRSWFSLLPLRTLVCYMRECSEYLSRFPSHILDCLLGTCYRLQELKGPLTNLETIKSILQMLLSLLDTYQHKMLEEPLIQSYLTVCLKLHETTCRITKDHTFYEMPALSAEIVCRIIILKPLVDSAGGQHSEAGEKNSVATVFQGTLAATRSWFQRVFQNRVFQTGVLSSNVRFTYPEEIKVKAPSAGDAVFPACRTGSRFPHGTQGHGHPGMGPMVPVLLARLQGRVRSSVELRVRFTGWERKAETDSGSRLKAARVERHLHVGDQKSAPEVERQGGLQETEPGEKEGQGRAKETRWVPAAGRGTSRGLEASRPLPSCSRVSSYALEVVKAVPLRVQGVGDTVEPTEMVFALDVSVSLVLRVGVVTPAWSTGLAPAASPTRPVSMTPSPFPILFPQRPKR", "length": 1024, "header": "tr|A0A287ARH4-1|A0A287ARH4_PIG Isoform 1 of E3 ubiquitin-protein ligase RNF213 OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A287ARH4-1" }, "locus": { "chromosome": "12", "start_pos": 2209766, "end_pos": 2169133, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041462.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041462.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046669.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046669.2" } ] } }, { "isoform_ac": "F1RZA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH4/entry#F1RZA4-1", "sequence": { "sequence": "MRCPSCQHLSKDVVAKFCSQCGHKLLPAAPGAASENKLTAPSAPEGGAECGRELMDSSPFSSLGPGNGQENPDEHCSDASLQIQRGAASEGFMDAADGTSHELEAASPSASKRRKEDAALTKVSDVSSPDPKQANGAAAEPAGPEKGPGKEVKDQTKETKQPRASVPASRDHRQETQTKDQTAVPGGKAGENEKASLKPKKEPKKPEGNNKNNAAAEKNAKEQRNERTGELSPKESPLSSEEGVTVCFHAIISKHFEFNPSQHQVFVRGGEEFGKPKWKRNVCEMYYTRDLHELGSLVEGSAVIARQHLDKPIPYKYVLQKGKGAVEYEFIYKPQQKESEPVNRCLQVKSSLLGSGDWHQYDDIICMNPPGAWQTFKDRFTDGTRKDLVKGKQTAAAIMLDSIFSILETWNAINLKSFFTQFQQFYSVIRVPMIYEGKAQPWSTLEYEEKEVKKHLWECLTKKMEPFLKTSGDPLPKDCPVRSKLRMGLIILFSVEKFHIHLSKSDLTSLCHLLCSDPSSPHELHSDLIHILEIKHSWRNSLVNLCQRCMDGEVDLWVCTLPVLHLCMEPSPPTKDAGVQPEDTWAALEGISFSEFREKKSDRKQLVQLMGKNRHLLSVDARLFRSWFSLLPLRTLVCYMRECSEYLSRFPSHILDCLLGTCYRLQELKGPLTNLEVGRLPSAPESWLSRSRPPAGQSQLGGAFSENLTIKSILQMLLSLLDTYQHKMLEEPLIQSYLTVCLKLHETTCRITKDHTFYEMPALSAEIVCRIIILKPLVDSAGGQHSEAGEKNSVATVFQGTLAATRSWFQRVFQNRVFQTGVLSSNVRFTYPEEIKIWRRLVEIHFPVELGWKETLLGDMEGRLKQERPLSQIFAFSSTTWDAEGAEDSVSKCFEKCAIEAVSLVCQSQTSLLEKLSYKDLWKCGTLVSAVITKSWPRSRGQVVHDLGEVLKHLLTWPDIKQLFHLWGTFTEGAGLWPVVLSDPG", "length": 985, "header": "tr|F1RZA4-1|A0A287ARH4_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase RNF213 OS=Sus scrofa OX=9823 GN= PE=1 SV=4 CANONICAL=A0A287ARH4-1" }, "locus": { "chromosome": "12", "start_pos": 2209766, "end_pos": 2161242, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018668.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018668.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018167.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018167.4" } ] } }, { "isoform_ac": "I3LPA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH4/entry#I3LPA3-1", "sequence": { "sequence": "MRCPSCQHLSKDVVAKFCSQCGHKLLPAAPGAASENKLTAPSAPEGGAECGRELMDSSPFSSLGPGNGQENPDEHCSDASLQIQRGAASEGFMDAADGTSHELEAASPSASKRRKEDAALTKVSDVSSPDPKQANGAAAEPAGPEKGPGKEVKDQTKETKQPRASVPASRDHRQETQTKDQTAVPGGKAGENEKASLKPKKEPKKPEGNNKNNAAAEKNAKEQRNERTGELSPKESPLSSEEGVTVCFHAIISKHFEFNPSQHQVFVRGGEEFGKPKWKRNVCEMYYTRDLHELGSLVEGSAVIARQHLDKPIPYKYVLQKGKGAVEYEFIYKPQQKESEPVNRCLQVKSSLLGSGDWHQYDDIICMNPPGAWQTFKDRFTDGTRKDLVKGKQTAAAIMLDSIFSILETWNAINLKSFFTQFQQFYSVIRVPMIYEGKAQPWSTLEYEEKEVKKHLWECLTKKMEPFLKTSGDPLPKDCPVRSKLRMGLIILFSVEKFHIHLSKSDLTSLCHLLCSDPSSPHELHSDLIHILEIKHSWRNSLVNLCQRCMDGEVDLWVCTLPVLHLCMEPSPPTKDAGVQPEDTWAALEGISFSEFREKKSDRKQLVQLMGKNRHLLSVDARLFRSWFSLLPLRTLVCYMRECSEYLSRFPSHILDCLLGTCYRLQELKGPLTNLEVGRLPSAPESWLSRSRPPAGQSQLGGAFSENLTIKSILQMLLSLLDTYQHKMLEEPLIQSYLTVCLKLHETTCRITKDHTFYEMPALSAEIVCRIIILKPLVDSAGGQHSEAGEKNSVATVFQGTLAATRSWFQRVFQNRVFQTGVLSSNVRFTYPEEIKEEEEGPIFLMGE", "length": 848, "header": "tr|I3LPA3-1|A0A287ARH4_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase RNF213 OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A287ARH4-1" }, "locus": { "chromosome": "12", "start_pos": 2209766, "end_pos": 2165735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026345.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026345.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025929.2", "url": "https://www.ensembl.org/id/ENSSSCP00000025929.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LPA3", "url": "https://www.uniprot.org/uniprotkb/I3LPA3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARH4", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH4" } ], "pmid": "" }, { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARH4", "url": "https://www.uniprot.org/uniprotkb/A0A287ARH4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ARH4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1024, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ARH4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ARH4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AUQ6-1", "uniprot_ac": "A0A287AUQ6", "uniprot_id": "A0A287AUQ6_PIG", "mass": { "chemical_mass": 87088.0, "monoisotopic_mass": 87088.0 }, "refseq": { "ac": "XP_020946380", "name": "putative homeodomain transcription factor 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946380" }, "gene_names": [ { "name": "PHTF1", "type": "recommended", "evidence": [ { "id": "A0A287AUQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6" } ] }, { "name": "PHTF1", "type": "synonym", "evidence": [ { "id": "XP_020946380", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946380" } ] } ], "protein_names": [ { "name": "Putative homeodomain transcription factor 1", "type": "synonym", "evidence": [ { "id": "A0A287AUQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6/entry#names_and_taxonomy" } ] }, { "name": "putative homeodomain transcription factor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020946380", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946380" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AUQ6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PHTF1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6", "locus": { "chromosome": "4", "start_pos": 106876846, "end_pos": 106809391, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006766", "url": "https://www.ensembl.org/id/ENSSSCG00000006766" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006766", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006766", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154428", "url": "https://www.ncbi.nlm.nih.gov/gene/100154428", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154428", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154428", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KMWQTRE", "url": "https://omabrowser.org/oma/group/KMWQTRE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AUQ6", "url": "https://www.orthodb.org/?gene=A0A287AUQ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12680", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12680", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12680:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12680:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12129", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12129", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020946380", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946380", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A0W4", "url": "https://www.uniprot.org/uniprotkb/A0A287A0W4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A0W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0W4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUQ6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q6S2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6S2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q6S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6S2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBQ7", "url": "https://www.uniprot.org/uniprotkb/F1SBQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBQ7-1", "url": "https://www.uniprot.org/uniprotkb/F1SBQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBQ8", "url": "https://www.uniprot.org/uniprotkb/F1SBQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBQ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SBQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKADLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVLFPFFSTWWIQVTSLRIFVWLLLLYLMQVIALVLYFLMPIVNVSEVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNRRRRKLRKTANGDGSRENGNNSSDKARGIETLESAPFNGGFWGTLFGNRIKRVKLICNKGTETDNDSSCLHPVIKKRQCRPEFRMWQTREKAKFSDGEKGRRESFRHLGNGISDDLSSEEDGEARTQMMILRRSVEGASSDNGCEVKNRKSVLSRHLNTQVKKTTSKWCPIMRDSDSLAESEFESAAFSQGSRSGMSGGSRSLSMSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGARVNSLHSGTKRDPKEDVFQQNHLFWLQNSSPASDRVSAIIWEGSECKKMDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLAFFPFLHRLFREKSLDQLKTISAEEILTLFCGAPPVTPIIILSIINFFERLCLTWMFFFMMCVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSFLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQVLRGHKTFLNDVYNWEFLIWESALLLFLLRLVSLGSETNKKYSNVSILLTEQINLYLKMEKKPNKKEQLTLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAVSGVISDLLGFNIRLWKIKS", "length": 762, "header": "tr|A0A287AUQ6-1|A0A287AUQ6_PIG Isoform 1 of Putative homeodomain transcription factor 1 OS=Sus scrofa OX=9823 GN=PHTF1 PE=4 SV=1 CANONICAL=A0A287AUQ6-1" }, "isoforms": [ { "isoform_ac": "A0A287A0W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6/entry#A0A287A0W4-1", "sequence": { "sequence": "MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKADLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVLFPFFSTWWIQVTSLRIFVWLLLLYLMQVIALVLYFLMPIVNVSEVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNRRRRKLRKTANGDGSRENGNNSSDKARGIETLESAPFNGGFWGTLFGNRIKRVKLICNKGTETDNDSSCLHPVIKKRQCRPEFRMWQTREKAKFSDGEKGRRESFRHLGNGISDDLSSEEDGEARTQMMILRRSVEGASSDNGCEVKNRKSVLSRHLNTQVKKTTSKWCPIMRDSDSLAESEFESAAFSQGSRSGMSGGSRSLSMSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGARVNSLHSGTKRDPKEDVFQQNHLFWLQNSSPASDRVSAIIWEGSECKKMDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLAFFPFLHRLFREKSLDQLKTISAEEILTLFCGAPPVTPIIILSIINFFERLCLTWMFFFMMCVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSFLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQINLYLKMEKKPNKKEQLTLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAVSGVISDLLGFNIRVSVGLVGKDGWGGGREALARE", "length": 725, "header": "tr|A0A287A0W4-1|A0A287AUQ6_PIG Computationally mapped isoform of Putative homeodomain transcription factor 1 OS=Sus scrofa OX=9823 GN=PHTF1 PE=4 SV=3 CANONICAL=A0A287AUQ6-1" }, "locus": { "chromosome": "4", "start_pos": 106874755, "end_pos": 106810220, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049233.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049233.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037390.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037390.3" } ] } }, { "isoform_ac": "A0A287AUQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6/entry#A0A287AUQ6-1", "sequence": { "sequence": "MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKADLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVLFPFFSTWWIQVTSLRIFVWLLLLYLMQVIALVLYFLMPIVNVSEVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNRRRRKLRKTANGDGSRENGNNSSDKARGIETLESAPFNGGFWGTLFGNRIKRVKLICNKGTETDNDSSCLHPVIKKRQCRPEFRMWQTREKAKFSDGEKGRRESFRHLGNGISDDLSSEEDGEARTQMMILRRSVEGASSDNGCEVKNRKSVLSRHLNTQVKKTTSKWCPIMRDSDSLAESEFESAAFSQGSRSGMSGGSRSLSMSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGARVNSLHSGTKRDPKEDVFQQNHLFWLQNSSPASDRVSAIIWEGSECKKMDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLAFFPFLHRLFREKSLDQLKTISAEEILTLFCGAPPVTPIIILSIINFFERLCLTWMFFFMMCVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSFLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQVLRGHKTFLNDVYNWEFLIWESALLLFLLRLVSLGSETNKKYSNVSILLTEQINLYLKMEKKPNKKEQLTLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAVSGVISDLLGFNIRLWKIKS", "length": 762, "header": "tr|A0A287AUQ6-1|A0A287AUQ6_PIG Isoform 1 of Putative homeodomain transcription factor 1 OS=Sus scrofa OX=9823 GN=PHTF1 PE=4 SV=1 CANONICAL=A0A287AUQ6-1" }, "locus": { "chromosome": "4", "start_pos": 106875147, "end_pos": 106810220, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057803.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057803.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047846.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047846.1" } ] } }, { "isoform_ac": "A0A5G2Q6S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6/entry#A0A5G2Q6S2-1", "sequence": { "sequence": "MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKADLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVLFPFFSTWWIQVTSLRIFVWLLLLYLMQVIALVLYFLMPIVNVSEVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNRRRRKLRKTANGDGSRENGNNSSDKARGIETLESAPFNGGFWGTLFGNRIKRVKLICNKGTETDNDSSCLHPVIKKRQCRPEFRMWQTREKAKFSDGEKGRRESFRHLGNGISDDLSSEEDGEARTQMMILRRSVEGASSDNGCEVKNRKSVLSRHLNTQVKKTTSKWCPIMRDSDSLAESEFESAAFSQGSRSGMSGGSRSLSMSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGARVNSLHSGTKRDPKEDVFQQNHLFWLQNSSPASDRVSAIIWEGSECKKMDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLAFFPFLHRLFREKSLDQLKTISAEEILTLFCGAPPVTPIIILSIINFFERLCLTWMFFFMMCVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSFLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQVRASDLF", "length": 637, "header": "tr|A0A5G2Q6S2-1|A0A287AUQ6_PIG Computationally mapped isoform of Putative homeodomain transcription factor 1 OS=Sus scrofa OX=9823 GN=PHTF1 PE=4 SV=1 CANONICAL=A0A287AUQ6-1" }, "locus": { "chromosome": "4", "start_pos": 106859867, "end_pos": 106810220, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066881.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066881.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059713.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059713.1" } ] } }, { "isoform_ac": "F1SBQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6/entry#F1SBQ7-1", "sequence": { "sequence": "MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKADLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVLFPFFSTWWIQVTSLRIFVWLLLLYLMQVIALVLYFLMPIVNVSEVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNRRRRIKRVKLICNKGTETDNDSSCLHPVIKKRQCRPEFRMWQTREKAKFSDGEKGRRESFRHLGNGISDDLSSEEDGEARTQMMILRRSVEGASSDNGCEVKNRKSVLSRHLNTQVKKTTSKWCPIMRDSDSLAESEFESAAFSQGSRSGMSGGSRSLSMSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGARVNSLHSGTKRDPKEDVFQQNHLFWLQNSSPASDRVSAIIWEGSECKKMDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLAFFPFLHRLFREKSLDQLKTISAEEILTLFCGAPPVTPIIILSIINFFERLCLTWMFFFMMCVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSFLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQVLRGHKTFLNDVYNWEFLIWESALLLFLLRLVSLGSETNKKYSNVSILLTEQINLYLKMEKKPNKKEQLTLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAVSGVISDLLGFNIRLWKIKS", "length": 717, "header": "tr|F1SBQ7-1|A0A287AUQ6_PIG Computationally mapped isoform of Putative homeodomain transcription factor 1 OS=Sus scrofa OX=9823 GN=PHTF1 PE=4 SV=4 CANONICAL=A0A287AUQ6-1" }, "locus": { "chromosome": "4", "start_pos": 106875147, "end_pos": 106810220, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007413.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007413.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007218.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007218.4" } ] } }, { "isoform_ac": "F1SBQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6/entry#F1SBQ8-1", "sequence": { "sequence": "MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKADLIDVDLIRVIALVLYFLMPIVNVSEVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNRRRRKLRKTANGDGSRENGNNSSDKARGIETLESAPFNGGFWGTLFGNRIKRVKLICNKGTETDNDSSCLHPVIKKRQCRPEFRMWQTREKAKFSDGEKGRRESFRHLGNGISDDLSSEEDGEARTQMMILRRSVEGASSDNGCEVKNRKSVLSRHLNTQVKKTTSKWCPIMRDSDSLAESEFESAAFSQGSRSGMSGGSRSLSMSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGARVNSLHSGTKRDPKEDVFQQNHLFWLQNSSPASDRVSAIIWEGSECKKMDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLAFFPFLHRLFREKSLDQLKTISAEEILTLFCGAPPVTPIIILSIINFFERLCLTWMFFFMMCVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSFLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQVLRGHKTFLNDVYNWEFLIWESALLLFLLRLVSLGSETNKKYSNVSILLTEQINLYLKMEKKPNKKEQLTLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAVSGVISDLLGFNIRLWKIKS", "length": 709, "header": "tr|F1SBQ8-1|A0A287AUQ6_PIG Computationally mapped isoform of Putative homeodomain transcription factor 1 OS=Sus scrofa OX=9823 GN=PHTF1 PE=4 SV=2 CANONICAL=A0A287AUQ6-1" }, "locus": { "chromosome": "4", "start_pos": 106875147, "end_pos": 106810220, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007412.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007412.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007217.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007217.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6S2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6S2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154428", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154428", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1M8G0-1", "protein_name": "Protein PHTF1", "gene_name": "Phtf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKPDLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVFFPLFSSWWIQVTSLRIFVWLLLLYLMQVTAIVLYLMMPIVSVSEVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNRRRRKLRKTVNGDGTRDNGNNSPDKIRAVETLDSAPSVGGFWGTLFGNRIKRVKLVSNKGTETDNDSGCFHPIIKKRQGRPEIRMWQAREKAKVSDGEKCRREAYRRLGNGVSDDLSSEEDGEARTQMILLRRSVEGASSDNGCEVKNRKSILSRHLNSQVKKTATRWCHIVRDSDSLAESEFESAAFSQGSRSGMSGGSRSLNLSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGAHVNTLHSGTKRDPKEDVFQQNHLFWLQNSSPASERVSAIIWEGNECKKMDMSVLEISGIIMSRVNAYEQGVGYQMLGNAVTIGLALFPFLYRLFREKSFDQLKSISAEEVLTLFCGAPPVTPVVILSIINFFERLCLTWIFFFMMCVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQVLQGHKTFLNDAYNWEFLIWETALLLFLLRLASLGSETNKKYSNVSILLTEQINLYLKMEKKPNKKEQLTLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAVSGVISDLLGFNIRLWKIKS", "length": 762 }, "evidence": [ { "id": "A0A287AUQ6", "url": "https://omabrowser.org/oma/group/A0A287AUQ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HQI5-1", "protein_name": "Homeodomain transcription factor 1 isoform X1", "gene_name": "Phtf1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKSDLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVFFPLFSSWWIQVTSLRIFVWLLLLYLMQVTAIVLYLMMPIVNVSEVLGPLCLMLLMGTVHCQIVSTQITKPSGNNGNRRRRKLRKTVNGDGSRDNGNNSSDKVRAVETLQSAPSVGGFWGTLFGNRIKRVKLVSNKGTETDNDSGCLHPIIKKRQGRPEIRMWQAREKAKVSDGEKCHREAYRHLGNGISDDLSSEEDGDARTQMILLRRSVEGASSDNGCEFKNRKSVFSRHLNSQVKKATTRWCHIVRDSDSLAESEFESTAFSQGSRSGVSAGSRSLNLSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGTHVNTLHSGTKRDPKEDVFQQNHLFWLQNSSPASERVSAIIWEGNECKKMDMSVLEISGIIMSRVNEYQQGVGYQMLGNAVTIGLAFFPFLYRLFREKSLDQLKSISAEEVLTLFCGAPPVTPVVVLSIINFFERLCLTWMFFFMMCVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQVLQGHKTFLNDVYNWEFLIWETALLLFLLRLASLGSETNKKYSNVSILLTEQINLYLKMEKKPNKKEQLTLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAVSGVISDLLGFNIRLWKIKS", "length": 762 }, "evidence": [ { "id": "A0A287AUQ6", "url": "https://omabrowser.org/oma/group/A0A287AUQ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q08DA4-1", "protein_name": "Protein PHTF1", "gene_name": "PHTF1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKADLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVFFPLFSSWWIQVTSLRIFVWLLLLYLMQVIALVLYFMMPIVNVSEVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNRRRRKLRKTVNGDGSRENGNNSSDKARGVETLESAPLNGSFWRTLFGNRMKRVKLICNRGTETDYDSGCLHPIIKKRQCRPEIRMWQTREKAKFSDGEKGRRESFRRLGNGISDDLSSDDDGEAQTQMMILRRSVEGASSDNGCEIKSRKSILSRHLNTQVKKTTSKWCSVVRDSDSLAESEFESAAFSQGSRSGMSGGSRSLNMLRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGAHVSSLHSGTKRDPKEDVFQQNHLFWLQNSSPASDRVSAIIWEGNECKKMDMSVLEISGIIMSRVNAYQQGVGYQMLGNIVTIGLAFFPFLHRLFREKNLDQLKSISAEEILTLFCGAPPVTPIIILSIINFFERLCLTWMFFFMMCVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSFLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQVLRGHKTFLNDAYNWEFLIWESALLLFLLRLASLGSETNKKYSNVSILLTEQINLYLKMEKKPNKKEQLTLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAVSGVISDLLGFNIRLWKIKS", "length": 762 }, "evidence": [ { "id": "A0A287AUQ6", "url": "https://omabrowser.org/oma/group/A0A287AUQ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9QZ09-1", "protein_name": "Protein PHTF1", "gene_name": "Phtf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKPDLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVFFPLFSSWWIQVTSLRIFVWLLLLYLMQVTAVVLYLLMPIVSASEVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNRRRRKLRKTVNGDGSRDNGNNSPDKVRAVETLESASSVGGFWGTLFGNRIKRVKLVSNKGTETDNDSGCFHPILKKRQGRPEIRMWQAREKAKVSDGEKCRREAYRRLGNGISDDLSSEEDGEARTQMILLRRSVEGASSDNGYEVKNRRSILSRHLNSQVKKTTRWCHIVRDSDSLAESEFESAVFSQGSRSGMSGGSRSLNLSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGAHVNTIHSGTKRDPKEDVFQQNHLFWLQNSSPASERVSAIIWEGNECKKMDMSVLEISGIIMSRVNAYEQGVGYQMLGNAVTVGLALFPFLYRLFREKSFDQLKSISAEEVLTLFCGAPPVTPVVILSIINFIERLCLTWMFFFMMCVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQVLQGHKTFLNDAYNWEFLIWETALLLFLLRLASLGSETNKKYSNVSILLTEQINLYLKMEKKPNKKEQLTLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAVSGVISDLLGFNIRLWKIKS", "length": 761 }, "evidence": [ { "id": "A0A287AUQ6", "url": "https://omabrowser.org/oma/group/A0A287AUQ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UMS5-1", "protein_name": "Protein PHTF1", "gene_name": "PHTF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGLKNKPKKMGHIKPDLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVFFPLFSNWWIQVTSLRIFVWLLLLYFMQVIAIVLYLMMPIVNISEVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNRRRRKLRKTVNGDGSRENGNNSSDKVRGIETLESVPIIGGFWETIFGNRIKRVKLISNKGTETDNDPSCVHPIIKRRQCRPEIRMWQTREKAKFSDGEKCRREAFRRLGNGVSDDLSSEEDGEARTQMILLRRSVEGASSDNGCEVKNRKSILSRHLNSQVKKTTTRWCHIVRDSDSLAESEFESAAFSQGSRSGVSGGSRSLNMSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGAHVNTLHSGTKRDPKEDVFQQNHLFWLQNSSPSSDRVSAIIWEGNECKKMDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLAFFPFLHRLFREKSLDQLKSISAEEILTLFCGAPPVTPIIVLSIINFFERLCLTWMFFFMMCVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQVLQGHKTFLNDAYNWEFLIWETALLLFLLRLASLGSETNKKYSNVSILLTEQINLYLKMEKKPNKKEQLTLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAVSGVISDLLGFNIRLWKIKS", "length": 762 }, "evidence": [ { "id": "A0A287AUQ6", "url": "https://omabrowser.org/oma/group/A0A287AUQ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9V9A8-1", "protein_name": "Protein phtf", "gene_name": "phtf", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MKLDEIVAWYQKRIGTYDKQEWEKTVEQRILDGFNSVNLKNTKLKTELIDVDLVRGSTFPKAKPKQSLLTVIRLAILRYVLLPLYAQWWVKQTTPNAFGFILVLYLTQLTNWAIYVLHSSRIVPLDYEKPPNGTLLQAEADGDASDKDADKESEEHAALLSALLIPCALSLLISLIHSQIVATNTASGVSGGSSKNKLRRISASYLSDKAATRENRVRRRKKIVRVRQVEADLSQASSNISLPNRRTATSTIEVLPRPVTPLPSPTVTCATVPDPTTPTTPSPSVIRRSTNEETYLTTTAISPLTQPLAAIDACYDLSRKAGGAAPESPKKRNVNWHTPIQIYATYELGEEPCSSRKVAEESAPESVGERLCSVKPDYQTRRNIGEDDGFESLNGKSSSGEDNNHSPLPNAVAVAAPPAPVQTNQLRLRLNTTNGVTASASPTEKKPQSRGNESSTSCAESDECDDADIMSSPASGCNQECTTSATDWLGVTTNSEDCSYTSDLDHSDGGLKHTAFSDEDPGELDITPTTILNPHSSLDRISCTIWDQRDAKKAQLSVLEIASCIIERVDSMGEANDYIYIGVVFSFLLTLIPIFCRLCEVTLGSDAEKASEISYFNMPQLLWEKSSASLFTLLGLAFGDSQWERMVLALGFVQRLCLTLILFIIFAVAERTFKQRFLYAKLFSHLTSSRRARKSNLPHFRLNKVRNIKTWLSVRSYLKKRGPQRSVDIIVSAAFIVTLLLLAFLSVEWLKDSAHLHTHLTLEALIWSITIGIFLLRFMTLGQKIQHKYRSVSVLITEQINLYLQIEQKPKKKDELMVSNSVLKLAADLLKELETPFKLSGLSANPYLFTTIKVVILSALSGVLSEVLGFKLKLHKIKIK", "length": 880 }, "evidence": [ { "id": "A0A287AUQ6", "url": "https://omabrowser.org/oma/group/A0A287AUQ6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUQ6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUQ6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUQ6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 179, "end_pos": 181, "annotation": "n_glycosylation_sequon" }, { "start_pos": 180, "end_pos": 182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 431, "end_pos": 433, "annotation": "n_glycosylation_sequon" }, { "start_pos": 674, "end_pos": 676, "annotation": "n_glycosylation_sequon" }, { "start_pos": 733, "end_pos": 735, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AUQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUQ6" }, { "id": "PF12129", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12129" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHTF1/2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 150, "start_aa": "Glu", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 124, "end_pos": 126 }, { "start_pos": 179, "end_pos": 181 }, { "start_pos": 180, "end_pos": 182 }, { "start_pos": 224, "end_pos": 226 }, { "start_pos": 431, "end_pos": 433 }, { "start_pos": 674, "end_pos": 676 }, { "start_pos": 733, "end_pos": 735 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AY70-1", "uniprot_ac": "A0A287AY70", "uniprot_id": "A0A287AY70_PIG", "mass": { "chemical_mass": 30400.0, "monoisotopic_mass": 30400.0 }, "refseq": { "ac": "XP_020929684", "name": "coiled-coil domain-containing protein 117 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929684" }, "gene_names": [ { "name": "CCDC117", "type": "recommended", "evidence": [ { "id": "A0A287AY70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AY70" } ] }, { "name": "CCDC117", "type": "synonym", "evidence": [ { "id": "XP_020929684", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929684" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 117", "type": "synonym", "evidence": [ { "id": "A0A287AY70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AY70/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 117 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020929684", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929684" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AY70", "url": "https://www.uniprot.org/uniprotkb/A0A287AY70" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC117", "url": "https://www.uniprot.org/uniprotkb/A0A287AY70", "locus": { "chromosome": "14", "start_pos": 46008290, "end_pos": 45995586, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032261", "url": "https://www.ensembl.org/id/ENSSSCG00000032261" } ] } } ], "crossref": [ { "id": "A0A287AY70", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AY70", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032261", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032261", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110256859", "url": "https://www.ncbi.nlm.nih.gov/gene/110256859", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031630", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031630", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR36128", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36128", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36128:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36128:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020929684", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929684", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A303", "url": "https://www.uniprot.org/uniprotkb/A0A287A303", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A303-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A303-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AY70", "url": "https://www.uniprot.org/uniprotkb/A0A287AY70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AY70-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW63", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW63-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW63-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALGRPFSGLPLSGGSDFLQPPPAFPGRAFPPGADGAELTPRPGPRAAPSSPGGSAARGRVSDHCRKKHKREEEEDDDCPVRKKRLTEAGLCASPNDWILCAHQNIEGHGVNPCSSGLSAPGILDVICEEMDQTTGEPQCEVARRRLQEIEDRIIDEDEEVEADRNINHLPSLVLSDTMKTGLKREFDEVFTKKMIESMSRPSMELVLWKPLPELLSDKPKPSSDAKNYTGESQTKHAAAGTAFPQRTELFVEPRQTGLPVYNSLETAACTEEEMEL", "length": 278, "header": "tr|A0A287AY70-1|A0A287AY70_PIG Isoform 1 of Coiled-coil domain containing 117 OS=Sus scrofa OX=9823 GN=CCDC117 PE=4 SV=2 CANONICAL=A0A287AY70-1" }, "isoforms": [ { "isoform_ac": "A0A287A303-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY70/entry#A0A287A303-1", "sequence": { "sequence": "MAALGRPFSGLPLSGGSDFLQPPPAFPGRAFPPGADGAELTPRPGPRAAPSSPGGSAARGRCPVRKKRLTEAGLCASPNDWILCAHQNIEGHGVNPCSSGLSAPGILDVICEEMDQTTGEPQCEVARRRLQEIEDRIIDEDEEVEADRNINHLPSLVLSDTMKTGLKREFDEVFTKKMIESMSRPSMELVLWKPLPELLSDKPKPSSDAKNYTGESQTKHAAAGTAFPQRTELFVEPRQTGLPVYNSLETAACTEEEMEL", "length": 260, "header": "tr|A0A287A303-1|A0A287AY70_PIG Computationally mapped isoform of Coiled-coil domain containing 117 OS=Sus scrofa OX=9823 GN=CCDC117 PE=4 SV=2 CANONICAL=A0A287AY70-1" }, "locus": { "chromosome": "14", "start_pos": 46005475, "end_pos": 45995785, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064861.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064861.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038143.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038143.2" } ] } }, { "isoform_ac": "A0A287AY70-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY70/entry#A0A287AY70-1", "sequence": { "sequence": "MAALGRPFSGLPLSGGSDFLQPPPAFPGRAFPPGADGAELTPRPGPRAAPSSPGGSAARGRVSDHCRKKHKREEEEDDDCPVRKKRLTEAGLCASPNDWILCAHQNIEGHGVNPCSSGLSAPGILDVICEEMDQTTGEPQCEVARRRLQEIEDRIIDEDEEVEADRNINHLPSLVLSDTMKTGLKREFDEVFTKKMIESMSRPSMELVLWKPLPELLSDKPKPSSDAKNYTGESQTKHAAAGTAFPQRTELFVEPRQTGLPVYNSLETAACTEEEMEL", "length": 278, "header": "tr|A0A287AY70-1|A0A287AY70_PIG Isoform 1 of Coiled-coil domain containing 117 OS=Sus scrofa OX=9823 GN=CCDC117 PE=4 SV=2 CANONICAL=A0A287AY70-1" }, "locus": { "chromosome": "14", "start_pos": 46005475, "end_pos": 45995785, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058583.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058583.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049094.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049094.2" } ] } }, { "isoform_ac": "A0A5G2QW63-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY70/entry#A0A5G2QW63-1", "sequence": { "sequence": "MAALGRPFSGLPLSGGSDFLQPPPAFPGRAFPPGADGAELTPRPGPRAAPSSPGGSAARGRVSDHCRKKHKREEEEDDEIIDEDEEVEADRNINHLPSLVLSDTMKTGLKREFDEVFTKKMIESMSRPSMELVLWKPLPELLSDKPKPSSDAKNYTGESQTKHAAAGTAFPQRTELFVEPRQTGLPVYNSLETAACTEEEMEL", "length": 203, "header": "tr|A0A5G2QW63-1|A0A287AY70_PIG Computationally mapped isoform of Coiled-coil domain containing 117 OS=Sus scrofa OX=9823 GN=CCDC117 PE=4 SV=1 CANONICAL=A0A287AY70-1" }, "locus": { "chromosome": "14", "start_pos": 46005475, "end_pos": 45995785, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077766.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077766.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066168.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066168.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW63", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW63" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "A0A287AY70", "url": "https://www.uniprot.org/uniprotkb/A0A287AY70" } ], "pmid": "" }, { "name": "positive regulation of DNA repair", "id": "GO:0045739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045739", "evidence": [ { "database": "UniProtKB", "id": "A0A287AY70", "url": "https://www.uniprot.org/uniprotkb/A0A287AY70" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitotic spindle", "id": "GO:0072686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072686", "evidence": [ { "database": "UniProtKB", "id": "A0A287AY70", "url": "https://www.uniprot.org/uniprotkb/A0A287AY70" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AY70-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 278, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AY70-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AY70" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 229, "end_pos": 231 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ARW4-1", "uniprot_ac": "A0A287ARW4", "uniprot_id": "A0A287ARW4_PIG", "mass": { "chemical_mass": 60369.0, "monoisotopic_mass": 60369.0 }, "refseq": {}, "gene_names": [ { "name": "FGGY", "type": "recommended", "evidence": [ { "id": "A0A287ARW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4" } ] } ], "protein_names": [ { "name": "FGGY carbohydrate kinase domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287ARW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Catalyzes ATP-dependent phosphorylation of D-ribulose at C-5 to form D-ribulose 5-phosphate. Postulated to function in a metabolite repair mechanism by preventing toxic accumulation of free D-ribulose formed by non-specific phosphatase activities. Alternatively, may play a role in regulating D-ribulose 5-phosphate recycling in the pentose phosphate pathway. Can phosphorylate ribitol with low efficiency.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM76", "url": "https://www.uniprot.org/uniprotkb/A0A287AM76#function" }, { "database": "UniProtKB", "id": "ARBA00057246", "url": "https://www.uniprot.org/uniprotkb/ARBA00057246#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ARW4", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FGGY", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4", "locus": { "chromosome": "6", "start_pos": 152754924, "end_pos": 153213127, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003828", "url": "https://www.ensembl.org/id/ENSSSCG00000003828" } ] } } ], "crossref": [ { "id": "A0A287ARW4", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ARW4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003828", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003828", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07782", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07782", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000577", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000577", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018484", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018484", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018485", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018485", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43435", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43435", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43435:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43435:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00370", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00370", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02782", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02782", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "17601", "url": "https://www.rhea-db.org/rhea/17601", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A313", "url": "https://www.uniprot.org/uniprotkb/A0A287A313", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A313-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A313-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AM76", "url": "https://www.uniprot.org/uniprotkb/A0A287AM76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AM76-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARW4", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BF98", "url": "https://www.uniprot.org/uniprotkb/A0A287BF98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BF98-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BF98-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT28", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT28-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7A8", "url": "https://www.uniprot.org/uniprotkb/F1S7A8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7A8-1", "url": "https://www.uniprot.org/uniprotkb/F1S7A8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7A9", "url": "https://www.uniprot.org/uniprotkb/F1S7A9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7A9-1", "url": "https://www.uniprot.org/uniprotkb/F1S7A9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVPRGDREPGSYYVGVDVGTGSVRAALVDQRGTLVAFADQPVNQWEPQFNHHEQSSEDIWAACCVVTKKVVQGINLNRIRGLGFDATCSLVVLDKEFRPLPVNHEGDPHRNIIMWLDHRAISQVHRINETKHSVLQYVGGVMSVEMQAPKLLWLKENLRETCWDKAGHFFDLPDFLSWKATGVPARSLCSLVCKWTYSAEKGWDDSFWKVIGLEDLIANNYNKIGNKVLPPGASLGSGLTPEAAKDLGLPAGIAVAASLIDAHAGGLGVIGADVRGHGLACEGQPVTSRLAVICGTSSCHMGISKNPIFVPGVWGPYFSAMVPGFWLNEGGQSVTGKLIDHMVQGHAVFPELQAKATARCQSVYAYLNSHLDLIKKTQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMVSNSHKHSTSFTVATMLMLASVFPFKFGTRLIIEAMETAGHSISTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAILGACASGDFASVQEAMARMSKVGKVVFPRCEDKRYYDKKYQVFLKLVEHQKEYAAIMKGD", "length": 554, "header": "tr|A0A287ARW4-1|A0A287ARW4_PIG Isoform 1 of FGGY carbohydrate kinase domain-containing protein OS=Sus scrofa OX=9823 GN=FGGY PE=1 SV=1 CANONICAL=A0A287ARW4-1" }, "isoforms": [ { "isoform_ac": "A0A287A313-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4/entry#A0A287A313-1", "sequence": { "sequence": "MAVPRGDREPGSYYVGVDVGTGSVRAALVDQRGTLVAFADQPVNQWEPQFNHHEQSSEDIWAACCVVTKKVVQGINLNRIRGLGFDATCSLVVLDKEFRPLPVNHEGDPHRNIIMWLDHRAISQVHRINETKHSVLQYVGGVMSVEMQAPKLLWLKENLRETCWDKAGHFFDLPDFLSWKATGVPARSLCSLVCKWTYSAEKGWDDSFWKVIGLEDLIANNYNKIGNKVLPPGASLGSGLTPEAAKDLGLPAGIAVAASLIDAHAGGLGVIGADVRGHGLACEGQPVTSRLAVICGTSSCHMGISKNPIFVPGVWGPYFSAMVPGFWLNEGGQSVTGKLIDHMVQGHAVFPELQAKATARCQSVYAYLNSHLDLIKKTQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMVSNSHKHSTSFTVATMLMLASVFPFKFGTRLIIEAMETAGHSISTLFLCGGLSKNPLFVQMHADITGKIAEPPMWKWGFCL", "length": 490, "header": "tr|A0A287A313-1|A0A287ARW4_PIG Computationally mapped isoform of FGGY carbohydrate kinase domain-containing protein OS=Sus scrofa OX=9823 GN=FGGY PE=1 SV=1 CANONICAL=A0A287ARW4-1" }, "locus": { "chromosome": "6", "start_pos": 153191450, "end_pos": 152856829, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049878.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049878.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038155.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038155.2" } ] } }, { "isoform_ac": "A0A287AM76-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4/entry#A0A287AM76-1", "sequence": { "sequence": "MAVPRGDREPGSYYVGVDVGTGSVRAALVDQRGTLVAFADQPVNQWEPQFNHHEQSSEDIWAACCVVTKKVVQGINLNRIRGLGFDATCSLVVLDKEFRPLPVNHEGDPHRNIIMWLDHRAISQVHRINETKHSVLQYVGGVMSVEMQAPKLLWLKENLRETCWDKAGHFFDLPDFLSWKATGVPARSLCSLVCKWTYSAEKGWDDSFWKVIGLEDLIANNYNKIGNKVLPPGASLGSGLTPEAAKDLGLPAGIAVAASLIDAHAGGLGVIGADVRGHGLACEGQPVTSRLAVICGTSSCHMGISKNPIFVPGVWGPYFSAMVPGFWLNEGGQSVTGKLIDHMVQGHAVFPELQAKATARCQSVYAYLNSHLDLIKKTQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLKLSQDLDDLAILYLATVQAIAFGTRLIIEAMETAGHSISTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAILGACASGDFASVQVGEDRGVGHGPSPVWGYPSS", "length": 526, "header": "tr|A0A287AM76-1|A0A287ARW4_PIG Computationally mapped isoform of FGGY carbohydrate kinase domain-containing protein OS=Sus scrofa OX=9823 GN=FGGY PE=1 SV=1 CANONICAL=A0A287ARW4-1" }, "locus": { "chromosome": "6", "start_pos": 153191450, "end_pos": 152849989, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039723.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039723.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045111.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045111.2" } ] } }, { "isoform_ac": "A0A287ARW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4/entry#A0A287ARW4-1", "sequence": { "sequence": "MAVPRGDREPGSYYVGVDVGTGSVRAALVDQRGTLVAFADQPVNQWEPQFNHHEQSSEDIWAACCVVTKKVVQGINLNRIRGLGFDATCSLVVLDKEFRPLPVNHEGDPHRNIIMWLDHRAISQVHRINETKHSVLQYVGGVMSVEMQAPKLLWLKENLRETCWDKAGHFFDLPDFLSWKATGVPARSLCSLVCKWTYSAEKGWDDSFWKVIGLEDLIANNYNKIGNKVLPPGASLGSGLTPEAAKDLGLPAGIAVAASLIDAHAGGLGVIGADVRGHGLACEGQPVTSRLAVICGTSSCHMGISKNPIFVPGVWGPYFSAMVPGFWLNEGGQSVTGKLIDHMVQGHAVFPELQAKATARCQSVYAYLNSHLDLIKKTQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMVSNSHKHSTSFTVATMLMLASVFPFKFGTRLIIEAMETAGHSISTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAILGACASGDFASVQEAMARMSKVGKVVFPRCEDKRYYDKKYQVFLKLVEHQKEYAAIMKGD", "length": 554, "header": "tr|A0A287ARW4-1|A0A287ARW4_PIG Isoform 1 of FGGY carbohydrate kinase domain-containing protein OS=Sus scrofa OX=9823 GN=FGGY PE=1 SV=1 CANONICAL=A0A287ARW4-1" }, "locus": { "chromosome": "6", "start_pos": 153191450, "end_pos": 152755071, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060043.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060043.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046601.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046601.2" } ] } }, { "isoform_ac": "A0A287BF98-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4/entry#A0A287BF98-1", "sequence": { "sequence": "MAVPRGDREPGSYYVGVDVGTGSVRAALVDQRGTLVAFADQPVNQWEPQFNHHEQSSEDIWAACCVVTKKVVQGINLNRIRGLGFDATCSLVVLDKEFRPLPVNHEGDPHRNIIMWLDHRAISQVHRINETKHSVLQYVGGVMSVEMQAPKLLWLKENLRETCWDKAGHFFDLPDFLSWKATGVPARSLCSLVCKWTYSAEKGWDDSFWKVIGLEDLIANNYNKIGNKVLPPGASLGSGLTPEAAKDLGLPAGIAVAASLIDAHAGGLGVIGADVRGHGLACEGQPVTSRLAVICGTSSCHMGISKNPIFVPGVWGPYFSAMVPGFWLNEGGQSVTGKLIDHMVQGHAVFPELQAKATARCQSVYAYLNSHLDLIKKTQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMVSNSHKHSTSFTVATMLMLASVFPFKFGTRLIIEAMETAGHSISTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAILGACASGDFASVQNHASQIGLLHSKRRTLQEH", "length": 526, "header": "tr|A0A287BF98-1|A0A287BF98_PIG Computationally mapped isoform of FGGY carbohydrate kinase domain-containing protein OS=Sus scrofa OX=9823 GN=FGGY PE=1 SV=2 CANONICAL=A0A287ARW4-1" }, "locus": { "chromosome": "6", "start_pos": 153191450, "end_pos": 152783485, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055856.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055856.3" }, { "database": "Ensembl 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"chromosome": "6", "start_pos": 153191450, "end_pos": 152849989, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086591.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086591.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061320.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061320.2" } ] } }, { "isoform_ac": "F1S7A8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4/entry#F1S7A8-1", "sequence": { "sequence": "MAVPRGDREPGSYYVGVDVGTGSVRAALVDQRGTLVAFADQPVNQWEPQFNHHEQSSEDIWAACCVVTKKVVQGINLNRIRGLGFDATCSLVVLDKEFRPLPVNHEGDPHRNIIMWLDHRAISQVHRINETKHSVLQYVGGVMSVEMQAPKLLWLKENLRETCWDKAGHFFDLPDFLSWKATGVPARSLCSLVCKWTYSAEKGWDDSFWKVIGLEDLIANNYNKIGNKVLPPGASLGSGLTPEAAKDLGLPAGIAVAASLIDAHAGGLGVIGADVRGHGLACEGQPVTSRLAVICGTSSCHMGISKNPIFVPGVWGPYFSAMVPGFWLNEGGQSVTGKLIDHMVQGHAVFPELQAKATARCQSVYAYLNSHLDLIKKTQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMVSNSHKHSTSFTVATMLMLASVFPFKFGTRLIIEAMETAGHSISTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAILGACASGDFASVQTDSCVSQTNPCKWPVESYDYSLFCNACPQDKPSPLTAVVYPQGQSLHASFWLS", "length": 560, "header": "tr|F1S7A8-1|A0A287ARW4_PIG Computationally mapped isoform of FGGY carbohydrate kinase domain-containing protein OS=Sus scrofa OX=9823 GN=FGGY PE=1 SV=5 CANONICAL=A0A287ARW4-1" }, "locus": { "chromosome": "6", "start_pos": 153191450, "end_pos": 152843551, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004237.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004237.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004142.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004142.5" } ] } }, { "isoform_ac": "F1S7A9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4/entry#F1S7A9-1", "sequence": { "sequence": "MAVPRGDREPGSYYVGVDVGTGSVRAALVDQRGTLVAFADQPVNQWEPQFNHHEQSSEDIWAACCVVTKNLRETCWDKAGHFFDLPDFLSWKATGVPARSLCSLVCKWTYSAEKGWDDSFWKVIGLEDLIANNYNKIGNKVLPPGASLGSGLTPEAAKDLGLPAGIAVAASLIDAHAGGLGVIGADVRGHGLACEGQPVTSRLAVICGTSSCHMGISKNPIFVPGVWGPYFSAMVPGFWLNEGGQSVTGKLIDHMVQGHAVFPELQAKATARCQSVYAYLNSHLDLIKKTQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMVSNSHKHSTSFTVATMLMLASVFPFKFGTRLIIEAMETAGHSISTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAILGACASGDFASVQEAMARMSKVGKVVFPRCEDKRYYDKKYQVFLKLVEHQKEYAAIMKGD", "length": 466, "header": "tr|F1S7A9-1|A0A287ARW4_PIG Computationally mapped isoform of FGGY carbohydrate kinase domain-containing protein OS=Sus scrofa OX=9823 GN=FGGY PE=1 SV=5 CANONICAL=A0A287ARW4-1" }, "locus": { "chromosome": "6", "start_pos": 153191450, "end_pos": 152755071, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004236.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004236.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004141.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004141.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT28", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT28" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARW4", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4" } ], "pmid": "" }, { "name": "pentose metabolic process", "id": "GO:0019321", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019321", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARW4", "url": "https://www.uniprot.org/uniprotkb/A0A287ARW4" } ], "pmid": "" }, { "name": "neuron cellular homeostasis", "id": "GO:0070050", "url": 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"MENLELRLKNAPYFRCERGDDSVPVCRKCETCVLAWKVFSTKEWFRRVGESSQTRFLVSVLVQLDSLYLLHYFQNILQTTQGKDFVYHRSRVNLSNQEGRMAKFSLNQRLDKTVEQKMRELLCWFGNSTHQMKVNYTLLLMQMCQPKLLLTAASVIRVLFQREWSSVSGTHPDFNDVFFFPEKGHAAPGGLPQVCWAARTKHATFSLSQTSGKANLQQNVRRAAAPSDGRWKSSVRCISEMTRLFPEKASESRAESAPRDVLVDPDAVRELSSGLSSYRDFIRQLPAHLSKHILSMLDRNTLNRCASVSQHWAALAHQVRTDLSVHSFIQHQLAFLQGSYTRGVDPRYAHRVTIPVPKMADGGTRLRVKSQKWKLRTKNDYSLWSAYQSQETQQVQLEERNVFCGTYNIRILSDMWDRNRIIHYSGGGLLAVSSNRKIHLLDLIQIKELPVKFRGHAGSVRALFLCEEENFLLSGSYDLSIRYWDLKSGACVRIFNGHQGTITCMDVHKNRLASGAKDCQVKEWDIDTGKCLKTFRHKDPILATRINDTYIVSSCEKGTVKVWQVATAQLLKTLNGHEGAVRCLCFDQWHLVSGSADGLVMAWSMVGKYERCLMAFKHPKEVLHVALLFLRVISACADGKIRIYSLLNGHCLKVMKANGRGDPVLSFFIQGNRMVINTESNVLMFQFENVKWQYPPEQAGPKDKAEDKEENSLTEVLSKSSTQINSPRDSTSSKQTARESLLSKPHKSRAPLRVSRLPTALTEAPLSQGKPKSPRKDGRRQMGCRGADGTAGEQENLEAKSLTGDDAEKVPKQGQLGTGADLMSRPKKKSWHIAMSPDQLLLTVHALQKAHTSGECAYPRRPQAQVLDAWGPSISYPRKVLSLKGQSVQHAVDRLRRSSPPTDVRQTSVPLEVQKLQPNLKTSLQSPRVQSTIPQPVLIRPRFSGSSKGEDGATSSTEGTVRSSGPLTSPQVIKPNRMLAPPLGGTAQAAKKDRPRFHTALDPFRMNTEFMLLTVKEEKEYEQAKVKENQAAEPAGRVDPERASRAAWIRKIKGLPIDDFMKPGKTAAPELGQNIFI", "length": 1077, "header": "tr|A0A287AZ89-1|A0A287AZ89_PIG Isoform 1 of F-box and WD repeat domain containing 10B OS=Sus scrofa OX=9823 GN=FBXW10B PE=4 SV=1 CANONICAL=A0A287AZ89-1" }, "isoforms": [ { "isoform_ac": "A0A287A3J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ89/entry#A0A287A3J2-1", "sequence": { "sequence": "MENLELRLKNAPYFRCERGDDSVPVCRKCETCVLAWKVFSTKEWFRRVGESSQTRFLVSVLVQLDSLYLLHYFQNILQTTQGKDFVYHRSRVNLSNQEGRMAKFSLNQRLDKTVEQKMRELLCWFGNSTHQMKVNYTLLLMQMCQPKLLLTAASVIRVLFQREWSSVSGTHPDFNDVFFFPEKGHAAPGGLPQVCWAARTKHATFSLSQTSGKANLQQNVRRAAAPSDGRWKSSVRCISEMTRLFPEKASESRAESAPRDVLVDPDAVRELSSGLSSYRDFIRQLPAHLSKHILSMLDRNTLNRCASVSQHWAALAHQVRTDLSVHSFIQHQLAFLQGSYTRGVDPRYAHRVTIPVPKMADGGTRLRVKSQKWKLRTKNDYSLWSAYQSQETQQVQLEERNVFCGTYNIRILSDMWDRNRIIHYSGGGLLAVSSNRKIHLLDLIQIKELPVKFRGHAGSVRALFLCEEENFLLSGSYDLSIRYWDLKSGACVRIFNGHQGTITCMDVHKNRLASGAKDCQVKEWDIDTGKCLKTFRHKDPILATRINDTYIVSSCEKGTVKVWQVATAQLLKTLNGHEGAVRCLCFDQWHLVSGSADGLVMAWSMVGKYERCLMAFKHPKMVINTESNVLMFQFENVKWQYPPEQAGPKDKAEDKEENSLTEVLSKSSTQINSPRDSTSSKQTARESLLSKPHKSRAPLRVSRLPTAALTEAPLSQGKPKSPRKDGRRQMGCRGADGTAGEQENLEAKSLTGDDAEKVPKQGQLGTGADLMSRPKKKSWHIAMSPDQLLLTVHALQKAHTSGECAYPRRPQAQVLDAWGPSISYPRKVLSLKGQSVQHAVDRLRRSSPPTDVRQTSVPLEVQKLQPNLKTSLQSPRVQSTIPQPVLIRPRFSGSSKGEDGATSSTEGTVRSSGPLTSPQVIKPNRMLAPPLGGTAQAAKKDRPRFHTALDPFRMNTEFMLLTVKEEKEYEQAKVKENQAAEPAGRVDPERASRAAWIRKIKGLPIDDFMKPGKTAAPELGQNIFI", "length": 1025, "header": "tr|A0A287A3J2-1|A0A287AZ89_PIG Computationally mapped isoform of F-box and WD repeat domain containing 10B OS=Sus scrofa OX=9823 GN=FBXW10B PE=4 SV=1 CANONICAL=A0A287AZ89-1" }, "locus": { "chromosome": "12", "start_pos": 58922888, "end_pos": 58896556, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049296.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049296.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038465.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038465.1" } ] } }, { "isoform_ac": "A0A287AZ89-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ89/entry#A0A287AZ89-1", "sequence": { "sequence": "MENLELRLKNAPYFRCERGDDSVPVCRKCETCVLAWKVFSTKEWFRRVGESSQTRFLVSVLVQLDSLYLLHYFQNILQTTQGKDFVYHRSRVNLSNQEGRMAKFSLNQRLDKTVEQKMRELLCWFGNSTHQMKVNYTLLLMQMCQPKLLLTAASVIRVLFQREWSSVSGTHPDFNDVFFFPEKGHAAPGGLPQVCWAARTKHATFSLSQTSGKANLQQNVRRAAAPSDGRWKSSVRCISEMTRLFPEKASESRAESAPRDVLVDPDAVRELSSGLSSYRDFIRQLPAHLSKHILSMLDRNTLNRCASVSQHWAALAHQVRTDLSVHSFIQHQLAFLQGSYTRGVDPRYAHRVTIPVPKMADGGTRLRVKSQKWKLRTKNDYSLWSAYQSQETQQVQLEERNVFCGTYNIRILSDMWDRNRIIHYSGGGLLAVSSNRKIHLLDLIQIKELPVKFRGHAGSVRALFLCEEENFLLSGSYDLSIRYWDLKSGACVRIFNGHQGTITCMDVHKNRLASGAKDCQVKEWDIDTGKCLKTFRHKDPILATRINDTYIVSSCEKGTVKVWQVATAQLLKTLNGHEGAVRCLCFDQWHLVSGSADGLVMAWSMVGKYERCLMAFKHPKEVLHVALLFLRVISACADGKIRIYSLLNGHCLKVMKANGRGDPVLSFFIQGNRMVINTESNVLMFQFENVKWQYPPEQAGPKDKAEDKEENSLTEVLSKSSTQINSPRDSTSSKQTARESLLSKPHKSRAPLRVSRLPTALTEAPLSQGKPKSPRKDGRRQMGCRGADGTAGEQENLEAKSLTGDDAEKVPKQGQLGTGADLMSRPKKKSWHIAMSPDQLLLTVHALQKAHTSGECAYPRRPQAQVLDAWGPSISYPRKVLSLKGQSVQHAVDRLRRSSPPTDVRQTSVPLEVQKLQPNLKTSLQSPRVQSTIPQPVLIRPRFSGSSKGEDGATSSTEGTVRSSGPLTSPQVIKPNRMLAPPLGGTAQAAKKDRPRFHTALDPFRMNTEFMLLTVKEEKEYEQAKVKENQAAEPAGRVDPERASRAAWIRKIKGLPIDDFMKPGKTAAPELGQNIFI", "length": 1077, "header": "tr|A0A287AZ89-1|A0A287AZ89_PIG Isoform 1 of F-box and WD repeat domain containing 10B OS=Sus scrofa OX=9823 GN=FBXW10B PE=4 SV=1 CANONICAL=A0A287AZ89-1" }, "locus": { "chromosome": "12", "start_pos": 58922888, "end_pos": 58896556, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053270.2", "url": "https://www.ensembl.org/id/ENSSSCT00000053270.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049279.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049279.1" } ] } }, { "isoform_ac": "F1SDF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ89/entry#F1SDF0-1", "sequence": { "sequence": "MENLELRLKNAPYFRCERGDDSVPVCRKCETCVLAWKVFSTKEWFRRVGESSQTRFLVSVLVQLDSLYLLHYFQNILQTTQGKDFVYHRSRVNLSNQEGRMAKFSLNQRLDKTVEQKMRELLCWFGNSTHQMKVNYTLLLMQMCQPKLLLTAASVIRVLFQREWSSVSGTHPDFNDVFFFPEKGHAAPGGLPQVCWAARTKHATFSLSQTSGKANLQQNVRRAAAPSDGRWKSSVRCISEMTRLFPEKASESRAESAPRDVLVDPDAVRELSSGLSSYRDFIRQLPAHLSKHILSMLDRNTLNRCASVSQHWAALAHQVRTDLSVHSFIQHQLAFLQGSYTRGVDPRYAHRVTIPVPKMADGGTRLRVKSQKWKLRTKNDYSLWSAYQSQETQQVQLEERNVFCGTYNIRILSDMWDRNRIIHYSGGGLLAVSSNRKIHLLDLIQIKELPVKFRGHAGSVRALFLCEEENFLLSGSYDLSIRYWDLKSGACVRIFNGHQGTITCMDVHKNRLASGAKDCQTLNGHEGAVRCLCFDQWHLVSGSADGLVMAWSMVGKYERCLMAFKHPKEVLHVALLFLRVISACADGKIRIYSLLNGHCLKVMKANGRGDPVLSFFIQGNRMVINTESNVLMFQFENVKWQYPPEQAGPKDKAEDKEENSLTEVLSKSSTQINSPRDSTSSKQTARESLLSKPHKSRAPLRVSRLPTAALTEAPLSQGKPKSPRKDGRRQMGCRGADGTAGEQENLEAKSLTGDDAEKVPKQGQLGTGADLMSRPKKKSWHIAMSPDQLLLTVHALQKAHTSGECAYPRRPQAQVLDAWGPSISYPRKVLSLKGQSVQHAVDRLRRSSPPTDVRQTSVPLEVQKLQPNLKTSLQSPRVQSTIPQPVLIRPRFSGSSKGEDGATSSTEGTVRSSGPLTSPQVIKPNRMLAPPLGGTAQAAKKDRPRFHTALDPFRMNTEFMLLTVKEEKEYEQAKVKENQAAEPAGRVDPERASRAAWIRKIKGLPIDDFMKPGKTAAPELGQNIFI", "length": 1026, "header": "tr|F1SDF0-1|A0A287AZ89_PIG Computationally mapped isoform of F-box and WD repeat domain containing 10B OS=Sus scrofa OX=9823 GN=FBXW10B PE=4 SV=3 CANONICAL=A0A287AZ89-1" }, "locus": { "chromosome": "12", "start_pos": 58922888, "end_pos": 58896556, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019621.3", "url": "https://www.ensembl.org/id/ENSSSCT00000019621.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019101.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019101.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDF0", "url": "https://www.uniprot.org/uniprotkb/F1SDF0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5SUS0-1", "protein_name": "F-box/WD repeat-containing protein 10", "gene_name": "Fbxw10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENREPKLKQAPYFRCEKGPNWVPVCQKCEACVLAWKIFATKEWFRRVNDISQRRFLVSILGQLNSLYLLQYFQNILETTQGKDFIYNRSRIKLSRKGGKEEEVVKSSLNQMLDKTVERKMKEILYWFGNSTHRTKANYTLLLLQMCDSNLLLTAANVIRVLFMKEWNSISGLHDDTPDVMFFPEKKYSGTQDTSYVSWAARPKPVSFPMSKHLGNKLGTENVDRETTEGKGESSLQCIHEMNRQIFGKGGMSRLGDDPCNLLLSLDHVQLLSSGYSKYRDFIRDLPLHLSKYILRMLDKHSLNRCIFVSQHWATLAQQVKVDQSMHSFIQNQISLLQVTKEEKQAYTGSYTRGIDPNYANKVSIPVPKIVDDGKRSRSKNQKWKLRTKTDYNLWNAYQNQETQLVQMEERNVFCGTYNIRVLSDTFDQNRIIHYNGGDLMAISSNRKIHLLDIMQTKELPIEFRGHAGSVRALFLSEEDNILLSGSYDLSIRYWDVKTGACVRIFYGHQGTITCLDVYKNRLVSGAKDGQVKEWDIETGKCLKTFKHKDPILAAKISETYIVSSCERGIVKVWHVVTAQLQKTLTGHEGAVKCLFFNEWHLVSGGADGLVMAWSMVGKYERCLMAFKHPKEVLQVSLLYLRVISACGDGKIRIYNFLNGNCLKVIKVDARGDPVLSFFYQGNRMVAHTDSNILVFQFENVKWQYSSDKNKVKKSKDKEEEREETSLGDEHSRSTIQGHSLKDSVSSKQEFSKSRVHLKQTKNLSSDDMETPVGEVSHPLQKLWKVPMTPDRFLLTISALQQAHNSEEFAYPHRPRPQVIDAWGPSIPYPRKVLSLKGKSVQHAVDQLRSSNLPTGVRQTNIPLEIQKLQPNLKKSLHSPRVQATVPQPSLIRPKVSDSLRGDEHLTSSIDGTMRRAGPLTSMQVIKPNRMLAPRGGTATLSPKKERPRFYTTLDPLRMNTGFMLMTVKEEKEFAEAKMKEYEASVSTKEVDPGKASKAAWIRKIKGLPIDNFMKEGKTAAPELGQNVFI", "length": 1030 }, "evidence": [ { "id": "A0A287AZ89", "url": "https://omabrowser.org/oma/group/A0A287AZ89/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5XX13-1", "protein_name": "F-box/WD repeat-containing protein 10", "gene_name": "FBXW10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MENLESRLKNAPYFRCEKGTDSIPLCRKCETCVLAWKIFSTKEWFCRINDISQRRFLVGILKQLNSLYLLHYFQNILQTTQGKDFIYNRSRINLSKKEGKVVKSSLNQMLDKTVEQKMKEILYWFANSTQWTKANYTLLLLQMCNPKLLLTAANVIRVLFLREENNISGLNQDITDVCFSPEKDHSSKSATSQVYWTAKTQHTSLPLSKAPENEHLLGAASNPEEPWRNSLRCISEMNRLFSGKGDITKPGYDPCNLLVDLDDIRDLSSGFSKYRDFIRYLPIHLSKYILRMLDRHTLNKCASVSQHWAAMAQQVKMDLSAHGFIQNQITFLQGSYTRGIDPNYANKVSIPVPKMVDDGKSMRVKHPKWKLRTKNEYNLWTAYQNEETQQVLIEERNVFCGTYNVRILSDTWDQNRVIHYSGGDLIAVSSNRKIHLLDIIQVKAIPVEFRGHAGSVRALFLCEEENFLLSGSYDLSIRYWDLKSGVCTRIFGGHQGTITCMDLCKNRLVSGGRDCQVKVWDVDTGKCLKTFRHKDPILATRINDTYIVSSCERGLVKVWHIAMAQLVKTLSGHEGAVKCLFFDQWHLLSGSTDGLVMAWSMVGKYERCLMAFKHPKEVLDVSLLFLRVISACADGKIRIYNFLNGNCMKVLKANGRGDPVLSFFIQGNRMVVNTESNVLMFQFEHIKWQYAVEKTKQKKNKEKEEEKEENSLMEILSKCNIQVHSPRESVSSKQTVIQELLPGKPPKSRVLLKPAKFSSAVLIEELQSQGKSKSPRRDADDVEKAQKQGQLETPGKLPSHPKKKSWKIPMSPDQFLLTVSALQHAHNSGEFAYPCRPQTEITDVWGPSISYPRKVLNFKGKSIQRAVDRLRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRVQSTIPQPMIIRSRFSGSLKGGDQVTSSIERAVCSTGPLTSMQVIKPNRMLAPQVGTATLSLKKERPRIYTALDPFRVNTEFVLLTVKEEKEHQEAKMKEYQARESTGVVDPGKVSKAAWIRKIKGLPIDNFTKQGKTAAPELGQNVFI", "length": 1052 }, "evidence": [ { "id": "A0A287AZ89", "url": "https://omabrowser.org/oma/group/A0A287AZ89/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 547, "end_pos": 549, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AZ89-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1077, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AZ89-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AZ89" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AZ89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ89" }, { "id": "PF00646", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 284, "end_pos": 319, "start_aa": "Gln", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 127, "end_pos": 129 }, { "start_pos": 135, "end_pos": 137 }, { "start_pos": 547, "end_pos": 549 }, { 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ARA7-1", "uniprot_ac": "A0A287ARA7", "uniprot_id": "A0A287ARA7_PIG", "mass": { "chemical_mass": 201213.0, "monoisotopic_mass": 201213.0 }, "refseq": {}, "gene_names": [ { "name": "ECPAS", "type": "recommended", "evidence": [ { "id": "A0A287ARA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARA7" } ] } ], "protein_names": [ { "name": "Proteasome adapter and scaffold protein ECM29", "type": "recommended", "evidence": [ { "id": "A0A287ARA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARA7/entry#names_and_taxonomy" } ] }, { "name": "Proteasome-associated protein ECM29 homolog", "type": "synonym", "evidence": [ { "id": "A0A287ARA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARA7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Adapter/scaffolding protein that binds to the 26S proteasome, motor proteins and other compartment specific proteins. May couple the proteasome to different compartments including endosome, endoplasmic reticulum and centrosome. May play a role in ERAD and other enhanced proteolysis. Promotes proteasome dissociation under oxidative stress.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARA7", "url": "https://www.uniprot.org/uniprotkb/A0A287ARA7#function" }, { "database": "UniProtKB", "id": "ARBA00058764", "url": "https://www.uniprot.org/uniprotkb/ARBA00058764#function" }, { "database": "UniProtKB", "id": "A0A287A3L2", "url": "https://www.uniprot.org/uniprotkb/A0A287A3L2#function" }, { "database": "UniProtKB", "id": "F1SNC6", "url": "https://www.uniprot.org/uniprotkb/F1SNC6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ARA7", "url": "https://www.uniprot.org/uniprotkb/A0A287ARA7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ECPAS", "url": "https://www.uniprot.org/uniprotkb/A0A287ARA7", "locus": { "chromosome": "1", "start_pos": 252218819, "end_pos": 252324928, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005459", "url": "https://www.ensembl.org/id/ENSSSCG00000005459" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005459", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005459", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055444", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055444", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23346", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23346", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23346:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23346:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12755", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12755", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23702", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23702", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23731", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23731", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24492", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24492", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A3L2", "url": "https://www.uniprot.org/uniprotkb/A0A287A3L2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A3L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3L2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARA7", "url": "https://www.uniprot.org/uniprotkb/A0A287ARA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARA7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNC6", "url": "https://www.uniprot.org/uniprotkb/F1SNC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNC6-1", "url": "https://www.uniprot.org/uniprotkb/F1SNC6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSYPWYLIIVLLPRSANQLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSSTQEGVRKKVMELLVHLNKRIKSRPKIQLPVETLLVQYQDPAAVSFVTNFTIIYVKMGYPRLPVEKQCELAPTLLTAMEGKPQPQQDSLMHLLIPTLFHMKYPVESSKSASPFNLAEKPKTVQLLLDFMLDVLLMPYGYVLNESQSRQNSSSAQGSSSNSGGGSGIPQPPPGMSFYAAKRVIGDNPWTPEQLEQCKLGIVKFIEAEQVPELEAVLHLVIASSDTRHSVATAADLELKSKQSLIDWNNPAIINKMYKVYLGDIPLKTKEGAVLKPELKRDPVSTRVKLKIVPHLLRSRQAAETFPANIQVVYDGLFGTNTNSKLRTLSLQFVHHICVTCPEVKIKPLGPMLLNGLTKLINEYKEDPKLLSMAYSAVGKLSSRMPHLFTKDIALVQQLFEALCKEEPETRLAIQEALSMMVGAYSTLEGAQRTLMEALVASYLIKPEVQVRQVAVKFASTVFPSDHIPSRYLLLLAAGDPREEVHGEAQRVLRCLPGRNRKESSSKQMPSFPEMVYYIQEKASHRMKTPAKYMTGTTVLPFNPAAFGEIVLYLRMCLAHSAGVVPTSQSLADMQDHAPAIGRYIRTLMSSSQATSSSSSSSSSKSGETNPVQIYIGLLQQLLAGVGGLPVMYCLLEAVSVYPEKLAAKFVDKTEWIKSLMNSSKEEMRELAALFYSVVVSTVSGNELKSMIEQLIKTTKDNHSPEIQHGSLLALGFTVGRYLAKKKMKMAEQQGVETNADFLPEQEELIQSATETIGSFLDSTSPLLAIAACTALGEIGRNGPLPIPSEGSGFTKLHLVESLLNRIPSSKETNKAIKMVNELQFTIGEAITSAAIGTSSVAARDAWLVTEEEYTPPAGAKVNDVVPWVLDVILNKHITSPNPHVRQAACIWLLSLVRKLSAHKEVKSHLKEIQSAFVSVLSENDELSQDVASKGLGLVYELGNEQDQQELVSTLVETLMTGKRAKHEVSGETVVFQGGSLGKTPDGQGLSTYKELCSLASDLSQPDLVYKFMNLANHHAMWNSRKGAAFGFNVIATRAGEQLAPFLPQLVPRLYRYQFDPNLGIRQAMTSIWNALVTDKSMVDKYLKEILQDLVKNLTSNMWRVRESSCLALNDLLRGRPLDDIIDKLPEIWETLFRVQDDIKESVRKAAELALKTLSKVCVKMCDPAKGAAGQKTIAVLLPCLLDKGMMSPVTEVRALSINTLVKISKSAGAMLKPHAPKLIPALLESLSVLEPQVLNYLSLRATDQEKAAMDSARLSAAKSSPMMETINMCLQYLDVSVLGELVPRLCELIRSGVGLGTKGGCASVIVSLTTQCPQDLTPYSGKLMSALLSGLTDRNSVIQKSCAFAMGHLVRTSRDSSTEKLLQKLNGWYMEKEEPVYKTSCALTVHAIGRYSPDVLKNHAKEVLPLAFLGMHEIADEEKAEKEECNLWTEVWQENVPGSFGGIRLYLQELITIAQKALQSQSWKMKAQGAIAMASIAKQTSSLVPPYLGMILTALLQGLAGRTWAGKEELLKAIACVVTACSAELEKPVPNQPSINEILQAVLKECGKENPKYKIVAISCTADVLKATKEDRFQEFADIVIPLIKKNSPESIGVRTSKNEDENEKEKELQLESLLGAFESLGKAWPRNVETQRCYRQELCKLMCERLKLSTWKVQLGVLQSMNAFFQGLMLLEEEHADPEALAEILLETCKSITYSLENKTYSSVRTEALSVIELLLKKLEESKQWESLTSECRVLLIESLATMETDSRPELQEKASLLKKTLENLE", "length": 1820, "header": "tr|A0A287ARA7-1|A0A287ARA7_PIG Isoform 1 of Proteasome adapter and scaffold protein ECM29 OS=Sus scrofa OX=9823 GN=ECPAS PE=1 SV=2 CANONICAL=A0A287ARA7-1" }, "isoforms": [ { "isoform_ac": "A0A287A3L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARA7/entry#A0A287A3L2-1", "sequence": { "sequence": "MYHIDCRDQLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSSTQEGVRKKVMELLVHLNKRIKSRPKIQLPVETLLVQYQDPAAVSFVTNFTIIYVKMGYPRLPVEKQCELAPTLLTAMEGKPQPQQDSLMHLLIPTLFHMKYPVESSKSASPFNLAEKPKTVQLLLDFMLDVLLMPYGYVLNESQSRQNSSSAQGSSSNSGGGSGIPQPPPGMSFYAAKRVIGDNPWTPEQLEQCKLGIVKFIEAEQVPELEAVLHLVIASSDTRHSVATAADLELKSKQSLIDWNNPAIINKMYKVYLGDIPLKTKEGAVLKPELKRDPVSTRVKLKIVPHLLRSRQAAETFPANIQVVYDGLFGTNTNSKLRTLSLQFVHHICVTCPEVKIKPLGPMLLNGLTKLINEYKEDPKLLSMAYSAVGKLSSRMPHLFTKDIALVQQLFEALCKEEPETRLAIQEALSMMVGAYSTLEGAQRTLMEALVASYLIKPEVQVRQVAVKFASTVFPSDHIPSRYLLLLAAGDPREEVHGEAQRVLRCLPGRNRKESSSKQMPSFPEMVYYIQEKASHRMKTPAKYMTGTTVLPFNPAAFGEIVLYLRMCLAHSAGVVPTSQSLADMQDHAPAIGRYIRTLMSSSQATSSSSSSSSSKSGETNPVQIYIGLLQQLLAGVGGLPVMYCLLEAVSVYPEKLAAKFVDKTEWIKSLMNSSKEEMRELAALFYSVVVSTVSGNELKSMIEQLIKTTKDNHSPEIQHGSLLALGFTVGRYLAKKKMKMAEQQGVETNADFLPEQEELIQSATETIGSFLDSTSPLLAIAACTALGEIGRNGPLPIPSEGSGFTKLHLVESLLNRIPSSKETNKMKERAIQTLGYFPVGDGDFPHQKLLLQGLMDSVEAKQIELQFTIGEAITSAAIGTSSVAARDAWLVTEEEYTPPAELSQDVASKGLGLVYELGNEQDQQELVSTLVETLMTGKRAKHEVSGETVVFQGGSLGKTPDGQGLSTYKELCSLASDLSQPDLVYKFMNLANHHAMWNSRKGAAFGFNVIATRAGEQLAPFLPQLVPRLYRYQFDPNLGIRQAMTSIWNALVTDKSMVDKYLKEILQDLVKNLTSNMWRVRESSCLALNDLLRGRPLDDIIDKLPEIWETLFRVQDDIKESVRKAAELALKTLSKVCVKMCDPAKGAAGQKTIAVLLPCLLDKGMMSPVTEVRALSINTLVKISKSAGAMLKPHAPKLIPALLESLSVLEPQVLNYLSLRATDQEKAAMDSARLSAAKSSPMMETINMCLQYLDVSVLGELVPRLCELIRSGVGLGTKGGCASVIVSLTTQCPQDLTPYSGKLMSALLSGLTDRNSVIQKSCAFAMGHLVRTSRDSSTEKLLQKLNGWYMEKEVYKTSCALTVHAIGRYSPDVLKNHAKEVLPLAFLGMHEIADEEKAEKEECNLWTEVWQENVPGSFGGIRLYLQELITIAQKALQSQSWKMKAQGAIAMASIAKQTSSLVPPYLGMILTALLQGLAGRTWAGKEELLKAIACVVTACSAELEKPVPNQPSINEILQAVLKECGKENPKYKIVAISCTADVLKATKEDRFQEFADIVIPLIKKNSPESIGVRTSKNEDENEKEKELQLESLLGAFESLGKAWPRNVETQRCYRQELCKLMCERLKLSTWKVQLGVLQSMNAFFQGLMLLEEEHADPEALAEILLETCKSITYSLENKTYSSVRTEALSVIELLLKKLEESKQWESLTSECRVLLIESLATMETDSRPELQEKASLLKKTLENLE", "length": 1774, "header": "tr|A0A287A3L2-1|A0A287ARA7_PIG Computationally mapped isoform of Proteasome adapter and scaffold protein ECM29 OS=Sus scrofa OX=9823 GN=ECPAS PE=1 SV=2 CANONICAL=A0A287ARA7-1" }, "locus": { "chromosome": "1", "start_pos": 252315656, "end_pos": 252221836, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048061.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048061.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038335.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038335.3" } ] } }, { "isoform_ac": "A0A287ARA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARA7/entry#A0A287ARA7-1", "sequence": { "sequence": "MSYPWYLIIVLLPRSANQLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSSTQEGVRKKVMELLVHLNKRIKSRPKIQLPVETLLVQYQDPAAVSFVTNFTIIYVKMGYPRLPVEKQCELAPTLLTAMEGKPQPQQDSLMHLLIPTLFHMKYPVESSKSASPFNLAEKPKTVQLLLDFMLDVLLMPYGYVLNESQSRQNSSSAQGSSSNSGGGSGIPQPPPGMSFYAAKRVIGDNPWTPEQLEQCKLGIVKFIEAEQVPELEAVLHLVIASSDTRHSVATAADLELKSKQSLIDWNNPAIINKMYKVYLGDIPLKTKEGAVLKPELKRDPVSTRVKLKIVPHLLRSRQAAETFPANIQVVYDGLFGTNTNSKLRTLSLQFVHHICVTCPEVKIKPLGPMLLNGLTKLINEYKEDPKLLSMAYSAVGKLSSRMPHLFTKDIALVQQLFEALCKEEPETRLAIQEALSMMVGAYSTLEGAQRTLMEALVASYLIKPEVQVRQVAVKFASTVFPSDHIPSRYLLLLAAGDPREEVHGEAQRVLRCLPGRNRKESSSKQMPSFPEMVYYIQEKASHRMKTPAKYMTGTTVLPFNPAAFGEIVLYLRMCLAHSAGVVPTSQSLADMQDHAPAIGRYIRTLMSSSQATSSSSSSSSSKSGETNPVQIYIGLLQQLLAGVGGLPVMYCLLEAVSVYPEKLAAKFVDKTEWIKSLMNSSKEEMRELAALFYSVVVSTVSGNELKSMIEQLIKTTKDNHSPEIQHGSLLALGFTVGRYLAKKKMKMAEQQGVETNADFLPEQEELIQSATETIGSFLDSTSPLLAIAACTALGEIGRNGPLPIPSEGSGFTKLHLVESLLNRIPSSKETNKAIKMVNELQFTIGEAITSAAIGTSSVAARDAWLVTEEEYTPPAGAKVNDVVPWVLDVILNKHITSPNPHVRQAACIWLLSLVRKLSAHKEVKSHLKEIQSAFVSVLSENDELSQDVASKGLGLVYELGNEQDQQELVSTLVETLMTGKRAKHEVSGETVVFQGGSLGKTPDGQGLSTYKELCSLASDLSQPDLVYKFMNLANHHAMWNSRKGAAFGFNVIATRAGEQLAPFLPQLVPRLYRYQFDPNLGIRQAMTSIWNALVTDKSMVDKYLKEILQDLVKNLTSNMWRVRESSCLALNDLLRGRPLDDIIDKLPEIWETLFRVQDDIKESVRKAAELALKTLSKVCVKMCDPAKGAAGQKTIAVLLPCLLDKGMMSPVTEVRALSINTLVKISKSAGAMLKPHAPKLIPALLESLSVLEPQVLNYLSLRATDQEKAAMDSARLSAAKSSPMMETINMCLQYLDVSVLGELVPRLCELIRSGVGLGTKGGCASVIVSLTTQCPQDLTPYSGKLMSALLSGLTDRNSVIQKSCAFAMGHLVRTSRDSSTEKLLQKLNGWYMEKEEPVYKTSCALTVHAIGRYSPDVLKNHAKEVLPLAFLGMHEIADEEKAEKEECNLWTEVWQENVPGSFGGIRLYLQELITIAQKALQSQSWKMKAQGAIAMASIAKQTSSLVPPYLGMILTALLQGLAGRTWAGKEELLKAIACVVTACSAELEKPVPNQPSINEILQAVLKECGKENPKYKIVAISCTADVLKATKEDRFQEFADIVIPLIKKNSPESIGVRTSKNEDENEKEKELQLESLLGAFESLGKAWPRNVETQRCYRQELCKLMCERLKLSTWKVQLGVLQSMNAFFQGLMLLEEEHADPEALAEILLETCKSITYSLENKTYSSVRTEALSVIELLLKKLEESKQWESLTSECRVLLIESLATMETDSRPELQEKASLLKKTLENLE", "length": 1820, "header": "tr|A0A287ARA7-1|A0A287ARA7_PIG Isoform 1 of Proteasome adapter and scaffold protein ECM29 OS=Sus scrofa OX=9823 GN=ECPAS PE=1 SV=2 CANONICAL=A0A287ARA7-1" }, "locus": { "chromosome": "1", "start_pos": 252302271, "end_pos": 252221836, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066105.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066105.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046478.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046478.2" } ] } }, { "isoform_ac": "F1SNC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARA7/entry#F1SNC6-1", "sequence": { "sequence": "AVVGSDSLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSSTQEGVRKKVMELLVHLNKRIKSRPKIQLPVETLLVQYQDPAAVSFVTNFTIIYVKMGYPRLPVEKQCELAPTLLTAMEGKPQPQQDSLMHLLIPTLFHMKYPVESSKSASPFNLAEKPKTVQLLLDFMLDVLLMPYGYVLNESQSRQNSSSAQGSSSNSGGGSGIPQPPPGMSFYAAKRVIGDNPWTPEQLEQCKLGIVKFIEAEQVPELEAVLHLVIASSDTRHSVATAADLELKSKQSLIDWNNPAIINKMYKVYLGDIPLKTKEGAVLKPELKRDPVSTRVKLKIVPHLLRSRQAAETFPANIQVVYDGLFGTNTNSKLRTLSLQFVHHICVTCPEVKIKPLGPMLLNGLTKLINEYKEDPKLLSMAYSAVGKLSSRMPHLFTKDIALVQQLFEALCKEEPETRLAIQEALSMMVGAYSTLEGAQRTLMEALVASYLIKPEVQVRQVAVKFASTVFPSDHIPSRYLLLLAAGDPREEVHGEAQRVLRCLPGRNRKESSSKQMPSFPEMVYYIQEKASHRMKTPAKYMTGTTVLPFNPAAFGEIVLYLRMCLAHSAGVVPTSQSLADMQDHAPAIGRYIRTLMSSSQATSSSSSSSSSKSGETNPVQIYIGLLQQLLAGVGGLPVMYCLLEAVSVYPEKLAAKFVDKTEWIKSLMNSSKEEMRELAALFYSVVVSTVSGNELKSMIEQLIKTTKDNHSPEIQHGSLLALGFTVGRYLAKKKMKMAEQQGVETNADFLPEQEELIQSATETIGSFLDSTSPLLAIAACTALGEIGRNGPLPIPSEGSGFTKLHLVESLLNRIPSSKETNKAIKMVNELQFTIGEAITSAAIGTSSVAARDAWLVTEEEYTPPAGAKVNDVVPWVLDVILNKHITSPNPHVRQAACIWLLSLVRKLSAHKEVKSHLKEIQSAFVSVLSENDELSQDVASKGLGLVYELGNEQDQQELVSTLVETLMTGKRAKHEVSGETVVFQGGSLGKTPDGQGLSTYKELCSLASDLSQPDLVYKFMNLANHHAMWNSRKGAAFGFNVIATRAGEQLAPFLPQLVPRLYRYQFDPNLGIRQAMTSIWNALVTDKSMVDKYLKEILQDLVKNLTSNMWRVRESSCLALNDLLRGRPLDDIIDKLPEIWETLFRVQDDIKESVRKAAELALKTLSKVCVKMCDPAKGAAGQKTIAVLLPCLLDKGMMSPVTEVRALSINTLVKISKSAGAMLKPHAPKLIPALLESLSVLEPQVLNYLSLRATDQEKAAMDSARLSAAKSSPMMETINMCLQYLDVSVLGELVPRLCELIRSGVGLGTKGGCASVIVSLTTQCPQDLTPYSGKLMSALLSGLTDRNSVIQKSCAFAMGHLVRTSRDSSTEKLLQKLNGWYMEKEEPVYKTSCALTVHAIGRYSPDVLKNHAKEVLPLAFLGMHEIADEEKAEKEECNLWTEVWQENVPGSFGGIRLYLQELITIAQKALQSQSWKMKAQGAIAMASIAKQTSSLVPPYLGMILTALLQGLAGRTWAGKEELLKAIACVVTACSAELEKPVPNQPSINEILQAVLKECGKENPKYKIVAISCTADVLKATKEDRFQEFADIVIPLIKKNSPESIGVRTSKNEDENEKEKELQLESLLGAFESLGKAWPRNVETQRCYRQELCKLMCERLKLSTWKVQLGVLQSMNAFFQGLMLLEEEHADPEALAEILLETCKSITYSLENKTYSSVRTEALSVIELLLKKLEESKQWESLTSECRVLLIESLATMETDSRPELQEKASLLKKTLENLE", "length": 1809, "header": "tr|F1SNC6-1|A0A287ARA7_PIG Computationally mapped isoform of Proteasome adapter and scaffold protein ECM29 OS=Sus scrofa OX=9823 GN=ECPAS PE=1 SV=4 CANONICAL=A0A287ARA7-1" }, "locus": { "chromosome": "1", "start_pos": 252302332, "end_pos": 252221836, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006004.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006004.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005855.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005855.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum 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}, { "id": "PF11878", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11878", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20421", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20421", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20422", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20422", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983231", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A5R6", "url": "https://www.uniprot.org/uniprotkb/A0A287A5R6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5R6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A686", "url": "https://www.uniprot.org/uniprotkb/A0A287A686", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A686-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A686-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJ01", "url": "https://www.uniprot.org/uniprotkb/A0A287AJ01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJ01-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJ01-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AR72", "url": "https://www.uniprot.org/uniprotkb/A0A287AR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AR72-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVY9", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWG8", "url": "https://www.uniprot.org/uniprotkb/A0A287AWG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWG8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZ64", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZ64-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ64-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN98", "url": "https://www.uniprot.org/uniprotkb/A0A287BN98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN98-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN98-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSS2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LTY2", "url": "https://www.uniprot.org/uniprotkb/I3LTY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LTY2-1", "url": "https://www.uniprot.org/uniprotkb/I3LTY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGPRLRLSDVRPGEQSHGGGSPPQGAHLPLPRDPRCPRAAAFFPRRAPLAKGPAGPAVPPRRPLLRPPRPAPRRTPRPEEAARRAAAEGGWWHGGTAAAAAATRTVAPSEPGRCSERGGPRTPRGAARGVTPSRGRGPGCAARTRGERRGEQAGGGAGSRGRAGPGRAPRAHLAAARPGGTAGAAGAAAVVAKMSQPPLPPASAETRKFTRALSKPGTAAELRQSVSEVVRGSVLLAKPKLIEPLDYENVIVQKKTQILNDCLREMLLFPYDDFQTAILRRQGRYLRSTVPAKAQEEAQSLFVTECIKTYNSDWHLVNYKYEDYSGEFRQLPNKVAKLDKLPVHVYEVDEEVDKDEDAASLGSQKGGITKHGWLYKGNVNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITTLNKILQLNFEAAMQEKRNGDAHEDDDQSRLEGSGSGLDSYLPELAKSAREAEIKLKSESRVKLFYLDPDAQKLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLATTSPSVMNGGRQSSPALQDNPHEAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHGAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDASGNLDKNARFSALYKQDSNKLSNEDMLKFLADFRKPEKMAKLPVILGNLDITIDNVSSDVPNYVNSSYIPMKQFETCAKTPITFEVEEFVPCIPRHTQPHTIYNNHLYVYPKYLKYDSQKTFAKARNIAICIEFKDSDEEDSLPLKCIYGRPGGPLFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLFTFFHVSCDNSSKGSTKKKDVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPPGYLGYQELGMGRHHGPEIKWVDGSKPLLKVSTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGSELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKTMTTILKPSADFLTSNKLLKYSWFFFEVLIKSMAQHLIENSKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYALTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNPGSTVKEESLALPAVNPLVTPQKSGATLDASLHKDLFGAISGIASPYTNSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQGGTLGNSVVRCDKLDQSEIKNLLMCFLYILKSMSDDALFTYWNKASTSELMDFFTISEVCLHQFQYMGKRYIARTGMMHARLQQLGSLDNSLTFNHSYGHSDADVLHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCSALCYEILKYCNSKLSAIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTTFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQPEPPLLPHGHSTCQRRRRGGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVVPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCASAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMARELSEIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTMVHGMTSSSSVV", "length": 2290, "header": "tr|A0A287AVY9-1|A0A287AVY9_PIG Isoform 1 of Dedicator of cytokinesis 9 OS=Sus scrofa OX=9823 GN=DOCK9 PE=1 SV=2 CANONICAL=A0A287AVY9-1" }, "isoforms": [ { "isoform_ac": "A0A287A5R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9/entry#A0A287A5R6-1", "sequence": { "sequence": "MLLWATAILRRQGRYLRSTVPAKAQEEAQSLFVTECIKTYNSDWHLVNYKYEDYSGEFRQLPNKVAKLDKLPVHVYEVDEEVDKDEDAASLGSQKGGITKHGWLYKGNVNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITTLNKILQLNFEAAMQEKRNGDAHEDDDQSRLEGSGSGLDSYLPELAKSAREAEIKLKSESRVKLFYLDPDAQKLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLATTSPSVMNGGRQSSPALQDNPHEAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHGAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDASGNLDKNARFSALYKQDSNKLSNEDMLKFLADFRKPEKMAKLPVILGNLDITIDNVSSDVPNYVNSSYIPMKQFETCAKTPITFEVEEFVPCIPRHTQPHTIYNNHLYVYPKYLKYDSQKTFAKARNIAICIEFKDSDEEDSLPLKCIYGRPGGPLFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLFTFFHVSCDNSSKGSTKKKDVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPPGYLGYQELGMGRHHGPEIKWVDGSKPLLKVSTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGSELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKTMTTILKPSADFLTSNKLLKYSWFFFEVLIKSMAQHLIENSKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYALTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNPGSTVKEESLALPAVNPLVTPQKSGATLDASLHKDLFGAISGIASPYTNSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQGGTLGNSVVRCDKLDQSEIKNLLMCFLYILKSMSDDALFTYWNKASTSELMDFFTISEVCLHQFQYMGKRYIARTGMMHARLQQLGSLDNSLTFNHSYGHSDADVLHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCSALCYEILKYCNSKLSAIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTTFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVVPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCASAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMARELSEIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTMVHGMTSSSSVV", "length": 1993, "header": "tr|A0A287A5R6-1|A0A287AVY9_PIG Computationally mapped isoform of Dedicator of cytokinesis 9 OS=Sus scrofa OX=9823 GN=DOCK9 PE=1 SV=3 CANONICAL=A0A287AVY9-1" }, "locus": { "chromosome": "11", "start_pos": 67904593, "end_pos": 67765154, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064935.2", "url": "https://www.ensembl.org/id/ENSSSCT00000064935.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039206.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039206.2" } ] } }, { "isoform_ac": "A0A287A686-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9/entry#A0A287A686-1", "sequence": { "sequence": "MQADKCRTSGRSVKKELVIESPLQCKDAAQGEVEAESPGPVPAKPKLIEPLDYENVIVQKKTQILNDCLREMLLFPYDDFQTAILRRQGRYLRSTVPAKAQEEAQSLFVTECIKTYNSDWHLVNYKYEDYSGEFRQLPNKVAKLDKLPVHVYEVDEEVDKDEDAASLGSQKGGITKHGWLYKGNVNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITTLNKILQLNFEAAMQEKRNGDAHEDDDQSRLEGSGSGLDSYLPELAKSAREAEIKLKSESRVKLFYLDPDAQKLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLATTSPSVMNGGRQSSPALQDNPHEAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHGAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDASGNLDKNARFSALYKQDSNKLSNEDMLKFLADFRKPEKMAKLPVILGNLDITIDNVSSDVPNYVNSSYIPMKQFETCAKTPITFEVEEFVPCIPRHTQPHTIYNNHLYVYPKYLKYDSQKTFAKARNIAICIEFKDSDEEDSLPLKCIYGRPGGPLFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLFTFFHVSCDNSSKGSTKKKDVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPPGYLGYQELGMGRHHGPEIKWVDGSKPLLKVSTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGSELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKTMTTILKPSADFLTSNKLLKYSWFFFEVLIKSMAQHLIENSKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYALTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNPGSTVKEESLALPAVNPLVTPQKSGATLDASLHKDLFGAISGIASPYTNSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQGGTLGNSVVRCDKLDQSEIKNLLMCFLYILKSMSDDALFTYWNKASTSELMDFFTISEVCLHQFQYMGKRYIASVRKISSVLGISVDNGYGHSDADVLHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCSALCYEILKYCNSKLSAIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTTFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQPEPPLLPHGHSTCQRRRRGGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVVPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCASAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMARELSEIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTMVHGMTSSSSVV", "length": 2087, "header": "tr|A0A287A686-1|A0A287AVY9_PIG Computationally mapped isoform of Dedicator of cytokinesis 9 OS=Sus scrofa OX=9823 GN=DOCK9 PE=1 SV=2 CANONICAL=A0A287AVY9-1" }, "locus": { "chromosome": "11", "start_pos": 67949290, "end_pos": 67765154, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048894.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048894.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039278.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039278.2" } ] } }, { "isoform_ac": "A0A287AJ01-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9/entry#A0A287AJ01-1", "sequence": { "sequence": "MQADKCRTSGRSVKKELVIESPLQCKDAAQGEVEAESPGPVPAKPKLIEPLDYENVIVQKKTQILNDCLREMLLFPYDDFQTAILRRQGRYLRSTVPAKAQEEAQSLFVTECIKTYNSDWHLVNYKYEDYSGEFRQLPNKVAKLDKLPVHVYEVDEEVDKDEDAASLGSQKGGITKHGWLYKGNVNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITTLNKILQLNFEAAMQEKRNGDAHEDDDQSRLEGSGSGLDSYLPELAKSAREAEIKLKSESRVKLFYLDPDAQKLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLATTSPSVMNGGRQSSPALQDNPHEAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHGAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDASGNLDKNARFSALYKQDSNKLSNEDMLKFLADFRKPEKMAKLPVILGNLDITIDNVSSDVPNYVNSSYIPMKQFETCAKTPITFEVEEFVPCIPRHTQPHTIYNNHLYVYPKYLKYDSQKTFAKARNIAICIEFKDSDEEDSLPLKCIYGRPGGPLFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLFTFFHVSCDNSSKGSTKKKDVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPPGYLGYQELGMGRHHGPEIKWVDGSKPLLKVSTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGSELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKTMTTILKPSADFLTSNKLLKYSWFFFEVLIKSMAQHLIENSKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKVRAQVVFCVCVCVCVYTMCACLPRPFSVMSFLTDVISVLISDLQLDYALTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNPGSTVKEESLALPAVNPLVTPQKSGATLDASLHKDLFGAISGIASPYTNSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQGGTLGNSVVRCDKLDQSEIKNLLMCFLYILKSMSDDALFTYWNKASTSELMDFFTISEVCLHQFQYMGKRYIARYRGGLSLRSRYGHSDADVLHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCSALCYEILKYCNSKLSAIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTTFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVVPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCASAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMARELSEIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTMVHGMTSSSSVV", "length": 2060, "header": "tr|A0A287AJ01-1|A0A287AVY9_PIG Computationally mapped isoform of Dedicator of cytokinesis 9 OS=Sus scrofa OX=9823 GN=DOCK9 PE=1 SV=2 CANONICAL=A0A287AVY9-1" }, "locus": { "chromosome": "11", "start_pos": 67949290, "end_pos": 67765154, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065653.2", "url": "https://www.ensembl.org/id/ENSSSCT00000065653.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043869.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043869.2" } ] } }, { "isoform_ac": "A0A287AR72-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9/entry#A0A287AR72-1", "sequence": { "sequence": "MRGPRLRLSDVRPGEQSHGGGSPPQGAHLPLPRDPRCPRAAAFFPRRAPLAKGPAGPAVPPRRPLLRPPRPAPRRTPRPEEAARRAAAEGGWWHGGTAAAAAATRTVAPSEPGRCSERGGPRTPRGAARGVTPSRGRGPGCAARTRGERRGEQAGGGAGSRGRAGPGRAPRAHLAAARPGGTAGAAGAAAVVAKMSQPPLPPASAETRKFTRALSKPGTAAELRQSVSEVVRGSVLLAKPKLIEPLDYENVIVQKKTQILNDCLREMLLFPYDDFQTAILRRQGRYLRSTVPAKAQEEAQSLFVTECIKTYNSDWHLVNYKYEDYSGEFRQLPNKVAKLDKLPVHVYEVDEEVDKDEDAASLGSQKGGITKHGWLYKGNVNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITTLNKILQLNFEAAMQEKRNGDAHEDDDQSRLEGSGSGLDSYLPELAKSAREAEIKLKSESRVKLFYLDPDAQKLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLATTSPSVMNGGRQSSPALQDNPHEAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHGAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDASGNLDKNARFSALYKQDSNKLSNEDMLKFLADFRKPEKMAKLPVILGNLDITIDNVSSDVPNYVNSSYIPMKQFETCAKTPITFEVEEFVPCIPRHTQPHTIYNNHLYVYPKYLKYDSQKTFAKARNIAICIEFKDSDEEDSLPLKCIYGRPGGPLFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLFTFFHVSCDNSSKGSTKKKDVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPPGYLGYQELGMGRHHGPEIKWVDGSKPLLKVSTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGSELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKTMTTILKPSADFLTSNKLLKYSWFFFEVLIKSMAQHLIENSKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYALTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNPGSTVKEESLALPAVNPLVTPQKSGATLDASLHKDLFGAISGIASPYTNSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQGGTLGNSVVRCDKLDQSEIKNLLMCFLYILKSMSDDALFTYWNKASTSELMDFFTISEVCLHQFQYMGKRYIARTGMMHARLQQLGSLDNSLTFNHSYGHSDADVLHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCSALCYEILKYCNSKLSAIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTTFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQPEPPLLPHGHSTCQRRRRGGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQAAQYQFTDSETDVEGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVVPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCASAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMARELSEIMHEQMG", "length": 2266, "header": "tr|A0A287AR72-1|A0A287AR72_PIG Computationally mapped isoform of Dedicator of cytokinesis 9 OS=Sus scrofa OX=9823 GN=DOCK9 PE=1 SV=2 CANONICAL=A0A287AVY9-1" }, "locus": { "chromosome": "11", "start_pos": 68052843, "end_pos": 67766296, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042343.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042343.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046406.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046406.2" } ] } }, { "isoform_ac": "A0A287AVY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9/entry#A0A287AVY9-1", "sequence": { "sequence": "MRGPRLRLSDVRPGEQSHGGGSPPQGAHLPLPRDPRCPRAAAFFPRRAPLAKGPAGPAVPPRRPLLRPPRPAPRRTPRPEEAARRAAAEGGWWHGGTAAAAAATRTVAPSEPGRCSERGGPRTPRGAARGVTPSRGRGPGCAARTRGERRGEQAGGGAGSRGRAGPGRAPRAHLAAARPGGTAGAAGAAAVVAKMSQPPLPPASAETRKFTRALSKPGTAAELRQSVSEVVRGSVLLAKPKLIEPLDYENVIVQKKTQILNDCLREMLLFPYDDFQTAILRRQGRYLRSTVPAKAQEEAQSLFVTECIKTYNSDWHLVNYKYEDYSGEFRQLPNKVAKLDKLPVHVYEVDEEVDKDEDAASLGSQKGGITKHGWLYKGNVNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITTLNKILQLNFEAAMQEKRNGDAHEDDDQSRLEGSGSGLDSYLPELAKSAREAEIKLKSESRVKLFYLDPDAQKLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLATTSPSVMNGGRQSSPALQDNPHEAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHGAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDASGNLDKNARFSALYKQDSNKLSNEDMLKFLADFRKPEKMAKLPVILGNLDITIDNVSSDVPNYVNSSYIPMKQFETCAKTPITFEVEEFVPCIPRHTQPHTIYNNHLYVYPKYLKYDSQKTFAKARNIAICIEFKDSDEEDSLPLKCIYGRPGGPLFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLFTFFHVSCDNSSKGSTKKKDVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPPGYLGYQELGMGRHHGPEIKWVDGSKPLLKVSTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGSELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKTMTTILKPSADFLTSNKLLKYSWFFFEVLIKSMAQHLIENSKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYALTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNPGSTVKEESLALPAVNPLVTPQKSGATLDASLHKDLFGAISGIASPYTNSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQGGTLGNSVVRCDKLDQSEIKNLLMCFLYILKSMSDDALFTYWNKASTSELMDFFTISEVCLHQFQYMGKRYIARTGMMHARLQQLGSLDNSLTFNHSYGHSDADVLHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCSALCYEILKYCNSKLSAIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTTFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQPEPPLLPHGHSTCQRRRRGGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVVPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCASAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMARELSEIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTMVHGMTSSSSVV", "length": 2290, "header": "tr|A0A287AVY9-1|A0A287AVY9_PIG Isoform 1 of Dedicator of cytokinesis 9 OS=Sus scrofa OX=9823 GN=DOCK9 PE=1 SV=2 CANONICAL=A0A287AVY9-1" }, "locus": { "chromosome": "11", "start_pos": 68052843, "end_pos": 67765154, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060404.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060404.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048075.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048075.2" } ] } }, { "isoform_ac": "A0A287AWG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9/entry#A0A287AWG8-1", "sequence": { "sequence": "MQADKCRTSGRSVKKELVIESPLQCKDAAQGEVEAESPGPVPAKPKLIEPLDYENVIVQKKTQILNDCLREMLLFPYDDFQTAILRRQGRYLRSTVPAKAQEEAQSLFVTECIKTYNSDWHLVNYKYEDYSGEFRQLPNKVAKLDKLPVHVYEVDEEVDKDEDAASLGSQKGGITKHGWLYKGNVNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITTLNKILQLNFEAAMQEKRNGDAHEDDDQSRLEGSGSGLDSYLPELAKSAREAEIKLKSESRVKLFYLDPDAQKLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLATTSPSVMNGGRQSSPALQDNPHEAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHGAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDASGNLDKNARFSALYKQDSNKLSNEDMLKFLADFRKPEKMAKLPVILGNLDITIDNVSSDVPNYVNSSYIPMKQFETCAKTPITFEVEEFVPCIPRHTQPHTIYNNHLYVYPKYLKYDSQKTFAKARNIAICIEFKDSDEEDSLPLKCIYGRPGGPLFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLFTFFHVSCDNSSKGSTKKKDVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPPGYLGYQELGMGRHHGPEIKWVDGSKPLLKVSTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGSELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKTMTTILKPSADFLTSNKLLKYSWFFFEVLIKSMAQHLIENSKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYALTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNPGSTVKEESLALPAVNPLVTPQKSGATLDASLHKDLFGAISGIASPYTNSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQGGTLGNSVVRCDKLDQSEIKNLLMCFLYILKSMSDDALFTYWNKASTSELMDFFTISEVCLHQFQYMGKRYIARNQEGLGPIVHDRKSQTLPVSRNRTGMMHARLQQLGSLDNSLTFNHSYGHSDADVLHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCSALCYEILKYCNSKLSAIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTTFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVVPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCASAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMARELSEIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTMVHGMTSSSSVV", "length": 2092, "header": "tr|A0A287AWG8-1|A0A287AWG8_PIG Computationally mapped isoform of Dedicator of cytokinesis 9 OS=Sus scrofa OX=9823 GN=DOCK9 PE=1 SV=3 CANONICAL=A0A287AVY9-1" }, "locus": { "chromosome": "11", "start_pos": 67949290, "end_pos": 67765154, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065095.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065095.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048478.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048478.3" } ] } }, { "isoform_ac": "A0A287AZ64-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9/entry#A0A287AZ64-1", "sequence": { "sequence": "MQADKCRTSGRSVKKELVIESPLQCKDAAQGEVEAESPGPVPAKPKLIEPLDYENVIVQKKTQILNDCLREMLLFPYDDFQTAILRRQGRYLRSTVPAKAQEEAQSLFVTECIKTYNSDWHLVNYKYEDYSGEFRQLPNKVAKLDKLPVHVYEVDEEVDKDEDAASLGSQKGGITKHGWLYKGNVNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITTLNKILQLNFEAAMQEKRNGDAHEDDDQSRLEGSGSGLDSYLPELAKSAREAEIKLKSESRVKLFYLDPDAQKLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLATTSPSVMNGGRQSSPALQDNPHEAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHGAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDASGNLDKNARFSALYKQDSNKLSNEDMLKFLADFRKPEKMAKLPVILGNLDITIDNVSSDVPNYVNSSYIPMKQFETCAKTPITFEVEEFVPCIPRHTQPHTIYNNHLYVYPKYLKYDSQKTFAKARNIAICIEFKDSDEEDSLPLKCIYGRPGGPLFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLFTFFHVSCDNSSKGSTKKKDVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPPGYLGYQELGMGRHHGPEIKWVDGSKPLLKVSTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGSELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKTMTTILKPSADFLTSNKLLKYSWFFFEVLIKSMAQHLIENSKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYALTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNPGSTVKEESLALPAVNPLVTPQKSGATLDASLHKDLFGAISGIASPYTNSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQGGTLGNSVVRCDKLDQSEIKNLLMCFLYILKSMSDDALFTYWNKASTSELMDFFTISEVCLHQFQYMGKRYIARYRGGLSLRSRYGHSDADVLHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCSALCYEILKYCNSKLSAIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTTFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEADLALQPEPPLLPHGHSTCQRRRRGGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVVPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCASAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMARELSEIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTMVHGMTSSSSVV", "length": 2082, "header": "tr|A0A287AZ64-1|A0A287AZ64_PIG Computationally mapped isoform of Dedicator of cytokinesis 9 OS=Sus scrofa OX=9823 GN=DOCK9 PE=1 SV=3 CANONICAL=A0A287AVY9-1" }, "locus": { "chromosome": "11", "start_pos": 67949290, "end_pos": 67765154, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057898.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057898.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049181.3", "url": "https://www.ensembl.org/id/ENSSSCP00000049181.3" } ] } }, { "isoform_ac": "A0A287BN98-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9/entry#A0A287BN98-1", "sequence": { "sequence": "MGCTTSVILFKGIRTVFERNCAYMCKQQGENNALEYTAYNWTKEDSELLISSCLAKPKLIEPLDYENVIVQKKTQILNDCLREMLLFPYDDFQTAILRRQGRYLRSTVPAKAQEEAQSLFVTECIKTYNSDWHLVNYKYEDYSGEFRQLPNKVAKLDKLPVHVYEVDEEVDKDEDAASLGSQKGGITKHGWLYKGNVNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITTLNKILQLNFEAAMQEKRNGDAHEDDDQSRLEGSGSGLDSYLPELAKSAREAEIKLKSESRVKLFYLDPDAQKLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLATTSPSVMNGGRQSSPALQDNPHEAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHGAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDASGNLDKNARFSALYKQDSNKLSNEDMLKFLADFRKPEKMAKLPVILGNLDITIDNVSSDVPNYVNSSYIPMKQFETCAKTPITFEVEEFVPCIPRHTQPHTIYNNHLYVYPKYLKYDSQKTFAKARNIAICIEFKDSDEEDSLPLKCIYGRPGGPLFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLFTFFHVSCDNSSKGSTKKKDVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPPGYLGYQELGMGRHHGPEIKWVDGSKPLLKVSTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGSELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKTMTTILKPSADFLTSNKLLKYSWFFFEVLIKSMAQHLIENSKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYALTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNPGSTVKEESLALPAVNPLVTPQKSGATLDASLHKDLFGAISGIASPYTNSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQGGTLGNSVVRCDKLDQSEIKNLLMCFLYILKSMSDDALFTYWNKASTSELMDFFTISEVCLHQFQYMGKRYIARTGMMHARLQQLGSLDNSLTFNHSYGHSDADVLHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCSALCYEILKYCNSKLSAIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTTFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQQYQFTDSETDVEGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVVPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCASAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMARELSEIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTMVHGMTSSSSVV", "length": 2093, "header": "tr|A0A287BN98-1|A0A287BN98_PIG Computationally mapped isoform of Dedicator of cytokinesis 9 OS=Sus scrofa OX=9823 GN=DOCK9 PE=1 SV=3 CANONICAL=A0A287AVY9-1" }, "locus": { "chromosome": "11", "start_pos": 67985504, "end_pos": 67765154, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060708.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060708.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058090.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058090.3" } ] } }, { "isoform_ac": "A0A5G2QSS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9/entry#A0A5G2QSS2-1", "sequence": { "sequence": "MQADKCRTSGRSVKKELVIESPLQCKDAAQGEVEAESPGPVPAKPKLIEPLDYENVIVQKKTQILNDCLREMLLFPYDDFQTAILRRQGRYLRSTVPAKAQEEAQSLFVTECIKTYNSDWHLVNYKYEDYSGEFRQLPNKVAKLDKLPVHVYEVDEEVDKDEDAASLGSQKGGITKHGWLYKGNVNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITTLNKILQLNFEAAMQEKRNGDAHEDDDQSRLEGSGSGLDSYLPELAKSAREAEIKLKSESRVKLFYLDPDAQKLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLATTSPSVMNGGRQSSPALQDNPHEAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHGAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDASGNLDKNARFSALYKQDSNKLSNEDMLKFLADFRKPEKMAKLPVILGNLDITIDNVSSDVPNYVNSSYIPMKQFETCAKTPITFEVEEFVPCIPRHTQPHTIYNNHLYVYPKYLKYDSQKTFAKARNIAICIEFKDSDEEDSLPLKCIYGRPGGPLFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLFTFFHVSCDNSSKGSTKKKDVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPPGYLGYQELGMGRHHGPEIKWVDGSKPLLKVSTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGSELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKTMTTILKPSADFLTSNKLLKYSWFFFEVLIKSMAQHLIENSKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKVRAQVVFCVCVCVCVYTMCACLPRPFSVMSFLTDVISVLISDLQLDYALTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNPGSTVKEESLALPAVNPLVTPQKSGATLDASLHKDLFGAISGIASPYTNSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQGGTLGNSVVRCDKLDQSEIKNLLMCFLYILKSMSDDALFTYWNKASTSELMDFFTISEVCLHQFQYMGKRYIARYRGGLSLRSRLKNPSACLVCLTDRAVLLCFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCSALCYEILKYCNSKLSAIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTTFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVVPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCASAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMARELSEIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTMVHGMTSSSSVV", "length": 2043, "header": "tr|A0A5G2QSS2-1|A0A287AVY9_PIG Computationally mapped isoform of Dedicator of cytokinesis 9 OS=Sus scrofa OX=9823 GN=DOCK9 PE=1 SV=2 CANONICAL=A0A287AVY9-1" }, "locus": { "chromosome": "11", "start_pos": 67949290, "end_pos": 67765154, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077600.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077600.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065047.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065047.2" } ] } }, { "isoform_ac": "I3LTY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9/entry#I3LTY2-1", "sequence": { "sequence": "MQADKCRTSGRSVKKELVIESPLQCKDAAQGEVEAESPGPVPAKPKLIEPLDYENVIVQKKTQILNDCLREMLLFPYDDFQTAILRRQGRYLRSTVPAKAQEEAQSLFVTECIKTYNSDWHLVNYKYEDYSGEFRQLPNKVAKLDKLPVHVYEVDEEVDKDEDAASLGSQKGGITKHGWLYKGNVNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITTLNKILQLNFEAAMQEKRNGDAHEDDDQSRLEGSGSGLDSYLPELAKSAREAEIKLKSESRVKLFYLDPDAQKLDFSSAEPEVKPFEEKFGKRILVKCNDLSFNLQCCVAENEEGPTTNVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLATTSPSVMNGGRQSSPALQDNPHEAAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHGAEPYMKSSDSSKVAQKVLKNAKQACQRLGQYRMPFAWAARTLFKDASGNLDKNARFSALYKQDSNKLSNEDMLKFLADFRKPEKMAKLPVILGNLDITIDNVSSDVPNYVNSSYIPMKQFETCAKTPITFEVEEFVPCIPRHTQPHTIYNNHLYVYPKYLKYDSQKTFAKARNIAICIEFKDSDEEDSLPLKCIYGRPGGPLFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLFTFFHVSCDNSSKGSTKKKDVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPPGYLGYQELGMGRHHGPEIKWVDGSKPLLKVSTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGSELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKTMTTILKPSADFLTSNKLLKYSWFFFEVLIKSMAQHLIENSKVKLLRNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQAFLSPTVESNDTPVDLQLDYALTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNPGSTVKEESLALPAVNPLVTPQKSGATLDASLHKDLFGAISGIASPYTNSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQGGTLGNSVVRCDKLDQSEIKNLLMCFLYILKSMSDDALFTYWNKASTSELMDFFTISEVCLHQFQYMGKRYIASVRKISSVLGISVDNGYGHSDADVLHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCSALCYEILKYCNSKLSAIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTTFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVVPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCASAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMARELSEIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTMVHGMTSSSSVV", "length": 2075, "header": "tr|I3LTY2-1|A0A287AVY9_PIG Computationally mapped isoform of Dedicator of cytokinesis 9 OS=Sus scrofa OX=9823 GN=DOCK9 PE=1 SV=3 CANONICAL=A0A287AVY9-1" }, "locus": { "chromosome": "11", "start_pos": 67949290, "end_pos": 67765154, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027258.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027258.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027581.3", "url": "https://www.ensembl.org/id/ENSSSCP00000027581.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 132, "start_aa": "Thr", "end_pos": 132, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr132", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSS2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-983231", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "resource": "Reactome", "description": "Factors involved in megakaryocyte development and platelet production" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVY9", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVY9", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9" } ], "pmid": "" }, { "name": "regulation of Rho protein signal transduction", "id": "GO:0035023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035023", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVY9", "url": "https://www.uniprot.org/uniprotkb/A0A287AVY9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1083, "end_pos": 1085, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1216, "end_pos": 1218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1433, "end_pos": 1435, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1570, "end_pos": 1572, "annotation": "n_glycosylation_sequon" }, { "start_pos": 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"n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 195, "end_pos": 197 }, { "start_pos": 70, "end_pos": 72 }, { "start_pos": 73, "end_pos": 75 }, { "start_pos": 85, "end_pos": 87 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AX72-1", "uniprot_ac": "A0A287AX72", "uniprot_id": "A0A287AX72_PIG", "mass": { "chemical_mass": 60328.0, "monoisotopic_mass": 60328.0 }, "refseq": { "ac": "XP_020936744", "name": "NMDA receptor synaptonuclear signaling and neuronal migration factor isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936744" }, "gene_names": [ { "name": "NSMF", "type": "recommended", "evidence": [ { "id": "A0A287AX72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72" } ] }, { "name": "NSMF", "type": "synonym", "evidence": [ { "id": "XP_020936744", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936744" } ] } ], "protein_names": [ { "name": "NMDA receptor synaptonuclear signaling and neuronal migration factor isoform X4", "type": "synonym", "evidence": [ { "id": "XP_020936744", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936744" } ] }, { "name": "NMDA receptor synaptonuclear signaling and neuronal migration factor", "type": "synonym", "evidence": [ { "id": "A0A287AX72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AX72", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NSMF", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72", "locus": {} } ], "crossref": [ { "id": "A0A287AX72", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AX72", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037880", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037880", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100514943", "url": "https://www.ncbi.nlm.nih.gov/gene/100514943", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR033374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058542", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058542", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GRPCKSW", "url": "https://omabrowser.org/oma/group/GRPCKSW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32061", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32061", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24609", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24609", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020936744", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936744", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A632", "url": "https://www.uniprot.org/uniprotkb/A0A287A632", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A632-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A632-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AX72", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AX72-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8X1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8X1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8X1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEV9", "url": "https://www.uniprot.org/uniprotkb/A0A287BEV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R255", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R255", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R255-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R255-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R970", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R970", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R970-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R970-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAVASRRRALRSEAMSSVAAKVRAARAFGEYLSQSHPENRNGADHLLADAYSGHDGSPEMQPAPQNKRRLSLISNGRYEGSLPEEAVRGKPTGEGPQPRVYTISGEPTLLPGPEAEAIELAVVKGRRQRERHPHHHSQPLRASPGGSHEDVSRPCQSWAGSRQGSKECPGCAQLAPSPSPQAFGLDQPPLPEATSRRKKLERMYSVDRVSDDVPIRTWFPKENLFSFQTATTTMQAISVFRGYAERKRRKRENDSASVIQRNFRKHLRMVGSRRVKAQTFAERRERSFSRSWSDPTPMKADTSHDSRDSGDLQSSHCTLGEAFEDLDWETEKGLEAVACDTEGFVPPKVMLISSKVPKAEYLPTIIRRDDPSIIPILYDHEHATFEDILEEIEKKLNVYHKGAKIWKLLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSKVNPEPNVIHVMGCYILGNPNGEKLFQNLRSLMTPYRVTFESPLELSAQGKQMIETYFDFRLYRLWKSRQHSKLLDFEDVL", "length": 532, "header": "tr|A0A287AX72-1|A0A287AX72_PIG Isoform 1 of NMDA receptor synaptonuclear signaling and neuronal migration factor OS=Sus scrofa OX=9823 GN=NSMF PE=4 SV=2 CANONICAL=A0A287AX72-1" }, "isoforms": [ { "isoform_ac": "A0A287A632-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72/entry#A0A287A632-1", "sequence": { "sequence": "MGAVASRRRALRSEAMSSVAAKVRAARAFGEYLSQSHPENRNGADHLLADAYSGHDGSPEMQPAPQNKRRLSLISNGRYEGSLPEEAVRGKPTGEGPQPRVYTISGEPTLLPGPEAEAIELAVVKGRRQRERHPHHHSQPLRASPGGSHEDVSRPCQSWAGSRQGSKECPGCAQLAPSPSPQAFGLDQPPLPEATSRRKKLERMYSVDRVSDDVPIRTWFPKENLFSFQTATTTMQANFRKHLRMVGSRRVKAQTFAERRERSFSRSWSDPTPMKADTSHDSRDSGDLQSSHCTLGEAFEDLDWETEKGLEAVACDTEGFVPPKVMLISSKVPKAEYLPTIIRRDDPSIIPILYDHEHATFEDILEEIEKKLNVYHKGAKIWKLLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSKVNPEPNVIHVMGCYILGNPNGEKLFQNLRSLMTPYRVTFESPLELSAQGKQMIETYFDFRLYRLWKSRQHSKLLDFEDVL", "length": 507, "header": "tr|A0A287A632-1|A0A287AX72_PIG Computationally mapped isoform of NMDA receptor synaptonuclear signaling and neuronal migration factor OS=Sus scrofa OX=9823 GN=NSMF PE=4 SV=2 CANONICAL=A0A287AX72-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 511061, "end_pos": 503550, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048685.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048685.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039403.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039403.2" } ] } }, { "isoform_ac": "A0A287AX72-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72/entry#A0A287AX72-1", "sequence": { "sequence": "MGAVASRRRALRSEAMSSVAAKVRAARAFGEYLSQSHPENRNGADHLLADAYSGHDGSPEMQPAPQNKRRLSLISNGRYEGSLPEEAVRGKPTGEGPQPRVYTISGEPTLLPGPEAEAIELAVVKGRRQRERHPHHHSQPLRASPGGSHEDVSRPCQSWAGSRQGSKECPGCAQLAPSPSPQAFGLDQPPLPEATSRRKKLERMYSVDRVSDDVPIRTWFPKENLFSFQTATTTMQAISVFRGYAERKRRKRENDSASVIQRNFRKHLRMVGSRRVKAQTFAERRERSFSRSWSDPTPMKADTSHDSRDSGDLQSSHCTLGEAFEDLDWETEKGLEAVACDTEGFVPPKVMLISSKVPKAEYLPTIIRRDDPSIIPILYDHEHATFEDILEEIEKKLNVYHKGAKIWKLLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSKVNPEPNVIHVMGCYILGNPNGEKLFQNLRSLMTPYRVTFESPLELSAQGKQMIETYFDFRLYRLWKSRQHSKLLDFEDVL", "length": 532, "header": "tr|A0A287AX72-1|A0A287AX72_PIG Isoform 1 of NMDA receptor synaptonuclear signaling and neuronal migration factor OS=Sus scrofa OX=9823 GN=NSMF PE=4 SV=2 CANONICAL=A0A287AX72-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 511061, "end_pos": 503550, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049840.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049840.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048491.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048491.2" } ] } }, { "isoform_ac": "A0A287B8X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72/entry#A0A287B8X1-1", "sequence": { "sequence": "MGAVASRRRALRSEAMSSVAAKVRAARAFGEYLSQSHPENRNGADHLLADAYSGHDGSPEMQPAPQNKRRLSLISNGRYEGSLPEEAVRGKPTGEGPQPRVYTISGEPTLLPGPEAEAIELAVVKGRRQRERHPHHHSQPLRASPGGSHEDVSRPCQSWAGSRQGSKECPGCAQLAPSPSPQAFGLDQPPLPEATSRRKKLERMYSVDRVSDDVPIRTWFPKENLFSFQTATTTMQAVFRGYAERKRRKRENDSASVIQRNFRKHLRMVGSRRVKAQTFAERRERSFSRSWSDPTPMKADTSHDSRDSGDLQSSHCTLGEAFEDLDWETEKGLEAVACDTEGFVPPKVMLISSKVPKAEYLPTIIRRDDPSIIPILYDHEHATFEDILEEIEKKLNVYHKGAKIWKLLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSKVNPEPNVIHVMGCYILGNPNGEKLFQNLRSLMTPYRVTFESPLELSAQGKQMIETYFDFRLYRLWKSRQHSKLLDFEDVL", "length": 530, "header": "tr|A0A287B8X1-1|A0A287B8X1_PIG Computationally mapped isoform of NMDA receptor synaptonuclear signaling and neuronal migration factor OS=Sus scrofa OX=9823 GN=NSMF PE=4 SV=1 CANONICAL=A0A287AX72-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 511061, "end_pos": 503550, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049856.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049856.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052971.1", "url": "https://www.ensembl.org/id/ENSSSCP00000052971.1" } ] } }, { "isoform_ac": "A0A287BEV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72/entry#A0A287BEV9-1", "sequence": { "sequence": "MGAVASRRRALRSEAMSSVAAKVRAARAFGEYLSQSHPENRNGADHLLADAYSGHDGSPEMQPAPQNKRRLSLISNGRYEGSLPEEAVRGKPTGEGPQPRVYTISGEPTLLPGPEAEAIELAVVKGRRQRERHPHHHSQPLRASPGGSHEDVSRPCQSWAGSRQGSKECPGCAQLAPSPSPQAFGLDQPPLPEATSRRKKLERMYSVDRVSDDVPIRTWFPKENLFSFQTATTTMQAISVFRGYAERKRRKRENDSASVIQRNFRKHLRMVGSRRVKAQSGDLQSSHCTLGEAFEDLDWETEKGLEAVACDTEGFVPPKVMLISSKVPKAEYLPTIIRRDDPSIIPILYDHEHATFEDILEEIEKKLNVYHKGAKIWKLLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSKVNPEPNVIHVMGCYILGNPNGEKLFQNLRSLMTPYRVTFESPLELSAQGKQMIETYFDFRLYRLWKSRQHSKLLDFEDVL", "length": 502, "header": "tr|A0A287BEV9-1|A0A287BEV9_PIG Computationally mapped isoform of NMDA receptor synaptonuclear signaling and neuronal migration factor OS=Sus scrofa OX=9823 GN=NSMF PE=4 SV=2 CANONICAL=A0A287AX72-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 511061, "end_pos": 503550, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053395.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053395.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054660.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054660.2" } ] } }, { "isoform_ac": "A0A5G2R255-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72/entry#A0A5G2R255-1", "sequence": { "sequence": "MGAVASRRRALRSEAMSSVAAKVRAARAFGEYLSQSHPENRNGADHLLADAYSGHDGEPTLLPGPEAEAIELAVVKGRRQRERHPHHHSQPLRASPGGSHEDVSRPCQSWAGSRQGSKECPGCAQLAPSPSPQAFGLDQPPLPEATSRRKKLERMYSVDRVSDDVPIRTWFPKENLFSFQTATTTMQAVFRGYAERKRRKRENDSASVIQRNFRKHLRMVGSRRVKAQTFAERRERSFSRSWSDPTPMKADTSHDSRDSGDLQSSHCTLGEAFEDLDWETEKGLEAVACDTEGFVPPKVMLISSKVPKAEYLPTIIRRDDPSIIPILYDHEHATFEDILEEIEKKLNVYHKGAKIWKLLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSKVNPEPNVIHVMGCYILGNPNGEKLFQNLRSLMTPYRVTFESPLELSAQGKQMIETYFDFRLYRLWKSRQHSKLLDFEDVL", "length": 481, "header": "tr|A0A5G2R255-1|A0A287AX72_PIG Computationally mapped isoform of NMDA receptor synaptonuclear signaling and neuronal migration factor OS=Sus scrofa OX=9823 GN=NSMF PE=4 SV=1 CANONICAL=A0A287AX72-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 511061, "end_pos": 503550, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070485.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070485.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070430.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070430.1" } ] } }, { "isoform_ac": "A0A5G2R970-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72/entry#A0A5G2R970-1", "sequence": { "sequence": "MGAVASRRRALRSEAMSSVAAKVRAARAFGEYLSQSHPENRNGADHLLADAYSGHDGSPEMQPAPQNKRRLSLISNGRYEGSLPEEAVRGKPTGEGPQPRVYTISGEPTLLPGPEAEAIELAVVKGRRQRERHPHHHSQPLRASPGGSHEDVSRPCQSWAGSRQGSKECPGCAQLAPSPSPQAFGLDQPPLPEATSRRKKLERMYSVDRVSDDVPIRTWFPKENLFSFQTATTTMQAISNFRKHLRMVGSRRVKAQTFAERRERSFSRSWSDPTPMKADTSHDSRDSGDLQSSHCTLGEAFEDLDWETEKGLEAVACDTEGFVPPKVMLISSKVPKAEYLPTIIRRDDPSIIPILYDHEHATFEDILEEIEKKLNVYHKGAKIWKLLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSKVNPEPNVIHVMGCYILGNPNGEKLFQNLRSLMTPYRVTFESPLELSAQGKQMIETYFDFRLYRLWKSRQHSKLLDFEDVL", "length": 509, "header": "tr|A0A5G2R970-1|A0A287AX72_PIG Computationally mapped isoform of NMDA receptor synaptonuclear signaling and neuronal migration factor OS=Sus scrofa OX=9823 GN=NSMF PE=4 SV=1 CANONICAL=A0A287AX72-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 511061, "end_pos": 503550, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068864.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068864.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073833.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073833.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R255", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R255" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MJD7-1", "protein_name": "NMDA receptor synaptonuclear signaling and neuronal migration factor isoform X1", "gene_name": "Nsmf", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGAAASRRRALRSEAMSSVAAKVRAARAFGEYLSQSHPENRNGADHLLADAYSGHDGSPEMQPAPQNKRRLSLVSNGRYEGSISDEAVSGKPATEGPQPRVYTISREPALLPSSEAEAIELAVVKGRRQRERHPHHHSQPLRASPGSSREDVSRPCQSWAGSRQGSKECPGCAQLAPGPSPRAFGLEQPPLPEASGRHKHLERMYSVDRVSDDVPIRTWFPKENLFSFQTATTTMQAISVFRGYAERKRRKRENDSASVIQRNFRKHLRMVGSRRVKAQTFAERRERSFSRSWSDPTPMKADTSHDSRDSSDLQSSHCTLDEACEDLDWDTEKGLEAMACDTEGFLPPKVMLISSKVPKAEYIPTIIRRDDPSIIPILYDHEHATFEDILEEIEKKLNIYHKGAKIWKMLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSKVNPEPNVIHIMGCYILGNPNGEKLFQNLRTLMTPYKVTFESPLELSAQGKQMIETYFDFRLYRLWKSRQHSKLLDFDDVL", "length": 532 }, "evidence": [ { "id": "A0A287AX72", "url": "https://omabrowser.org/oma/group/A0A287AX72/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6X4W1-1", "protein_name": "NMDA receptor synaptonuclear signaling and neuronal migration factor", "gene_name": "NSMF", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGAAASRRRALRSEAMSSVAAKVRAARAFGEYLSQSHPENRNGADHLLADAYSGHDGSPEMQPAPQNKRRLSLVSNGCYEGSLSEEPSIRKPAGEGPQPRVYTISGEPALLPSPEAEAIELAVVKGRRQRHPHHHSQPLRASPGGSREDVSRPCQSWAGSRQGSKECPGCAQLAPGPTPRAFGLDQPPLPETSGRRKKLERMYSVDRVSDDIPIRTWFPKENLFSFQTATTTMQAISVFRGYAERKRRKRENDSASVIQRNFRKHLRMVGSRRVKAQTFAERRERSFSRSWSDPTPMKADTSHDSRDSSDLQSSHCTLDEAFEDLDWDTEKGLEAVACDTEGFVPPKVMLISSKVPKAEYIPTIIRRDDPSIIPILYDHEHATFEDILEEIERKLNVYHKGAKIWKMLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSKVNPEPNVIHIMGCYILGNPNGEKLFQNLRTLMTPYRVTFESPLELSAQGKQMIETYFDFRLYRLWKSRQHSKLLDFDDVL", "length": 530 }, "evidence": [ { "id": "A0A287AX72", "url": "https://omabrowser.org/oma/group/A0A287AX72/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99NF2-1", "protein_name": "NMDA receptor synaptonuclear signaling and neuronal migration factor", "gene_name": "Nsmf", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGAAASRRRALRSEAMSSVAAKVRAARAFGEYLSQSHPENRNGADHLLADAYSGHDGSPEMQPAPQNKRRLSLVSNGRYEGSISDEAVSGKPAIEGPQPHVYTISREPALLPGSEAEAIELAVVKGRRQRERHPHHHSQPLRASPGSSREDISRPCQSWAGSRQGSKECPGCAQLVPGPSSRAFGLEQPPLPEAPGRHKKLERMYSVDGVSDDVPIRTWFPKENLFSFQTATTTMQAISVFRGYAERKRRKRENDSASVIQRNFRKHLRMVGSRRVKAQTFAERRERSFSRSWSDPTPMKADTSHDSRDSSDLQSSHCTLDEACEDLDWDTEKGLEAMACNTEGFLPPKVMLISSKVPKAEYIPTIIRRDDPSIIPILYDHEHATFEDILEEIEKKLNIYHKGAKIWKMLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSKVNPEPNVIHIMGCYILGNPNGEKLFQNLRTLMTPYKVTFESPLELSAQGKQMIETYFDFRLYRLWKSRQHSKLLDFDDVL", "length": 532 }, "evidence": [ { "id": "A0A287AX72", "url": "https://omabrowser.org/oma/group/A0A287AX72/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPI6-1", "protein_name": "NMDA receptor synaptonuclear signaling and neuronal migration factor", "gene_name": "Nsmf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAAASRRRALRSEAMSSVAAKVRAARAFGEYLSQSHPENRNGADHLLADAYSGHEGSPEMQPAPHNKRRLSLVSNGRYEGSISDEAVSGKTATEGPQPRVYTISREPALLPGSEAEAIELAVVKGRRQRERHPHHHSQPLRASPGSSREDISRPCQSWAGSRQGSKECPGCAKLVPGPSPRAFGLEQPPLPEASGRHKKLERMYSVDGVSDDVPIRTWFPKENPFSFQTATTTMQAISVFRGYAERKRRKRENDSASVIQRNFRKHLRMVGSRRVKAQTFAERRERSFSRSWSDPTPMKADTSHDSRDSSDLQSSHCTLDEACEDLDWDTEKGLEATACDTEGFLPPKVMLISSKVPKAEYIPTIIRRDDPSIIPILYDHEHATFEDILEEIEKKLNIYHKGAKIWKMLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSKVNPEPNVIHIMGCYILGNPNGEKLFQNLRTLMTPYKVTFESPLELSAQGKQMIETYFDFRLYRLWKSRQHSKLLDFDDVL", "length": 532 }, "evidence": [ { "id": "A0A287AX72", "url": "https://omabrowser.org/oma/group/A0A287AX72/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of neuronal synaptic plasticity", "id": "GO:0048168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048168", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX72", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72" } ], "pmid": "" }, { "name": "regulation of neuron migration", "id": "GO:2001222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001222", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX72", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72" } ], "pmid": "" }, { "name": "cellular response to gonadotropin stimulus", "id": "GO:0071371", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071371", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX72", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72" } ], "pmid": "" }, { "name": "positive regulation of neuron migration", "id": "GO:2001224", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001224", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX72", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX72", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX72", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX72", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX72", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AX72-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 532, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AX72-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AX72" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AX72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX72" }, { "id": "PF24609", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24609" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SCN5A-like C-terminal IQ motif", "eco_id": "ECO_0000259", "start_pos": 249, "end_pos": 275, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 254, "end_pos": 256 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ATS4-1", "uniprot_ac": "A0A287ATS4", "uniprot_id": "A0A287ATS4_PIG", "mass": { "chemical_mass": 92284.0, "monoisotopic_mass": 92284.0 }, "refseq": { "ac": "XP_013845082", "name": "rab GTPase-activating protein 1-like isoform X2", "summary": "", "url": 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RAB22A-GDP. Plays a role in endocytosis and intracellular protein transport. Recruited by ANK2 to phosphatidylinositol 3-phosphate (PI3P)-positive early endosomes, where it inactivates RAB22A, and promotes polarized trafficking to the leading edge of the migrating cells. Part of the ANK2/RABGAP1L complex which is required for the polarized recycling of fibronectin receptor ITGA5 ITGB1 to the plasma membrane that enables continuous directional cell migration.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXU8#function" }, { "database": "UniProtKB", "id": "ARBA00059592", "url": "https://www.uniprot.org/uniprotkb/ARBA00059592#function" }, { "database": "UniProtKB", "id": "A0A5G2QZ27", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ27#function" }, { "database": "UniProtKB", "id": "A0A287AJY3", "url": "https://www.uniprot.org/uniprotkb/A0A287AJY3#function" }, { "database": "UniProtKB", "id": "A0A287ATS4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATS4#function" }, { "database": "UniProtKB", "id": "A0A287B789", "url": "https://www.uniprot.org/uniprotkb/A0A287B789#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], 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"Protein Classification" ] }, { "id": "100519968", "url": "https://www.ncbi.nlm.nih.gov/gene/100519968", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519968", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519968", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BPS2", "url": "https://www.orthodb.org/?gene=A0A287BPS2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8W4FAZ0", "url": "https://www.orthodb.org/?gene=A0A8W4FAZ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47728", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47728", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47728:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47728:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12473", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12473", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23436", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23436", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013845082", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013845082", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A8Y2", "url": "https://www.uniprot.org/uniprotkb/A0A287A8Y2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8Y2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJY3", "url": "https://www.uniprot.org/uniprotkb/A0A287AJY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ATS4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ATS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATS4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B789", "url": "https://www.uniprot.org/uniprotkb/A0A287B789", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B789-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B789-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BPS2", "url": "https://www.uniprot.org/uniprotkb/A0A287BPS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BPS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPS2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXU8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ27", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ27-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAZ0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLE4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLE4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVRASSQKVSGSSDSVTTPNSEEFVLVPQHADDTSTKDDEKPELKIVSNGDEQLEKAMEEILRDSEKGQSSLLVDCPSSSEISDHSFGDVSASQPNKPSLQLILDPSNTEITPRPSSPSGIPEEDSVLFNKLTYLGCMKVSSPRNEVEALRAMATMKSSSQYPFPVTLYVPNVPEGSVRIIDQSNNVEIASFPIYKVLFCARGHDGTAESNCFAFTESSHGSEEFQIHVFSCEIKEAVSRILYSFCTAFKRSSRQVSDVKDPVIPTPDSDVFTFSVSLEVKEDDGKGNFSPVPKDRDKFYFKLKQGIEKKVVITVQQLSNKELAIERCFGMLLSPGRNVKNSDMHLLDMESMGKSYDGRAYVITGMWNPNAPIFLALNEETPKDKRVYMTVAVDMVVTEVVEPVRFLLETVVRVYPANERFWYFSRKTFTETFFMRLKQSEGKGHTNAGDAIYEVVSLQRESEKEEPVTPTSGGGPLSPQEDEAEEESDNELSSGTGDVSKDCPEKILYSWGELLGRWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRLLITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYKNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKFVYL", "length": 814, "header": "tr|A0A287ATS4-1|A0A287ATS4_PIG Isoform 1 of Rab GTPase-activating protein 1-like OS=Sus scrofa OX=9823 GN=RABGAP1L PE=4 SV=1 CANONICAL=A0A287ATS4-1" }, "isoforms": [ { "isoform_ac": "A0A287A8Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATS4/entry#A0A287A8Y2-1", "sequence": { "sequence": "MMEEISIMVAYDAHVFSQLHDEDLLTSLVAISKPRSMVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKRENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKMMACKHCSDIFSKEGALKVAAISREDQGIESDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPPQATQPPKEST", "length": 308, "header": "tr|A0A287A8Y2-1|A0A287ATS4_PIG Computationally mapped isoform of Rab GTPase-activating protein 1-like OS=Sus scrofa OX=9823 GN=RABGAP1L PE=4 SV=3 CANONICAL=A0A287ATS4-1" }, "locus": { "chromosome": "9", "start_pos": 117055057, "end_pos": 116966202, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053070.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053070.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040454.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040454.3" } ] } }, { "isoform_ac": "A0A287AJY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATS4/entry#A0A287AJY3-1", "sequence": { "sequence": "MEVRASSQKVSGSSDSVTTPNSEEFVLVPQHADDTSTKDDEKPELKIVSNGDEQLEKAMEEILRDSEKGQSSLLVDCPSSSEISDHSFGDVSASQPNKPSLQLILDPSNTEITPRPSSPSGIPEEDSVLFNKLTYLGCMKVSSPRNEVEALRAMATMKSSSQYPFPVTLYVPNVPEGSVRIIDQSNNVEIASFPIYKVLFCARGHDGTAESNCFAFTESSHGSEEFQIHVFSCEIKEAVSRILYSFCTAFKRSSRQVSDVKDPVIPTPDSDVFTFSVSLEVKEDDGKGNFSPVPKDRDKFYFKLKQGIEKKVVITVQQLSNKELAIERCFGMLLSPGRNVKNSDMHLLDMESMGKSYDGRAYVITGMWNPNAPIFLALNEETPKDKRVYMTVAVDMVVTEVVEPVRFLLETVVRVYPANERFWYFSRKTFTETFFMRLKQSEGKGHTNAGDAIYEVVSLQRESEKEEPVTPTSGGGPLSPQEDEAEEESDNELSSGTGDVSKDCPEKILYSWGELLGRWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRLLITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYKNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKRENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKMMACKHCSDIFSKEGALKVAAISREDQGIESDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQKWKFSV", "length": 1006, "header": "tr|A0A287AJY3-1|A0A287ATS4_PIG Computationally mapped isoform of Rab GTPase-activating protein 1-like OS=Sus scrofa OX=9823 GN=RABGAP1L PE=4 SV=3 CANONICAL=A0A287ATS4-1" }, "locus": { "chromosome": "9", "start_pos": 117053599, "end_pos": 116471260, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059537.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059537.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044210.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044210.3" } ] } }, { "isoform_ac": "A0A287ATS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATS4/entry#A0A287ATS4-1", "sequence": { "sequence": "MEVRASSQKVSGSSDSVTTPNSEEFVLVPQHADDTSTKDDEKPELKIVSNGDEQLEKAMEEILRDSEKGQSSLLVDCPSSSEISDHSFGDVSASQPNKPSLQLILDPSNTEITPRPSSPSGIPEEDSVLFNKLTYLGCMKVSSPRNEVEALRAMATMKSSSQYPFPVTLYVPNVPEGSVRIIDQSNNVEIASFPIYKVLFCARGHDGTAESNCFAFTESSHGSEEFQIHVFSCEIKEAVSRILYSFCTAFKRSSRQVSDVKDPVIPTPDSDVFTFSVSLEVKEDDGKGNFSPVPKDRDKFYFKLKQGIEKKVVITVQQLSNKELAIERCFGMLLSPGRNVKNSDMHLLDMESMGKSYDGRAYVITGMWNPNAPIFLALNEETPKDKRVYMTVAVDMVVTEVVEPVRFLLETVVRVYPANERFWYFSRKTFTETFFMRLKQSEGKGHTNAGDAIYEVVSLQRESEKEEPVTPTSGGGPLSPQEDEAEEESDNELSSGTGDVSKDCPEKILYSWGELLGRWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRLLITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYKNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKFVYL", "length": 814, "header": "tr|A0A287ATS4-1|A0A287ATS4_PIG Isoform 1 of Rab GTPase-activating protein 1-like OS=Sus scrofa OX=9823 GN=RABGAP1L PE=4 SV=1 CANONICAL=A0A287ATS4-1" }, "locus": { "chromosome": "9", "start_pos": 117025969, "end_pos": 116471260, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063552.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063552.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047269.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047269.1" } ] } }, { "isoform_ac": "A0A287B789-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATS4/entry#A0A287B789-1", "sequence": { "sequence": "MVDVGREVCRTEMEVRASSQKVSGSSDSVTTPNSEEFVLVPQHADDTSTKDDEKPELKIVSNGDEQLEKAMEEILRDSEKGQSSLLVDCPSSSEISDHSFGDVSASQPNKPSLQLILDPSNTEITPRPSSPSGIPEEDSVLFNKLTYLGCMKVSSPRNEVEALRAMATMKSSSQYPFPVTLYVPNVPEGSVRIIDQSNNVEIASFPIYKVLFCARGHDGTAESNCFAFTESSHGSEEFQIHVFSCEIKEAVSRILYSFCTAFKRSSRQVSDVKDPVIPTPDSDVFTFSVSLEVKEDDGKGNFSPVPKDRDKFYFKLKQGIEKKVVITVQQLSNKELAIERCFGMLLSPGRNVKNSDMHLLDMESMGKSYDGRAYVITGMWNPNAPIFLALNEETPKDKRVYMTVAVDMVVTEVVEPVRFLLETVVRVYPANERFWYFSRKTFTETFFMRLKQSEGKGHTNAGDAIYEVVSLQRESEKEEPVTPTSGGGPLSPQEDEAEEESDNELSSGTGDVSKDCPEKILYSWGELLGRWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRLLITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYKNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKRENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKMMACKHCSDIFSKEGALKVAAISREDQGIESDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPPQATQPPKEST", "length": 1062, "header": "tr|A0A287B789-1|A0A287B789_PIG Computationally mapped isoform of Rab GTPase-activating protein 1-like OS=Sus scrofa OX=9823 GN=RABGAP1L PE=4 SV=2 CANONICAL=A0A287ATS4-1" }, "locus": { "chromosome": "9", "start_pos": 117055057, "end_pos": 116463912, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060873.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060873.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052170.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052170.2" } ] } }, { "isoform_ac": "A0A287BPS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATS4/entry#A0A287BPS2-1", "sequence": { "sequence": "MEEGVPCPAPAAKLTPPVKKSQDMHDERSKLVNEYACRVLELLGMGHRLFVPRLLATSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKRENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKMMACKHCSDIFSKEGALKVAAISREDQGIESDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPPQATQPPKEST", "length": 370, "header": "tr|A0A287BPS2-1|A0A287BPS2_PIG Computationally mapped isoform of RAB GTPase activating protein 1 like OS=Sus scrofa OX=9823 GN=RABGAP1L PE=4 SV=1 CANONICAL=A0A287ATS4-1" }, "locus": { "chromosome": "9", "start_pos": 117055057, "end_pos": 116911432, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066062.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066062.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058101.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058101.1" } ] } }, { "isoform_ac": "A0A5G2QXU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATS4/entry#A0A5G2QXU8-1", "sequence": { "sequence": "MEVRASSQKVSGSSDSVTTPNSEEFVLVPQHADDTSTKDDEKPELKIVSNGDEQLEKAMEEILRDSEKGQSSLLVDCPSSSEISDHSFGDVSASQPNKPSLQLILDPSNTEITPRPSSPSGIPEEDSVLFNKLTYLGCMKVSSPRNEVEALRAMATMKSSSQYPFPVTLYVPNVPEGSVRIIDQSNNVEIASFPIYKVLFCARGHDGTAESNCFAFTESSHGSEEFQIHVFSCEIKEAVSRILYSFCTAFKRSSRQVSDVKDPVIPTPDSDVFTFSVSLEVKEDDGKGNFSPVPKDRDKFYFKLKQGIEKKVVITVQQLSNKELAIERCFGMLLSPGRNVKNSDMHLLDMESMGKSYDGRAYVITGMWNPNAPIFLALNEETPKDKRVYMTVAVDMVVTEVVEPVRFLLETVVRVYPANERFWYFSRKTFTETFFMRLKQSEGKGHTNAGDAIYEVVSLQRESEKEEPVTPTSGGGPLSPQEDEAEEESDNELSSGTGDVSKDCPEKILYSWGELLGRWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRLLITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYKNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKKYSERKKESFFFFSYFRR", "length": 797, "header": "tr|A0A5G2QXU8-1|A0A287ATS4_PIG Computationally mapped isoform of Rab GTPase-activating protein 1-like OS=Sus scrofa OX=9823 GN=RABGAP1L PE=4 SV=1 CANONICAL=A0A287ATS4-1" }, "locus": { "chromosome": "9", "start_pos": 116965607, "end_pos": 116471260, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069738.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069738.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063032.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063032.1" } ] } }, { "isoform_ac": "A0A5G2QZ27-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATS4/entry#A0A5G2QZ27-1", "sequence": { "sequence": "MEVRASSQKVSGSSDSVTTPNSEEFVLVPQHADDTSTKDDEKPELKIVSNGDEQLEKAMEEILRDSEKGQSSLLVDCPSSSEISDHSFGDVSASQPNKPSLQLILDPSNTEITPRPSSPSGIPEEDSVLFNKLTYLGCMKVSSPRNEVEALRAMATMKSSSQYPFPVTLYVPNVPEGSVRIIDQSNNVEIASFPIYKVLFCARGHDGTAESNCFAFTESSHGSEEFQIHVFSCEIKEAVSRILYSFCTAFKRSSRQVSDVKDPVIPTPDSDVFTFSVSLEVKEDDGKGNFSPVPKDRDKFYFKLKQGIEKKVVITVQQLSNKELAIERCFGMLLSPGRNVKNSDMHLLDMESMGKSYDGRAYVITGMWNPNAPIFLALNEETPKDKRVYMTVAVDMVVTEVVEPVRFLLETVVRVYPANERFWYFSRKTFTETFFMRLKQSEGKGHTNAGDAIYEVVSLQRESEKEEPVTPTSGGGPLSPQEDEAEEESDNELSSGTGDVSKDCPEKILYSWGELLGRWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRLLITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYKNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEHGCWILTMFKMMWYVN", "length": 789, "header": "tr|A0A5G2QZ27-1|A0A287ATS4_PIG Computationally mapped isoform of Rab GTPase-activating protein 1-like OS=Sus scrofa OX=9823 GN=RABGAP1L PE=4 SV=1 CANONICAL=A0A287ATS4-1" }, "locus": { "chromosome": "9", "start_pos": 116918897, "end_pos": 116471260, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071543.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071543.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063490.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063490.1" } ] } }, { "isoform_ac": "A0A8W4FAZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATS4/entry#A0A8W4FAZ0-1", "sequence": { "sequence": "MIENGSGSMTFEERENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKMMACKHCSDIFSKEGALKVAAISREDQGIESDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPPQATQPPKEST", "length": 253, "header": "tr|A0A8W4FAZ0-1|A0A287ATS4_PIG Computationally mapped isoform of Rab GTPase-activating protein 1-like OS=Sus scrofa OX=9823 GN=RABGAP1L PE=4 SV=1 CANONICAL=A0A287ATS4-1" }, "locus": { "chromosome": "9", "start_pos": 117055057, "end_pos": 117032856, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105616.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105616.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076566.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076566.1" } ] } }, { "isoform_ac": "A0A8W4FLE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATS4/entry#A0A8W4FLE4-1", "sequence": { "sequence": "TKEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKRENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKMMACKHCSDIFSKEGALKVAAISREDQGIESDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPPQATQPPKEST", "length": 378, "header": "tr|A0A8W4FLE4-1|A0A287ATS4_PIG Computationally mapped isoform of Rab GTPase-activating protein 1-like OS=Sus scrofa OX=9823 GN=RABGAP1L PE=4 SV=1 CANONICAL=A0A287ATS4-1" }, "locus": { "chromosome": "9", "start_pos": 117055057, "end_pos": 116828686, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092368.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092368.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079728.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079728.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 267, "start_aa": "Thr", "end_pos": 267, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr267", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 472, "start_aa": "Thr", "end_pos": 472, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr472", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXU8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519968", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519968", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATS4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATS4" } ], "pmid": "" }, { "name": "small GTPase binding", 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} ] }, { "uniprot_canonical_ac": "A0A287AX90-1", "uniprot_ac": "A0A287AX90", "uniprot_id": "A0A287AX90_PIG", "mass": { "chemical_mass": 71307.0, "monoisotopic_mass": 71307.0 }, "refseq": {}, "gene_names": [ { "name": "ANKS3", "type": "recommended", "evidence": [ { "id": "A0A287AX90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX90" } ] } ], "protein_names": [ { "name": "Ankyrin repeat and sterile alpha motif domain containing 3", "type": "synonym", "evidence": [ { "id": "A0A287AX90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX90/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays a central role during spermatogenesis by repressing transposable elements and preventing their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and governs the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in the regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL1#function" }, { "database": "UniProtKB", "id": "ARBA00025297", "url": "https://www.uniprot.org/uniprotkb/ARBA00025297#function" }, { "database": "UniProtKB", "id": "A0A287ABU8", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU8#function" }, { "database": "UniProtKB", "id": "A0A287AX90", "url": "https://www.uniprot.org/uniprotkb/A0A287AX90#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AX90", "url": "https://www.uniprot.org/uniprotkb/A0A287AX90" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKS3", "url": "https://www.uniprot.org/uniprotkb/A0A287AX90", "locus": { "chromosome": "3", "start_pos": 37689500, "end_pos": 37650256, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007939", "url": "https://www.ensembl.org/id/ENSSSCG00000007939" } ] } } ], "crossref": [ { "id": "A0A287AX90", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AX90", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007939", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007939", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09519", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09519", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ABU8", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AX90", "url": "https://www.uniprot.org/uniprotkb/A0A287AX90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AX90-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX90-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSELSDEASEPELLNRSLSMWHGLGAQVSREELAVPLDLHTAASVGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLDSGANANVREPVYGFTPLMEAAAAGHEIIVQYFLNHGVKVDTRDHSGATARMLAKQYGHMKIVGLLDAHSASLPKSLYRSPEKYEDLSSSDESCPVPQRQRPCRKKGLSIHDGPRALARITAIGLGGRTRQPRYEQVLPRGYVTFNSSDESPLGERGLCYRDVTSPINDRDVESSSSSSREEHTFCANLGAARSSSSSEGLARAPGLSSEASLESNEDSDHARKSLVRKQTKSYLKAKNRHSSSDSQWSPSTGTSCAPGSVPQTDRAPYSGPQDLAALLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKRCEEVEAMRGQVSQEQELRAVVESCLLEQDSARKDVDTQLQESRALARDAALVLDQLRACQAELSARVQQDGPPLGAATGPALPTADPRGWQASLRALSLAELAGALEDRVREMGRVLCSVTQSLEKLQNLTWGD", "length": 652, "header": "tr|A0A287AX90-1|A0A287AX90_PIG Isoform 1 of Ankyrin repeat and sterile alpha motif domain containing 3 OS=Sus scrofa OX=9823 GN=ANKS3 PE=4 SV=2 CANONICAL=A0A287AX90-1" }, "isoforms": [ { "isoform_ac": "A0A287ABU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX90/entry#A0A287ABU8-1", "sequence": { "sequence": "MVLQSQRLESTCSLRGLCNYAVGKEHSCPSNGPQQGRSRREVTDIGVPAVAQCVEGSRVATAASGIQSLGPKQPGRKGLTSPTSAAAMSELSDEASEPELLNRSLSMWHGLGAQVSREELAVPLDLHTAASVGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLDSGANANVREPVYGFTPLMEAAAAGHEIIVQYFLNHGVKVDTRDHSGATARMLAKQYGHMKIVGLLDAHSASLPKSLYRSPEKYEDLSSSDESCPVPQRQRPCRKKGLSIHDGPRALARITAIGLGGRTRQPRYEQVLPRGYVTFNSSDESPLGERGLCYRDVTSPINDRDVESSSSSSREEHTFCANLGAARSSSSSEGLARAPGLSSEASLESNEDSDHARKSLVRKQTKSYLKAKNRHSSSDSQWSPSTGTSCAPGSVPQTDRAPYSGPQDLAALLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKRCEEVEAMRGQVSQEQELRAVVESCLLEQDSARKDVDTQLQESRALARDAALVLDQLRACQAELSARVQQDGPPLGAATGPALPTADPRGWQASLRALSLAELAGALEDRVREMGRVLCSVTQSLEKLQVLNGRENWREP", "length": 744, "header": "tr|A0A287ABU8-1|A0A287AX90_PIG Computationally mapped isoform of Ankyrin repeat and sterile alpha motif domain containing 3 OS=Sus scrofa OX=9823 GN=ANKS3 PE=4 SV=3 CANONICAL=A0A287AX90-1" }, "locus": { "chromosome": "3", "start_pos": 37689060, "end_pos": 37664198, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041338.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041338.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041354.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041354.3" } ] } }, { "isoform_ac": "A0A287AVL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX90/entry#A0A287AVL1-1", "sequence": { "sequence": "MPQPGRKGLTSPTSAAAMSELSDEASEPELLNRSLSMWHGLGAQVSREELAVPLDLHTAASVGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLDSGANANVREPVYGFTPLMEAAAAGHEIIVQYFLNHGVKVDTRDHSGATARMLAKQYGHMKIVGLLDAHSASLPKSLYRSPEKYEDLSSSDESCPVPQRQRPCRKKGLSIHDGPRALARITAIGLGGRTRQPRYEQVLPRGYVTFNSSDESPLGERGLCYRDVTSPINDRDVESSSSSSREEHTFCANLGAARSSSSSEGLARAPGLSSEASLESNEDSDHARKSLVRKQTKSYLKAKNRHSSSDSQWSPSTGTSCAPGSVPQTDRAPYSGPQDLAALLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKRCEEVEAMRGQVSQEQELRAVVESCLLEQDSARKDVDTQLQESRALARDAALVLDQLRACQAELSARVQQDGPPLGAATGPALPTADPRGWQASLRALSLAELAGALEDRVREMGRVLCSVTQSLEKLQVLNGRENWREP", "length": 674, "header": "tr|A0A287AVL1-1|A0A287AVL1_PIG Computationally mapped isoform of Ankyrin repeat and sterile alpha motif domain containing 3 OS=Sus scrofa OX=9823 GN=ANKS3 PE=4 SV=2 CANONICAL=A0A287AX90-1" }, "locus": { "chromosome": "3", "start_pos": 37689060, "end_pos": 37666375, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044528.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044528.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047960.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047960.2" } ] } }, { "isoform_ac": "A0A287AX90-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX90/entry#A0A287AX90-1", "sequence": { "sequence": "MSELSDEASEPELLNRSLSMWHGLGAQVSREELAVPLDLHTAASVGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLDSGANANVREPVYGFTPLMEAAAAGHEIIVQYFLNHGVKVDTRDHSGATARMLAKQYGHMKIVGLLDAHSASLPKSLYRSPEKYEDLSSSDESCPVPQRQRPCRKKGLSIHDGPRALARITAIGLGGRTRQPRYEQVLPRGYVTFNSSDESPLGERGLCYRDVTSPINDRDVESSSSSSREEHTFCANLGAARSSSSSEGLARAPGLSSEASLESNEDSDHARKSLVRKQTKSYLKAKNRHSSSDSQWSPSTGTSCAPGSVPQTDRAPYSGPQDLAALLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKRCEEVEAMRGQVSQEQELRAVVESCLLEQDSARKDVDTQLQESRALARDAALVLDQLRACQAELSARVQQDGPPLGAATGPALPTADPRGWQASLRALSLAELAGALEDRVREMGRVLCSVTQSLEKLQNLTWGD", "length": 652, "header": "tr|A0A287AX90-1|A0A287AX90_PIG Isoform 1 of Ankyrin repeat and sterile alpha motif domain containing 3 OS=Sus scrofa OX=9823 GN=ANKS3 PE=4 SV=2 CANONICAL=A0A287AX90-1" }, "locus": { "chromosome": "3", "start_pos": 37689168, "end_pos": 37669250, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053580.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053580.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048763.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048763.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABU8", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX90", "url": "https://www.uniprot.org/uniprotkb/A0A287AX90" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX90", "url": "https://www.uniprot.org/uniprotkb/A0A287AX90" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 647, "end_pos": 649, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AX90-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 652, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AX90-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AX90" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AX90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX90" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 425, "end_pos": 488, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 15, "end_pos": 17 }, { "start_pos": 301, "end_pos": 303 }, { "start_pos": 647, "end_pos": 649 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"name": "TEX10", "type": "recommended", "evidence": [ { "id": "A0A287AR35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35" } ] }, { "name": "TEX10", "type": "synonym", "evidence": [ { "id": "XP_001925976", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925976" } ] } ], "protein_names": [ { "name": "Testis-expressed protein 10", "type": "recommended", "evidence": [ { "id": "A0A287AR35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35/entry#names_and_taxonomy" } ] }, { "name": "testis-expressed protein 10", "type": "synonym", "evidence": [ { "id": "XP_001925976", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925976" } ] } ], "function": [ { "annotation": "Functions as a component of the Five Friends of Methylated CHTOP (5FMC) complex; the 5FMC complex is recruited to ZNF148 by methylated CHTOP, leading to desumoylation of ZNF148 and subsequent transactivation of ZNF148 target genes. Component of the PELP1 complex involved in the nucleolar steps of 28S rRNA maturation and the subsequent nucleoplasmic transit of the pre-60S ribosomal subunit.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R3S9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3S9#function" }, { "database": "UniProtKB", "id": "ARBA00058500", "url": "https://www.uniprot.org/uniprotkb/ARBA00058500#function" }, { "database": "UniProtKB", "id": "F1SSD0", "url": "https://www.uniprot.org/uniprotkb/F1SSD0#function" }, { "database": "UniProtKB", "id": "A0A287AR35", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AR35", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TEX10", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35", "locus": { "chromosome": "1", "start_pos": 242058041, "end_pos": 242120554, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005389", "url": "https://www.ensembl.org/id/ENSSSCG00000005389" } ] } } ], "crossref": [ { "id": "A0A287AR35", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AR35", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005389", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005389", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157099", "url": "https://www.ncbi.nlm.nih.gov/gene/100157099", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021133", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021133", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024679", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024679", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057949", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057949", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157099", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157099", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WKLHANN", "url": "https://omabrowser.org/oma/group/WKLHANN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AR35", "url": "https://www.orthodb.org/?gene=A0A287AR35", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16056", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16056", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16056:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16056:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12333", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12333", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25781", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25781", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001925976", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925976", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AD36", "url": "https://www.uniprot.org/uniprotkb/A0A287AD36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AD36-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD36-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AR35", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AR35-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3S9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3S9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3S9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3S9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSD0", "url": "https://www.uniprot.org/uniprotkb/F1SSD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSD0-1", "url": "https://www.uniprot.org/uniprotkb/F1SSD0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTKKRKRQDDFQKVKLKVGKKKPRLENATVTNFKTKTIHLPEQLKEDGTLPTNNRKLNIKDLLSQMHHYNAGVKQSALLGLKDLLSQYPFIIDAHLSNILSEVTAVFTDKDANVRLAAVQLLQFLAPKIRAEQISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDILLEQYPALITGRSSILLKNFVELISHQQLSKGLVNRDRSQSWILSVNPNRRLTSQQWRLKVLVRLSKFLQALADGSSRLRESEGLQEQKENPHATSNSIFINWKEHANDQQHIQVYEHGGSQPNVSSQFRLRYLVGGLGNVDEGLSSTENLKGFIEIIIPLLIECWIEAVPPHLAASVGNGIEREPLQVMQQVLNIISLLWKLSKQHDETHKLESWLRKNYLIDFKHHFMNNFPYALKEISKHRRKETNKSIKHCTVLSNNVDHLLLNLTLSDIMVSLANASTLQKDSNWIEMIRKFITETLEDGSRLNSKQLNRLLGVSWRLMQIQPNREATESLIKAVYTLYQQRCLSLPVRTLLLKFFSKIYQKEELRSYRVRYRSKVLSRWLAGLPLQLAHLGSRNPELSTQLIDIIHTAAARANKELLRSLQVTALRIYDPQEGTVVVLPAESQQLLVQLVYFLPSLPADLLSRLSRCCIMGRLSSSLAAMLIGILHMRSSFSGWKSSVKEWLMSDVDYFSFLFSTLTGFSKEELTWLQSLRGVPHVIQTQLSPVLLYLTDLDQFLHHWDVTETVCHNLLVIPARSQSFDVLQSAISKHLVGLTVIPDSTAGCVLGVICKLLDHTCVLSETLLPFLASCCYSLLYFLLTLEKGEAEHLRKRDKLWGVCVSILALLPRVLRLMLQSLRVSRAGPEELPVVGQLLRLLLQHAPLRTHMLSNAILVQQIIKNITTLKSGGAQEQWLTDLHYCFNVYITGHPQGPSALSTVY", "length": 929, "header": "tr|A0A287AR35-1|A0A287AR35_PIG Isoform 1 of Testis-expressed protein 10 OS=Sus scrofa OX=9823 GN=TEX10 PE=1 SV=1 CANONICAL=A0A287AR35-1" }, "isoforms": [ { "isoform_ac": "A0A287AD36-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35/entry#A0A287AD36-1", "sequence": { "sequence": "MTKKRKRQDDFQKVKLKVGKKKPRLENATVTNFKTKTIHLPEQLKEDGTLPTNNRKLNIKDLLSQMHHYNAGVKQSALLGLKDLLSQYPFIIDAHLSNILSEVTAVFTDKDANVRLAAVQLLQFLAPKIRAEQISPFFPLALADGSSRLRESEGLQEQKENPHATSNSIFINWKEHANDQQHIQVYEHGGSQPNVSSQFRLRYLVGGLGNVDEGLSSTENLKGFIEIIIPLLIECWIEAVPPHLAASVGNGIEREPLQVMQQVLNIISLLWKLSKQHDETHKLESWLRKNYLIDFKHHFMNNFPYALKEISKHRRKETNKSIKHCTVLSNNVDHLLLNLTLSDIMVSLANASTLQKDSNWIEMIRKFITETLEDGSRLNSKQLNRLLGVSWRLMQIQPNREATESLIKAVYTLYQQRCLSLPVRTLLLKFFSKIYQKEELRSYRVRYRSKVLSRWLAGLPLQLAHLGSRNPELSTQLIDIIHTAAARANKELLRSLQVTALRIYDPQEGTVVVLPAESQQLLVQLVYFLPSLPADLLSRLSRCCIMGRLSSSLAAMLIGILHMRSSFSGWKSSVKEWLMSDVDYFSFLFSTLTGFSKEELTWLQSLRGVPHVIQTQLSPVLLYLTDLDQFLHHWDVTETVCHNLLVIPARSQSFDVLQSAISKHLVGLTVIPDSTAGCVLGVICKLLDHTCVLSETLLPFLASCCYSLLYFLLTLEKGEAEHLRKRDKLWGVCVSILALLPRVLRLMLQSLRVSRAGPEELPVVGQLLRLLLQHAPLRTHMLSNAILVQQIIKNITTLKSGGAQEQWLTDLHYCFNVYITGHPQGPSALSTVY", "length": 833, "header": "tr|A0A287AD36-1|A0A287AR35_PIG Computationally mapped isoform of Testis-expressed protein 10 OS=Sus scrofa OX=9823 GN=TEX10 PE=1 SV=3 CANONICAL=A0A287AR35-1" }, "locus": { "chromosome": "1", "start_pos": 242116322, "end_pos": 242058142, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039346.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039346.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041724.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041724.3" } ] } }, { "isoform_ac": "A0A287AR35-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35/entry#A0A287AR35-1", "sequence": { "sequence": "MTKKRKRQDDFQKVKLKVGKKKPRLENATVTNFKTKTIHLPEQLKEDGTLPTNNRKLNIKDLLSQMHHYNAGVKQSALLGLKDLLSQYPFIIDAHLSNILSEVTAVFTDKDANVRLAAVQLLQFLAPKIRAEQISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDILLEQYPALITGRSSILLKNFVELISHQQLSKGLVNRDRSQSWILSVNPNRRLTSQQWRLKVLVRLSKFLQALADGSSRLRESEGLQEQKENPHATSNSIFINWKEHANDQQHIQVYEHGGSQPNVSSQFRLRYLVGGLGNVDEGLSSTENLKGFIEIIIPLLIECWIEAVPPHLAASVGNGIEREPLQVMQQVLNIISLLWKLSKQHDETHKLESWLRKNYLIDFKHHFMNNFPYALKEISKHRRKETNKSIKHCTVLSNNVDHLLLNLTLSDIMVSLANASTLQKDSNWIEMIRKFITETLEDGSRLNSKQLNRLLGVSWRLMQIQPNREATESLIKAVYTLYQQRCLSLPVRTLLLKFFSKIYQKEELRSYRVRYRSKVLSRWLAGLPLQLAHLGSRNPELSTQLIDIIHTAAARANKELLRSLQVTALRIYDPQEGTVVVLPAESQQLLVQLVYFLPSLPADLLSRLSRCCIMGRLSSSLAAMLIGILHMRSSFSGWKSSVKEWLMSDVDYFSFLFSTLTGFSKEELTWLQSLRGVPHVIQTQLSPVLLYLTDLDQFLHHWDVTETVCHNLLVIPARSQSFDVLQSAISKHLVGLTVIPDSTAGCVLGVICKLLDHTCVLSETLLPFLASCCYSLLYFLLTLEKGEAEHLRKRDKLWGVCVSILALLPRVLRLMLQSLRVSRAGPEELPVVGQLLRLLLQHAPLRTHMLSNAILVQQIIKNITTLKSGGAQEQWLTDLHYCFNVYITGHPQGPSALSTVY", "length": 929, "header": "tr|A0A287AR35-1|A0A287AR35_PIG Isoform 1 of Testis-expressed protein 10 OS=Sus scrofa OX=9823 GN=TEX10 PE=1 SV=1 CANONICAL=A0A287AR35-1" }, "locus": { "chromosome": "1", "start_pos": 242116322, "end_pos": 242058142, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063565.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063565.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046412.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046412.1" } ] } }, { "isoform_ac": "A0A5G2R3S9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35/entry#A0A5G2R3S9-1", "sequence": { "sequence": "MSCTISFHLWYQLMIKLQGKLTKCACLINENNFYIKRGQHSRMTKKRKRQDDFQKVKLKVGKKKPRLENATVTNFKTKTIHLPEQLKEDGTLPTNNRKLNIKDLLSQMHHYNAGVKQSALLGLKDLLSQYPFIIDAHLSNILSEVTAVFTDKDANVRLAAVQLLQFLAPKIRAEQISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDILLEQYPALITGRSSILLKNFVELISHQQLSKGLVNRDRSQSWILSVNPNRRLTSQQWRLKVLVRLSKFLQALADGSSRLRESEGLQEQKENPHATSNSIFINWKEHANDQQHIQVYEHGGSQPNVSSQFRLRYLVGGLGNVDEGLSSTENLKGFIEIIIPLLIECWIEAVPPHLAASVGNGIEREPLQVMQQVLNIISLLWKLSKQHDETHKLESWLRKNYLIDFKHHFMNNFPYALKEISKHRRKETNKSIKHCTVLSNNVDHLLLNLTLSDIMVSLANASTLQKDSNWIEMIRKFITETLEDGSRLNSKQLNRLLGVSWRLMQIQPNREATESLIKAVYTLYQQRCLSLPVRTLLLKFFSKIYQKEELRSYRVRYRSKVLSRWLAGLPLQLAHLGSRNPELSTQLIDIIHTAAARANKELLRSLQVTALRIYDPQEGTVVVLPAESQQLLVQLVYFLPSLPADLLSRLSRCCIMGRLSSSLAAMLIGILHMRSSFSGWKSSVKEWLMSDVDYFSFLFSTLTGFSKEELTWLQSLRGVPHVIQTQLSPVLLYLTDLDQFLHHWDVTETVCHNLLVIPARSQSFDVLQSAISKHLVGLTVIPDSTAGCVLGVICKLLDHTCVLSETLLPFLASCCYSLLYFLLTLEKGEAEHLRKRDKLWGVCVSILALLPRVLRLMLQSLRVSRAGPEELPVVGQLLRLLLQHAPLRTHMLSNAILVQQIIKNITTLKSGGAQEQWLTDLHYCFNVYITGHPQGPSALSTVY", "length": 971, "header": "tr|A0A5G2R3S9-1|A0A287AR35_PIG Computationally mapped isoform of Testis-expressed protein 10 OS=Sus scrofa OX=9823 GN=TEX10 PE=1 SV=1 CANONICAL=A0A287AR35-1" }, "locus": { "chromosome": "1", "start_pos": 242119106, "end_pos": 242058142, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088284.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088284.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065206.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065206.1" } ] } }, { "isoform_ac": "F1SSD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35/entry#F1SSD0-1", "sequence": { "sequence": "MTKKRKRQDDFQKVKLKVGKKKPRLENATVTNFKTKTIHLPEQLKEDGTLPTNNRKLNIKDLLSQMHHYNAGVKQSALLGLKDLLSQYPFIIDAHLSNILSEVTAVFTDKDANVRLAAVQLLQFLAPKIRAEQISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDILLEQYPALITGRSSILLKNFVELISHQQLSKGLVNRDRSQSWILSVNPNRRLTSQQWRLKVLVRLSKFLQALADGSSRLRESEGLQEQKENPHATSNSIFINWKEHANDQQHIQVYEHGGSQPNVSSQFRLRYLVGGLGNVDEGLSSTENLKGFIEIIIPLLIECWIEAVPPHLAASVGNGIEREPLQVMQQVLNIISLLWKLSKQHDETHKLESWLRKNYLIDFKHHFMNNFPYALKEISKHRRKETNKSIKHCTVLSNNVDHLLLNLTLSDIMVSLANASTLQKDSNWIEMIRKFITETLEDGSRLNSKQLNRLLGVSWRLMQIQPNREATESLIKAVYTLYQQRCLSLPVRTLLLKFFSKIYQKEELRSYRVRYRSKVLSRWLAGLPLQLAHLGSRNPELSTQLIDIIHTAAARANKELLRSLQVTALRIYDHHFLDGSLQLKSG", "length": 614, "header": "tr|F1SSD0-1|A0A287AR35_PIG Computationally mapped isoform of Testis-expressed protein 10 OS=Sus scrofa OX=9823 GN=TEX10 PE=1 SV=3 CANONICAL=A0A287AR35-1" }, "locus": { "chromosome": "1", "start_pos": 242116322, "end_pos": 242084250, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005932.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005932.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005785.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005785.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R3S9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3S9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157099", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157099", "resource": "KEGG Pathway" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7I311-1", "protein_name": "Testis-expressed protein 10 isoform X1", "gene_name": "Tex10", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTKKRKRQDDFQKVKLKVGKKKPKLENATATNFKTKAIHLPEQLKEDRTLPTNNRKLNIKDLLSQMHHYNAGVKQSALLGLKDLLSQYPFIIDAHLSNILSEVTAVFTDRDANVRLAAVQLLQFLAPKIRTEQISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDVLLEHYPALITGRSSILLKNFVELISHQQLSKGLINRDRSQSWILSVNPNRRVTSQQWRLKVLARLSKFLQALADGSSRLRESEGLQEQKETPHATSNSIFINWKDHASDQQQIQVYENGGSQPNVSSQFRLRYLGAQGAVDEDLSSPENLKGFIEIIIPLLIECWIEALPPQLAAAIGNGIEREPLQVMQQVLNVISLLWKLSKQQDETHTLESWLRKNYLTDFKHHFMSHFPYALKEITKQRKKETNKSIKHCTVLSNNVDHLLLNLTLSDIMVSLANASTLQNDSSWIETIRKFVTETLKGGARLNSKQLNRLLGVSWRLIQMQPNREATEILIKAVYTLYQQRGLLLPVRTLLIKFFSKIYQKEELRSYRLRYRSRVLSRWLAGLPLQLSHLGSRNPELSTQLIDIIHTAAAQANKDLLKSLQAAALRIYDPQEGAVVVLPAESQQRLVQLLYFLPTLPADLLSRLSRCCIMGRLGSSLAATLIGILYMRSSFSGWNHSINDYLMTDVDYLSFLFSTLTGFSKEELAWLQNLRGVPHVIQTSLSPVLLYLTDLDQFLHHWDITEAVCHSLLVIPARSQSFDIMQSAISKHLVGLTVIPDSTAGCIFGVMCKLLDHTCVVSESLLPFLASCCYSLLYFLLTLEKGEAEHLKKRDKLWGVCVSILALLPRVLRLMLQSLRVSRASPEELPVVGQLLRLLLQHVPLRTHMLTNAILVQQIIKNITTLKSGSVQEQWLTDLHYCFSVYISGHPQGPSILNALY", "length": 928 }, "evidence": [ { "id": "A0A287AR35", "url": "https://omabrowser.org/oma/group/A0A287AR35/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1M1K0-1", "protein_name": "Testis-expressed protein 10", "gene_name": "TEX10", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTKKRKRQDDFQKVKLKVGKKKPRSENATLTNFKTKTIHLPEQLKEDVTLPTNNRKLNIKDLLSQMHHYNAGVKQSALLGLKDLLSQYPYIIDAHLSNILSEVTAVFTDKDANVRLAAVQLLQFLAPKIRAEQISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDILLEQYPALITDRSSILLKNFVELISHQQPSKGLVNRDRSQSWILSVNPNRRLTSQQWRLKVLVRLSKFLQALTDGSSRLRESEGLQEQKENPHATSNSIFINWKEHANDQQHIQVYENGGSQPNVSSQFRLRYLVGGLGTVDEGLSSTENLKGFIEIIIPLLIECWIEAVPPQLAASVGNGIEREPLQVMQQVLNIISLLWKLSKQHDETHKLESWLRKNYLIDFKHHFMSNFPYALKEITKQKRKETNKSIKHCTILSHNVDHLLLNLTLSDIMVSLANASTLQKDSSWIERIRKFVTETLEDGSRLNSKQLNRLLGVSWRLMQIQPNREATESLIKAVYTLYQQRGLLIPVRTLLLKFFSKIYQKEELRAYRIRYRSKVLSRWLAGLPLQLAHLGSRNPELSTQLIDIIHTAAARANKELLKSLQVTALRIYDPQEGTVVVLPAESQQLLVQLVYFLPSLPADLLSRLSRCCIMGRLSADLAAMLIGILHMRSSFSGWKSSVKEQNGSVQLNISNADYFSFLFSTLTGFSKEELTWLQSLRGVPHVIQTQLSPMLLYLTDLDQFLHHWDVTEVGLTVIPDSTAGCVLGVICKLLDHTCVLSETLLPFLASCCYSLLYFLLTLEKGEAEHLRKRDKLWGVCVSVLALLPRVLRLMLQSLRVNRAGPEELPVVGQLLRLLLQHAPLRTHMLTNAILVQQIIKNITTLKSGGVQEQWLTDLHYCFNVYITGHPQGPNALSTVY", "length": 908 }, "evidence": [ { "id": "A0A287AR35", "url": "https://omabrowser.org/oma/group/A0A287AR35/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A401-1", "protein_name": "Testis expressed 10", "gene_name": "Tex10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRKRQDDFQKVKLKVGKKKPKLENATATNFKTKAIHLPEQLKEDRTLPTNNRKLNIKDLLSQMHHYNGGVKQSALLGLKDLLSQYPCIIDAHLSNILSEVTAVFTDRDANVRLAAVQLLQFLAPKIRTEQISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDVLLEHYPALITGRSSILLKNFVELISHQQLSKGLVNRDRPQSWILSVNPNRRVTSQQWRLKVLARLSKFLQALADGSSRLRESEGLQEQKETPHATSNSIFINWKDHANDQQQIQVYENGGSQPNVSSQFRLRYLVGTLGTVDEDPSSPENLKGFIEIIIPLLIECWIEALPPQLAASVGSGVEREPLQVMQQVLNVISLLWKLSKQQDETHTLESWLRKNYLSDFKHHFMTHFPYALKEMTKQRKKETNKSIKHCTVLSNNVDHLLLNLTLSDIMVSLANASTLQNDSSWIETIRKFVTETLKGGARLNSKQLNRLLGVSWRLIQMQPNRDATENLIKAVYALYQQRGLLLPVRTLLIKFFSKIYQKEELRSYRLRYRSRVLSRWLAGLPLQLSYLGSRNPELSTQLIDIIHTAASQANKDLLKNLQAAALRIYDPQEGAVVVLPAESQQRLVQLLYFLPTLPADLLSQLSRCCIMGRLGSSLAGTLIGILYMRSSFSGWSHSVNDCLMTDVDYLSFLFSTLTGFSKEELAWLQNLRGVPHVIQTSLSPVLLYLTDLDQFLHHWDITEAVCHSLLVIPARSQSFDIMQSAISKHLVGLTVIPDSTAGCIFGVMCKLLDHTCVVNEALLPFLASCCYSLLYFLLTLEKGEAEHLKKRDKLWEVCVSILALLPRVLRLMLQSLRVNRASPEELPVVGQLLRLLLQHVPLRSHMLTNAILVQQIIKNITTLKSGSVQEQWLTDLHYCFSVYISGHPQGPSILNALY", "length": 929 }, "evidence": [ { "id": "A0A287AR35", "url": "https://omabrowser.org/oma/group/A0A287AR35/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3URQ0-1", "protein_name": "Testis-expressed protein 10", "gene_name": "Tex10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKKRKRQDDFQKVKLKVGKKKPKLENATATNFKTKAIHLPEQLKEDRTLPTNNRKLNIKDLLSQMHHYSGGVKQSALLGLKDLLSQYPFIIDAHLSNILSEVTAVFTDRDANVRLAAVQLLQFLAPKIRTEHISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDILLEHYPALITGRSSILLKNFVELISHQQLSKGLVNRDRSQSWILSVNPNRRVTSQQWRLKVLARLSKFLQALADGSSRLRESEGLQEQKETPHATSNSIFINWKDHANDQQQIQVYENGGSQPNVSSQFRLRCLGTLGTVDEDLSSPENLKGFIEIIIPLLIECWIEALPPQLAASVGSGVEREPLQVMQQVLNVISLLWKLSKQQDETHTLESWLRKNYLTDFKHHFMSHFPYALKEITKQRKKDTNKSIKHCTVLSNNVDHLLLNLTLSDIMVSLANASTLQNDSSWIETIRKFVTETLKGGTRLNSKQLNRLLGVSWRLIQMQPNRDATENLIKAVYTLYQQRGLLLPVRTLLIKFFSKIYQKEELRSYRLRYRSKVLSRWLAGLPLQLSYLGSRNPELSTQLIDIIHTAASQANKDLLKNLQAAALRIYDPQEGAVVVLPAESQQRLVQLLYFLPTLPADLLSQLSRCCIMGRLGSSLAVTLIGILYMRSSFSGWSHSVNDCLMTDVDYLSFLFSTLTGFSKEELTWLQNLRGVPHVVQTSLSPVLLYLTDLDQFLHHWDITEAVCHSLLVIPARSQSFDIMQSAISKHLVGLTVIPDSTAGCIFGVMCKLLDHTCVVNEALLPFLASCCYSLLYFLLTLEKGDAEHLKKRDKLWEVCVSILALLPRVLRLMLQSLRVNRASPEELPVVGQLLRLLLQHVPLRSHMLTNAILVQQIIKNITTLKSGSVQEQWLTDLHYCFSVYISGHPQGPSILNALY", "length": 928 }, "evidence": [ { "id": "A0A287AR35", "url": "https://omabrowser.org/oma/group/A0A287AR35/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q55DQ9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGRSAPKKTLQPSLDFKVKKKKLGKKPPPNPNITVTTFKSKALNMPGQNIVEEKDDLVNHRNLTLKDLLTKLNHYNDQVKKDAVTGIRDLILKHPSVLFVHLGAIMNKLVEVINDLDKDVRHCTHTLISTILPMLDEISISPFIPLFSVYINSGMTHLKTTIRLDSLRLLDIFIDHYPNLVSRSCHQMIPNYIDLLKRVSGAATVATISTSTSSSANVPISASVPVSQQKNKSSTASSTPKANSLHTRVMILKSLFKLIKVLLHEPDLSFSSLLNKIHKQRENTQIIDGKMAIDCSLTYQAYNDRKVFPDLFSKYLVKNNEQQQLNSDGTVKSLFPTILETSEEVKQFSSTLLPILIDLWLELGPSNPGISFQVLEDLELVVSIIQLLVHCLKENFSTTDFYEQLRKDYIKFFSVHFPFYVGSPSNPDSKEWIISCSINSLMTQTASHFLGYSPSISNVDQTINGWYQPFFEFIEDALNGKLIDEKVEATKGQSIKTHISNLLWIVKIILPILSSTQSESILNSFISFDEKCHPHSTSKKACVFFIKELIDIQSNPLLSNVKSFKNIIEWGLTSLPKLLWKLGNSDNDTSLMILNILLSVGRDKSKIKQYDSIQNALVPFFFTISKPTPQFPNGKQIYGPFSSLPLNIQFLALNTLYYFSSLNKIMIRSLIAICRSNKSSPEIISIVLDLIHNLYLVGTLSLSHYTAFCIAITLSITSKEIEDNTNNVIMIDEEKIQEQEKIIKKLCWNINSLRLSNSIENILEPMTEPFISELKKISTNFQDNNNENSGDSLNYILSLILSCFTDKNDYNNEIREKEFKSLSNELIITITNSIFIYIFQSIKFINSTSTKIYDLNIILKIIQLDNSNQILINILNLISSKLNVGNNQVEKNNNNQYSILSLIELFKSKELYEIFQLSNVKSIVGSIVKKVEKSVSTQLSTEKQLLEKLLSEVKLLFNE", "length": 959 }, "evidence": [ { "id": "A0A287AR35", "url": "https://omabrowser.org/oma/group/A0A287AR35/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9NXF1-1", "protein_name": "Testis-expressed protein 10", "gene_name": "TEX10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTKKRKRQHDFQKVKLKVGKKKPKLQNATPTNFKTKTIHLPEQLKEDGTLPTNNRKLNIKDLLSQMHHYNAGVKQSALLGLKDLLSQYPFIIDAHLSNILSEVTAVFTDKDANVRLAAVQLLQFLAPKIRAEQISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDILLEQYPALITGRSSILLKNFVELISHQQLSKGLINRDRSQSWILSVNPNRRLTSQQWRLKVLVRLSKFLQALADGSSRLRESEGLQEQKENPHATSNSIFINWKEHANDQQHIQVYENGGSQPNVSSQFRLRYLVGGLSGVDEGLSSTENLKGFIEIIIPLLIECWVEAVPPQLATPVGNGIEREPLQVMQQVLNIISLLWKLSKQQDETHKLESWLRKNYLIDFKHHFMSRFPYVLKEITKHKRKEPNKSIKHCTVLSNNIDHLLLNLTLSDIMVSLANASTLQKDCSWIEMIRKFVTETLEDGSRLNSKQLNRLLGVSWRLMQIQPNREDTETLIKAVYTLYQQRGLILPVRTLLLKFFSKIYQTEELRSCRFRYRSKVLSRWLAGLPLQLAHLGSRNPELSTQLIDIIHTAAARANKELLKSLQATALRIYDPQEGAVVVLPADSQQRLVQLVYFLPSLPADLLSRLSRCCIMGRLSSSLAAMLIGILHMRSSFSGWKYSAKDWLMSDVDYFSFLFSTLTGFSKEELTWLQSLRGVPHVIQTQLSPVLLYLTDLDQFLHHWDVTEAVFHSLLVIPARSQNFDILQSAISKHLVGLTVIPDSTAGCVFGVICKLLDHTCVVSETLLPFLASCCYSLLYFLLTIEKGEAEHLRKRDKLWGVCVSILALLPRVLRLMLQSLRVNRVGPEELPVVGQLLRLLLQHAPLRTHMLTNAILVQQIIKNITTLKSGSVQEQWLTDLHYCFNVYITGHPQGPSALATVY", "length": 929 }, "evidence": [ { "id": "A0A287AR35", "url": "https://omabrowser.org/oma/group/A0A287AR35/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR35", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR35", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR35", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35" } ], "pmid": "" }, { "name": "MLL1 complex", "id": "GO:0071339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071339", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR35", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR35", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" }, { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" }, { "start_pos": 415, "end_pos": 417, "annotation": "n_glycosylation_sequon" }, { "start_pos": 434, "end_pos": 436, "annotation": "n_glycosylation_sequon" }, { "start_pos": 446, "end_pos": 448, "annotation": "n_glycosylation_sequon" }, { "start_pos": 890, "end_pos": 892, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AR35-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 929, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AR35-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AR35" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AR35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35" }, { "id": "PF12333", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12333" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pre-rRNA-processing protein Ipi1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 235, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AR35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AR35" }, { "id": "PF25781", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25781" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TEX10-like TPR repeats", "eco_id": "ECO_0000259", "start_pos": 547, "end_pos": 915, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 27, "end_pos": 29 }, { "start_pos": 290, "end_pos": 292 }, { "start_pos": 415, "end_pos": 417 }, { "start_pos": 434, "end_pos": 436 }, { "start_pos": 446, "end_pos": 448 }, { "start_pos": 890, "end_pos": 892 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AT50-1", "uniprot_ac": "A0A287AT50", "uniprot_id": "A0A287AT50_PIG", "mass": { "chemical_mass": 88949.0, "monoisotopic_mass": 88949.0 }, "refseq": { "ac": "XP_005670199", "name": "leucine-rich repeat and calponin homology domain-containing protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670199" }, "gene_names": [ { "name": "LRCH3", "type": "recommended", "evidence": [ { "id": "A0A287AT50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50" } ] }, { "name": "LRCH3", "type": "synonym", "evidence": [ { "id": "XP_005670199", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670199" } ] } ], "protein_names": [ { "name": "Leucine rich repeats and calponin homology domain containing 3", "type": "synonym", "evidence": [ { "id": "A0A287AT50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat and calponin homology domain-containing protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005670199", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670199" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AT50", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRCH3", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50", "locus": { "chromosome": "13", "start_pos": 134539326, "end_pos": 134406080, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011854", "url": "https://www.ensembl.org/id/ENSSSCG00000011854" } ] } } ], "crossref": [ { "id": "A0A287AT50", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AT50", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011854", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011854", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21272", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21272", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514426", "url": "https://www.ncbi.nlm.nih.gov/gene/100514426", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514426", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514426", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CMLYSWI", "url": "https://omabrowser.org/oma/group/CMLYSWI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AH34", "url": "https://www.orthodb.org/?gene=A0A287AH34", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A287AT50", "url": "https://www.orthodb.org/?gene=A0A287AT50", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16083", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16083", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16083:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16083:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051:SF44", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051:SF44", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005670199", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670199", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AH34", "url": "https://www.uniprot.org/uniprotkb/A0A287AH34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AH34-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH34-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AM32", "url": "https://www.uniprot.org/uniprotkb/A0A287AM32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AM32-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM32-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMV9", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287AQJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AT50", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AT50-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH52", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH52-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ75", "url": "https://www.uniprot.org/uniprotkb/F1SQ75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ75-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ75-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAGLVAVATATEYSGPGTSGGNLSVVNCGPNSGTGPGPGPGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPIEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVRLPEELAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKVHIFKYLNIQACKIAPDLPDYDRRPMGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRREGQYQENRSSLVVTNGGVEHDLDQIDYIDSCTAEEEEDEVRPPKGLDSDSLSSQFMAYIEQRRISHEGSPVKPVPMREFQKSEDMRRYSHQSRVPVEPSSLLSLSPSHNQFSHTDLELHRRREQLVERTRREAQLAALQYEEEKIRTKQIQRDAVLDFVKQKAAQSPQKQQSPLDGECPFPSRRSQHTDDSALLVSLSGVNQVGCATTLPHSSAIRPIKNDDRSNAVSSSPATETVHHSPAYSFPAAIQRNQPQRPESFLFRGAVRGETNKGHTSSLLPSTAPTTDSADSVARQNSRQREEELELIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIGVPQDNLCSPSDILQLNLSVKRTVETLLSLGAHSEESSFVSLSMQLLGFVAFYCTLMLTLCMLYYWIFPL", "length": 799, "header": "tr|A0A287AT50-1|A0A287AT50_PIG Isoform 1 of Leucine rich repeats and calponin homology domain containing 3 OS=Sus scrofa OX=9823 GN=LRCH3 PE=4 SV=2 CANONICAL=A0A287AT50-1" }, "isoforms": [ { "isoform_ac": "A0A287AH34-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50/entry#A0A287AH34-1", "sequence": { "sequence": "MAAAGLVAVATATEYSGPGTSGGNLSVVNCGPNSGTGPGPGPGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPIEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVRLPEELAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKVHIFKYLNIQACKIAPDLPDYDRRPMGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRREGQYQENRSSLVVTNGGVEHDLDQIDYIDSCTAEEEEDEVRPPKGLDSDSLSSQFMAYIEQRRISHEGSPVKPVPMREFQKSEDMRRYSHQSRVPVEPSSLLSLSPSHNQFSHTDLELHRRREQLVERTRREAQLAALQYEEEKIRTKQIQRDAVLDFVKQKAAQSPQKQQSPLDGESLSGVNQVGCATTLPHSSAIRPIKNDDRSNAVSSSPATETVHHSPAYSFPAAIQRNQPQRPESFLFRGAVRGETNKGHTSSLLPSTAPTTDSADSVARQNSRQREEELELIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIGVPQDNLCSPSDILQLNLSVKRTVETLLSLGAHSEESSFVSLSMQLLGFVAFYCTLMLTLCMLYYWIFPL", "length": 781, "header": "tr|A0A287AH34-1|A0A287AT50_PIG Computationally mapped isoform of Leucine rich repeats and calponin homology domain containing 3 OS=Sus scrofa OX=9823 GN=LRCH3 PE=4 SV=2 CANONICAL=A0A287AT50-1" }, "locus": { "chromosome": "13", "start_pos": 134532876, "end_pos": 134406122, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052232.2", "url": "https://www.ensembl.org/id/ENSSSCT00000052232.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043183.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043183.2" } ] } }, { "isoform_ac": "A0A287AM32-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50/entry#A0A287AM32-1", "sequence": { "sequence": "MAAAGLVAVATATEYSGPGTSGGNLSVVNCGPNSGTGPGPGPGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPIEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVRLPEELAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKVHIFKYLNIQACKIAPDLPDYDRRPMGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRREGQYQENRSSLVVTNGGVEHDLDQIDYIDSCTAEEEEDEVRPPKGLDSDSLSSQFMAYIEQRRISHEGSPVKPVPMREFQKSEDMRRYSHQSRVPVEPSSLLSLSPSHNQFSHTDLELHRRREQLVERTRREAQLAALQYEEEKIRTKQIQRDAVLDFVKQKAAQSPQKQQSPLDGENDDRSNAVSSSPATETVHHSPAYSFPAAIQRNQPQRPESFLFRGAVRGETNKGHTSSLLPSTAPTTDSADSVARQNSRQREEELELIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIGVPQEQLCLPLHILEEKGLSQVAVTVQALLELAPPKQQQHQFSAV", "length": 732, "header": "tr|A0A287AM32-1|A0A287AT50_PIG Computationally mapped isoform of Leucine rich repeats and calponin homology domain containing 3 OS=Sus scrofa OX=9823 GN=LRCH3 PE=4 SV=1 CANONICAL=A0A287AT50-1" }, "locus": { "chromosome": "13", "start_pos": 134536273, "end_pos": 134406122, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065012.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065012.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045097.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045097.1" } ] } }, { "isoform_ac": "A0A287AMV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50/entry#A0A287AMV9-1", "sequence": { "sequence": "MAAAGLVAVATATEYSGPGTSGGNLSVVNCGPNSGTGPGPGPGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRAELAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKVHIFKYLNIQACKIAPDLPDYDRRPMGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRREGQYQENRSSLVVTNGGVEHDLDQIDYIDSCTAEEEEDEGSPVKPVPMREFQKSEDMRRYSHQSRVPVEPSSLLSLSPSHNQFSHTDLELHRRREQLVERTRREAQLAALQYEEEKIRTKQIQRDAVLDFVKQKAAQSPQKQQSPLDGECPFPSRRSQHTDDSALLVSLSGVNQVGCATTLPHSSAIRPIKNDDRSNAVSSSPATETVHHSPAYSFPAAIQRNQPQRPESFLFRGAVRGETNKGHTSSLLPSTAPTTDSADSVARQNSRQREEELELIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIGVPQEQLCLPLHILEEKGLSQVAVTVQALLELAPPKQQQHQFSAV", "length": 620, "header": "tr|A0A287AMV9-1|A0A287AT50_PIG Computationally mapped isoform of Leucine rich repeats and calponin homology domain containing 3 OS=Sus scrofa OX=9823 GN=LRCH3 PE=4 SV=2 CANONICAL=A0A287AT50-1" }, "locus": { "chromosome": "13", "start_pos": 134536273, "end_pos": 134406122, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042288.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042288.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045258.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045258.2" } ] } }, { "isoform_ac": "A0A287AQJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50/entry#A0A287AQJ2-1", "sequence": { "sequence": "MAAAGLVAVATATEYSGPGTSGGNLSVVNCGPNSGTGPGPGPGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPIEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVRLPEELAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKVHIFKYLNIQACKIAPDLPDYDRRPMGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRREGQYQENRSSLVVTNGGVEHDLDQIDYIDSCTAEEEEDEVRPPKGLDSDSLSSQFMAYIEQRRISHEGSPVKPVPMREFQKSEDMRRYSHQSRVPVEPSSLLSLSPSHNQFSHTDLELHRRREQLVERTRREAQLAALQYEEEKIRTKQIQRDAVLDFVKNDDRSNAVSSSPATETVHHSPAYSFPAAIQRNQPQRPESFLFRGAVRGETNKGHTSSLLPSTAPTTDSADSVARQNSRQREEELELIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIGVPQEQLCLPLHILEEKGLSQVAVTVQALLELAPPKQQQHQFSAV", "length": 715, "header": "tr|A0A287AQJ2-1|A0A287AT50_PIG Computationally mapped isoform of Leucine rich repeats and calponin homology domain containing 3 OS=Sus scrofa OX=9823 GN=LRCH3 PE=4 SV=1 CANONICAL=A0A287AT50-1" }, "locus": { "chromosome": "13", "start_pos": 134536273, "end_pos": 134406122, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039750.1", "url": "https://www.ensembl.org/id/ENSSSCT00000039750.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046144.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046144.1" } ] } }, { "isoform_ac": "A0A287AT50-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50/entry#A0A287AT50-1", "sequence": { "sequence": "MAAAGLVAVATATEYSGPGTSGGNLSVVNCGPNSGTGPGPGPGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPIEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVRLPEELAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKVHIFKYLNIQACKIAPDLPDYDRRPMGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRREGQYQENRSSLVVTNGGVEHDLDQIDYIDSCTAEEEEDEVRPPKGLDSDSLSSQFMAYIEQRRISHEGSPVKPVPMREFQKSEDMRRYSHQSRVPVEPSSLLSLSPSHNQFSHTDLELHRRREQLVERTRREAQLAALQYEEEKIRTKQIQRDAVLDFVKQKAAQSPQKQQSPLDGECPFPSRRSQHTDDSALLVSLSGVNQVGCATTLPHSSAIRPIKNDDRSNAVSSSPATETVHHSPAYSFPAAIQRNQPQRPESFLFRGAVRGETNKGHTSSLLPSTAPTTDSADSVARQNSRQREEELELIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIGVPQDNLCSPSDILQLNLSVKRTVETLLSLGAHSEESSFVSLSMQLLGFVAFYCTLMLTLCMLYYWIFPL", "length": 799, "header": "tr|A0A287AT50-1|A0A287AT50_PIG Isoform 1 of Leucine rich repeats and calponin homology domain containing 3 OS=Sus scrofa OX=9823 GN=LRCH3 PE=4 SV=2 CANONICAL=A0A287AT50-1" }, "locus": { "chromosome": "13", "start_pos": 134532876, "end_pos": 134406122, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038706.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038706.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047256.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047256.2" } ] } }, { "isoform_ac": "A0A5G2QPQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50/entry#A0A5G2QPQ1-1", "sequence": { "sequence": "MAAAGLVAVATATEYSGPGTSGGNLSVVNCGPNSGTGPGPGPGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPIEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVRLPEELAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKVHIFKYLNIQACKIAPDLPDYDRRPMGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRREGQYQENRSSLVVTNGGVEHDLDQIDYIDSCTAEEEEDEGSPVKPVPMREFQKSEDMRRYSHQSRVPVEPSSLLSLSPSHNQFSHTDLELHRRREQLVERTRREAQLAALQYEEEKIRTKQIQRDAVLDFVKQKAAQSPQKQQSPLDGECPFPSRRSQHTDDSALLVNDDRSNAVSSSPATETVHHSPAYSFPAAIQRNQPQRPESFLFRGAVRGETNKGHTSSLLPSTAPTTDSADSVARQNSRQREEELELIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIGVPQEQLCLPLHILEEKGLSQVAVTVQALLELAPPKQQQHQFSAV", "length": 722, "header": "tr|A0A5G2QPQ1-1|A0A287AT50_PIG Computationally mapped isoform of Leucine rich repeats and calponin homology domain containing 3 OS=Sus scrofa OX=9823 GN=LRCH3 PE=4 SV=1 CANONICAL=A0A287AT50-1" }, "locus": { "chromosome": "13", "start_pos": 134536273, "end_pos": 134406122, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078115.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078115.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066685.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066685.1" } ] } }, { "isoform_ac": "A0A8W4FH52-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50/entry#A0A8W4FH52-1", "sequence": { "sequence": "MAAAGLVAVATATEYSGPGTSGGNLSVVNCGPNSGTGPGPGPGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRAAYGGEIASGYSNWSRSFESGLGQRGEAGGPHPPSPGACGPDPELGARRTVTPPSPAGEEHRRGLPGSLTLLEN", "length": 160, "header": "tr|A0A8W4FH52-1|A0A287AT50_PIG Computationally mapped isoform of Leucine rich repeats and calponin homology domain containing 3 OS=Sus scrofa OX=9823 GN=LRCH3 PE=4 SV=1 CANONICAL=A0A287AT50-1" }, "locus": { "chromosome": "13", "start_pos": 134406665, "end_pos": 134406122, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105184.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105184.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077640.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077640.1" } ] } }, { "isoform_ac": "F1SQ75-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50/entry#F1SQ75-1", "sequence": { "sequence": "MAAAGLVAVATATEYSGPGTSGGNLSVVNCGPNSGTGPGPGPGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPIEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVRLPEELAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKVHIFKYLNIQACKIAPDLPDYDRRPMGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRREGQYQENRSSLVVTNGGVEHDLDQIDYIDSCTAEEEEDEVRPPKGLDSDSLSSQFMAYIEQRRISHEGSPVKPVPMREFQKSEDMRRYSHQSRVPVEPSSLLSLSPSHNQFSHTDLELHRRREQLVERTRREAQLAALQYEEEKIRTKQIQRDAVLDFVKSLSGVNQVGCATTLPHSSAIRPIKNDDRSNAVSSSPATETVHHSPAYSFPAAIQRNQPQRPESFLFRGAVRGETNKGHTSSLLPSTAPTTDSADSVARQNSRQREEELELIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIGVPQVINFSFFMLLNNFWCYCLEIF", "length": 719, "header": "tr|F1SQ75-1|A0A287AT50_PIG Computationally mapped isoform of Leucine rich repeats and calponin homology domain containing 3 OS=Sus scrofa OX=9823 GN=LRCH3 PE=4 SV=3 CANONICAL=A0A287AT50-1" }, "locus": { "chromosome": "13", "start_pos": 134527392, "end_pos": 134406122, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012966.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012966.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012625.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012625.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPQ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514426", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514426", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M2BKV2-1", "protein_name": "DISP complex protein LRCH3 isoform X1", "gene_name": "lrch3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAASVLLSAESAVPSFTVGHPAGAIAAGGTTHHGLSNAPGPASWNRSLDRALDEAAATGGLNLSGRKLKEFPRSAAGHDLTDTTRADLSRNRLTELPVEVCMFVSLENLNLYQNCLRSLPESLINLQSLTYLNLSRNQLSTLPAHLCRLPLKVLIACNNKLVSLPEDLGKLRQLTELDVSCNEIQTLPPQIGQLEALRDLNIRRNHLVRLPPELAELPLVRLDFSCNKVTSIPVCYRNLRHLQSIILDNNPLQSPPAQICIKGKIHIFKYLNMEACKAASELPDYDRRPLPFGSCVEDLYSGRPYGALDSGFNSVDSGDKRWSGNEPSDELSDLPLRVAEITKEQRQRRERDDHRTATHITNGTMESEMEQIDFIDSCTAEDDDEEGRSRRVESVSLSSQFMAYIERRITREGSPVKTSPSRTDDPRRQTSLHNRGGSDSSGSSSYAHNQRSAGGGVERVRREAQLAALRYEEERQKTRSVQRDAVMNFVKHKSSQSPTKLSPTDSESLYPSRRSTHTDDSALFMSDFEPLLIFEIDTDTNTIKKRPDSHKQSLSAVLLDGCVSPTMSIAPFCTQQQGEDYASPTALQSPSYPSPAALSPSRGPNQRPESYLFRLSQREEKKKGESGTQKAEPVEATPTQSPAPTGEEALLIEQLRRNIECRLKVSLPSDLGAALTDGVVLCHLANHVRPRSIPSIHVPSPAVPKLTMAKCRRNVENFLEACRRIGVPQDSLCSAGDVLEGELVCVFRLVEALLSLAPPPLRHAPSSQLAGFALFYLSIMSLLCAIYCHLVPSV", "length": 794 }, "evidence": [ { "id": "A0A287AT50", "url": "https://omabrowser.org/oma/group/A0A287AT50/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZWD1-1", "protein_name": "Leucine rich repeats and calponin homology domain containing 3", "gene_name": "Lrch3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAGLVAVVAAAEYSGPVGSGGNLSGANCGPSPGLGPGSWSRSVDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPMETCHFVSLESLNLYQNCIRYIPEAVLNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGQLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLLRLPEELAEVPLIRLDFSCNKITVIPVCYRNLRHLQVITLDNNPLQSPPAQICIKGKIHIFKYLNIQACKIAPDLPDYERRPLGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRSSVVVTNGGVDHDLDQIDYIDSCTTEEEENDVKRPKSLDTSSLSSQFLAYIEQRRISHEGSPVKPIAVRDFQKTEDMKRYSHQNRVPVEPSLVLSVPPSHNQLSHSDLELHQRGEQSVERARREAQLAALQYEGEKIRTKQIQRDAGLDFVKHKVSQNPQKQQPPGNGECPFPSRRSQHTDDSALLVSLSGLDGVSCVATRPHSSAFTPLKSNDRVDVTSSFPMTDTARHSPAYSFPAATQRNQPQRPESFLFRATVRAEASKGRASPLLSSAPATDAADSIARQREEELRLIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRKIGVPQDSLCSPSDILQLNLSVKRTVEMLLSLGAHAEESSFVSLSVQLLGFVAFYCSLMLILCVLYYRVFTYS", "length": 791 }, "evidence": [ { "id": "A0A287AT50", "url": "https://omabrowser.org/oma/group/A0A287AT50/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BGP1-1", "protein_name": "Leucine rich repeats and calponin homology domain containing 3", "gene_name": "LRCH3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAGLVAVAAAAEYSCPGASGGNLSAVNCGPNSGAGPGPGPGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPIEACHFVSLENLNLYQNCIRYVPEAILNLQALTFLNISRNQLSTLPVHLCELPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVRLPEELAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKIHIFKYLNMQACKIAPDLPDYDRRPMGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRENQYQENHSSLVVTNGGVEHELDQIDYIDSCTAEEDEDEVRPHKGLDSDSLSSQFMAYIEQRRISHEGSPIKPIPMREFQKTEDMRRYSHQNRVPAEPSSLLSVSPSHNQTDLELHRRREQLVERTRREAQLAALQYEEEKIRTKQIQRDAVLDFVKQKASQSPQKQHTPLVGECPFPSRRSQHTDDSALLVSLSGVNQVGYAAPLPPASAFRPLQNDDRSNAVSNSPTTETAHHSPAYSFPAAIQRNQPQRPESFLFRGAVRTETNKGHASPLLSSSVPTTDLKDPVTRQNSRQREEELELIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIGVPQDNLCSPSDILQLNLSVKRTVETLLSLGAHSEESSFVSLSIQLLGFVAFYCTLMLTLCMLYYWIFPL", "length": 796 }, "evidence": [ { "id": "A0A287AT50", "url": "https://omabrowser.org/oma/group/A0A287AT50/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BVU0-1", "protein_name": "DISP complex protein LRCH3", "gene_name": "Lrch3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGLVAVVAAAEYSGPVASGGNLSGATCGPSPGLGPGPGPGSWSRSVDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPMEACHFVSLESLNLYQNCIRYIPEAVLNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLLRLPEELAEVPLIRLDFSCNKITVIPVCYRNLRHLQVITLDNNPLQSPPAQICIKGKIHIFKYLNIQACKIAPDLPDYERRPLGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRSSVAVTNGGVEHDLDQIDYIDSCTTEEEENDVKQPKSLDTNSLSSQFMAYIEQRRISHEVSPVKPIAVREFQKTEDMKRYSHQNRVPVEPSLVLSMPPSHNQLSHSDLELHQRREQSIECTRREAQLAALQYEEEKIRTKQIQRDAVLDFVKQKASHNPQRQQPPGNGECSFPSRRSQHTDDSALLVSLSGLDGVSCVATRPHSSAFTPLKSENRVDVTSSFPMTETVHHSPAYSFPAATQRNQPQRPESFLFRAAVRAEANKGRASPLLLSSAPATDPTDAITRQREEELKLIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRKIGVPQEQLCLPLHILEEKGLGQVAVTVQALLELAPPKQPPPQQPQQQQPQLSAV", "length": 778 }, "evidence": [ { "id": "A0A287AT50", "url": "https://omabrowser.org/oma/group/A0A287AT50/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96II8-1", "protein_name": "DISP complex protein LRCH3", "gene_name": "LRCH3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAGLVAVAAAAEYSGTVASGGNLPGVHCGPSSGAGPGFGPGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEIPIEACHFVSLENLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLMELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVHLPEELAELPLIRLDFSCNKITTIPVCYRNLRHLQTITLDNNPLQSPPAQICIKGKVHIFKYLNIQACKIAPDLPDYDRRPLGFGSCHEELYSSRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRGSLVVTNGGVEHDLDQIDYIDSCTAEEEEAEVRQPKGPDPDSLSSQFMAYIEQRRISHEGSPVKPVAIREFQKTEDMRRYLHQNRVPAEPSSLLSLSASHNQLSHTDLELHQRREQLVERTRREAQLAALQYEEEKIRTKQIQRDAVLDFVKQKASQSPQKQHPLLDGVDGECPFPSRRSQHTDDSALCMSLSGLNQVGCAATLPHSSAFTPLKSDDRPNALLSSPATETVHHSPAYSFPAAIQRNQPQRPESFLFRAGVRAETNKGHASPLPPSAAPTTDSTDSITGQNSRQREEELELIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIGVPQEQLCLPLHILEEKGLSQVAVTVQALLELAPPKQQQHQLSAV", "length": 777 }, "evidence": [ { "id": "A0A287AT50", "url": "https://omabrowser.org/oma/group/A0A287AT50/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AT50", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "septin cytoskeleton organization", "id": "GO:0032185", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032185", "evidence": [ { "database": "UniProtKB", "id": "A0A287AT50", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" }, { "start_pos": 357, "end_pos": 359, "annotation": "n_glycosylation_sequon" }, { "start_pos": 746, "end_pos": 748, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AT50-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 799, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AT50-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AT50" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AT50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AT50" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 649, "end_pos": 764, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 }, { "start_pos": 24, "end_pos": 26 }, { "start_pos": 357, "end_pos": 359 }, { "start_pos": 746, "end_pos": 748 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AUV2-1", "uniprot_ac": "A0A287AUV2", "uniprot_id": "A0A287AUV2_PIG", "mass": { "chemical_mass": 65992.0, "monoisotopic_mass": 65992.0 }, "refseq": { "ac": "XP_020946979", "name": "protein DENND6B isoform X11", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946979" }, "gene_names": [ { "name": "DENND6B", "type": "recommended", "evidence": [ { "id": "A0A287AUV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV2" } ] }, { "name": "DENND6B", "type": "synonym", "evidence": [ { "id": "XP_020946979", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946979" } ] } ], "protein_names": [ { "name": "DENN domain containing 6B", "type": "synonym", "evidence": [ { "id": "A0A287AUV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV2/entry#names_and_taxonomy" } ] }, { "name": "protein DENND6B isoform X11", "type": "synonym", "evidence": [ { "id": "XP_020946979", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946979" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AUV2", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DENND6B", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV2", "locus": { "chromosome": "5", "start_pos": 389330, "end_pos": 376551, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000034272", "url": "https://www.ensembl.org/id/ENSSSCG00000034272" } ] } } ], "crossref": [ { "id": "ENSSSCG00000034272", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034272", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110260604", "url": "https://www.ncbi.nlm.nih.gov/gene/110260604", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024224", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024224", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CIPSRVD", "url": "https://omabrowser.org/oma/group/CIPSRVD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13677", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13677", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13677:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13677:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020946979", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946979", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AH81", "url": "https://www.uniprot.org/uniprotkb/A0A287AH81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AH81-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AH81-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUV2", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDAGSGAEPHRARGRLGAPCSGARAPGAPWARFSAWLECVCVVTFDLELGQALELVYPSDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFRIRQCGGQRRPWHTDDRHCDSGAPASLQREHAHYFGYVYFRQVKDSSARRGYFQKSLVLVSRLPFVRLFQALLSLVAPEYFDKLTPCLEAVCNEIDQWPAPVPGQTLNLPVMGVVLQVHIPSRVDKPESGPPAQRSHENLLPAPVVLSSVHELDLFRCFQPVLAHVQMLWELVLLGEPLVVLAPSPAVSSEMVLALTSCLQPLKFCCDYRPYFTVHDSEFKEFTTRTQAPPNVVLGVTNPFFIKTLQHWPHILRVGEPRMSGDLPKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLRRLLKGLQKKRPSDVQTALLRRHLLELTQSFIFPLEHYMASLMPLQKSITPWKTPPQIRPFRQDDFLRSLEHAGPQLTCVLKGDWLGLYRRFFKSPHFDGWYRQRRKEMAQKLEALHLEAICEANIEVWMKGKSEVEVVDLVLKLRERLVRAQGHQLPVKEATLKQARLYIETVISSLPKDLQVILCPP", "length": 580, "header": "tr|A0A287AUV2-1|A0A287AUV2_PIG Isoform 1 of DENN domain containing 6B OS=Sus scrofa OX=9823 GN=DENND6B PE=3 SV=1 CANONICAL=A0A287AUV2-1" }, "isoforms": [ { "isoform_ac": "A0A287AH81-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV2/entry#A0A287AH81-1", "sequence": { "sequence": "MDAGSGAEPHRARGRLGAPCSGARAPGAPWARFSAWLECVCVVTFDLELGQALEKSSICYLSFPDSHSGCLGDTQFSFRIRQCGGQRRPWHTDDRHCDSGAPASLQREHAHYFGYVYFRQVKDSSARRGYFQKSLVLVSRLPFVRLFQALLSLVAPEYFDKLTPCLEAVCNEIDQWPAPVPGQTLNLPVMGVVLQVHIPSRVDKPESGPPAQRSHENLLPAPVVLSSVHELDLFRCFQPVLAHVQMLWELVLLGEPLVVLAPSPAVSSEMVLALTSCLQPLKFCCDYRPYFTVHDSEFKEFTTRTQAPPNVVLGVTNPFFIKTLQHWPHILRVGEPRMSGDLPKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLRRLLKGLQKKRPSDVQTALLRRHLLELTQSFIFPLEHYMASLMPLQKSITPWKTPPQIRPFRQDDFLRSLEHAGPQLTCVLKGDWLGLYRRFFKSPHFDGWYRQRRKEMAQKLEALHLEAICEANIEVWMKGKSEVEVVDLVLKLRERLVRAQGHQLPVKEATLKQARLYIETVISSLPKDLQVILCPP", "length": 567, "header": "tr|A0A287AH81-1|A0A287AUV2_PIG Computationally mapped isoform of DENN domain containing 6B OS=Sus scrofa OX=9823 GN=DENND6B PE=3 SV=1 CANONICAL=A0A287AUV2-1" }, "locus": { "chromosome": "5", "start_pos": 387213, "end_pos": 376648, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044352.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044352.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043217.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043217.1" } ] } }, { "isoform_ac": "A0A287AUV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV2/entry#A0A287AUV2-1", "sequence": { "sequence": "MDAGSGAEPHRARGRLGAPCSGARAPGAPWARFSAWLECVCVVTFDLELGQALELVYPSDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFRIRQCGGQRRPWHTDDRHCDSGAPASLQREHAHYFGYVYFRQVKDSSARRGYFQKSLVLVSRLPFVRLFQALLSLVAPEYFDKLTPCLEAVCNEIDQWPAPVPGQTLNLPVMGVVLQVHIPSRVDKPESGPPAQRSHENLLPAPVVLSSVHELDLFRCFQPVLAHVQMLWELVLLGEPLVVLAPSPAVSSEMVLALTSCLQPLKFCCDYRPYFTVHDSEFKEFTTRTQAPPNVVLGVTNPFFIKTLQHWPHILRVGEPRMSGDLPKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLRRLLKGLQKKRPSDVQTALLRRHLLELTQSFIFPLEHYMASLMPLQKSITPWKTPPQIRPFRQDDFLRSLEHAGPQLTCVLKGDWLGLYRRFFKSPHFDGWYRQRRKEMAQKLEALHLEAICEANIEVWMKGKSEVEVVDLVLKLRERLVRAQGHQLPVKEATLKQARLYIETVISSLPKDLQVILCPP", "length": 580, "header": "tr|A0A287AUV2-1|A0A287AUV2_PIG Isoform 1 of DENN domain containing 6B OS=Sus scrofa OX=9823 GN=DENND6B PE=3 SV=1 CANONICAL=A0A287AUV2-1" }, "locus": { "chromosome": "5", "start_pos": 387213, "end_pos": 376648, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052891.2", "url": "https://www.ensembl.org/id/ENSSSCT00000052891.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047890.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047890.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AH81", "url": "https://www.uniprot.org/uniprotkb/A0A287AH81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XV55-1", "protein_name": "DENN domain containing 6B", "gene_name": "DENND6B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAQSAFTWIFSWMLQKSQRSLYLRCWMISGVLRGSAVTGMLTKHALPGLPLSMHCKPRLSDSSSQISEAQTELCIPSSFSCPSFAICSCCEQHLWPARRPEPLNKCSDRCCALRQAWWALGVSRLVYPYDFRLTEKEKTSICYLSFPDSYSGGLGDTQFSFRLRQSGGQRTTHYEDDGKYNREAPLTLQRESAHYFGYVYFRQVKDSSMKRGYFQKSLVLVSRLPYVNLFQSLLQLIAPEYFDKLEPCLEAVCNEIDQWPPPVPGQTLNLPVMGVVIQVRIPSRVDKPGSSPVKQFNQENLLPAPLVLPSIHELDLFRCFQPVLIHVQMLWELMLLGEPIVVMAPSPTVSSEMVLALTSCLAPLRYCCDYRPYFTIHDSEFKEYTTRTQAPPNIVVGVTNPFFIKTLQHWPHILRVGELKMSGDLPKQVKVKKLTKLKTLDTKPGIYTSYKTFLHKDKTLIKRLLKGIQRKRPSEVQSALLRRHLLELTQSFIIPLEHYIASLMPLQRAITPWKNPPQIRPFRQDDFMKTLEHAGPQLTCVLKGDWLGLYRRFFRSPNFDGWYRQRHKEMTQKLEALHLEAICEANIVAWMKDKSEVEIVDLVLKLREKLVRARCQHLPVKEETLQRVGLYIETIIDSLPEDLQAVLHHH", "length": 650 }, "evidence": [ { "id": "A0A287AUV2", "url": "https://omabrowser.org/oma/group/A0A287AUV2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7F6X6-1", "protein_name": "Protein DENND6B isoform X1", "gene_name": "Dennd6b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEVPLATGPRQAGGELGTTRSTSSGRAARASAIPWARFSAWLECVCVVTFDLELGQALELVYPSDFQLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSLWHGDDKPYNNKAPLALQREPAHYLGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQSLLSLIAPEYFEKLAPCLEAVCNEIDQWPAPVPGQTLNLPVMGVVIQVHIPSRVDKLESNPPKQCDQENLLPAPVVLTSVHELDLFRCFRPVLTHVQTLWELMLLGEPLVVLAPSPDVSSELVLALTSCLQPLKFCCDFRPYFTIHDSEFKELTTRTQAPPNVVLGVTNPFFIKTLQHWPHVLRIGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTSYTAHLHRDKALLKRLLKGVQKKRPWDAQSALLRRHLLELTQSFIIPLEHYMASLMPLQKSITPWKSPPQICPFRQDDFLRSLEHSGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMAQKLEALHLEAISEHRGLDEGQVGGGSGRPSPETSGKAGAGTEPPGPREGGDTAACSAVHRHSYWLPAQGPTSSPVPSLGQSQLVWSWRPKSAKFPLR", "length": 603 }, "evidence": [ { "id": "A0A287AUV2", "url": "https://omabrowser.org/oma/group/A0A287AUV2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZAE3-1", "protein_name": "DENN domain containing 6B", "gene_name": "Dennd6b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVLVGPGPRQAGGGLGAARSTSSGRAARTTEVPWARFSAWLECVCVVTFDLELGQALELVYPSDFRLTDKEKSNICYLAFPDSHSGCLGDTQFSFRMRQCGGQKSLWHVDDRSYNSKAPLALQREPAHYLGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQSLLSLIAPEYFEKLAPCLEAVCNEIDQWPAPVPGQTLNLPVMGVVIQVRIPSRVDKLESSPPKQCDQENLLPAPVVLTSVHELDLFRCFRPVLTHVQTLWELMLLGEPLVVLAPSPDVSSELVLALTSCLQPLKFCCDFRPYFTIHDSEFKELTTRTQAPPNVVLGVTNPFFIKTLQHWPHVLRIGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTSYTAHLHRDKALLKRLLKGIQKKRPWDVQSALLRRYLLELTQSFIIPLEHYMASLMPLQKNITPWKSPPQICPFRQDDFLQSLEHAGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMAQKLEALHLEAICEANIEAWMKDKSEVEVVDLVLKLREKLVRAQGHQLPVKEVTLQRVQLYIDTVIGSLPKDLQAVLCPP", "length": 585 }, "evidence": [ { "id": "A0A287AUV2", "url": "https://omabrowser.org/oma/group/A0A287AUV2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8NEG7-1", "protein_name": "Protein DENND6B", "gene_name": "DENND6B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDALLGTGPRRARGCLGAAGPTSSGRAARTPAAPWARFSAWLECVCVVTFDLELGQALELVYPNDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSPWHADDRHYNSRAPVALQREPAHYFGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQALLSLIAPEYFDKLAPCLEAVCSEIDQWPAPAPGQTLNLPVMGVVVQVRIPSRVDKSESSPPKQFDQENLLPAPVVLASVHELDLFRCFRPVLTHMQTLWELMLLGEPLLVLAPSPDVSSEMVLALTSCLQPLRFCCDFRPYFTIHDSEFKEFTTRTQAPPNVVLGVTNPFFIKTLQHWPHILRVGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLKRLLKGVQKKRPSDVQSALLRRHLLELTQSFIIPLEHYMASLMPLQKSITPWKTPPQIQPFSQDDFLRSLEHAGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMALKLEALHLEAICEANIETWMKDKSEVEVVDLVLKLREKLVRAQGHQLPVKEATLQRAQLYIETVIGSLPKDLQAVLCPP", "length": 585 }, "evidence": [ { "id": "A0A287AUV2", "url": "https://omabrowser.org/oma/group/A0A287AUV2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D9V7-1", "protein_name": "Protein DENND6B", "gene_name": "Dennd6b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVPVGPGPRQAGGGLGATRSSSSGRAARTAEMPWARFSAWLECVCVVTFDLELGQALELVYPSDFRLTDKEKSSICYLAFPDSHSGCLGDTQFSFRMRQCGGQRSLWQVDDRSYNNKAPLALQREPAHYLGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQSLLSLIAPEYFEKLAPCLEAVCNEIDQWPAPVPGQTLNLPIMGVVIQVRIPSRVDKLESSPPKQCDQENLLPAPVVLTSVHELDLFRCFRPVLTHVQTLWELMLLGEPLVVLAPSPDVSSELVLALTSCLQPLKFCCDFRPYFTIHDSEFKELTTRTQAPPNVVLGVTNPFFIKTLQHWPHVLRIGEPKMSGDLPKQVKLKKPSRLKTLDTKPGLYTSYTAHLHRDKALLKRLLKGVQKKRPWDVQSALLRRHLLELTQSFIIPLEHYMASLMPLQKNITPWKSPPQICPFRQDDFLRSLEHAGPQLTCILKGDWLGLYRRFFKSPHFDGWYRQRHKEMAQKLEALHLEAICEANIEAWMKDKSEVEVVDLVLKLREKLVRAQGHQLPVKEVTLQRAQLYIDTVIGSLPKDLQAVLCPP", "length": 585 }, "evidence": [ { "id": "A0A287AUV2", "url": "https://omabrowser.org/oma/group/A0A287AUV2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUV2", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUV2", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AUV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV2" }, { "id": "PS50211", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50211" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UDENN", "eco_id": "ECO_0000259", "start_pos": 38, "end_pos": 499, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AQP5-1", "uniprot_ac": "A0A287AQP5", "uniprot_id": "A0A287AQP5_PIG", "mass": { "chemical_mass": 52044.0, "monoisotopic_mass": 52044.0 }, "refseq": { "ac": "XP_020920608", "name": "nuclear receptor ROR-beta isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920608" }, "gene_names": [ { "name": "RORB", "type": "recommended", "evidence": [ { "id": "A0A287AQP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ] }, { "name": "RORB", "type": "synonym", "evidence": [ { "id": "XP_020920608", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920608" } ] } ], "protein_names": [ { "name": "RAR related orphan receptor B", "type": "synonym", "evidence": [ { "id": "A0A287AQP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5/entry#names_and_taxonomy" } ] }, { "name": "nuclear receptor ROR-beta isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020920608", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920608" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RORB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5", "locus": { "chromosome": "1", "start_pos": 227772671, "end_pos": 227574648, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005268", "url": "https://www.ensembl.org/id/ENSSSCG00000005268" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005268", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005268", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06939", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06939", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06968", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06968", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100739111", "url": "https://www.ncbi.nlm.nih.gov/gene/100739111", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001628", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001628", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044101", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044101", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739111", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739111", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TIACKIC", "url": "https://omabrowser.org/oma/group/TIACKIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJB4", "url": "https://www.orthodb.org/?gene=F1SJB4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45805", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45805", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45805:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45805:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00104", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00104", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00105", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00105", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-383280", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-383280", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020920608", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920608", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ALC9", "url": "https://www.uniprot.org/uniprotkb/A0A287ALC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALC9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9M5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9M5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9M5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9M5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJB4", "url": "https://www.uniprot.org/uniprotkb/F1SJB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJB4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJB4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNNEASGTYANGHVIDLPKSEGYYSVDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMTEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCATVCK", "length": 459, "header": "tr|A0A287AQP5-1|A0A287AQP5_PIG Isoform 1 of RAR related orphan receptor B OS=Sus scrofa OX=9823 GN=RORB PE=3 SV=1 CANONICAL=A0A287AQP5-1" }, "isoforms": [ { "isoform_ac": "A0A287ALC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5/entry#A0A287ALC9-1", "sequence": { "sequence": "MCENELKTKADATAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNNEASGTYANGHVIDLPKSEGYYSVDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMTEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCATVCK", "length": 470, "header": "tr|A0A287ALC9-1|A0A287AQP5_PIG Computationally mapped isoform of RAR related orphan receptor B OS=Sus scrofa OX=9823 GN=RORB PE=3 SV=1 CANONICAL=A0A287AQP5-1" }, "locus": { "chromosome": "1", "start_pos": 227769694, "end_pos": 227694494, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064905.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064905.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044715.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044715.1" } ] } }, { "isoform_ac": "A0A287AQP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5/entry#A0A287AQP5-1", "sequence": { "sequence": "MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNNEASGTYANGHVIDLPKSEGYYSVDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMTEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCATVCK", "length": 459, "header": "tr|A0A287AQP5-1|A0A287AQP5_PIG Isoform 1 of RAR related orphan receptor B OS=Sus scrofa OX=9823 GN=RORB PE=3 SV=1 CANONICAL=A0A287AQP5-1" }, "locus": { "chromosome": "1", "start_pos": 227769694, "end_pos": 227575348, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037918.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037918.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046379.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046379.1" } ] } }, { "isoform_ac": "A0A5G2R9M5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5/entry#A0A5G2R9M5-1", "sequence": { "sequence": "MLRPDLLSSTFRLATTSLFWESQPGARVPWKCNCKPLSTCPPPHSFSSWPFCISCGRAGTLLSSWLALQGPDNKVGKGQLRPSYSPSPGATAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNNEASGTYANGHVIDLPKSEGYYSVDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMTEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCATVCK", "length": 548, "header": "tr|A0A5G2R9M5-1|A0A5G2R9M5_PIG Computationally mapped isoform of RAR related orphan receptor B OS=Sus scrofa OX=9823 GN=RORB PE=3 SV=1 CANONICAL=A0A287AQP5-1" }, "locus": { "chromosome": "1", "start_pos": 227769694, "end_pos": 227576297, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087413.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087413.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070829.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070829.1" } ] } }, { "isoform_ac": "F1SJB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5/entry#F1SJB4-1", "sequence": { "sequence": "MTTRSGRAATPCEGDWSLNLSFSPEVTVSMKHSKAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNNEASGTYANGHVIDLPKSEGYYSVDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMTEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCATVCK", "length": 491, "header": "tr|F1SJB4-1|A0A287AQP5_PIG Computationally mapped isoform of RAR related orphan receptor B OS=Sus scrofa OX=9823 GN=RORB PE=3 SV=4 CANONICAL=A0A287AQP5-1" }, "locus": { "chromosome": "1", "start_pos": 227769694, "end_pos": 227575316, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005803.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005803.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005659.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005659.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJB4", "url": "https://www.uniprot.org/uniprotkb/F1SJB4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739111", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739111", "resource": "KEGG Pathway" }, { "id": "R-SSC-383280", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-383280", "resource": "Reactome", "description": "Nuclear Receptor transcription pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MWS0-1", "protein_name": "RAR related orphan receptor B", "gene_name": "RORB", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MCENELKTKADATAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYGSSISNGLSNLNNEASGTYANGHVIDLPKSEGYYNVDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCATVCK", "length": 470 }, "evidence": [ { "id": "A0A287AQP5", "url": "https://omabrowser.org/oma/group/A0A287AQP5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8R1B8-2", "protein_name": "Nuclear receptor ROR-beta", "gene_name": "Rorb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCENQPKTKADGTAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDLPKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCAAVCK", "length": 470 }, "evidence": [ { "id": "A0A287AQP5", "url": "https://omabrowser.org/oma/group/A0A287AQP5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q92753-2", "protein_name": "Nuclear receptor ROR-beta", "gene_name": "RORB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCENQLKTKADATAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNNETSGTYANGHVIDLPKSEGYYNVDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMTEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPEIVNTLFPPLYKELFNPDCATGCK", "length": 470 }, "evidence": [ { "id": "A0A287AQP5", "url": "https://omabrowser.org/oma/group/A0A287AQP5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" }, { "name": "regulation of circadian rhythm", "id": "GO:0042752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042752", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" }, { "name": "retinal rod cell development", "id": "GO:0046548", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046548", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" }, { "name": "negative regulation of osteoblast differentiation", "id": "GO:0045668", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045668", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" }, { "name": "retinal cone cell development", "id": "GO:0046549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046549", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" }, { "name": "nuclear receptor activity", "id": "GO:0004879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004879", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" }, { "name": "melatonin receptor activity", "id": "GO:0008502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008502", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQP5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQP5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AQP5", "database": "UniProtKB", "url": 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"MSEVKSRKKSGPRGASAEPGKRSEAGKSPDARGSGGGGWADPRTGVSLLSLGTCLGLAWFVFRQSEKFAEVENQYQLLKMETNEFRGLQSRISLISEKLESTESILQEATSSMSLVTQFEQEVSSLQSIVHDIQNSEEMLAQKMQSLSEKFQNVTDFWKKSLEEMNVNTDIFKSESKHIHSQVTVQINSAEQEIKLLTERLKDLEDSTLRNIRTVKRQEEEDLLRVEEQLGSDTKAVEKLEEEQHALFARDEDLTNKLSSYAPKVEECKTHLPTIESAIRSVLRVSQDLIGTEKKMEDLTLQMFNMEDDMLKAVSEIMEMQKILEGIQYDNSILKMQNELDVLKEKVHDFIVHSSTREKGTPAEYNLENKGMDSDF", "length": 376, "header": "tr|A0A287AQU0-1|A0A287AQU0_PIG Isoform 1 of IKBKB interacting protein OS=Sus scrofa OX=9823 GN=IKBIP PE=1 SV=1 CANONICAL=A0A287AQU0-1" }, "locus": { "chromosome": "5", "start_pos": 85269365, "end_pos": 85258859, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050508.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050508.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046327.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046327.1" } ] } }, { "isoform_ac": "A0A287BCM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQU0/entry#A0A287BCM3-1", "sequence": { "sequence": "MSEVKSRKKSGPRGASAEPGKRSEAGKSPDARGSGGGGWADPRTGVSLLSLGTCLGLAWFVFRQSEKFAEVENQYQLLKMETNEFRGLQSRISLISEKCQKSEAIIEQLKSFQILTHLKRLQEEIYEVKTWSNRITEKQNILNSNLTTLSQDVTKIDQSTTSMAKDVGLKITTVKTDIRRISGLVTDVTSLKDSVQELENKIEKVEKNTVKNIGDLLSSSIDRTAMLRKTASENSQRINSVKRILSELQSDFNKHTDRFLSLESDRAKVLKTVTFANDLKPKVHNLKKDFSRLEPLVNDLTLRIGRLVTDLLQREKEIAFLNEKISNLTTVRAEIKDMKDEIKHISDMD", "length": 349, "header": "tr|A0A287BCM3-1|A0A287BCM3_PIG Computationally mapped isoform of IKBKB interacting protein OS=Sus scrofa OX=9823 GN=IKBIP PE=1 SV=1 CANONICAL=A0A287AQU0-1" }, "locus": { "chromosome": "5", "start_pos": 85278070, "end_pos": 85258859, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066079.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066079.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050190.1", "url": "https://www.ensembl.org/id/ENSSSCP00000050190.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQU0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQU0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q5EAJ6-1", "protein_name": "Inhibitor of nuclear factor kappa-B kinase-interacting protein", "gene_name": "Ikbip", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEVKSRKKPGPKVAAPEPEKRSDGRKNPEARGGAGWADPRTGLSLLSLATSLGLAWLVFQQSEKFAKVENQYRLLQTESSEFQGLQSKISLISNKLESTENTLQEATSSMSLMTQFEQEVAGLQRSIHDIENSEEMLTQKLQNLNEKFQNITDLWKRTLVEMSDNTAVFKSEAKSTHSEVTLKINSAEQEIKLLTERLKDLEDSTLRNIRTVSRQEEEDLLRVEAQLSSDTKAVEKLEEEQRTLLARDEDLTDKLSSYEPKVEECKAHLPTIENAVHSVLRVSQDLIGTERKMEELTVQMFNMEDDMLKAVSEIMEMQNTLEGIQYDNSLLKMQNELVVLKGKVHDFMAYSSAGEKGTLEEYNLENKGTDDY", "length": 373 }, "evidence": [ { "id": "A0A287AQU0", "url": "https://omabrowser.org/oma/group/A0A287AQU0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70UQ0-1", "protein_name": "Inhibitor of nuclear factor kappa-B kinase-interacting protein", "gene_name": "IKBIP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AQU9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102161927", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102161927", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4ILH2-1", "protein_name": "Epoxide hydrolase 4", "gene_name": "ephx4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": 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"evidence": [ { "database": "UniProtKB", "id": "A0A287AQU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AQU9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AQU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQU9" }, { "id": "PF00561", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AB hydrolase-1", "eco_id": "ECO_0000259", "start_pos": 94, "end_pos": 339, "start_aa": "Pro", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], 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"XP_020923699", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923699" } ] }, { "name": "p116Rip", "type": "synonym", "evidence": [ { "id": "A0A287AQW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AQW0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Targets myosin phosphatase to the actin cytoskeleton. Required for the regulation of the actin cytoskeleton by RhoA and ROCK1. Depletion leads to an increased number of stress fibers in smooth muscle cells through stabilization of actin fibers by phosphorylated myosin. 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"Protein Classification" ] }, { "id": "IPR052223", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052223", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR17271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17271:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17271:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020923699", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923699", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AQW0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQW0-1", "url": 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"MSAAKENPCRKFQANIFNKSKCQNCFKPRESHLLNDEDLTQAKPIYGGWLLLAPDGTDFDNPVHRSRKWQRRFFVLYEHGLLRYALDEMPTTLPQGTINMNQCSDVVDGEARTGQKFSLCILTPEKDHFIRAETKEIISGWLEMLAVYPRTNKQNQKKKRKVEPPTPQEPGPAKVAVTSSSSSIPSAEKVPPTKSTLWQEEMRAKDQSDGSSLSPAQSPSQSQPPAASTLREPGLESRDEESATSSDRVDGGRKVRVESGYFSLEKTKQDVKAEEQQLPPPLSPPSPSAPNTRRSQVIEKFEALDIEKAEHMETNASAGPSPSSDTRQGRSEKRAFPRKRDLPSDAPLPDTSASPLSPHRRAKSLDRRSTESSLTPDLLNFKKGWLTKQYEDGQWKKHWFVLADQSLRFYRDSVAEEAADLDGEIDLSTCCDVTEYPVQRNYGFQIHTKEGAFTLSAMTSGIRRNWIQTIVKHVHPTSAPDVTSSLPQEKKRSSSPLETCPRPRETQDGEPREPDPEQKRSRARERRREGRSKTFDWAEFRPIQQALAQERAGGAPGPPDAHPEAEPGELERERARRREERRKRAEGLGADDAALRMEVDRGPGPPVTTALRTQNVHVEIEQRWHQVETTPLREEKQVPIAPLHLSSEDGGDRLSTHELTSLLEKELEQSQKEASDLLEQNRLLQDQLRVALGREQSAREGYVLQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQRSQISSVNSDIEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEISRLRTLLTGDTSGEAAGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIVRAKADCDIGRLKEQLKAATEALGEKPPENTPVAGYDIMKSKSNPDFLKKDRSCVSRQIRSIRSKSLKEGLTVHDRLKLFESRDLQQD", "length": 1022, "header": "tr|A0A287AQW0-1|A0A287AQW0_PIG Isoform 1 of Myosin phosphatase Rho-interacting protein OS=Sus scrofa OX=9823 GN=MPRIP PE=4 SV=2 CANONICAL=A0A287AQW0-1" }, "isoforms": [ { "isoform_ac": "A0A287AQW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQW0/entry#A0A287AQW0-1", "sequence": { "sequence": 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"length": 1022, "header": "tr|A0A287AQW0-1|A0A287AQW0_PIG Isoform 1 of Myosin phosphatase Rho-interacting protein OS=Sus scrofa OX=9823 GN=MPRIP PE=4 SV=2 CANONICAL=A0A287AQW0-1" }, "locus": { "chromosome": "12", "start_pos": 61185803, "end_pos": 61078207, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045042.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045042.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046255.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046255.2" } ] } }, { "isoform_ac": "A0A5G2R6A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQW0/entry#A0A5G2R6A7-1", "sequence": { "sequence": "KASPCPSLGCWSLLWPPAGTEPAPPVLWSRRGQRPGVVLAQPVLVWAVLPALAALAGAALIQVVPCPVWVPGGWVAGSVKAESWAPGAGSDWHTPLSRWLEMLAVYPRTNKQNQKKKRKVEPPTPQEPGPAKVAVTSSSSSIPSAEKVPPTKSTLWQEEMRAKDQSDGSSLSPAQSPSQSQPPAASTLREPGLESRDEESATSSDRVDGGRKVRVESGYFSLEKTKQDVKAEEQQLPPPLSPPSPSAPNTRRSQVIEKFEALDIEKAEHMETNASAGPSPSSDTRQGRSEKRAFPRKRDLPSDAPLPDTSASPLSPHRRAKSLDRRSTESSLTPDLLNFKKGWLTKQYEDGQWKKHWFVLADQSLRFYRDSVAEEAADLDGEIDLSTCCDVTEYPVQRNYGFQIHTKEGAFTLSAMTSGIRRNWIQTIVKHVHPTSAPDVTSSLPQEKKRSSSPLETCPRPRETQDGEPREPDPEQKRSRARERRREGRSKTFDWAEFRPIQQALAQERAGGAPGPPDAHPEAEPGELERERARRREERRKRAEGLGADDAALRMEVDRGPGPPVTTALRTQNVHVEIEQRWHQVETTPLREEKQVPIAPLHLSSEDGGDRLSTHELTSLLEKELEQSQKEASDLLEQNRLLQDQLRVALGREQSAREGYVLQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQRSQISSVNSDIEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEISRLRTLLTGDTSGEAAGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIVRAKADCDIGRLKEQLKAATEALGEKPPENTPVAGYDIMKSKSNPDFLKKDRSCVSRQIRSIRSKSVIEQVSWEN", "length": 967, "header": "tr|A0A5G2R6A7-1|A0A287AQW0_PIG Computationally mapped isoform of Myosin phosphatase Rho-interacting protein OS=Sus scrofa OX=9823 GN=MPRIP PE=4 SV=1 CANONICAL=A0A287AQW0-1" }, "locus": { "chromosome": "12", "start_pos": 61118455, "end_pos": 61081133, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068107.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068107.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069656.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069656.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R6A7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6A7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQW0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQW0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQW0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQW0" } ], "pmid": "" }, { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQW0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQW0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AQW0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1022, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": 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"https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GWGSVQD", "url": "https://omabrowser.org/oma/group/GWGSVQD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24252", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24252", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24252:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24252:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020942405", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942405", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AQX4", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD16-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6K3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6K3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6K3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6K3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEIPETHPAPRGRCLWILTALLLLAAPAVPDAAKTTGPPACGKPQQLNRIVGGEDSMDAEWPWVVSIQKNGTHHCAGSLLTSHWVVTAAHCFKGLNKLAQFSVLLGAWQLGNPGPRSQEVGIARVQPHPVYSWKEGSRADIALVHLERSIQFSERVLPICLPDSSVRLPPGTDCWIAGWGSIHDGVPLPRPQTLQKLKVPIIDSGICSRLYWRGTGEGAVTEDMLCAGYLEGQRDACLGDSGGPLMCQVEGTWLLAGVISWGEGCAERNRPGVYISLAAHRSWVQRIVQGVQLGGHAQGSRPAGRRGRASGVRRAPGAGRDHRGQGAARRPRGASSL", "length": 337, "header": "tr|A0A287AQX4-1|A0A287AQX4_PIG Isoform 1 of tryptase OS=Sus scrofa OX=9823 GN=PRSS22 PE=4 SV=3 CANONICAL=A0A287AQX4-1" }, "isoforms": [ { "isoform_ac": "A0A287AQX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX4/entry#A0A287AQX4-1", "sequence": { "sequence": "MEIPETHPAPRGRCLWILTALLLLAAPAVPDAAKTTGPPACGKPQQLNRIVGGEDSMDAEWPWVVSIQKNGTHHCAGSLLTSHWVVTAAHCFKGLNKLAQFSVLLGAWQLGNPGPRSQEVGIARVQPHPVYSWKEGSRADIALVHLERSIQFSERVLPICLPDSSVRLPPGTDCWIAGWGSIHDGVPLPRPQTLQKLKVPIIDSGICSRLYWRGTGEGAVTEDMLCAGYLEGQRDACLGDSGGPLMCQVEGTWLLAGVISWGEGCAERNRPGVYISLAAHRSWVQRIVQGVQLGGHAQGSRPAGRRGRASGVRRAPGAGRDHRGQGAARRPRGASSL", "length": 337, "header": "tr|A0A287AQX4-1|A0A287AQX4_PIG Isoform 1 of tryptase OS=Sus scrofa OX=9823 GN=PRSS22 PE=4 SV=3 CANONICAL=A0A287AQX4-1" }, "locus": { "chromosome": "3", "start_pos": 39370053, "end_pos": 39365990, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042329.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042329.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046270.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046270.3" } ] } }, { "isoform_ac": "A0A5G2QD16-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX4/entry#A0A5G2QD16-1", "sequence": { "sequence": "MEIPETHPAPRGRCLWILTALLLLAAPAVPDAAKTTGPPACGKPQQLNRIVGGEDSMDAEWPWVVSIQKNGTHHCAGSLLTSHWVVTAAHCFKGSLNKLAQFSVLLGAWQLGNPGPRSQEVGIARVQPHPVYSWKEGSRADIALVHLERSIQFSERVLPICLPDSSVRLPPGTDCWIAGWGSIHDGVPLPRPQTLQKLKVPIIDSGICSRLYWRGTGEGAVTEDMLCAGYLEGQRDACLGDSGGPLMCQVEGTWLLAGVISWGEGCAERNRPGVYISLAAHRSWVQRIVQGVQLGGHAQGSARRAPGTSFRGAARSR", "length": 317, "header": "tr|A0A5G2QD16-1|A0A287AQX4_PIG Computationally mapped isoform of tryptase OS=Sus scrofa OX=9823 GN=PRSS22 PE=4 SV=1 CANONICAL=A0A287AQX4-1" }, "locus": { "chromosome": "3", "start_pos": 39370053, "end_pos": 39366051, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089048.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089048.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062015.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062015.1" } ] } }, { "isoform_ac": "A0A5G2R6K3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX4/entry#A0A5G2R6K3-1", "sequence": { "sequence": "MEIPETHPAPRGRCLWILTALLLLAAPAVPDAAKTTGPPACGKPQQLNRIVGGEDSMDAEWPWVVSIQKNGTHHCAVPLPRPQTLQKLKVPIIDSGICSRLYWRGTGEGAVTEDMLCAGYLEGQRDACLGDSGGPLMCQVEGTWLLAGVISWGEGCAERNRPGVYISLAAHRSWVQRIVQGVQLGGHAQGSARRAPGTSFRGAARSR", "length": 207, "header": "tr|A0A5G2R6K3-1|A0A287AQX4_PIG Computationally mapped isoform of tryptase OS=Sus scrofa OX=9823 GN=PRSS22 PE=4 SV=1 CANONICAL=A0A287AQX4-1" }, "locus": { "chromosome": "3", "start_pos": 39370053, "end_pos": 39366051, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068494.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068494.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069757.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069757.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD16" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D4AAE4-1", "protein_name": "Serine protease 22", "gene_name": "Prss22", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVISRPPLALGGDQFRTLILLVLLTSTATVSAANIRGSPDCGKPQQLNRVVGGEDSADAQWPWIVSILKNGSHHCAGSLLTNRWVVSAAHCFSSNMDKPSPYSVLLGAWKLGNPGPRSQKVGIASVLPHPRYSRKEGTHADIALVRLERPIQFSERILPICLPDSSVHLPPNTNCWIAGWGSIQDGVPLPRPQTLQKLKVPIIDPELCKSLYWRGAGQEAITEDMLCAGYLEGKRDACLGDSGGPLMCQVDDHWLLTGIISWGEGCAERNRPGVYTSLLAHRPWVQRIVQGVQLRGRLADSGDTGSS", "length": 307 }, "evidence": [ { "id": "A0A287AQX4", "url": "https://omabrowser.org/oma/group/A0A287AQX4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BNJ9-1", "protein_name": "tryptase", "gene_name": "PRSS22", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDAIKTAGPPACGKRLQLNRIVGGEDSSDAEWPWVVSIRKNGTHHCAGSLLTSRWVLTAAHCFKDNLDKPTQFSVLLGAWQLGNPGPRSQEVGIAWAQPHPVYSWKEGSRADIALVRLERAIQFSERVLPICLPDSTVQLSPDTNCWIAGWGSVHDGVPLSHPQTLQKLKVPIIDSATCSRLYWRGAGQGAITEDMLCAGYLEGERDACLGDSGGPLMCQVEGTWLLAGVISWGEGCAQRNRPGVYISLAAHRSWVQRIVQGVQLRGRSQRGGPTGRRGRALGARRPRGAERRRAD", "length": 296 }, "evidence": [ { "id": "A0A287AQX4", "url": "https://omabrowser.org/oma/group/A0A287AQX4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9ER10-1", "protein_name": "Brain-specific serine protease 4", "gene_name": "Prss22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMISRPPPALGGDQFSILILLVLLTSTAPISAATIRVSPDCGKPQQLNRIVGGEDSMDAQWPWIVSILKNGSHHCAGSLLTNRWVVTAAHCFKSNMDKPSLFSVLLGAWKLGSPGPRSQKVGIAWVLPHPRYSWKEGTHADIALVRLEHSIQFSERILPICLPDSSVRLPPKTDCWIAGWGSIQDGVPLPHPQTLQKLKVPIIDSELCKSLYWRGAGQEAITEGMLCAGYLEGERDACLGDSGGPLMCQVDDHWLLTGIISWGEGCAERNRPGVYTSLLAHRSWVQRIVQGVQLRGYLADSGDTGSS", "length": 307 }, "evidence": [ { "id": "A0A287AQX4", "url": "https://omabrowser.org/oma/group/A0A287AQX4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9GZN4-1", "protein_name": "Brain-specific serine protease 4", "gene_name": "PRSS22", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSGAPPALGGGCLGTFTSLLLLASTAILNAARIPVPPACGKPQQLNRVVGGEDSTDSEWPWIVSIQKNGTHHCAGSLLTSRWVITAAHCFKDNLNKPYLFSVLLGAWQLGNPGSRSQKVGVAWVEPHPVYSWKEGACADIALVRLERSIQFSERVLPICLPDASIHLPPNTHCWISGWGSIQDGVPLPHPQTLQKLKVPIIDSEVCSHLYWRGAGQGPITEDMLCAGYLEGERDACLGDSGGPLMCQVDGAWLLAGIISWGEGCAERNRPGVYISLSAHRSWVEKIVQGVQLRGRAQGGGALRAPSQGSGAAARS", "length": 317 }, "evidence": [ { "id": "A0A287AQX4", "url": "https://omabrowser.org/oma/group/A0A287AQX4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX4", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX4" } ], "pmid": "" }, { "name": "peptidase activator activity", "id": "GO:0016504", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016504", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX4", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX4" } ], "pmid": "" }, { "name": "serine-type peptidase activity", "id": "GO:0008236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008236", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX4", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX4", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein processing", "id": "GO:0016485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016485", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQX4", "url": "https://www.uniprot.org/uniprotkb/A0A287AQX4" } ], "pmid": "" }, { "name": "proteolysis", "id": 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"MDGGDDGNLVIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEECPEEVYDPRSLYERLQEQKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELKELKEYRSNLNKVGISPENKKEVEKKVAVKPIETKNKFSQAKLLAGAVKHKSSESGNSVKRLKSDPDPDDKNQEASSCVSLGSTSLSGPSIHCPSAAVCIGILPGLGAYSGSSDSESSSDSEGTINATGKIVSSIFRTNTFLEAP", "length": 254, "header": "tr|A0A287AR42-1|A0A287AR42_PIG Isoform 1 of Proteasome activator subunit 3 interacting protein 1 OS=Sus scrofa OX=9823 GN=PSME3IP1 PE=4 SV=3 CANONICAL=A0A287AR42-1" }, "isoforms": [ { "isoform_ac": "A0A287AR42-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR42/entry#A0A287AR42-1", "sequence": { "sequence": "MDGGDDGNLVIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEECPEEVYDPRSLYERLQEQKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELKELKEYRSNLNKVGISPENKKEVEKKVAVKPIETKNKFSQAKLLAGAVKHKSSESGNSVKRLKSDPDPDDKNQEASSCVSLGSTSLSGPSIHCPSAAVCIGILPGLGAYSGSSDSESSSDSEGTINATGKIVSSIFRTNTFLEAP", "length": 254, "header": "tr|A0A287AR42-1|A0A287AR42_PIG Isoform 1 of Proteasome activator subunit 3 interacting protein 1 OS=Sus scrofa OX=9823 GN=PSME3IP1 PE=4 SV=3 CANONICAL=A0A287AR42-1" }, "locus": { "chromosome": "6", "start_pos": 19141883, "end_pos": 19102333, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061444.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061444.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046531.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046531.3" } ] } }, { "isoform_ac": "A0A4X1SEG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR42/entry#A0A4X1SEG5-1", "sequence": { "sequence": "MDGGDDGNLVIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEECPEEVYDPRSLYERLQEQKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELKELKEYRINLNKVGISPENKKEVEKKVAVKPIETKNKFSQAKLLAGAVKHKSSESGNSVKRLKSDPDPDDKNQEASSCVSLGSTSLSGPSIHCPSAAVCIGILPGLGAYSGSSDSESSSDSEGTINATGKIVSSIFRTNTFLEAP", "length": 254, "header": "tr|A0A4X1SEG5-1|A0A4X1SEG5_PIG Computationally mapped isoform of Proteasome activator subunit 3 interacting protein 1 OS=Sus scrofa OX=9823 GN=PSME3IP1 PE=4 SV=1 CANONICAL=A0A287AR42-1" }, "locus": { "chromosome": "6", "start_pos": 19141883, "end_pos": 19102333, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079508.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079508.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072338.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072338.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron 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"common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3HIK7-1", "protein_name": "PSME3-interacting protein", "gene_name": "Psme3ip1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDGGDDGNLVIKKRFVSEAELDERRKRRQEEWEKVRKPEDPQECPEEAYDPRSLYERLQEQKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELLEKQRREEELEELKEYRSNLNKVGISTENKEVEKKLAVKPIETKNKFSQAKLLAGAVKHKSSESGNSVKRLKPDPDPDDKAQEAPSCMTLGSSSLSGPSIHCPSAAVCIGILPGLGAYSGSSDSESSSDSEGTINATGKIVSSIFRTNTFLEAP", "length": 253 }, "evidence": [ { "id": "A0A287AR42", "url": "https://omabrowser.org/oma/group/A0A287AR42/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q91WE2-1", "protein_name": "PSME3-interacting protein", "gene_name": "Psme3ip1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDGEDDSNLVIKKRFVSEAELDERRKRRQEEWEKVRKPEDPKECPEEAYDPRSLYERLQEQKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELEELKEYRSNLNKVGISAENKEVEKKLAVKPIETKNKFSQAKLLAGAVKHKSSESGNSVKRLKPDPDPDDKAQEAPSCMSLGSSSLSGPPSIHCPSAAVCIGILPGLGAYSGSSDSESSSDSEGTINATGKIVSSIFRTNTFLEAP", "length": 254 }, "evidence": [ { "id": "A0A287AR42", "url": "https://omabrowser.org/oma/group/A0A287AR42/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9GZU8-1", "protein_name": "PSME3-interacting protein", "gene_name": "PSME3IP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDGGDDGNLIIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEECPEEVYDPRSLYERLQEQKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELKELKEYRNNLKKVGISQENKKEVEKKLTVKPIETKNKFSQAKLLAGAVKHKSSESGNSVKRLKPDPEPDDKNQEPSSCKSLGNTSLSGPSIHCPSAAVCIGILPGLGAYSGSSDSESSSDSEGTINATGKIVSSIFRTNTFLEAP", "length": 254 }, "evidence": [ { "id": "A0A287AR42", "url": "https://omabrowser.org/oma/group/A0A287AR42/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR42", "url": "https://www.uniprot.org/uniprotkb/A0A287AR42" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR42", "url": "https://www.uniprot.org/uniprotkb/A0A287AR42" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of proteasomal protein catabolic process", "id": "GO:1901799", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901799", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR42", "url": "https://www.uniprot.org/uniprotkb/A0A287AR42" } ], "pmid": "" } ] } ] }, "pro_annotation": [], 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"MSEALTVRELAAPAFAGGAEPRIRGLLGSLEGRGLRSCRPQEGRGQQAAPPRGEMQAAPAAQVGRAAGGDPGLSSDLLLLESELAEGEARRRACGRSFPFSPESGWDQRGRAAGGEGLPACSGCGQDLLLHPEQRPQAGERPLKCAQCGKAFCHSSDLARHQRVHTRERPFECKECGKGFSQSSLLIRHQRIHTGERPYECNECGKSFIRSSSLIRHYQIHTEVRQYECSECGKAFRHRSDLIEHQRIHTGERPFECNECGKAFIRSSKLIQHQRIHTGERPYVCNECGKRFSQTSNFTQHQRIHTGEKLYECNECGKAFFLSSYLIRHQKIHTGERVYECKECGKAFLQKAHLTEHQKIHTGDRPFECKDCGKAFIQSSKLLLHQIIHTGEKPYVCSYCGKGFIQRSNFLQHQKIHTEEKLYECGHYGKEFSSTPSFQSLQDDPPEGLPLKKTPVHLGETHVGQGEGADS", "length": 471, "header": "tr|A0A287AR64-1|A0A287AR64_PIG Isoform 1 of Zinc finger protein 623 OS=Sus scrofa OX=9823 GN=ZNF623 PE=3 SV=1 CANONICAL=A0A287AR64-1" }, "isoforms": [ { "isoform_ac": "A0A287AR64-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR64/entry#A0A287AR64-1", "sequence": { "sequence": 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"-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079531.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079531.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070637.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070637.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARL7", "url": "https://www.uniprot.org/uniprotkb/A0A287ARL7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110256454", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256454", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NUG1-1", "protein_name": "CGG triplet repeat binding protein 1", "gene_name": "CGGBP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MERFGVKSTPSRNRSKTALYVTPQDRVTEFGSELHEDGGKLFCTSCNVVLNHVRKSAINDHLKSKTHTKRKAEFEEQNVRKKQRTLTASLQCNSTAQTEKTSVIQDFVKMCLEANIPLEKADHPSVRAFLSRYVKNGSSIPKSEQLRKAYLPDGYDNENQLINTEDR", "length": 167 }, "evidence": [ { "id": "A0A287ARL7", "url": "https://omabrowser.org/oma/group/A0A287ARL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4ADB4-1", "protein_name": "CGG triplet repeat binding protein 1", "gene_name": "Cggbp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISDHLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEKADHPAVRAFLSRHVKNGGSIPKSDQLRRAYLPDGYENENQLLNSQDC", "length": 167 }, "evidence": [ { "id": "A0A287ARL7", "url": "https://omabrowser.org/oma/group/A0A287ARL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3GYF2-1", "protein_name": "CGG triplet repeat-binding protein 1", "gene_name": "Cggbp1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISDHLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEKADHPAVRAFLSRHVKNGGSIPKSDQLRRAYLPDGYENENQLLNSQDC", "length": 167 }, "evidence": [ { "id": "A0A287ARL7", "url": "https://omabrowser.org/oma/group/A0A287ARL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MZ52-1", "protein_name": "CGG triplet repeat binding protein 1", "gene_name": "CGGBP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISDHLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEKADHPAVRAFLSRHVKNGGSIPKSDQLRRAYLPDGYENENQLLNSQDC", "length": 167 }, "evidence": [ { "id": "A0A287ARL7", "url": "https://omabrowser.org/oma/group/A0A287ARL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BHG9-1", "protein_name": "CGG triplet repeat-binding protein 1", "gene_name": "Cggbp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISDHLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSPAQTEKASVIQDFVKMCLEANIPLEKADHPAVRAFLSRHVKNGGSIPKSDQLRRAYLPDGYENENQLLSSQDC", "length": 167 }, "evidence": [ { "id": "A0A287ARL7", "url": "https://omabrowser.org/oma/group/A0A287ARL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UFW8-1", "protein_name": "CGG triplet repeat-binding protein 1", "gene_name": "CGGBP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISDHLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEKADHPAVRAFLSRHVKNGGSIPKSDQLRRAYLPDGYENENQLLNSQDC", "length": 167 }, "evidence": [ { "id": "A0A287ARL7", "url": "https://omabrowser.org/oma/group/A0A287ARL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARL7", "url": "https://www.uniprot.org/uniprotkb/A0A287ARL7" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARL7", "url": "https://www.uniprot.org/uniprotkb/A0A287ARL7" } ], "pmid": "" }, { "name": "epigenetic regulation of gene expression", "id": "GO:0040029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0040029", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARL7", "url": "https://www.uniprot.org/uniprotkb/A0A287ARL7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARL7", "url": "https://www.uniprot.org/uniprotkb/A0A287ARL7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARL7", "url": "https://www.uniprot.org/uniprotkb/A0A287ARL7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARL7", "url": "https://www.uniprot.org/uniprotkb/A0A287ARL7" } ], "pmid": "" }, { "name": "double-stranded DNA binding", "id": "GO:0003690", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003690", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARL7", "url": "https://www.uniprot.org/uniprotkb/A0A287ARL7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor binding", "id": "GO:0140297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140297", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARL7", "url": "https://www.uniprot.org/uniprotkb/A0A287ARL7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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"monoisotopic_mass": 24823.0 }, "refseq": { "ac": "XP_020951580", "name": "UPF0500 protein C1orf216 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951580" }, "gene_names": [ { "name": "C6H1orf216", "type": "recommended", "evidence": [ { "id": "A0A287ARN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARN3" } ] }, { "name": "C1orf216", "type": "synonym", "evidence": [ { "id": "A0A287ARN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARN3" } ] }, { "name": "C6H1orf216", "type": "synonym", "evidence": [ { "id": "XP_020951580", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951580" } ] } ], "protein_names": [ { "name": "Chromosome 6 C1orf216 homolog", "type": "synonym", "evidence": [ { "id": "A0A287ARN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ARN3/entry#names_and_taxonomy" } ] }, { "name": "UPF0500 protein C1orf216 homolog", "type": "synonym", 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"categories": [ "Genome Annotation" ] }, { "id": "IPR027812", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027812", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110261146", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261146", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GMPGKVE", "url": "https://omabrowser.org/oma/group/GMPGKVE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287ARN3", "url": "https://www.orthodb.org/?gene=A0A287ARN3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35673", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35673", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35673:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35673:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15546", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15546", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020951580", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951580", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ARN3", "url": "https://www.uniprot.org/uniprotkb/A0A287ARN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARN3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFAVQPGVAEGAQFLGGPPPAVCPPELQADSNSNFMASAKDANENWPEMPGQVEPKVMRSSSRLPSDNQGFQVPGLPEGEVRCPPEGAEIPRAGPEKMGGASTVCSPLEDNGYASSSLSIDSSSCSPEPACGTPLGPGPSDPLLPSVAQAVQQLQAQERYKEQEKEKHHVHLVMYRRLALLQWIRGLQHQLVDQQARLQESFDTILDNRKELIRCLHQRAAPSRPQDQG", "length": 229, "header": "tr|A0A287ARN3-1|A0A287ARN3_PIG Isoform 1 of Chromosome 6 C1orf216 homolog OS=Sus scrofa OX=9823 GN=C6H1orf216 PE=4 SV=1 CANONICAL=A0A287ARN3-1" }, "isoforms": [ { "isoform_ac": "A0A287ARN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARN3/entry#A0A287ARN3-1", "sequence": { "sequence": "MFAVQPGVAEGAQFLGGPPPAVCPPELQADSNSNFMASAKDANENWPEMPGQVEPKVMRSSSRLPSDNQGFQVPGLPEGEVRCPPEGAEIPRAGPEKMGGASTVCSPLEDNGYASSSLSIDSSSCSPEPACGTPLGPGPSDPLLPSVAQAVQQLQAQERYKEQEKEKHHVHLVMYRRLALLQWIRGLQHQLVDQQARLQESFDTILDNRKELIRCLHQRAAPSRPQDQG", "length": 229, "header": "tr|A0A287ARN3-1|A0A287ARN3_PIG Isoform 1 of Chromosome 6 C1orf216 homolog OS=Sus scrofa OX=9823 GN=C6H1orf216 PE=4 SV=1 CANONICAL=A0A287ARN3-1" }, "locus": { "chromosome": "6", "start_pos": 91887719, "end_pos": 91887033, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059732.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059732.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046565.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046565.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARN3", "url": "https://www.uniprot.org/uniprotkb/A0A287ARN3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110261146", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261146", "resource": "KEGG Pathway" } ], 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"AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035397", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035397", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24070", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24070", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ARP2", "url": "https://www.uniprot.org/uniprotkb/A0A287ARP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARP2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "CATTGTPQKIRLRLAKYRLVVVCGGGVGKSALTIQFIQSYVVTDYDPTIEDSYTKQCVLDDRAGRLDILDTAGQEEFGAMREQYMRTGKGFLLVFSVTDRGSFEEISKFQRQILRAKDLALDHQRQRRKGQQVARQLKVTYMEASAKIRMNVDQAIHELILVIRKFQEQECPPSPEPIWKEKDKKGCHCVIF", "length": 192, "header": "tr|A0A287ARP2-1|A0A287ARP2_PIG Isoform 1 of RAS related 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287ARP2-1" }, "isoforms": [ { "isoform_ac": "A0A287ARP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARP2/entry#A0A287ARP2-1", "sequence": { "sequence": 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"MFGLKLKKKKKKAEKGLILANKGAQDGQGDVEALQEGPSHQEGLGGDLIYDSASISPVPSAPPKRRAKLLTKIHDGEVRSQNYQIAINITEARQLVGENIDPVVIIEIGDEKKQSTVKEGTNSPFYNEYFVFDFTGPQLHLFDKIIKISVFHHKLIGSVLIGSFKVDLGTVYNQPGHQFCDKWAVLTDPGDIRTGAKGYLKCDISMTGKGDVLKPNPKTSDAEEQIEKNLLIPQGYPSERPWARFFVRLYRAEGLPKMNSSLMANVTKAFVGDSKDLVDPFVEVSFAGQMGRTTVQKNCADPVWHEQVVFKEMFPPLCRRVKIQVWDEGSMNDVTMATHFIDLKKISNEQDGDKGFLPTFGPAWINLYGSPRNHSLMDDYQELNEGFGEGVSFRGRILVEIAVEILSGGAQESKFSKALKELKLSSKDKDSKSSKSASKEKGDKTDGGRPQQASDKTNSTEVEVEPFDVPPEIVPEKYEEFLLFGAFFEATMIDRRIGDKPISFEVSIGNFGNFIDGGSHHGSRKKSTDPAEEDSLPLLHEVEGDAAQEAPMPVVSTTHPEKPLVTEGNRNYSYLPFEAKKPCVYFVSSWGDQTFRLHWSNMLEKMADLLEEGLEEVKELIKLSEEAPEEKMKTVLSDFISQSSTFISEAEKKPKILNQTNLDKKRLTLCWQELEAVAKEAKELIQQQKKKFSLDEMIQETQNFVEKIRFLGDEPQHTIPDVFIWMLSNNKRVAYARIAAKDLLYSPIREQMGKHCGKIKTHFLKLPGKRPSGWSVQAKIDVYLWLGSTRYSSAILDNLPAGYEAETSSKGAGAHQLPANLLYQERHVFQLRAHMYQARGLIAADSNGLSDPFAKVTFLSHCQTTKVISQTLSPTWNQMLLFNDLVLHGDQKELAESPPSVVVELYDSDAVGKPEYLGATVAAPVVKLADQDYEPPRLCYHPIFCGNLSGGDLLAVFELLQVPASGLQGLPPLDPPDVTQIYPVPASIRPVLSKYRVEVLFWGVREMKKVQLLSVDRPQVLIECGGCGVKSCVIQSYKNNPNFSVQADAFEVELPENELLHPPLSICVVDWRAFGRSTLVGTYTINCLKQYLCKSREPLALASQVDGTQLGQVVSDSFMATEPSGLSSVQELPTDHVFVDVEPPPTVVPDSAQGQPSSLIDVPDSSPMLEPEHKPAAQEPPKDGKAKDARKPSRRSTKRRKRTIADESAENVIDWWSKYYASLKKAQKEKESNSKEKKGSAETKPDEVVVNIDSPKKKKDKMPKKKLKEDEIPNLAVLKIYDGDLESEFNNFEDWVKTFELLRGKSVEDDHGLDGDRVIGKFKGSFCIYKSPEASSMEDSGPLRVQQGIPANHPVPVLIRVYIVAAFNLSPADADGKSDPYIVIKLGKTEIKDRDKYIPKQLNPVFGRSFEIQATFPKESLLSVLIYDHDMIGTDDLIGETRIDLENRFYSKHRAICGLQSQYEIEGYNAWRDTSKPTEILTKLCKDNKLDGPYFRPGKIQIGNQVFSGKTVFTEEDTEETVESYEHLALRVLHSWEDIPEVGCRLVPEHIETRPLYHKDKPGMEQGRLQMWVDMFPKDMPQPGPPVDISPRKPKGYELRVIIWNTEDVILEDENIFTGQKSSDIYVKGWLKGLEDDKQETDVHYNSLTGEGNFNWRFLFPFQYLPAEKQMVITKRENIFSLEKMECKTPAVLVLQVWDFERLSSDDFLGSLEMNLNSFPRAAKSAKACDLTKFENASEENKISIFQQKRVRGWWPFSKSKELTGKVEAEFHLVTAEEAEKNPVGKARKEPEPLAKPNRPDTSFSWFMSPFKCLYHLIWKNYKKYIIIGFILIILVIFLVLFIYTLPGAISRRIVVGS", 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"length": 1858, "header": "tr|A0A287ARP5-1|A0A287ARP5_PIG Isoform 1 of Fer-1-like protein 6 OS=Sus scrofa OX=9823 GN=FER1L6 PE=3 SV=2 CANONICAL=A0A287ARP5-1" }, "locus": { "chromosome": "4", "start_pos": 15579326, "end_pos": 15436587, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037221.2", "url": "https://www.ensembl.org/id/ENSSSCT00000037221.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046758.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046758.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARP5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARP5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARP5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARP5" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARP5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARP5" } ], "pmid": "" }, { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARP5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARP5" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARP5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARP5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "plasma membrane organization", "id": "GO:0007009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007009", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARP5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARP5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARP5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARP5" } ], "pmid": "" }, { "name": "calcium-dependent phospholipid binding", "id": "GO:0005544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005544", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARP5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARP5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1042, "end_pos": 1044, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1368, "end_pos": 1370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1736, "end_pos": 1738, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" }, { "start_pos": 373, "end_pos": 375, "annotation": 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056534", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056534", "database": "InterPro", "categories": [ "Protein 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF25469", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003128959", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128959", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AS13", "url": "https://www.uniprot.org/uniprotkb/A0A287AS13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AS13-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVZ9", "url": "https://www.uniprot.org/uniprotkb/A0A287AVZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWPAGAGTKLPCPRDSALRRAAFSGNLTALPSHLMPAGRSVRVFISANPEDTGAERQALRENVYPKLREFCRENYGLEFQVIDLYWGIAEEEWDSPELHKTRMKLLEDCLKTSAGPCFVGLLGEKYGNIRIPGEVEASEFEMILDAAVEAKLETKLLEEWYCRDENSVPAAYYLRPKSEMLKSNKNAIQPAANSENEKPWQEISDEIKKIFKASVKLLHEKGKMKHSQAKRYLFSAIEDEFDFALGKQTPAFLKKCVCYIRKIANIERFVKIPEMGKYMDITGAEPRIIRDPEAQEKLIKLRDEFIPTIVASSNLRVYTSVTHCDMKLGYSQDIENHYIEGLGKQFYEDMIDIIQATVQQNFDTETDTLYDEILQHSSLCKTYASFYEYKCEALNRVHKYILPSKSGHINPLIVYGGPCTGKTLLLAEVAKKAYGWLHEDTGPESDPVIIVRFLGTTDMSTDLRTLLLSICEQLAVNYRCLVQSYPKKIHDLRDLFINLLNESSLQRPLVVILDALEQLSESDEARKLWWLPAHLPRFVRIVLSTLPSKHGILQKLRCLIHEEDNYIELIPRDRKMCSQVLKHQLLRVKRKVTSGQQIYVNNAFSKCTLPMFVNLTFREVKHWRSHRDVDESSLCVTVHESIEQLFWSLEKRCGQKLVSRALGYITMAKMGLSEMELEDVLALDNSVMSELHEGARPGNPLRVPYLYIARLKEGLSGYLIERHVKNVTLLVWANRHLQLIAQKLYLQDDRDLREMHTILADYFLGVWSGGRRKAFCLEDSYLNGCLDLESSSLLDEEKHFMEQASFDRQAPDQPWVFQCNPLEPDIFFVNHRKMCELLHHLTRCGKTDDLLYGVIMNFSWLYTMIKIGQFDRVLSDIELAYNYSQEKELKFLASTLRGIKTKIIAFPGSLSAELQQRLLPVVSSLPKLRHLLLECDKDGPKYCSIVPLHSSMDVTYSPERLPLSSSHLHVTEILPTCNPSTVLAALENGSISTWDVETRQLLRQITTAQSVILGMKLTSDEKYLVVATTNNTLLVYDNVNSCLLSEVEIKGTKHGSSSTYINGFTLSVKHALAWLEASKDVTVIDLLYGWPLYQFHCWYEVTCVQCSLDGVYAFCGQHLNTTTIFHLGSGEKLCTVTSEFSGGFVKFLLILDMAQEMVMVDSEGSLSVWNTEDISSPQLTDDFDCRREDSEVVSVELSEDQSAVLICKALSIELLDTGMWKVAEKFRAKHNERFISAVLSKNGDCIIATMENTSAVFFWRRETGQCMASLQEISGTIVKLVKSSHHNMLLSLSTSGVLSIWDIDIITAMSNIDKTGKPIQSLVLPARGEIIYSLDGSDCVHKWNFSSGFLEAVFKHEGTVEHCVLTSSGDIMVTSDDKSSQYVWHTSSGENLFRINGQRISQLLITHNDQFVVSLCEENASRVWRLATGHRVCNILTTLQNAFITSANTFVVGMTKSKVLAVSLWTGSITKKFCCEDGITIVNFKLIPDCPDIIVFITSAETVNIWSLTEEVICRRVQLPNNFLKNLEDFEISPNGKLGIISRGDENINVLDLHSGKLRVVHASGVIWRQRLSRDGRYLVYICFRNGEEEDENGAISSLIVMRLADGKNIGACSLYKTPTFLALSQRHLNIIVGFDDGSIGIYTVVDRVDAALKIKIATSNSRQIFNNATQTSRPKCNSYCFKMSVDCLWRESTEVFARDSPITVSDSMEPNEATPSKKHNACYDRVCPVLESRGHSYAPDN", "length": 1742, "header": "tr|A0A287AVZ9-1|A0A287AVZ9_PIG Isoform 1 of NACHT and WD repeat domain-containing protein 2 OS=Sus scrofa OX=9823 GN=NWD2 PE=4 SV=1 CANONICAL=A0A287AVZ9-1" }, "isoforms": [ { "isoform_ac": "A0A287AS13-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVZ9/entry#A0A287AS13-1", "sequence": { "sequence": "MWPAGAGTKLPCPRDSALRRAAFSGNLTALPSHLMPAGRSVRVFISANPEDTGAERQALRENVYPKLREFCRENYGLEFQVIDLYWGIAEEEWDSPELHKTRMKLLEDCLKTSAGPCFVEC", "length": 121, "header": "tr|A0A287AS13-1|A0A287AVZ9_PIG Computationally mapped isoform of NACHT and WD repeat domain-containing protein 2 OS=Sus scrofa OX=9823 GN=NWD2 PE=4 SV=1 CANONICAL=A0A287AVZ9-1" }, "locus": { "chromosome": "8", "start_pos": 28911017, "end_pos": 28802519, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057459.1", "url": "https://www.ensembl.org/id/ENSSSCT00000057459.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046704.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046704.1" } ] } }, { "isoform_ac": "A0A287AVZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVZ9/entry#A0A287AVZ9-1", "sequence": { "sequence": "MWPAGAGTKLPCPRDSALRRAAFSGNLTALPSHLMPAGRSVRVFISANPEDTGAERQALRENVYPKLREFCRENYGLEFQVIDLYWGIAEEEWDSPELHKTRMKLLEDCLKTSAGPCFVGLLGEKYGNIRIPGEVEASEFEMILDAAVEAKLETKLLEEWYCRDENSVPAAYYLRPKSEMLKSNKNAIQPAANSENEKPWQEISDEIKKIFKASVKLLHEKGKMKHSQAKRYLFSAIEDEFDFALGKQTPAFLKKCVCYIRKIANIERFVKIPEMGKYMDITGAEPRIIRDPEAQEKLIKLRDEFIPTIVASSNLRVYTSVTHCDMKLGYSQDIENHYIEGLGKQFYEDMIDIIQATVQQNFDTETDTLYDEILQHSSLCKTYASFYEYKCEALNRVHKYILPSKSGHINPLIVYGGPCTGKTLLLAEVAKKAYGWLHEDTGPESDPVIIVRFLGTTDMSTDLRTLLLSICEQLAVNYRCLVQSYPKKIHDLRDLFINLLNESSLQRPLVVILDALEQLSESDEARKLWWLPAHLPRFVRIVLSTLPSKHGILQKLRCLIHEEDNYIELIPRDRKMCSQVLKHQLLRVKRKVTSGQQIYVNNAFSKCTLPMFVNLTFREVKHWRSHRDVDESSLCVTVHESIEQLFWSLEKRCGQKLVSRALGYITMAKMGLSEMELEDVLALDNSVMSELHEGARPGNPLRVPYLYIARLKEGLSGYLIERHVKNVTLLVWANRHLQLIAQKLYLQDDRDLREMHTILADYFLGVWSGGRRKAFCLEDSYLNGCLDLESSSLLDEEKHFMEQASFDRQAPDQPWVFQCNPLEPDIFFVNHRKMCELLHHLTRCGKTDDLLYGVIMNFSWLYTMIKIGQFDRVLSDIELAYNYSQEKELKFLASTLRGIKTKIIAFPGSLSAELQQRLLPVVSSLPKLRHLLLECDKDGPKYCSIVPLHSSMDVTYSPERLPLSSSHLHVTEILPTCNPSTVLAALENGSISTWDVETRQLLRQITTAQSVILGMKLTSDEKYLVVATTNNTLLVYDNVNSCLLSEVEIKGTKHGSSSTYINGFTLSVKHALAWLEASKDVTVIDLLYGWPLYQFHCWYEVTCVQCSLDGVYAFCGQHLNTTTIFHLGSGEKLCTVTSEFSGGFVKFLLILDMAQEMVMVDSEGSLSVWNTEDISSPQLTDDFDCRREDSEVVSVELSEDQSAVLICKALSIELLDTGMWKVAEKFRAKHNERFISAVLSKNGDCIIATMENTSAVFFWRRETGQCMASLQEISGTIVKLVKSSHHNMLLSLSTSGVLSIWDIDIITAMSNIDKTGKPIQSLVLPARGEIIYSLDGSDCVHKWNFSSGFLEAVFKHEGTVEHCVLTSSGDIMVTSDDKSSQYVWHTSSGENLFRINGQRISQLLITHNDQFVVSLCEENASRVWRLATGHRVCNILTTLQNAFITSANTFVVGMTKSKVLAVSLWTGSITKKFCCEDGITIVNFKLIPDCPDIIVFITSAETVNIWSLTEEVICRRVQLPNNFLKNLEDFEISPNGKLGIISRGDENINVLDLHSGKLRVVHASGVIWRQRLSRDGRYLVYICFRNGEEEDENGAISSLIVMRLADGKNIGACSLYKTPTFLALSQRHLNIIVGFDDGSIGIYTVVDRVDAALKIKIATSNSRQIFNNATQTSRPKCNSYCFKMSVDCLWRESTEVFARDSPITVSDSMEPNEATPSKKHNACYDRVCPVLESRGHSYAPDN", "length": 1742, "header": "tr|A0A287AVZ9-1|A0A287AVZ9_PIG Isoform 1 of NACHT and WD repeat domain-containing protein 2 OS=Sus scrofa OX=9823 GN=NWD2 PE=4 SV=1 CANONICAL=A0A287AVZ9-1" }, "locus": { "chromosome": "8", "start_pos": 29006888, "end_pos": 28802519, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054199.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054199.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048301.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048301.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1715, "start_aa": "Thr", "end_pos": 1715, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1715", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS13", "url": "https://www.uniprot.org/uniprotkb/A0A287AS13" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522449", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522449", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVZ9", "url": "https://www.uniprot.org/uniprotkb/A0A287AVZ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1030, "end_pos": 1032, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1120, "end_pos": 1122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1252, "end_pos": 1254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1344, "end_pos": 1346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1419, "end_pos": 1421, 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9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AS76", "url": "https://www.uniprot.org/uniprotkb/A0A287AS76" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287AS76", "locus": {} } ], "crossref": [ { "id": "A0A287AS76", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AS76", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039758", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039758", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05251", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05251", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR008030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR42748", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42748", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42748:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42748:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05368", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05368", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AS76", "url": "https://www.uniprot.org/uniprotkb/A0A287AS76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AS76-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGQ9", "url": "https://www.uniprot.org/uniprotkb/A0A287BGQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "ELWYRLQMQFGSGAQGGSVARAILESKKFKVRALIRDETRPNVQMLRELGAEWVKGDLNDKASVEAVLKGAYGSFMVTNFWDDFSKEKEVFQGKLVADTAKSLGLKHVVYSGLENVWRLTGGKLEVPHFDGKGEVEEYFWSIGVPMTSVRIAAYFENFLGPWKPVKASDGDYYTLALPMGDVPMYGISVADVGVAVCSIFNSPEEFIGKAVGLSAEALTIQQYADILSKSMGKEITPEAYEKLGVPAVKEVANMCRFYQMKPDRDIELTRRLNPKVKSFSQFVSENQAALKVN", "length": 293, "header": "tr|A0A287AS76-1|A0A287AS76_PIG Isoform 1 of NmrA-like family domain-containing protein 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287AS76-1" }, "isoforms": [ { "isoform_ac": "A0A287AS76-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS76/entry#A0A287AS76-1", "sequence": { "sequence": "ELWYRLQMQFGSGAQGGSVARAILESKKFKVRALIRDETRPNVQMLRELGAEWVKGDLNDKASVEAVLKGAYGSFMVTNFWDDFSKEKEVFQGKLVADTAKSLGLKHVVYSGLENVWRLTGGKLEVPHFDGKGEVEEYFWSIGVPMTSVRIAAYFENFLGPWKPVKASDGDYYTLALPMGDVPMYGISVADVGVAVCSIFNSPEEFIGKAVGLSAEALTIQQYADILSKSMGKEITPEAYEKLGVPAVKEVANMCRFYQMKPDRDIELTRRLNPKVKSFSQFVSENQAALKVN", "length": 293, "header": "tr|A0A287AS76-1|A0A287AS76_PIG Isoform 1 of NmrA-like family domain-containing protein 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287AS76-1" }, "locus": { "chromosome": "13", "start_pos": 123815606, "end_pos": 123806491, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047901.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047901.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046816.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046816.2" } ] } }, { "isoform_ac": "A0A287BGQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS76/entry#A0A287BGQ9-1", "sequence": { "sequence": "HHKKKFLQGGSVARAILESKKFKVRALIRDETRPNVQMLRELGAEWVKGDLNDKASVEAVLKGAYGSFMVTNFWDDFSKEKEVFQGKLVADTAKSLGLKHVVYSGLENVWRLTGGKLEVPHFDGKGEVEEYFWSIGVPMTSVRIAAYFENFLGPWKPVKASDGDYYTLALPMGDVPMYGISVADVGVAVCSIFNSPEEFIGKAVGLSAEALTIQQYADILSKSMGKEITPEAYEKLGVPAVKEVANMCRFYQMKPDRDIELTRRLNPKVKSFSQFVSENQAALKVN", "length": 286, "header": "tr|A0A287BGQ9-1|A0A287BGQ9_PIG Computationally mapped isoform of NmrA-like family domain-containing protein 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287AS76-1" }, "locus": { "chromosome": "13", "start_pos": 123815606, "end_pos": 123806282, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046185.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046185.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055240.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055240.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS76", "url": "https://www.uniprot.org/uniprotkb/A0A287AS76" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS76", "url": "https://www.uniprot.org/uniprotkb/A0A287AS76" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AS76-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 293, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AS76-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AS76" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AS76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AS76" }, { "id": "PF05368", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05368" } ], "ann_type": "Domain_Extent_Annotation", 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AS86-1", "uniprot_ac": "A0A287AS86", "uniprot_id": "A0A287AS86_PIG", "mass": { "chemical_mass": 82639.0, "monoisotopic_mass": 82639.0 }, "refseq": {}, "gene_names": [ { "name": "MTMR12", "type": "recommended", "evidence": [ { "id": "A0A287AS86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AS86" } ] } ], "protein_names": [ { "name": 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"Protein Classification" ] }, { "id": "IPR022587", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022587", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030564", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030564", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030576", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030576", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10807", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10807", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10807:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10807:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06602", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06602", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12578", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12578", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1660516", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660516", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AS86", "url": "https://www.uniprot.org/uniprotkb/A0A287AS86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AS86-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS86-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDE1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDE2", 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"id": "ENSSSCT00000075524.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075524.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061631.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061631.2" } ] } }, { "isoform_ac": "A0A5G2RDE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS86/entry#A0A5G2RDE2-1", "sequence": { "sequence": "MLGKGVVGGGGGTKAPKPSFVSYVRPEEIHTNEKEVTEKEVTLHLLPGEQLLCEASTVLKCVQEDSCQRGIYGRLVCTDFKISFLGDDESALDNDETQFKNKVVGENDITLHCVDQIYGVFDEKKKTLFGQLKKYPETLIIHCKDLRVFHFCLRYTKEEEVKRTDRKNHAVMFDTLQDWCWELERTKGNMKYKAVSVNEGYKVCERLPAYFVVPTPLPEEDVPRFQGHGIPIWCWSCHNGCALLKMSALPKEQDDGILQIQKNFLDGIYKIIHRPPYEIVKTEDLSSNFLSLQEIQTAYSKFKQLFLIDNSTEFWDTDIKWFSLLESSSWLDIIRRCLKKAIEIIECLEAQNMNILLLEENASDLCCLVSSLVQVMMDPHCRTRFGFQSLVQKEWIMGGHCFLDRCNHLRQSDKEEHQRQLSLPLTQSKSSPKRGFFREETDHLIKNLLGKRISKLINSSEELQDNFREFYDSWHSKPPSYHGLLLPHIEGPEVKVWAQRYLRWIPEAQILGGGRVATMSKLLEMLEEVQSLQEKIEERHHSQEALQAEATSLLRNSARLSSLFPFALLQRHSSKPVLPTSGWKALEDEEDLAKREDEFVDLGDV", "length": 605, "header": "tr|A0A5G2RDE2-1|A0A287AS86_PIG Computationally mapped isoform of Myotubularin-related protein 12 OS=Sus scrofa OX=9823 GN=MTMR12 PE=3 SV=2 CANONICAL=A0A287AS86-1" }, "locus": { "chromosome": "16", "start_pos": 18537757, "end_pos": 18463453, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067999.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067999.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068724.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068724.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 690, "start_aa": "Thr", "end_pos": 690, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr690", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDE1" } ], "reference": [ { "type": "PubMed", "id": 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"MFKFHQVKHIFEILDKMRCLRKRFTVSFLGVLVIFLLFMNLYIEDSYVLEGDKQLVRETSIHQLNPERYVHTFKYLSNFSGTINVTYRYLAVMPFQRKRFLTIGLSSVRRKKGNYLLETIKSIFEQSSYEELKEISVVVHLADFNSSWREVMVQDITQKFAHHIIAGRLMVIHAPEEYYPLNGLKRNYNDPEDRVRFRSKQNVDYAFLLNFCANISDYYVMLEDDVRCSKNFLTAIKKVITSLQGTYWVTLEFSKLGYIGKLYHSHDLPRLAHFLLMFYQEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYKGTENKLKDDDFEEELIDLPDNPPASLYTNMSVFENYDASKAYSSVDGYFWGKPPSTGDVFVVVFENPVIIKKIKVSTGTEDRQNDILHHGALDVGGYIRYFKQNRQCITYIRLGEFKNGNFEVSDVNQKIPFDVHCMRIHVTKTQKEWLIIRSISIWTS", "length": 477, "header": "tr|A0A287AS89-1|A0A287AS89_PIG Isoform 1 of MGAT4 family member C OS=Sus scrofa OX=9823 GN=MGAT4C PE=4 SV=1 CANONICAL=A0A287AS89-1" }, "locus": { "chromosome": "5", "start_pos": 96191372, "end_pos": 96180970, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052040.2", "url": "https://www.ensembl.org/id/ENSSSCT00000052040.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046930.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046930.1" } ] } }, { "isoform_ac": "A0A5G2QHY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS89/entry#A0A5G2QHY3-1", "sequence": { "sequence": "MFKFHQVKHIFEILDKMRCLRKRFTVSFLGVLVIFLLFMNLYIEDSYVLEGDKQLVRETSIHQLNPERYVHTFKYLSNFSGTINVTYRYLAVMPFQRKTHGLLFIIRNRE", "length": 110, "header": "tr|A0A5G2QHY3-1|A0A287AS89_PIG Computationally mapped isoform of MGAT4 family member C OS=Sus scrofa OX=9823 GN=MGAT4C PE=4 SV=1 CANONICAL=A0A287AS89-1" }, "locus": { "chromosome": "5", "start_pos": 96190906, "end_pos": 96180970, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080335.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080335.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064399.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064399.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHY3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-975577", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975577", "resource": "Reactome", "description": "N-Glycan antennae elongation" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZEV3-1", "protein_name": "MGAT4 family, member C", "gene_name": "Mgat4c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFKFYQMKYIFQILDKMRCLRKRSTVSFLGVLVVFLLFMNVFIEDSYVLEGDKQLIRETSTHQLNSERYVHTFKDLSNFSGTINVTYRYLAATPLQRKRYLTIGLSSVKRKKGNYLLETIKSIFEQSSYEELKEISVVVHLADFNSSWRDAMVQDITQKFAHHIIAGRLMVIHAPEEYYPVLDGLKRNYNDPEDRVRFRSKQNVDYAFLLNFCANTSDYYVMLEDDVRCSRNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHSHDLPRLAHFLLMFYQEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYKGTENKLKDDDFEEESFDIPDNPPASLYTNMNVFENYEASKAYSSVDEYFWGKPPSTGDTFVIVFENPIKIKKIKVNTGTEDRQNDILHHGALDVGEKLIFSKQIRQCETYLRLGEFKNGNFEMSDVNQKIPFDIHCMRICVTKTQKEWLIIRSISIWTS", "length": 478 }, "evidence": [ { "id": "A0A287AS89", "url": "https://omabrowser.org/oma/group/A0A287AS89/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BNB2-1", "protein_name": "MGAT4 family member C", "gene_name": "MGAT4C", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLKFHQVKHIFDILDKMRCLRKRSTVSFLGVLVIFLLFMNLYIEDSYVMEGDKQILRETSTHQLSPEHYMHTFKDLSNFSGALNVTYRYLAVMPLQRKRFLTIGLSSVRRKKGSYLLETIKSIFEQSSYEELKELSVVVHLADFNSSWREVMLQDITQKFAHHIIAGRLMVIHAPEEYYPILSGLKRNYNDPEDRVRFRSKQNVDYAFLLNFCANISYYYVMLEDDVRCSKNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHSHDLPRLAHFLLMFYQEMPCDWLLTHFRSLLAQKNVIRFKPSLFQHMGYYSSYKGTENKLKDDDFEEEPFDLPDNPPASLYTNMSVFENYDASKAYSSVDDYFWGKPPSTGDVFVIIFEKPIVIKRIKVNTGTEDRQNDILHHGALDVGGNIRYFKQNRQCVTYIKLGEFRNGNFEVSDVNQKIPFDIHCMRIYVTKTQKEWLIIRSISIWTS", "length": 478 }, "evidence": [ { "id": "A0A287AS89", "url": "https://omabrowser.org/oma/group/A0A287AS89/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9D306-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C", "gene_name": "Mgat4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLKFYQMKYIFQILDKMRCLRKRSTVSFLGVLVVFLLFMNLYIEDSYVLEGDKQLIRETSTHQLNSERYVHTFKDLSNFSGTINVTYRYLAATPLQRKRYLTIGLSSVKRKKGNYLLDTIKSIFEQSSYEELKEISVVVHLADFNSSWRDAMVQDITQKFAHHIIAGRLMVIHAPEEYYPVLDGLKRNYNDPEDRVRFRSKQNVDYAFLLNFCANTSDYYVMLEDDVRCSRNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHSHDLPRLAHFLLMFYQEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYKGTENKLKDDDFEEESFDIPDNPPASFYTNMNVFENYEASKAYSSVDEYFWGKSPSMGDTFVIVFENPITIKKIKVNTGTEDRQNDILQHGALDVGEKLIFSKQIRQCDTYLRLGEFKNGYFEMSDVNQKIPFDIHCMRICVTKTQKEWLIIRSISIWTS", "length": 478 }, "evidence": [ { "id": "A0A287AS89", "url": "https://omabrowser.org/oma/group/A0A287AS89/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UBM8-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C", "gene_name": "MGAT4C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFKFHQMKHIFEILDKMRCLRKRSTVSFLGVLVIFLLFMNLYIEDSYVLEGDKQLIRETSTHQLNSERYVHTFKDLSNFSGAINVTYRYLAATPLQRKRYLTIGLSSVKRKKGNYLLETIKSIFEQSSYEELKEISVVVHLADFNSSWRDAMVQDITQKFAHHIIAGRLMVIHAPEEYYPILDGLKRNYNDPEDRVKFRSKQNVDYAFLLNFCANTSDYYVMLEDDVRCSKNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHSHDLPRLAHFLLMFYQEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYKGTENKLKDDDFEEESFDIPDNPPASLYTNMNVFENYEASKAYSSVDEYFWGKPPSTGDVFVIVFENPIIIKKIKVNTGTEDRQNDILHHGALDVGENVMPSKQRRQCSTYLRLGEFKNGNFEMSGVNQKIPFDIHCMRIYVTKTQKEWLIIRSISIWTS", "length": 478 }, "evidence": [ { "id": "A0A287AS89", "url": "https://omabrowser.org/oma/group/A0A287AS89/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "R4GKF3-1", "protein_name": "MGAT4 family member C", "gene_name": "MGAT4C", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVTLPYAFLHMRHNLKYFDKMRCLRKRSAVSFLGVLVICLLFMNLYIEDGYVLEGDKQLIRETATHQLNPERYAHTYKDLSNFSGSINISYRYLAGTPLPRKRYLTIGLSSVKRKKGNYLLETIKSIFEQSSYEELKEITVVVQLADFDSGWCEGMVQDISQKFAHHIIAGRLIVIHVPEEFYPILDGLKRNYNDPEDRVKFRSKQNVDYAFLLNFCANLSDYYVMLEDDVRCSKNFLTTVKKVITSREGSYWVTLEFSKLGYIGKLYHSHDLPRLAHFLLMFYQEMPCDWLLIHFRGLLAQKEVIRFKPSLFQHMGYYSSYKGAENKLKDDDFEEESFDIPDNPPANLHTNMNVFENYEASKAYSSIDEYFWGKPPSTGDFYGIVFEKPIKISKIKVVTGTEDRQNDILRHGALEVGEKIVGSKIGRKCTTYLRLGEFKNGNFEMTDVEHKVLFDINCMRILVTKSQKEWLIIRSISIWTSQTSSQ", "length": 487 }, "evidence": [ { "id": "A0A287AS89", "url": "https://omabrowser.org/oma/group/A0A287AS89/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "acetylglucosaminyltransferase activity", "id": "GO:0008375", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008375", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS89", "url": "https://www.uniprot.org/uniprotkb/A0A287AS89" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein N-linked glycosylation", "id": "GO:0006487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006487", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS89", "url": "https://www.uniprot.org/uniprotkb/A0A287AS89" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 347, "end_pos": 349, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AS89-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 477, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AS89-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AS89" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AS89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AS89" }, { "id": "PF23524", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23524" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MGAT4 A/B/C C-terminal", "eco_id": "ECO_0000259", "start_pos": 342, "end_pos": 470, "start_aa": "Ala", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AS89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AS89" }, { "id": "PF04666", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04666" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MGAT4 conserved region", "eco_id": "ECO_0000259", "start_pos": 68, "end_pos": 329, "start_aa": "Arg", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 145, "end_pos": 147 }, { "start_pos": 214, "end_pos": 216 }, { "start_pos": 347, "end_pos": 349 }, { "start_pos": 78, "end_pos": 80 }, { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AS91-1", "uniprot_ac": "A0A287AS91", "uniprot_id": "A0A287AS91_PIG", "mass": { "chemical_mass": 91729.0, "monoisotopic_mass": 91729.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100738050", "type": "recommended", "evidence": [ { "id": "A0A287AS91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91" } ] } ], "protein_names": [ { "name": "C2H2-type domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287AS91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS91", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A287BCR4", "url": "https://www.uniprot.org/uniprotkb/A0A287BCR4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AS91", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100738050", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91", "locus": {} } ], "crossref": [ { "id": "A0A287AS91", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AS91", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023596", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023596", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100738050", "url": "https://www.ncbi.nlm.nih.gov/gene/100738050", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235:SF178", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235:SF178", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384:SF218", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384:SF218", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13894", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13894", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AS91", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AS91-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BCR4", "url": "https://www.uniprot.org/uniprotkb/A0A287BCR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BCR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BCR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDIRGRVPKPELPRMPLDILDLLCFHTNFKIFCSSSVKNAIGNIIGVCRVDNQLEQSQEIQNRQFWQAPLINNNALTIERGNVLGKMFNFSTGPVPSIKIPCDTNGMSLKYISELINEKNYLRKRSDDLSAYGKLFLHINHEKTHLGEEPYEFIQNGKYLRYNEHLIPYQKIQNIEQSFEYKECGEDFHEKTVFITYKQTHIGQRPCEHNECDKIFCNYSSLMVHKMAQRRENLNECSKYGKTFGKSSLLKHRVHLKVKYYKNVEKVDNFSRSNFPDIGERSFESRNLGELFRERSVLNVTKRACIQDEAYECNECGRVSCKKSKLTKHQRVHTGEKLYECKECGKCFSRKSLLTLHQRIHTGEKPYKCNECGKSFSRNSHLIIHQRTHTGEKPYECKECRKNFYHKSYLTVHQRIHTGEKPYECNQCGKTFISNSVLTVHQKTHTGEKPYGCNQCGKFFSRNSYLKIHQRTHTGEKPYDCKVCGKTFCHKSDVTKHQKTHIGGKPYKCNQCGKAFSRNSGLKVHQRTHTKEKPYECDECGKSFSEKSVLIVHQRIHTGEKPYKCNECGKTFYNKSDLTKHQRTHTGEKPYECKECGKFFSRNSYLTIHQRTHTGEKAFMCKKCENTFYHKSDYTIHKRTHRGEKSYHCDQCGKTCTCSSVLRSHQRTHTGEKPYECNECGKSFSEKSVLTVHQRIHTGEKPYKCNECGKPFYHKSDLTKHQRTHTGEKPYECSHCGKTFSCNSGLKVHQRRHIREKPYECSHCRKTSKKSVLTVHSKLHTGEKIL", "length": 786, "header": "tr|A0A287AS91-1|A0A287AS91_PIG Isoform 1 of C2H2-type domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100738050 PE=3 SV=2 CANONICAL=A0A287AS91-1" }, "isoforms": [ { "isoform_ac": "A0A287AS91-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91/entry#A0A287AS91-1", "sequence": { "sequence": "MDIRGRVPKPELPRMPLDILDLLCFHTNFKIFCSSSVKNAIGNIIGVCRVDNQLEQSQEIQNRQFWQAPLINNNALTIERGNVLGKMFNFSTGPVPSIKIPCDTNGMSLKYISELINEKNYLRKRSDDLSAYGKLFLHINHEKTHLGEEPYEFIQNGKYLRYNEHLIPYQKIQNIEQSFEYKECGEDFHEKTVFITYKQTHIGQRPCEHNECDKIFCNYSSLMVHKMAQRRENLNECSKYGKTFGKSSLLKHRVHLKVKYYKNVEKVDNFSRSNFPDIGERSFESRNLGELFRERSVLNVTKRACIQDEAYECNECGRVSCKKSKLTKHQRVHTGEKLYECKECGKCFSRKSLLTLHQRIHTGEKPYKCNECGKSFSRNSHLIIHQRTHTGEKPYECKECRKNFYHKSYLTVHQRIHTGEKPYECNQCGKTFISNSVLTVHQKTHTGEKPYGCNQCGKFFSRNSYLKIHQRTHTGEKPYDCKVCGKTFCHKSDVTKHQKTHIGGKPYKCNQCGKAFSRNSGLKVHQRTHTKEKPYECDECGKSFSEKSVLIVHQRIHTGEKPYKCNECGKTFYNKSDLTKHQRTHTGEKPYECKECGKFFSRNSYLTIHQRTHTGEKAFMCKKCENTFYHKSDYTIHKRTHRGEKSYHCDQCGKTCTCSSVLRSHQRTHTGEKPYECNECGKSFSEKSVLTVHQRIHTGEKPYKCNECGKPFYHKSDLTKHQRTHTGEKPYECSHCGKTFSCNSGLKVHQRRHIREKPYECSHCRKTSKKSVLTVHSKLHTGEKIL", "length": 786, "header": "tr|A0A287AS91-1|A0A287AS91_PIG Isoform 1 of C2H2-type domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100738050 PE=3 SV=2 CANONICAL=A0A287AS91-1" }, "locus": { "chromosome": "14", "start_pos": 61015724, "end_pos": 61000654, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046214.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046214.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046785.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046785.2" } ] } }, { "isoform_ac": "A0A287BCR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91/entry#A0A287BCR4-1", "sequence": { "sequence": "MLENYSHLISVGYCIPKPELIFRLEQGEQPWILEEESPSQSYPGVCRVDNQLEQSQEIQNRQFWQAPLINNNALTIERGNVLGKMFNFSTGPVPSIKIPCDTNGMSLKYISELINEKNYLRKRSDDLSAYGKLFLHINHEKTHLGEEPYEFIQNGKYLRYNEHLIPYQKIQNIEQSFEYKECGEDFHEKTVFITYKQTHIGQRPCEHNECDKIFCNYSSLMVHKMAQRRENLNECSKYGKTFGKSSLLKHRVHLKVKYYKNVEKVDNFSRSNFPDIGERSFESRNLGELFRERSVLNVTKRACIQDEAYECNECGRVSCKKSKLTKHQRVHTGEKLYECKECGKCFSRKSLLTLHQRIHTGEKPYKCNECGKSFSRNSHLIIHQRTHTGEKPYECKECRKNFYHKSYLTVHQRIHTGEKPYECNQCGKTFISNSVLTVHQKTHTGEKPYGCNQCGKFFSRNSYLKIHQRTHTGEKPYDCKVCGKTFCHKSDVTKHQKTHIGGKPYKCNQCGKAFSRNSGLKVHQRTHTKEKPYECDECGKSFSEKSVLIVHQRIHTGEKPYKCNECGKTFYNKSDLTKHQRTHTGEKPYECKECGKFFSRNSYLTIHQRTHTGEKAFMCKKCENTFYHKSDYTIHKRTHRGEKSYHCDQCGKTCTCSSVLRSHQRTHTGEKPYECNECGKSFSEKSVLTVHQRIHTGEKPYKCNECGKPFYHKSDLTKHQRTHTGEKPYECSHCGKTFSCNSGLKVHQRRHIREKPYECSHCRKTSKKSVLTVHSKLHTGEKIL", "length": 784, "header": "tr|A0A287BCR4-1|A0A287BCR4_PIG Computationally mapped isoform of Zinc finger protein 33B OS=Sus scrofa OX=9823 GN=LOC100738050 PE=3 SV=2 CANONICAL=A0A287AS91-1" }, "locus": { "chromosome": "14", "start_pos": 61016073, "end_pos": 61000654, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058609.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058609.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054119.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054119.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS91", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS91", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS91", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS91", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS91", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS91", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS91", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS91", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS91", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 269, "end_pos": 271, "annotation": "n_glycosylation_sequon" }, { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" }, { "start_pos": 574, "end_pos": 576, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AS91-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 786, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AS91-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AS91" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AS91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AS91" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 179, "end_pos": 206, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 218, "end_pos": 220 }, { "start_pos": 269, "end_pos": 271 }, { "start_pos": 299, "end_pos": 301 }, { "start_pos": 574, "end_pos": 576 }, { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AS92-1", "uniprot_ac": "A0A287AS92", "uniprot_id": "A0A287AS92_PIG", "mass": { "chemical_mass": 65284.0, "monoisotopic_mass": 65284.0 }, "refseq": {}, "gene_names": [ { "name": "BICDL1", "type": "recommended", "evidence": [ { "id": "A0A287AS92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AS92" } ] } ], "protein_names": [ { "name": "BICD family like cargo adaptor 1", "type": "synonym", "evidence": [ { "id": "A0A287AS92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AS92/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AS92", "url": "https://www.uniprot.org/uniprotkb/A0A287AS92" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BICDL1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS92", "locus": { "chromosome": "14", "start_pos": 40123628, "end_pos": 39914464, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009896", "url": "https://www.ensembl.org/id/ENSSSCG00000009896" } ] } } ], "crossref": [ { "id": "A0A287AS92", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AS92", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009896", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009896", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR051149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR32123", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32123", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32123:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32123:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27654", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27654", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28219", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28219", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AS92", "url": "https://www.uniprot.org/uniprotkb/A0A287AS92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AS92-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS92-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJK6", "url": "https://www.uniprot.org/uniprotkb/F1RJK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJK6-1", "url": "https://www.uniprot.org/uniprotkb/F1RJK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAFCLGLAGRTSAPAEPDSACCMELPAAAPDAVGSPAAAAALISFPGGPGDLELALEEELALLAAGERPSDPGEHPQAESGPPTEGAELQPPPAQDPELLSVIRQKEKDLVLAARLGKALLERNQDMSRQYEQMHKELTDKLEHLEQEKHELRRRFENREGEWEGRVSELESDVKQLQDELERQQVHLREADREKTRAVQELSEQNQRLLDQLSRASEVERKLSMQVHALREDFREKNSSTNQHIIRLESLQAEVSLPIKMLSDRKRELEHRLSATLEENDLLQGTVEELQDRVLILEKQGHDKDLQLHQSQMELQEVRLSYRQLQVKVEELTEERSLQSSAATSASLLSEIEQSMEAEELEQEREQLRLQLWEAYCQVRYLCSHLRGNDSADSAVSTDSSMDESSETSSAKDVPAGSLRTALSELKRLIQSIVDGMEPTVTLLSVEMTALKEERDRLRVTSEDKEPKEQLQKAIRDRDEAIAKKNAVEVELAKCKMDVMSLNSQLLDAIQQKLNLSQQLEAWQDDMHRVIDRQLMDTHLKEQSRPAAALSRAHGSGRTDEPSTAEGKRLFSFFRKI", "length": 578, "header": "tr|A0A287AS92-1|A0A287AS92_PIG Isoform 1 of BICD family like cargo adaptor 1 OS=Sus scrofa OX=9823 GN=BICDL1 PE=4 SV=2 CANONICAL=A0A287AS92-1" }, "isoforms": [ { "isoform_ac": "A0A287AS92-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS92/entry#A0A287AS92-1", "sequence": { "sequence": "MSAFCLGLAGRTSAPAEPDSACCMELPAAAPDAVGSPAAAAALISFPGGPGDLELALEEELALLAAGERPSDPGEHPQAESGPPTEGAELQPPPAQDPELLSVIRQKEKDLVLAARLGKALLERNQDMSRQYEQMHKELTDKLEHLEQEKHELRRRFENREGEWEGRVSELESDVKQLQDELERQQVHLREADREKTRAVQELSEQNQRLLDQLSRASEVERKLSMQVHALREDFREKNSSTNQHIIRLESLQAEVSLPIKMLSDRKRELEHRLSATLEENDLLQGTVEELQDRVLILEKQGHDKDLQLHQSQMELQEVRLSYRQLQVKVEELTEERSLQSSAATSASLLSEIEQSMEAEELEQEREQLRLQLWEAYCQVRYLCSHLRGNDSADSAVSTDSSMDESSETSSAKDVPAGSLRTALSELKRLIQSIVDGMEPTVTLLSVEMTALKEERDRLRVTSEDKEPKEQLQKAIRDRDEAIAKKNAVEVELAKCKMDVMSLNSQLLDAIQQKLNLSQQLEAWQDDMHRVIDRQLMDTHLKEQSRPAAALSRAHGSGRTDEPSTAEGKRLFSFFRKI", "length": 578, "header": "tr|A0A287AS92-1|A0A287AS92_PIG Isoform 1 of BICD family like cargo adaptor 1 OS=Sus scrofa OX=9823 GN=BICDL1 PE=4 SV=2 CANONICAL=A0A287AS92-1" }, "locus": { "chromosome": "14", "start_pos": 40122350, "end_pos": 40004565, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061580.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061580.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046951.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046951.2" } ] } }, { "isoform_ac": "F1RJK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS92/entry#F1RJK6-1", "sequence": { "sequence": "MSRQYEQMHKELTDKLEHLEQEKHELRRRFENREGEWEGRVSELESDVKQLQDELERQQVHLREADREKTRAVQELSEQNQRLLDQLSRASEVERKLSMQVHALREDFREKNSSTNQHIIRLESLQAEIKMLSDRKRELEHRLSATLEENDLLQGTVEELQDRVLILEKQGHDKDLQLHQSQMELQEVRLSYRQLQVKVEELTEERSLQSSAATSASLLSEIEQSMEAEELEQEREQLRLQLWEAYCQVRYLCSHLRGNDSADSAVSTDSSMDESSETSSAKDVPAGSLRTALSELKRLIQSIVDGMEPTVTLLSVEMTALKEERDRLRVTSEDKEPKEQLQKAIRDRDEAIAKKNAVEVELAKCKMDVMSLNSQLLDAIQQKLNLSQQLEAWQDDMHRVIDRQLMDTHLKEQSRPAAALSRAHGSGRTDEPSTAEGKRLFSFFRKI", "length": 447, "header": "tr|F1RJK6-1|A0A287AS92_PIG Computationally mapped isoform of BICD family like cargo adaptor 1 OS=Sus scrofa OX=9823 GN=BICDL1 PE=4 SV=3 CANONICAL=A0A287AS92-1" }, "locus": { "chromosome": "14", "start_pos": 40122350, "end_pos": 40004946, "strand": "-", "evidence": [ { "database": 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"MISRYARKPVPPGALQPQGLTQHAVRHHPLPEPSPITPTSESCPGASSESEISKESDYPSVTPTDDGNSWSASPSYAGTSTEDSSIFSWGYDEFDKAATQQVQNMFRQLDELLYEQKENVHVEGLQEECQQWTSNFPHLRVVGKQIVIPKDEGYEWYSSSPSASLGSSDVSPSQEEGSNEFSVFGKKVPLSVSPVLKKADRSKSPTSCSPDSEEGEDGVIVSEGIMEEYLAFDCRDVEEELHERKIRLSSSRRKLGFPPISPYSCMKDSVLAFVFDDVWSEVLGCMEELISRHWEVSASDDEKNIIKVEAIRADSGSPQQFDPPPVLLPRVPQTKMPSVTSNLCPKPRCGRKTKKRRKPPQVNQGSHSGSQRNLNGLIVIHGIHLQQRNLPVMEKTLDLDDKRPGSSSVLSNKAWPNRPPLELSTSPLSHSSKRRNPPPRTLHPIGTSQSRTATPRSVDDVFRGPRFLTAHEQLTSPSPLLLNRNSLLPPIGTTDVAEHASTAGSQRQTKSRGNSSRAHSVTTHEDTHQQLHERLFLPDHFSRPKTTNVFLPDPQHRRSCTVIDYGNHAWTSRASAGSGLQPHGSVKGQSRSGSVTKSKQGF", "length": 602 }, "evidence": [ { "id": "A0A287ASH1", "url": "https://omabrowser.org/oma/group/A0A287ASH1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7EWT5-1", "protein_name": "Protein FAM149B1 isoform X1", "gene_name": "Fam149b1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MISRYTRKAVPQCVELKGRTKHALNHHPLPEQLDDISSTNDSHEKDTSTQSESDITQESPFTSTDTGNSHSAFPSYAGTGISTEGSSDFSWGYGELDQNATEKVQAMFTAIDELLYEQKLSVHTQSLQRECQQWASSFPHLRILGRQMITPCEGYGLYPRSPSAVSASHDSTLSQERDSTIFGIRGKKLHFSSYAHKACLSIKPSGLSAVEGEEVDCIIFSEGIIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDNVWSKVVGCMEQLTRSHWEGFASDDESNIEIARMDSGSPCMLNEQHPLVLPRVPQSKVLSITSNPMSFCQASGHQPNVNGLLVHGMPLQPRNLSLMDKLLDIDDKLLMRPGSSSVLSNRNWPNRALELSTSSLSYTAQSARRRNPPPRTLHPISTSHSRAGTPWPAEEILRGSRGPVTADTLSSPSSMPLGRNNLLPPIGTAEVEHLSTLGPQRPSKSHGDSSRARSAVVDEPNQQPQERLLLPVFSRPNTTQSFLPDTQYRNSCASEFPHQARPGRGSAENPRFPAPMSGNSQPPVSPDPRDQTPSSCPHKYLHKCGTHSQVLSYMGLQNLKAEVDPSLEAGSDHGAGENPQGCSRLQIHGGFHAPALRHQMMQSSYKQQLGPSSRVISVQLSEIH", "length": 672 }, "evidence": [ { "id": "A0A287ASH1", "url": "https://omabrowser.org/oma/group/A0A287ASH1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0JNF3-1", "protein_name": "Primary cilium assembly protein FAM149B1", "gene_name": "FAM149B1", 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"MELDQNATEKVKAMFTAIDELLYEQKPSVHTQSLQKECQQWASSFPHLRILGRQIITSSEGYGLYPRSPSAVSASHEAILPQERESTIFGIRGKKLHFSSSYKASPSTKASGSSADGEEADCIIFSEGIIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDNVWSKAVGCMEQLTRSHWEGFASDDESNVEITRLDSGSPYMLNEQQPLVLPRVPQSKVMSVTSNPMNFCQASGHQPNVNGLLIHGMPLQPRNLSLMDKLLDLDDKLLMRPGSSSVLSNRNWPNRAMELSTSSLSYTTQSARRRNPPPRTLHPISTSHSRTGTPWPAEEILRGPRLPMTADSLSSPSPMTMGRNNLLPPIGTADVEHLSILGSQRPTKPHGDSSRARSAAVDEPNQQPQERLLLPVFSRPNTTQSFLPETQYRSSCASECPHHARPGRGSAGPQSHGSTKPQSRGGPISRTRQ", "length": 482 }, "evidence": [ { "id": "A0A287ASH1", "url": "https://omabrowser.org/oma/group/A0A287ASH1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6NSV7-1", "protein_name": "Primary cilium assembly protein FAM149B1", "gene_name": "Fam149b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MISRYTRKAVPQSVELKGLTKHALNHHPLPERLDDISSTNNSHGKDTSSHSESDITQESPITSTDTGNSNSRSAFPSYAGTGVSTEGSSDFSWGYGELDQNATEKVQAMFTAIDELLYEQQLSAHTQGLQKECQQWAASFPHLRILGRQIITPSEGYGLYPRSPSAVSASHEATLSQERESTIFGIRGKKLHFSSSYKPSPTIKASGLCAVGGEEADCIIFSEGVIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFHCMKEDVLAHVFDNVWSKAVGCMEQLTRSHWEGCASDDESNVEITRLDSGSPYVLNEQHPLVLPRVPQSKVPSITSSPMSFCQASGHQPNVSGLLIHGMPLQPRNLSLMDKLLDLDDKLLTRPGSSSVLSNRNWPNRAMELSTSSLSYTTQSARRRNPPPRTLHPISTSHSRAGTPWPVEEILRGPRVPVTADTLSSPSPMTLGRNNLLPPIGTVEVEHLSAMGPQRPTKSHGDSSRARSAVVDEPNQQPQERLLLPVFSRPNTTQSFLPDTQYRSSCASEYPHQARPGRGSAGPQSHGSTKPQSRGGPISRTRQ", "length": 578 }, "evidence": [ { "id": "A0A287ASH1", "url": "https://omabrowser.org/oma/group/A0A287ASH1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96BN6-1", "protein_name": "Primary cilium assembly protein FAM149B1", "gene_name": "FAM149B1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MISRYTRKAVPQSLELKGITKHALNHHPPPEKLEEISPTSDSHEKDTSSQSKSDITRESSFTSADTGNSLSAFPSYTGAGISTEGSSDFSWGYGELDQNATEKVQTMFTAIDELLYEQKLSVHTKSLQEECQQWTASFPHLRILGRQIITPSEGYRLYPRSPSAVSASYETTLSQERDSTIFGIRGKKLHFSSSYAHKASSIAKSSSFCSMERDEEDSIIVSEGIIEEYLAFDHIDIEEGFHGKKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDSVWCKVVSCMEQLTRSHWEGFASDDESNVAVTRPDSESSCVLSELHPLVLPRVPQSKVLYITSNPMSLCQASRHQPNVNDLLVHGMPLQPRNLSLMDKLLDLDDKLLMRPGSSTILSTRNWPNRAVEFSTSSLSYTVQSTRRRNPPPRTLHPISTSHSCAETPRSVEEILRGARVPVAPDSLSSPSPTPLSRNNLLPPIGTAEVEHVSTVGPQRQMKPHGDSSRAQSAVVDEPNYQQPQERLLLPDFFPRPNTTQSFLLDTQYRRSCAVEYPHQARPGRGSAGPQLHGSTKSQSGGRPVSRTRQGP", "length": 582 }, "evidence": [ { "id": "A0A287ASH1", "url": "https://omabrowser.org/oma/group/A0A287ASH1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": 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"type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ASH1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ASH1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ASH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ASH1" }, { "id": "PF12516", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12516" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF3719", "eco_id": "ECO_0000259", "start_pos": 114, "end_pos": 179, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 369, "end_pos": 371 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 529, "end_pos": 531 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ASH7-1", "uniprot_ac": "A0A287ASH7", "uniprot_id": "A0A287ASH7_PIG", "mass": { "chemical_mass": 16748.0, "monoisotopic_mass": 16748.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "DSBA-like thioredoxin domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287ASH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ASH7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ASH7", "url": "https://www.uniprot.org/uniprotkb/A0A287ASH7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287ASH7", "locus": {} } ], "crossref": [ { "id": "A0A287ASH7", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ASH7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023072", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023072", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051924", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051924", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR42943", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42943", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42943:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42943:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01323", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01323", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ASH7", "url": "https://www.uniprot.org/uniprotkb/A0A287ASH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ASH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "FCVPPGDIESTDEIMSPKHLKGGRNSALSLSAGIMKDSRNQLPAMLPRKALYLKGDIKLLGLHLQVSLHFPRDFFSVTLEKGSLTAMHFLLSVKLEHPAMLEKVSGEQRMHIWSRDEDITEPQSILSTAEKAGMSTGQAQDFWKGSQHHR", "length": 150, "header": "tr|A0A287ASH7-1|A0A287ASH7_PIG Isoform 1 of DSBA-like thioredoxin domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287ASH7-1" }, "isoforms": [ { "isoform_ac": "A0A287ASH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASH7/entry#A0A287ASH7-1", "sequence": { "sequence": "FCVPPGDIESTDEIMSPKHLKGGRNSALSLSAGIMKDSRNQLPAMLPRKALYLKGDIKLLGLHLQVSLHFPRDFFSVTLEKGSLTAMHFLLSVKLEHPAMLEKVSGEQRMHIWSRDEDITEPQSILSTAEKAGMSTGQAQDFWKGSQHHR", "length": 150, "header": "tr|A0A287ASH7-1|A0A287ASH7_PIG Isoform 1 of DSBA-like thioredoxin domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287ASH7-1" }, "locus": { "chromosome": "9", "start_pos": 121125268, "end_pos": 121124211, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041988.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041988.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047030.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047030.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ASH7", "url": "https://www.uniprot.org/uniprotkb/A0A287ASH7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "glutathione 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3 OS=Sus scrofa OX=9823 GN=NIBAN3 PE=3 SV=2 CANONICAL=A0A287ASJ7-1" }, "locus": { "chromosome": "2", "start_pos": 60185603, "end_pos": 60164315, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053068.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053068.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048129.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048129.2" } ] } }, { "isoform_ac": "F1S941-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASJ7/entry#F1S941-1", "sequence": { "sequence": "MGGRPSSPLDKRQQKQLRGQVDTLLRNFLPCYRGQLAASVLWQISQELGPQEPAGCQLLHSKKLPRVREHRGPLTLLQGHPPQWQPIFCVLRGDGRLEWFSHREEYENGDHPLESTPLTGYTVLTSQSEYLRLLDALCPDSSGDHTQEEPDLLLETPVQFPLFLQHPFRRHLCLSAATGKMQQAWSLALQGGIRLRGTVLRRSQAPAARAFLDAIRLYRQQRGHFGDDDATLGSDAEVLTAVLMRQLLPELRSQTLPGLRESGRARAWSWTKLLDAVHAAVLAGASAGLRAFQPEKDELLVALERTIRPDVEQMLQLQARVAGRLQAEVQGPLESCLHRKVDMQLPRVTQTLLSTLEAELTVVQTLLTQGMDRLSRHLRRSSSGARLRKEVYSFGEMPWDPELMQTCYHEAEQSRGRLGQLTAPFGFFGTQSLVFGAQDLAQQLMADAVATFLQLADQYLTTALDCDQAAQQLEKVGGRVLKELPEFEGVLAMGSPALTIEGIYEDVVRGVLLQRINQELKKALGASNVSCTLDDCSEAPWDQAGADVVTEAQRGTCSKQPGSGTKVQPLCPLPPPGTFQS", "length": 581, "header": "tr|F1S941-1|A0A287ASJ7_PIG Computationally mapped isoform of Niban apoptosis regulator 3 OS=Sus scrofa OX=9823 GN=NIBAN3 PE=3 SV=4 CANONICAL=A0A287ASJ7-1" }, "locus": { "chromosome": "2", "start_pos": 60185603, "end_pos": 60164315, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015168.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015168.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014762.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014762.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S941", "url": "https://www.uniprot.org/uniprotkb/F1S941" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 563, "end_pos": 565, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ASJ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 616, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287ASJ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287ASJ7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ASJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ASJ7" }, { "id": "SM00233", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00233" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 68, "end_pos": 196, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 563, "end_pos": 565 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ASK2-1", "uniprot_ac": "A0A287ASK2", "uniprot_id": "A0A287ASK2_PIG", "mass": { "chemical_mass": 81856.0, "monoisotopic_mass": 81856.0 }, "refseq": { "ac": "XP_003121199", "name": "F-box only protein 30", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121199" }, "gene_names": [ { "name": "FBXO30", "type": "recommended", "evidence": [ { "id": "A0A287ASK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ASK2" } ] }, { "name": "FBXO30", "type": "synonym", "evidence": [ { "id": "XP_003121199", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121199" } ] } ], "protein_names": [ { "name": "F-box only protein 30", "type": "recommended", "evidence": [ { "id": "A0A287ASK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ASK2/entry#names_and_taxonomy" } ] }, { "name": "F-box only protein 30", "type": "synonym", "evidence": [ { "id": "XP_003121199", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121199" } ] } ], "function": [ { "annotation": "Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Required for muscle atrophy following denervation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ASK2", "url": "https://www.uniprot.org/uniprotkb/A0A287ASK2#function" }, { "database": "UniProtKB", "id": "ARBA00057742", "url": "https://www.uniprot.org/uniprotkb/ARBA00057742#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ASK2", "url": "https://www.uniprot.org/uniprotkb/A0A287ASK2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBXO30", "url": "https://www.uniprot.org/uniprotkb/A0A287ASK2", "locus": { "chromosome": "1", "start_pos": 19777618, "end_pos": 19764591, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004121", "url": "https://www.ensembl.org/id/ENSSSCG00000004121" } ] } } ], "crossref": [ { "id": "A0A287ASK2", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ASK2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004121", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004121", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22174", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22174", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519988", "url": "https://www.ncbi.nlm.nih.gov/gene/100519988", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031890", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031890", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043013", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043013", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519988", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519988", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SSWQVKE", "url": "https://omabrowser.org/oma/group/SSWQVKE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287ASK2", "url": "https://www.orthodb.org/?gene=A0A287ASK2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15933", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15933", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15933:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15933:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15965", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15965", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15966", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15966", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003121199", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121199", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ASK2", "url": "https://www.uniprot.org/uniprotkb/A0A287ASK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ASK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEELQHSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEACPASVVCCTMEWNRWPVSYADRKSYENLSRDVDEVAQLDMALALQDQRMLLESLKVATMMSKATDKVSEPREQISVKSSVSEIPHTNGLVSVDEESYGALYQATVETTRSLAAALDILNTATRDIGMLSSSLCTSPNEINEEQNSRESLKDQDHLYADEIGAVGGIDHNDTSQNAQSEQNGSSDLLCDLDASSYGSSALCNGFPLEDICTQVIEQNQNLHGDSKQNNLTNGECVASDGISEPSSSLSVAAQLREVIPANALPNGTVQHILMPDDDEGDLCWRKVDLGDLRNMDVLSFNHPPSFKFLSNSCWSKPKEDKAVDTSDLEVAEDPMGLQGIDLITAALLFCLGDSPGGRGISDSRMVDVYHIDFGTQTFSLPSAILATNTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQRSMFTFVCGQLFRRKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSTQGAKIIHDRHLRSFGVQPSVSTVLVEPARNCVLGLHNDHLSSLPFEVLQHIAGFLDGFSLCQLSCVSKLMRDVCGSLLQSRGMVILQWGKRKYPEGNSSWQIKEKVWRFSTAFCSVNEWKFADILSMADHLKKCSYNIVEKREEAVPLPCMCVTRELTKEGRSLRSVLKPVL", "length": 741, "header": "tr|A0A287ASK2-1|A0A287ASK2_PIG Isoform 1 of F-box only protein 30 OS=Sus scrofa OX=9823 GN=FBXO30 PE=4 SV=1 CANONICAL=A0A287ASK2-1" }, "isoforms": [ { "isoform_ac": "A0A287ASK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASK2/entry#A0A287ASK2-1", "sequence": { "sequence": "MEEELQHSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEACPASVVCCTMEWNRWPVSYADRKSYENLSRDVDEVAQLDMALALQDQRMLLESLKVATMMSKATDKVSEPREQISVKSSVSEIPHTNGLVSVDEESYGALYQATVETTRSLAAALDILNTATRDIGMLSSSLCTSPNEINEEQNSRESLKDQDHLYADEIGAVGGIDHNDTSQNAQSEQNGSSDLLCDLDASSYGSSALCNGFPLEDICTQVIEQNQNLHGDSKQNNLTNGECVASDGISEPSSSLSVAAQLREVIPANALPNGTVQHILMPDDDEGDLCWRKVDLGDLRNMDVLSFNHPPSFKFLSNSCWSKPKEDKAVDTSDLEVAEDPMGLQGIDLITAALLFCLGDSPGGRGISDSRMVDVYHIDFGTQTFSLPSAILATNTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQRSMFTFVCGQLFRRKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSTQGAKIIHDRHLRSFGVQPSVSTVLVEPARNCVLGLHNDHLSSLPFEVLQHIAGFLDGFSLCQLSCVSKLMRDVCGSLLQSRGMVILQWGKRKYPEGNSSWQIKEKVWRFSTAFCSVNEWKFADILSMADHLKKCSYNIVEKREEAVPLPCMCVTRELTKEGRSLRSVLKPVL", "length": 741, "header": "tr|A0A287ASK2-1|A0A287ASK2_PIG Isoform 1 of F-box only protein 30 OS=Sus scrofa OX=9823 GN=FBXO30 PE=4 SV=1 CANONICAL=A0A287ASK2-1" }, "locus": { "chromosome": "1", "start_pos": 19770717, "end_pos": 19764607, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041085.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041085.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046839.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046839.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ASK2", "url": "https://www.uniprot.org/uniprotkb/A0A287ASK2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519988", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519988", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XGI2-1", "protein_name": "F-box only protein 30", "gene_name": "FBXO30", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEEHQQHLHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFHSCKAEEHRILCPLERVPCLNSGFGCPFVVARNKIADHLEVCPASVVCCTMEWNRWPVSYADRKSYENLSKDVDEVEQLDMALALQDQRMLLESLKVATMMSKAADQMSESREQTSVKTNAPDTVCSNGLIPVDEESYGALYQATVETTRSLAAALDILNTATRDISMLNSRLCASPQEMKEDTEIKEQASNGIIQDSKSDREYPDEENTGAVGGITFDSLHQNSQMEQNGSSDICYDAIQNRDLNLNLTNSSLLCNGFHVENECSKVLDQNEDLGVSNSKSFSVANGECTASHDDEALQSCSSFPVTSQLKEVIPSDHLVNGNVNHMLLPHNANEEEILERQVEQERLRNVDVFSIMRHRSYKFLWSAPKEDKAVDTSDLEITEDPMGLQGIDLITAALLFCLGDSPGGRGISESRTVDVYRVDFGTQTFSLPSAILATNTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLEYVARYQTKQRSMFTFVCGQLFRRNEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSTQGAKIIHDRHLRSFGVQPSISTVLVEPAKSCLIGLHNDHLSSLPFEVLQHIANFLDGFSLCQLSRVSRLMRDVCGSLLQARGMVILLWEKRKYPDGSSSWQIKEKVWRFSTAFCTVNEWKFADIVSMADHLKKCSYNAVERREEAVPLPCMCVTRELTKEGRSLRSVLKPVL", "length": 756 }, "evidence": [ { "id": "A0A287ASK2", "url": "https://omabrowser.org/oma/group/A0A287ASK2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BAY5-1", "protein_name": "F-box only protein 30", "gene_name": "FBXO30", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEEELQHSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFHACKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLETCPASVVCCTMEWNRWPVSYADRKSYENLSRDVDEVAQLDMALALQDQRMLLESLKVATMMSKATDKVSEPREQISVKPSVSEIPHTNGLVSVDEESYGALYQATVETTRSLAAALDILNTATRDIGMLSTSLCASLNEMNEEQKAREGLQNRNQKDQDHLYEDEMGAVGGIDHKDTSQNAQLEQNGSSDLLCDFNASSYGTSALCNGFPLEDICAQVIEQNQDLHTDSKQSNLTNGECVASGGSSEPSSSLLVAAQVREVIPPNALPNGTVQHILVPDDDEDLCWKKVDLGDLRNVDVLSFSHPPSFKFLSNSCWSKPKEDKAVDTSDLEVAEDPMGLQGIDLITAALLFCLGDSPGGRGISDSRMADVYHVDFGTQTFSLPSTILATDTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQRPMFTFVCGQLFRRKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSTQGAKIIHDHHLRSFGVQPSVSTVLVEPARNCVLGLHSDHLSSLPFEVLQHIAGFLDGFSLCQLSCVSKLMRDVCGSLLQSRGMVILQWGKKKYPEGNSSWQIKEKVWRFSTAFCSVDEWKFADILSMADHLKKCSYNIVEKREEAIPLPCMCVTRELTKEGRSLRSVLKPVL", "length": 745 }, "evidence": [ { "id": "A0A287ASK2", "url": "https://omabrowser.org/oma/group/A0A287ASK2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HXS5-1", "protein_name": "F-box only protein 30", "gene_name": "Fbxo30", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEEEVQQHSHCVNCISRRCMTRPEPGIACDLIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNSNFGCPFTMARNKVAEHLEMCPASVVCCTMEWNRWPVSYADRKSYENLSRDVDEVAQLDMALALQDQRMLLESLKVATMMSKATDKISEPREQISVKSSVQEIPCTNGLVSVDEESYGALYQATVETTRSLAAALDILNSATRDIGMLNTSLSATTDEMDENNRESFQERNLKSQDHLYEEEMGAVGGVDHNGISQNAQSEQNGSSDLLCDLSTSSLGTAALCNGFPLENMCSQIKEQDQKFPGDSIDNNIENGECAAADGTSEPSSSLLVAAQLREVIPFSALPDSTFQHILMTDEDDDEDLYWKKVDLGDVKDVDDSPFSHAPSFKFLSNSWYIPKEDKAVDTSDLEVAEDPMDLQGIDLITAALLFCLGDSPGGRGISDSRMVDVYHIDFGTQTFSLPSAILATNTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQRSMFTFVCGQLFRRKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSTQGAKIIHDRHLRSFGVQPCVSTVLEEPSRNCVLGLRSDHLSSLPFEVLQHIAGFLDGFSLCQLACVSRLMRDVCGSLLQSRGMVILQWGKKKYPEGNSSWQIKEKVWRFSTAFCSVNEWKFADILSMADHLKTCSYNVIEKREEAIPLPCMCVTRELTKEGRSLRSVLKPVL", "length": 745 }, "evidence": [ { "id": "A0A287ASK2", "url": "https://omabrowser.org/oma/group/A0A287ASK2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5XI67-1", "protein_name": "F-box only protein 30", "gene_name": "Fbxo30", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEEEVQQHSHCVNCVSRRCMTRPEPGVSCDLIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNSNFGCPFTLARNKVAEHLEMCPASVVCCTMEWNRWPVSYSDRKSYESLSRDADEVSQLDMALALQDQRMLLESLKVATMMSKATGKISKPREQISVNSSVQEVPRANGLVSADEESYGALYEATVETTRSLAAALDILNSATRDIGMLNTSLQGTTNEMDEESNRESSQDRNAKDQDHLDEGEIGAVGGIDYTGTSQNAQAEQNGSSDLLCNLNTSSYDTSALCNGFPLEKMCTQVKDQDQNFHGDSTESNITNGDCVEADGTSEPPSSLLVAEQLKEGSALPDSTYQHILMPDEDDDEDLCWKKDLGDSKDVNGSPLSHATSFKFLSNSWYIPKEDKAVDTSDLEVAEDPMGLQGIDLITAALLFCLGDSPGGRGISDSRMVDVYHVDFGTQTFSLPSAILATNTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQRSMFTFVCGQLFRRKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSTQGAKIIHDRHLRSFGVQPCVSTALEEPSRNCVLGLRSDHLSSLPFEVLQHIAGFLDGFSLCQLACVSRLMRDICGSLLQSRGMVILQWGKKKYPEGNSSWQIKEKVWRFSTAFCSVNDWKFADILSMADHLKKCSYNVIEKREEAIPLPCMCVTRELTKEGRSLRSVLKPVL", "length": 742 }, "evidence": [ { "id": "A0A287ASK2", "url": "https://omabrowser.org/oma/group/A0A287ASK2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BJL1-1", "protein_name": "F-box only protein 30", "gene_name": "Fbxo30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEEVQQHSHCMNCVSRRCMTRPEPGVSCDLIGCPLVCGAVFHSCKADEHRLLCPFERVACLNRNFGCPFTLARNKVAEHLEMCPASVVCCTMEWNRWPVSYSDRKSYESLSRDVDEVAQLDMALALQDQRMLLESLKVATMMSKATDKISEPREQISVKSSVQEIPRTNGLVSVDEESYGALYQATVETTRSLAAALDILNSATRDIGMLNTSLHATANEMDEENNKESFQDKNLKDQDHLDEGEIGAVGGVDYSGTSQNAQAEQNGSSDLLCDLNPSSNGTSALCNGFPLEKMCIQVKGQDQNFHGDSTESNITNGDCVEADGTSEPSSSLVVPEQLREISPFSALPDSTFQQILMPDEDDEKDLCWKKVDLGDLKDVNGSPFSHAPSFKFLSNSWYIPKEDKAVDTSDLEVAEDPMGLQGIDLITAALLFCLGDSPGGRGISDSRMTDVYHVDFGTQTFSLPSAILATNTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQRSMFTFVCGQLFRRKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSTQGAKIIHDRHLRSFGVQPCVSTVLEEPSRNCVLGLRSDHLSSLPFEVLQHIAGFLDGFSLCQLACVSRLMRDVCGSLLQSRGMVILQWGKKKYPEGNSSWQIKEKVWRFSTAFCSVNDWKFADILSMADHLKNCSYNVIEKREEAIPLPCMCVTRELTKEGRSLRSVLKPVL", "length": 746 }, "evidence": [ { "id": "A0A287ASK2", "url": "https://omabrowser.org/oma/group/A0A287ASK2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TB52-1", "protein_name": "F-box only protein 30", "gene_name": "FBXO30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"MDRRNDSDCKMPLFQGPLPPPGSLGLHFPPDIQAETTEEDSVLLMHTLLAATKDPLAMDPPVANRPKKSKTKKAPIKAITKTIPAAPPVPSANVITTNKPKITFHALNLPVIPQINQASATIEASNTQASSSTTQPKKASKTKRITAKAVQGSQFPAGSESVTIQIKSSLQALNLPVIPQAIQAPVASESANSQALLASTRPKKAYKAKKADNKGVASAAEISLAPSTAYTATIQGQITSTQTKNASKAKKATIKGTNTDPELLESPDATETATRQIEASTAAIWPKKSKGKKAANKGPNSVCEISDAPPATQMVTNQALAATLRVKRGFRAQKVATKAWTTESQNQIEQGARAKMATSQTNVSALETQVAAAVQALADDYLAQLSLEPTTRTQGKRKQKYKYLNGDERGGGIYRRIQWGRRPPLSRDVAILQERANKLVKYLLVKDQTKIPIKRSDMLKDVIQEYDEYFPEIIERASYALEKMFRVNLKEIDKQSSLYILISIQESSAGILGTTKDTPKLGLLMVILSVIFMNGNKANEAIIWEVLRKLGLHPGVRHSLFGEVRKLITDEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACKVQKKDPKDWAAQYREAVEMEVQAAAVAVAEAEARAEARAQMGIGEEAVAGPWNWDDMDIDCLTREELGDDAQAWSRFSFEIEARDQENANASTNIDFSRGASTRANFSDGASICFSGAPSPSDGFGGRDGISFGSTCSTSATFSSTASISFGGTHYTSGSFSSAANICFGGMPNTCSTFSGGASISFGGAASTSSSFSSEASISFGGTPCTSANFAGGVSPSFSGPLNTSTSFSGGASSGFGGTLSATAGFNDALITTTSFGSTLGTSAVFSGALSTSTAFGGTLSTSVYFGGSPSSSASFGGTLSTSICFSGSPSTSTGFDGVFSTSVSFGGSSSTSTDFSGTLSTSVCFGDSLSTSSSFGGALSTSVGFGGALSTSVGFGGALNTSAGFSSAVSINTGFNSVPSTNSGFSSVFSTSADFSGALNTTTDFGSASSTSIGFGGAPSTSFCFGSLSNTNLCFGGPPSTNTCFSGPTNASFGDGLSTGAGFSFGDGLNTSTGFSGGLSSSSSFGGGLSTSTGFGGGLISSDVFGGGLGTSAGFGSTLGTRANFCSSLSISDGFGSEPNTSFDGGLSTIIGFASSSNTSTGFTGEPSTSTSFIGGPSSIVGFGSGLSTDAGFNSGPSNAAGFGGGGTSLGACSFSYG", "length": 1258, "header": "tr|A0A287ASX0-1|A0A287ASX0_PIG Isoform 1 of Trophinin OS=Sus scrofa OX=9823 GN=TRO PE=4 SV=3 CANONICAL=A0A287ASX0-1" }, "isoforms": [ { "isoform_ac": "A0A287ASX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASX0/entry#A0A287ASX0-1", "sequence": { "sequence": "MDRRNDSDCKMPLFQGPLPPPGSLGLHFPPDIQAETTEEDSVLLMHTLLAATKDPLAMDPPVANRPKKSKTKKAPIKAITKTIPAAPPVPSANVITTNKPKITFHALNLPVIPQINQASATIEASNTQASSSTTQPKKASKTKRITAKAVQGSQFPAGSESVTIQIKSSLQALNLPVIPQAIQAPVASESANSQALLASTRPKKAYKAKKADNKGVASAAEISLAPSTAYTATIQGQITSTQTKNASKAKKATIKGTNTDPELLESPDATETATRQIEASTAAIWPKKSKGKKAANKGPNSVCEISDAPPATQMVTNQALAATLRVKRGFRAQKVATKAWTTESQNQIEQGARAKMATSQTNVSALETQVAAAVQALADDYLAQLSLEPTTRTQGKRKQKYKYLNGDERGGGIYRRIQWGRRPPLSRDVAILQERANKLVKYLLVKDQTKIPIKRSDMLKDVIQEYDEYFPEIIERASYALEKMFRVNLKEIDKQSSLYILISIQESSAGILGTTKDTPKLGLLMVILSVIFMNGNKANEAIIWEVLRKLGLHPGVRHSLFGEVRKLITDEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACKVQKKDPKDWAAQYREAVEMEVQAAAVAVAEAEARAEARAQMGIGEEAVAGPWNWDDMDIDCLTREELGDDAQAWSRFSFEIEARDQENANASTNIDFSRGASTRANFSDGASICFSGAPSPSDGFGGRDGISFGSTCSTSATFSSTASISFGGTHYTSGSFSSAANICFGGMPNTCSTFSGGASISFGGAASTSSSFSSEASISFGGTPCTSANFAGGVSPSFSGPLNTSTSFSGGASSGFGGTLSATAGFNDALITTTSFGSTLGTSAVFSGALSTSTAFGGTLSTSVYFGGSPSSSASFGGTLSTSICFSGSPSTSTGFDGVFSTSVSFGGSSSTSTDFSGTLSTSVCFGDSLSTSSSFGGALSTSVGFGGALSTSVGFGGALNTSAGFSSAVSINTGFNSVPSTNSGFSSVFSTSADFSGALNTTTDFGSASSTSIGFGGAPSTSFCFGSLSNTNLCFGGPPSTNTCFSGPTNASFGDGLSTGAGFSFGDGLNTSTGFSGGLSSSSSFGGGLSTSTGFGGGLISSDVFGGGLGTSAGFGSTLGTRANFCSSLSISDGFGSEPNTSFDGGLSTIIGFASSSNTSTGFTGEPSTSTSFIGGPSSIVGFGSGLSTDAGFNSGPSNAAGFGGGGTSLGACSFSYG", "length": 1258, "header": "tr|A0A287ASX0-1|A0A287ASX0_PIG Isoform 1 of Trophinin OS=Sus scrofa OX=9823 GN=TRO PE=4 SV=3 CANONICAL=A0A287ASX0-1" }, "locus": { "chromosome": "X", "start_pos": 47771603, "end_pos": 47763441, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050327.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050327.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047197.3", "url": "https://www.ensembl.org/id/ENSSSCP00000047197.3" } ] } }, { "isoform_ac": "A0A5G2QNI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASX0/entry#A0A5G2QNI5-1", "sequence": { "sequence": "MDRRNDSDCKMPLFQYKYLNGDERGGGIYRRIQWGRRPPLSRDVAILQERANKLVKYLLVKDQTKIPIKRSDMLKDVIQEYDEYFPEIIERASYALEKMFRVNLKEIDKQSSLYILISIQESSAGILGTTKDTPKLGLLMVILSVIFMNGNKANEAIIWEVLRKLGLHPGVRHSLFGEVRKLITDEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACKVQKKDPKDWAAQYREAVEMEVQAAAVAVAEAEARAEARAQMGIGEEAVAGPWNWDDMDIDCLTREELGDDAQAWSRFSFEIEARDQENANASTNIDFSRGASTRANFSDGASICFSGAPSPSDGFGGRDGISFGSTCSTSATFSSTASISFGGTHYTSGSFSSAANICFGGMPNTCSTFSGGASISFGGAASTSSSFSSEASISFGGTPCTSANFAGGVSPSFSGPLNTSTSFSGGASSGFGGTLSATAGFNDALITTTSFGSTLGTSAVFSGALSTSTAFGGTLSTSVYFGGSPSSSASFGGTLSTSICFSGSPSTSTGFDGVFSTSVSFGGSSSTSTDFSGTLSTSVCFGDSLSTSSSFGGALSTSVGFGGALSTSVGFGGALNTSAGFSSAVSINTGFNSVPSTNSGFSSVFSTSADFSGALNTTTDFGSASSTSIGFGGAPSTSFCFGSLSNTNLCFGGPPSTNTCFSGPTNASFGDGLSTGAGFSFGDGLNTSTGFSGGLSSSSSFGGGLSTSTGFGGGLISSDVFGGGLGTSAGFGSTLGTRANFCSSLSISDGFGSEPNTSFDGGLSTIIGFASSSNTSTGFTGEPSTSTSFIGGPSSIVGFGSGLSTDAGFNSGPSNAAGFGGGGTSLGACSFSYG", "length": 873, "header": "tr|A0A5G2QNI5-1|A0A287ASX0_PIG Computationally mapped isoform of Trophinin OS=Sus scrofa OX=9823 GN=TRO PE=4 SV=2 CANONICAL=A0A287ASX0-1" }, "locus": { "chromosome": "X", "start_pos": 47771603, "end_pos": 47763441, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070089.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070089.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059876.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059876.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Trophinin is expressed in the porcine endometrium during the estrous cycle.", "journal": "The Journal of reproduction and development", "date": "2003-04", "authors": "Nakano Saeko, Kishi Hisashi, Ogawa Hidehiko, Yasue Hiroshi, Okano Akira, Okuda Kiyoshi", "evidence": [ { "database": "RefSeq", "id": "NP_998906", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_998906" } ], "reference": [ { "type": "PubMed", "id": "14967937", "url": "https://glygen.org/publication/PubMed/14967937" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNI5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:396561", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:396561", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A287ASX0", "url": "https://www.uniprot.org/uniprotkb/A0A287ASX0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287ASX0", "url": "https://www.uniprot.org/uniprotkb/A0A287ASX0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1000, "end_pos": 1002, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1040, "end_pos": 1042, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1090, "end_pos": 1092, "annotation": "n_glycosylation_sequon" }, { 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"https://www.uniprot.org/uniprotkb/A0A287ASX0" }, { "id": "PS50838", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50838" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MAGE", "eco_id": "ECO_0000259", "start_pos": 432, "end_pos": 630, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1000, "end_pos": 1002 }, { "start_pos": 1040, "end_pos": 1042 }, { "start_pos": 1090, "end_pos": 1092 }, { "start_pos": 1110, "end_pos": 1112 }, { "start_pos": 1180, "end_pos": 1182 }, { "start_pos": 1198, "end_pos": 1200 }, { "start_pos": 245, "end_pos": 247 }, { "start_pos": 362, "end_pos": 364 }, { "start_pos": 5, "end_pos": 7 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"Protein" ] } ], "sequence": { "sequence": "MLAENLVEEFEMKEDEPWYDHQDLQQDLQLAAELGKTLLDRNTELEDSLQQMYTTNQEQLQEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNHKLVADSKASQQKILSLTETIECLQTNIDHLQSQVEELKSSGQRRRSQEKHDQEKSAPSFSCLKELYDLRQHFVYDHVFAEQITSLQSRQSPDEEENEHLKKTVTMLQAQLSLERQKRVTMEEEFGLVLKENRDLERQLGATDTYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVPDSLFAPFREPSQSLLEEMLLTPPEAPRKPLKRSSSETVLSSLAGGDIVKGHEETCIRRAKAVKQRGVSLLHEVDTQYSALKVKYEELLKKCQQDEDSLSHKAVQTSRAPAKELAAVGAQPEPGTSGWEPASVTPEPMASPTASTPPEYKALFKEIFSCIKKTKQEIDEQRTKYRSLSSHS", "length": 456, "header": "tr|A0A287AT17-1|A0A287AT17_PIG Isoform 1 of Cerebellar deration related protein 2 OS=Sus scrofa OX=9823 GN=CDR2 PE=3 SV=1 CANONICAL=A0A287AT17-1" }, "isoforms": [ { "isoform_ac": "A0A287AT17-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT17/entry#A0A287AT17-1", "sequence": { "sequence": "MLAENLVEEFEMKEDEPWYDHQDLQQDLQLAAELGKTLLDRNTELEDSLQQMYTTNQEQLQEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNHKLVADSKASQQKILSLTETIECLQTNIDHLQSQVEELKSSGQRRRSQEKHDQEKSAPSFSCLKELYDLRQHFVYDHVFAEQITSLQSRQSPDEEENEHLKKTVTMLQAQLSLERQKRVTMEEEFGLVLKENRDLERQLGATDTYRARALELEAEVAEMRQMLQSEHPFVNGVEKLVPDSLFAPFREPSQSLLEEMLLTPPEAPRKPLKRSSSETVLSSLAGGDIVKGHEETCIRRAKAVKQRGVSLLHEVDTQYSALKVKYEELLKKCQQDEDSLSHKAVQTSRAPAKELAAVGAQPEPGTSGWEPASVTPEPMASPTASTPPEYKALFKEIFSCIKKTKQEIDEQRTKYRSLSSHS", "length": 456, "header": "tr|A0A287AT17-1|A0A287AT17_PIG Isoform 1 of Cerebellar deration related protein 2 OS=Sus scrofa OX=9823 GN=CDR2 PE=3 SV=1 CANONICAL=A0A287AT17-1" }, "locus": { "chromosome": "3", "start_pos": 23832036, "end_pos": 23797089, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039124.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039124.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047242.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047242.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AT17", "url": "https://www.uniprot.org/uniprotkb/A0A287AT17" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626193", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626193", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GL37-1", "protein_name": "Cerebellar degeneration-related protein 2", "gene_name": "Cdr2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEHATVKANQSQEGNEDSNGLKIGQDFHVVRDEATEKDAGGAHQGCHLVNSGQLQPALVPGGSLCKQATLGLLYPGVGAVKCTQGNYQLESDLQLAAELGKTLLDRNTELEDSLQQMYTTNQEQLQEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLVAESKASQQKILSLTETIECLQTNIDHLQSQVEELKSNQGRGRQKACDQERPAPSFSCLKELYDLRQHFVYDHVFAEKITSLQSQQSPDEEENEHLKKAVTMLQAQLSLERKKRVSVEAEYKVVLKENSELEQQLSATDAYRARAQELEAEVAEMRQMLQAEHPFVNGVEKLVPDSLFVPFKEPSQSLLEEMFLAAPEAHRKPLKRSSSETVLSSLAGDDIVKDHEDTCIRRAKAVKQRGISLLHEVDTQYSALKVKYEELLRKCQQEQDSLSHKAVQTSRLLTRDLTGLVPQSEAGASGWEPTPVSPEPISSPTTTPPEYKALFKEIFSCIKKTKQEIDEQRTKYPSLSPYS", "length": 519 }, "evidence": [ { "id": "A0A287AT17", "url": "https://omabrowser.org/oma/group/A0A287AT17/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0ZFY3-1", "protein_name": "Cerebellar deration related protein 2", "gene_name": "CDR2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLADSLVEEFEIREDEPWYDQQDLQQDLHLAAELGKTLLDRNTELEESLQQMYATNQEQLQEIEYLTKQVELLRQMNDQHAKVYEQLDVTARELEDTNQKLVAESRASQQKILSLTETIENLQTHVDDLQRQVEELKKSGRGRMNHERSDQPRSMHSFSCLKELYDLRQYFVYDHVFAEKITSMDSQLNPLEEENENLKKAVTVLQAQLNLEKEKRVTMEEEYSLVVKENCDLEQRLVDIDLYRARAEELEVEVAEMRQMLQSENTIHSAEKLVPESFFISFKESLERELGQSPADDGLLTVPELDKKALKRSSSENFLSSAAGGDILRGHEETCIRRAEAVKQRGISVLNEVDAQYNALKVKYEELLKKCQIDEDSLKHKAVQTLKQYSKDSVGNTQYDLSANNQEFTNAGELLSSTNTLPEYKALFKEIFSCIKKTKEEIDEHRSKYKSLSSQP", "length": 456 }, "evidence": [ { "id": "A0A287AT17", "url": "https://omabrowser.org/oma/group/A0A287AT17/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E7FC97-1", "protein_name": "Cerebellar degeneration-related protein 2", "gene_name": 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"interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AT33-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 173, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AT33-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AT33" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AT33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AT33" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 111, "start_aa": "Ala", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 35, "end_pos": 37 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AT51-1", "uniprot_ac": "A0A287AT51", "uniprot_id": "A0A287AT51_PIG", "mass": { "chemical_mass": 102535.0, "monoisotopic_mass": 102535.0 }, "refseq": {}, "gene_names": [ { "name": "CIP2A", "type": "recommended", "evidence": [ { "id": "A0A287AT51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AT51" } ] } ], "protein_names": [ { "name": "Cellular inhibitor of PP2A", "type": "synonym", "evidence": [ { "id": "A0A287AT51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AT51/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AT51", "url": "https://www.uniprot.org/uniprotkb/A0A287AT51" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CIP2A", "url": "https://www.uniprot.org/uniprotkb/A0A287AT51", "locus": { "chromosome": "13", "start_pos": 150966424, "end_pos": 150934106, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033593", "url": "https://www.ensembl.org/id/ENSSSCG00000033593" } ] } } ], "crossref": [ { "id": "ENSSSCG00000033593", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033593", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042510", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042510", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HHVQSTE", "url": "https://omabrowser.org/oma/group/HHVQSTE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AT51", "url": "https://www.orthodb.org/?gene=A0A287AT51", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23161:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23161:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21044", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21044", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AT51", "url": "https://www.uniprot.org/uniprotkb/A0A287AT51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AT51-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT51-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSTACFKSLLLTISQYKAVKSEANATQLLRHLEVISGQKLTRLFTSNQILPSECLSCLVELLEDPNISVPLILSIVSLLSQLAVDNETRDCLQNTYNLNSVLAGVVCRSSTCHSDSVFLQCLQLLQRLTYNVKIFHSGANIDELITFLIDHIQSSEDELTMPCLGLLANLCRHNLSVQTHIKTLNNVKSFYRTLISFLAHSSLTVVVFALSILSSLTLNEEVGEKLFHARNIHQTFQLIFNILINGDGTLTRKYSVDLLMDLLKNPKIADYLTRYEHFSSCLNQVLGLLNGKDADSSSKVLELLLAFCSVTQLRHVLTQMIFEQSPSGNTILGSRSKCLEPTVVLLRWSSQPLDGSEDCSILALELFKEIFEDIIDTANCSSADRFVTLLLPTILDQLQFTEQNLDESLIRKKCERMVKAIEVLLTLCGDDTLKMHIAKILTTIKCTTLIEQQFTYGKIDLGFGTKVADSELCKLAADVILKTLNLMNKLKHLVPGMEVSFYKILQDPRLITPLAFALTSDNREQVQSGLGILLEAAPLPDFPALVLGESIAANNAYRQQETEHMPRRMPLQSLNHSFPASVKCLTPPVLKDRVPGLNIEELIEKLQSGVVVKDQINDVRISDIMDVYEMKLSTLASKESRLQDLLEAKALALAQADRLIAQYRCQRTQAETEARTLAGMLREVERKNEELGVLLKSQQVESERAQSDIEHLFQHNRKLESVAEEHEVLTKSYMELLQRNETAEKKNKDLQVTCDSLNKQIETVKKLNESLKQQNEKTLAQLIEKEEQRKEVQNQLVDRECKLTKLEQKVKVQEEKIKVLQREREDKEETIGVLRKELNRTEQIRKELSIKASSLEVQKAQLEGRLEEKESLVKLQQEELNKHSHMIAMIHSLSGGKISPETVNLSI", "length": 908, "header": "tr|A0A287AT51-1|A0A287AT51_PIG Isoform 1 of Cellular inhibitor of PP2A OS=Sus scrofa OX=9823 GN=CIP2A PE=4 SV=1 CANONICAL=A0A287AT51-1" }, "isoforms": [ { "isoform_ac": "A0A287AT51-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT51/entry#A0A287AT51-1", "sequence": { "sequence": "MDSTACFKSLLLTISQYKAVKSEANATQLLRHLEVISGQKLTRLFTSNQILPSECLSCLVELLEDPNISVPLILSIVSLLSQLAVDNETRDCLQNTYNLNSVLAGVVCRSSTCHSDSVFLQCLQLLQRLTYNVKIFHSGANIDELITFLIDHIQSSEDELTMPCLGLLANLCRHNLSVQTHIKTLNNVKSFYRTLISFLAHSSLTVVVFALSILSSLTLNEEVGEKLFHARNIHQTFQLIFNILINGDGTLTRKYSVDLLMDLLKNPKIADYLTRYEHFSSCLNQVLGLLNGKDADSSSKVLELLLAFCSVTQLRHVLTQMIFEQSPSGNTILGSRSKCLEPTVVLLRWSSQPLDGSEDCSILALELFKEIFEDIIDTANCSSADRFVTLLLPTILDQLQFTEQNLDESLIRKKCERMVKAIEVLLTLCGDDTLKMHIAKILTTIKCTTLIEQQFTYGKIDLGFGTKVADSELCKLAADVILKTLNLMNKLKHLVPGMEVSFYKILQDPRLITPLAFALTSDNREQVQSGLGILLEAAPLPDFPALVLGESIAANNAYRQQETEHMPRRMPLQSLNHSFPASVKCLTPPVLKDRVPGLNIEELIEKLQSGVVVKDQINDVRISDIMDVYEMKLSTLASKESRLQDLLEAKALALAQADRLIAQYRCQRTQAETEARTLAGMLREVERKNEELGVLLKSQQVESERAQSDIEHLFQHNRKLESVAEEHEVLTKSYMELLQRNETAEKKNKDLQVTCDSLNKQIETVKKLNESLKQQNEKTLAQLIEKEEQRKEVQNQLVDRECKLTKLEQKVKVQEEKIKVLQREREDKEETIGVLRKELNRTEQIRKELSIKASSLEVQKAQLEGRLEEKESLVKLQQEELNKHSHMIAMIHSLSGGKISPETVNLSI", "length": 908, "header": "tr|A0A287AT51-1|A0A287AT51_PIG Isoform 1 of Cellular inhibitor of PP2A OS=Sus scrofa OX=9823 GN=CIP2A PE=4 SV=1 CANONICAL=A0A287AT51-1" }, "locus": { "chromosome": "13", "start_pos": 150962900, "end_pos": 150934165, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058060.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058060.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047037.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047037.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AT51", "url": "https://www.uniprot.org/uniprotkb/A0A287AT51" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZXN3-1", "protein_name": "Cellular inhibitor of PP2A", "gene_name": "Cip2a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSTACLKSLLLSISQYKAVKSEANATQLLRHLEVVSGQKLTRLFTSQQILPSECLSCLVELLEDPNISASLILSIISLLSQLAIDNETRDCLQNIYNLNSVLSGVVCRSSTCHNNSVFLQCIQLLQRLTYNVKFFHSGAHIDDLITFLIGHIQSSEDELTMPCLGLLANLCRHNLSVQTQIKTLSNVKSFYRTLISFLAHSSLTVVVFALSILSSLTLNEEVGEKLFHARNIHQTFQLIFNILINGDGTLTRKYSVDLLMDLLKNPKIADYLTRYEHFSSCLNQVLGLLNVKDPDSSSKVLELLLAFCAVTQLRHVLSQMMFEQPPSGNNILGSRSPKSLEPIVALLRWLSQPLDGADNCAVLALELFKEIFEDVIDTGNCSSTDRFVTLLLPTILDQLQFTEQNLDETLIKNKCERMVKAIEASMMLWAYDTLKTHVVKILTTMKCSMLIEQQFTYGKIDLGFGTKVADSELCKLAADVILKTLILMNKLKQLVPGMEVSFYKILQDPRLITPLAFALTSDNREQVQSGLGILLEAAPLPDFPALVLGESIAANNVYRQQETERLPRKMTLQPLNHCLSASAKCLTPPLSKDNAPALNIEDLIEKLQAGVMVKDQINDIRISDIMDVYEMKLSTLASKESRLQDLLEAKALALAQADRLIAQYRCQRTQAETEARTLAGMLRDVERKNEELSVLLKSQQLESERAQNDIEHLFQHSKKLESVAEEHEILTKSYMELVQRNEDMEKKNADLQTTCESLNKHIETVKKLNESLKQQNEKTIAQLIEKEEQRKEVQSQLVDRECKLSNLHKKSKSQEEKINVLQKEKEDKQETIDILRKELSRTEQIRKELSIKASSLEMQKAQLEGRLEEKESLVKLQQDELNKHSHMIAMIHSLSGGKISPETVNLSI", "length": 909 }, "evidence": [ { "id": "A0A287AT51", "url": "https://omabrowser.org/oma/group/A0A287AT51/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BWY9-1", "protein_name": "Protein CIP2A", "gene_name": "Cip2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSTACLKSLLLSISQYKAVKSEANATQLLRHLEVVSGQKLTRLFTSHQILPSECLSCLVELLEDPNISASLILSIISLLSQLAIDNETRDCLQNIYNLNSVLSGVVCRSSACHNDSVFLQCIQLLQRLTYNAKFFHSGAHIDDLITFLIGHVQSSEDELTMPCLGLLANLCRHNLSVQTQIKTLSNVKSFYRTLISFLAHSSLTVVVFALSILSSLTLNEEVGEKLFHARNIHQTFQLIFNILINGDGTLTRKYSVDLLMDLLKNPKIADYLTRYEHFSSCLSQVLGLLNAKDPDSSSKVLELLLAFCAVTQLRHVLSQMMFEQSPSGNILGSRPKSLEPTAALLRWLSQPLDGAENCSVLALELFKEIFEDVIDTGNCSSTDHFVTLLLPTILDQLQFKEQNLDETLVRNKCERMVKAIEVLLTLCGDDSLKMHVVKILTTLKCTTLIEQQFTYGKIDLGFGTKVADSELCKLAADVILKTLTLMNKLKQLVPGMEVSFYKILQDPRLITPLAFALTSDNREQVQSGLGILLEASPLPDFPAFVLGESIAANNVYRQQETEHLPRKMTFQPLNHGFSTSAKCLTPPPSKDNAPALNIEDLIEKLQAGVMVKDQISDIRISDIMDVYEMKLSTLASKESRLQDLLEAKALALAQADRLIAQYRCQRTQAETEARTLAGMLREVERKNEELSVLLKSQQLESERAQNDIEHLFQHSKKLESVAAEHEILTKSYMELVQRNEATEKKNTDLQTTCESLNKHIETMKKLNEALKQQNEKTIAQLIEKEEQRKEVQSQLADRECKLSNLHKIAKSQEEKLNVLQKEKEDKQETIDILRKELSRTEQIRKELSIKASSLEMHKAQLEGRLEEKESLLKLQQEELNKHSHMIAMIHSLSGGKISPETVNLSI", "length": 907 }, "evidence": [ { "id": "A0A287AT51", "url": "https://omabrowser.org/oma/group/A0A287AT51/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TCG1-1", "protein_name": "Protein CIP2A", "gene_name": "CIP2A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDSTACLKSLLLTVSQYKAVKSEANATQLLRHLEVISGQKLTRLFTSNQILTSECLSCLVELLEDPNISASLILSIIGLLSQLAVDIETRDCLQNTYNLNSVLAGVVCRSSHTDSVFLQCIQLLQKLTYNVKIFYSGANIDELITFLIDHIQSSEDELKMPCLGLLANLCRHNLSVQTHIKTLSNVKSFYRTLITLLAHSSLTVVVFALSILSSLTLNEEVGEKLFHARNIHQTFQLIFNILINGDGTLTRKYSVDLLMDLLKNPKIADYLTRYEHFSSCLHQVLGLLNGKDPDSSSKVLELLLAFCSVTQLRHMLTQMMFEQSPPGSATLGSHTKCLEPTVALLRWLSQPLDGSENCSVLALELFKEIFEDVIDAANCSSADRFVTLLLPTILDQLQFTEQNLDEALTRKKCERIAKAIEVLLTLCGDDTLKMHIAKILTTVKCTTLIEQQFTYGKIDLGFGTKVADSELCKLAADVILKTLDLINKLKPLVPGMEVSFYKILQDPRLITPLAFALTSDNREQVQSGLRILLEAAPLPDFPALVLGESIAANNAYRQQETEHIPRKMPWQSSNHSFPTSIKCLTPHLKDGVPGLNIEELIEKLQSGMVVKDQICDVRISDIMDVYEMKLSTLASKESRLQDLLETKALALAQADRLIAQHRCQRTQAETEARTLASMLREVERKNEELSVLLKAQQVESERAQSDIEHLFQHNRKLESVAEEHEILTKSYMELLQRNESTEKKNKDLQITCDSLNKQIETVKKLNESLKEQNEKSIAQLIEKEEQRKEVQNQLVDREHKLANLHQKTKVQEEKIKTLQKEREDKEETIDILRKELSRTEQIRKELSIKASSLEVQKAQLEGRLEEKESLVKLQQEELNKHSHMIAMIHSLSGGKINPETVNLSI", "length": 905 }, "evidence": [ { "id": "A0A287AT51", "url": 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"MATLRNHLSAGGGLNHSGPDSPQEPQDAGATLAIGYVREFRMRVACFQVQRSEESLVYVQRSVALLGTKVLPAHFAPTPGNLELARFYVDLYALMGALKNEGAEGDVLWACVGLVQHCSRNLEARQAVVEHFCFVPLLGVLIRHTKRTERVHRLLVLLQDLTYGIKIAWEEPFLAALIEHLVGIVLCTEDVSCTASGGSVRDDDDENTMLALSVLVNLCYKNFAVLFLFLRSVNISAFCRRIQNYGLLAYKMLIILSEDVYSFQQSELCTFLRLSFAGIEDCLKHWNVAQLRHIVDFLLDSQSHPGLHRAMLSHGHFCEDFEKLLDQIDTSNGMDVSQEETSKHQQISLGLVFRLVSYILQMSEEANSCISLDAITPRLYEMVSDWMSSDQCGAAAIELICTLLRLGKRAAVAEMIANDPSHVAKLVASAERPDTDAGQVLATLRLLIALLQETKTNKVVLSKISESYFDKILAAPLALVPQFLSTQSLAQCEVEKACFCLLLLVNVAGIAKKAYLDKCCTLLEQPQLQYCLARGMVSKNEALVAAVLQIAQFEHFPKASVAKHVSAITSSPGGMMTKASAVGSDQVEQLRNLSSIFKANRIFTDKDMVQRVNALLDNIGGIVSRNELASAPTSQVIELYNHRIESLNGTVASLQQRLEQAGEQLTIGTQQAHVQSAELERFQSSNFQLLISQERLQTRCKDLKQQKVELKSNMTILLKQLSENSVQLQANERRLTVKKSEIADLQKDCENLRSKLSAKSEELTKLEAHNKENISRIDKLKKSMAAYEQDMTEKLRTIGERDRELAKTQKALEEQREACKKSEDLISVLETQLQERKAQIESLEMEQKETEDLRKTIMSLMESKKPKRKA", "length": 870 }, "evidence": [ { "id": "A0A287AT51", "url": "https://omabrowser.org/oma/group/A0A287AT51/", "database": "OMA" 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"url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AT52" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AT52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AT52" }, { "id": "PS50950", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50950" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "THAP-type", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 82, "start_aa": "Met", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AT65-1", "uniprot_ac": "A0A287AT65", "uniprot_id": "A0A287AT65_PIG", "mass": { "chemical_mass": 59463.0, "monoisotopic_mass": 59463.0 }, "refseq": { "ac": "XP_003483120", "name": "protein FAM222B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483120" }, "gene_names": [ { "name": "FAM222B", "type": "recommended", "evidence": [ { "id": "A0A287AT65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AT65" } ] }, { "name": "FAM222B", "type": "synonym", "evidence": [ { "id": "XP_003483120", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483120" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 222 member B", "type": "synonym", "evidence": [ { "id": "A0A287AT65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AT65/entry#names_and_taxonomy" } ] }, { "name": "protein FAM222B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003483120", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483120" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AT65", "url": "https://www.uniprot.org/uniprotkb/A0A287AT65" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM222B", "url": "https://www.uniprot.org/uniprotkb/A0A287AT65", "locus": { "chromosome": "12", "start_pos": 44986165, "end_pos": 45076178, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039321", "url": "https://www.ensembl.org/id/ENSSSCG00000039321" } ] } } ], "crossref": [ { "id": "ENSSSCG00000039321", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039321", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100738524", "url": "https://www.ncbi.nlm.nih.gov/gene/100738524", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738524", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738524", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MTHYTNG", "url": "https://omabrowser.org/oma/group/MTHYTNG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AT65", "url": "https://www.orthodb.org/?gene=A0A287AT65", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16070", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16070", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16070:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16070:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15258", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15258", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003483120", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483120", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AT65", "url": "https://www.uniprot.org/uniprotkb/A0A287AT65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AT65-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLACLPGPGDLSFQLLSHTQMNTGLQKWDTTQKMRTAHYPTPAELDAYAKKVANNPLTIKIFPNSVKVPQRKHVRRTVNGLDTSAQRYSPYPTQAAAKAGLLAIVKVPAKSILKDFDGTRARLLPEAIMNPPVAPYATVAPSTLAHPQAQALARQQALQHAQTLAHAPPQTLQHPQGIPPPQALSHPQSLQQPQGLGHPQPMAQTQGLVHPQALSHQGLQHPPNPLLHGGRKMPDSDAPPNVTVSTSTIPLSMAATLQHSQPPDLSSIVHQINQFCQTRAGISTTSVCEGQIANPSPISRSLLINASTRVSTHSVPTPMPSCVVNPMEHTHAATAALPAAGPVNLPTGISRAPTGYPSDLKPVAWNQHQLAHLQQMCSEAGGTPAPGLTGKHAAGRELAGPGFVGKAPAYPQELCLAQSFHLKPPLEKPTPSPPVNGLAAPLAYPNGHYFQPLWNNILPTPNSDSSGSQDLAVPFHGGQPAGAPLDCAAAAAAGAHYRAGTGGGPVASHNSLVQTVDYLSGDFQQACFREQSLALLSKAHRAPGSRAPDPTDSRSLHIQHPGYR", "length": 564, "header": "tr|A0A287AT65-1|A0A287AT65_PIG Isoform 1 of Family with sequence similarity 222 member B OS=Sus scrofa OX=9823 GN=FAM222B PE=4 SV=1 CANONICAL=A0A287AT65-1" }, "isoforms": [ { "isoform_ac": "A0A287AT65-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT65/entry#A0A287AT65-1", "sequence": { "sequence": "MLACLPGPGDLSFQLLSHTQMNTGLQKWDTTQKMRTAHYPTPAELDAYAKKVANNPLTIKIFPNSVKVPQRKHVRRTVNGLDTSAQRYSPYPTQAAAKAGLLAIVKVPAKSILKDFDGTRARLLPEAIMNPPVAPYATVAPSTLAHPQAQALARQQALQHAQTLAHAPPQTLQHPQGIPPPQALSHPQSLQQPQGLGHPQPMAQTQGLVHPQALSHQGLQHPPNPLLHGGRKMPDSDAPPNVTVSTSTIPLSMAATLQHSQPPDLSSIVHQINQFCQTRAGISTTSVCEGQIANPSPISRSLLINASTRVSTHSVPTPMPSCVVNPMEHTHAATAALPAAGPVNLPTGISRAPTGYPSDLKPVAWNQHQLAHLQQMCSEAGGTPAPGLTGKHAAGRELAGPGFVGKAPAYPQELCLAQSFHLKPPLEKPTPSPPVNGLAAPLAYPNGHYFQPLWNNILPTPNSDSSGSQDLAVPFHGGQPAGAPLDCAAAAAAGAHYRAGTGGGPVASHNSLVQTVDYLSGDFQQACFREQSLALLSKAHRAPGSRAPDPTDSRSLHIQHPGYR", "length": 564, "header": "tr|A0A287AT65-1|A0A287AT65_PIG Isoform 1 of Family with sequence similarity 222 member B OS=Sus scrofa OX=9823 GN=FAM222B PE=4 SV=1 CANONICAL=A0A287AT65-1" }, "locus": { "chromosome": "12", "start_pos": 45014773, "end_pos": 44988489, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045886.2", "url": "https://www.ensembl.org/id/ENSSSCT00000045886.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047272.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047272.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 383, "start_aa": "Thr", "end_pos": 383, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr383", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 41, "start_aa": "Thr", "end_pos": 41, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr41", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 430, "start_aa": "Thr", "end_pos": 430, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr430", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 551, "start_aa": "Thr", "end_pos": 551, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr551", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 93, "start_aa": "Thr", "end_pos": 93, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr93", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AT65", "url": "https://www.uniprot.org/uniprotkb/A0A287AT65" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738524", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738524", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M9PK94-1", "protein_name": "Uncharacterized protein LOC561123", "gene_name": "fam222ba", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLACLPGPGDLSLQLHPHSQMNTGLQKWDTPQRMRSAQYPTPAELDAYAKKVANNPLTIKIFPNSVKVPQRNHIRRTVNGLDTAGPRYSPYPSSQATAKTGLLAIVKVPLVKGVIKDFDGTRARLHPEVIMNATGGPYAATSASTLNLHHPSQAPSRASQNPQGLPPHPQNLQTLQQQQPGPPHQGLGHRPSSSIPPQHQGLPRPQTLCHAASLGHPSTHPPSAILLPQQHLQNPPASLQVGARKLPVADAPPNVTVSTSTIPLSMAGGLHQGRQADLNSIVHQISQFCQARAQGAGATSMCEGQIANPSPISRNLLINASSRVSVHAGNPNALAPGLMHPSFAIGPPDKMTASAPVSAAPPHNIGAMNHMYHSDLKQQHLQHQSHQLQRNPQHPHMRSWTQHQLPHLQHISEGGGHPCKPPGHDPGLSCKGITYPPEMSMGQPYAMKPSSPSPPLVNNNSSNAMPPGAVTHYTNGQYYHQPPVWGSILPTPNSDSSGSQDLPVSFHGTGTGNTNPTPGMDCGPTGGAAHYRLVGGALIGQTNLIQTADCMGGDFQTPCFRDQNLILMGKMHRPPPMGRVLVPPSETQGQHPGYR", "length": 595 }, "evidence": [ { "id": "A0A287AT65", "url": "https://omabrowser.org/oma/group/A0A287AT65/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ABK0L6G3-1", "protein_name": "Family with sequence similarity 222, member B", "gene_name": "Fam222b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLACLPGPGDLSFQLLSHTQMNAGLQKWDTTQKMRTAHYPTPAELDAYAKKVANNPLTIKIFPNSVKVPQRKHVRRTVNGLDTSAQRYSPYPTQAATKAGLLAIVKVPAKSILKDFDGTRARVLPEAIMNPPVAPYATVAPSTLAHPQAQALARQQALQHAQTLAHAPPQTLQHPQGIPPPQALSHPQSLQQPQGLGHPQPMAQTQGLVHPQALTHQGLQHPPNPLLHGGRKMPDSDAPPNVTVSTSTIPLSMAATLQHSQPPDLSSIVHQINQFCQTRAGISTTSVCEGQIANPSPISRSLLINASTRVSTHSVPTPMPSCVVNPMEHTHAATAALPAAGPVNLPTGISRAPTGYPSDLKPVTWNQHQLAHLQQMCSEAGGTPAPGLTGKHTAGRELAGPGFVGKAPAYPQELCLAQSFHLKPPLEKPTPSPPVNGLPAPLAYPNGHYFQPLWNNILPTPNSDSSGSQDLAMPFHGGQPTGAPLDCGAAPGAHYRAGTGGGPVASQNSLMQTVDYLSGDFQQACFREQSLAMLSKAHRAPGARAPEPTDSRSLHIQHPGYR", "length": 562 }, "evidence": [ { "id": "A0A287AT65", "url": "https://omabrowser.org/oma/group/A0A287AT65/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BFC5-1", "protein_name": "Family with sequence similarity 222 member B", "gene_name": "FAM222B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLACLPGPGDLSFQLLSHTQMNTGLQKWDTTQKMRTAHYPTPAELDAYAKKVANNPLTIKIFPNSVKVPQRKHVRRTVNGLDTSAQRYSPYPTQAATRAGLLAIVKVPAKSILKDFDGTRARLLPEAIMNPPVAPYATVAPSTLAHPQAQALARQQALQHAQTLAHAPPQTLQHPQGIPPPQALSHPQSLQQPQGLGHPQPMAQTQGLVHPQALSHQGLQHPPTPLLHGGRKMPDSDAPPNVTVSTSTIPLSMAATLQHSQPPDLSSIVHQINQFCQTRAGVSTTSVCEGQIANPSPISRSLLINASTRVSTHSVPTPMPSCVVNPMEHTHAASAALPPAGPVNLPAGLSRAPTGYPSDLKPVAWNQHQLAHLQQMCGEAGGTPAPGLTGKHAAGRELAGPGLVGKTPAYPQELCLAQSFHLKPPLEKPTPSPPVNGLAAPLAYPNGHYFQPLWNNILPTPNSDSSGSQDLAVPFHGGQPTGAPLDCAAVAAGAHFRAGTGGGPVASQNSLIQTVDYLSGDFQQACFREQSLAMLSKAHRAPGNRAPDPTDSRSLHVQHPGYR", "length": 563 }, "evidence": [ { "id": "A0A287AT65", "url": "https://omabrowser.org/oma/group/A0A287AT65/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6P539-1", "protein_name": "Protein FAM222B", "gene_name": "Fam222b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLACLPGPGDLSLQLLSHTQMNTGLQKWDTTQKMRTAHYPTPAELDAYAKKVANNPLTIKIFPNSVKVPQRKHVRRTVNGLDTSAQRYSPYPTQAATKAGLLAIVKVPAKSILKDFDGTRARFLPEAIMNPPVAPYATVAPSTLAHPQAQALARQQALQHAQTLAHAPPQTLQHPQGIPPPQALSHPQSLQQPQGLGHPQQMAQTQGLVHPQALTHQGLQHPPNPLLHGGRKMPDSDAPPNVTVSTSTIPLSMAATLQHSQPPDLSSIVHQINQFCQTRAGISTTSVCEGQIANPSPISRSLLINASTRVSTHSVPTPMPSCVVNPMEHTHAATAALPAAGPVNLPTGISRAPTGYPSDLKPVTWNQHQLAHLQQMCSEAGGTPAPGLTGKHTAGRELAGPGFVGKAAAYPQELCLAQSFHLKPPLEKPTPSPPVNGLPAPLAYPNGHYFQPLWNNILPTPNSDSSGSQDLTMPFHGGQPTGAPLDCGAAPGAHYRAGTGGGPVASQNSLMQTVDYLSGDFQQACFREQSLAMLSKAHRAPGTRAPDPTDSRSLHIQHPGYR", "length": 562 }, "evidence": [ { "id": "A0A287AT65", "url": "https://omabrowser.org/oma/group/A0A287AT65/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WU58-1", "protein_name": "Protein FAM222B", "gene_name": "FAM222B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLACLPGPGDLSFQLLSHTQMNTGLQKWDTTQKMRTAHYPTPAELDAYAKKVANNPLTIKIFPNSVKVPQRKHVRRTVNGLDTSAQRYSPYPTQAATKAGLLAIVKVPAKSILKDFDGTRARLLPEAIMNPPVAPYATVAPSTLAHPQAQALARQQALQHAQTLAHAPPQTLQHPQGIPPPQALSHPQSLQQPQGLGHPQPMAQTQGLVHPQALAHQGLQHPHNPLLHGGRKMPDSDAPPNVTVSTSTIPLSMAATLQHSQPPDLSSIVHQINQFCQTRAGISTTSVCEGQIANPSPISRSLLINASTRVSTHSVPTPMPSCVVNPMEHTHAATAALPAAGPVNLPTGISRVPTGYPSDLKPVTWNQHQLAHLQQMCSEASGTPAPGLTGKHAAGRELAGPGFVGKAPAYPQELCLAQSFHLKPPLEKPTPSPPVNGMAAPLAYPNGHYFQPLWNNILPTPNSDSSGSQDLAMPFHGGQPTGAPLDCAAAPGAHYRAGTGGGPVASQNSLMQTVDYLSGDFQQACFREQSLAMLSKAHRAPGNRAPDPTESRSLHIQHPGYR", "length": 562 }, "evidence": [ { "id": "A0A287AT65", "url": "https://omabrowser.org/oma/group/A0A287AT65/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": 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"monoisotopic_mass": 65791.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Coiled-coil domain-containing protein 170-like", "type": "recommended", "evidence": [ { "id": "A0A287AT97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AT97/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AT97", "url": "https://www.uniprot.org/uniprotkb/A0A287AT97" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287AT97", "locus": {} } ], "crossref": [ { "id": "A0A287AT97", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AT97", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002270", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002270", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR039139", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039139", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR18863", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18863", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18863:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18863:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A287AT97", "url": "https://www.uniprot.org/uniprotkb/A0A287AT97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AT97-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKLMSGPLQFLNNSNQGRLAAGQSKGPHKAKPSEVRHLSAHTSQKNSPKACFDPPLEVVPSRNTLAYNRRATDPVRPDLAGLLVKNKNLLAELRNLQNKLFIKETSLQEMKSELESYKENNVQQSFQIMSLKDDIKNLEELIASLTRIKSLKNTNIQSLERGNWDLTERITELENLLREHLVERKKAELKADLLEKKLAGSNRFTPYMSMKGQEDSLDSFMMKDKDEAILAKNFEKDTIFHSEGAKDGQKIWDKCQQDLIHKEKEVPELDGLPYSFSWETKTARSHYQKFLSQLSALTSNSVEPIPAMEEAMAESIQEPGANEPFWMSRTEGLQQEIQMLTKRLEKLYHHCEETAGKLPENTSLKHNFFFSMRFISVKESSGTKISQIDEHGKTFKWLEKDNKQEILNIPQNLQIVTTQRLEEKIQKLRKQLSDLKLSNKNMKIQLTRVNVLKDKTIEKLRQSLSKLEAMKGKKVMETDLKITLDSAEQEAKRDKERAHQMLETITPELCTAKSTPEELVNFRETIMKMLGFNMKTADKKIINHLKLIIQVYEESDKSKIASECETGQDNE", "length": 572, "header": "tr|A0A287AT97-1|A0A287AT97_PIG Isoform 1 of Coiled-coil domain-containing protein 170-like OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=A0A287AT97-1" }, "isoforms": [ { "isoform_ac": "A0A287AT97-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT97/entry#A0A287AT97-1", "sequence": { "sequence": "MAKLMSGPLQFLNNSNQGRLAAGQSKGPHKAKPSEVRHLSAHTSQKNSPKACFDPPLEVVPSRNTLAYNRRATDPVRPDLAGLLVKNKNLLAELRNLQNKLFIKETSLQEMKSELESYKENNVQQSFQIMSLKDDIKNLEELIASLTRIKSLKNTNIQSLERGNWDLTERITELENLLREHLVERKKAELKADLLEKKLAGSNRFTPYMSMKGQEDSLDSFMMKDKDEAILAKNFEKDTIFHSEGAKDGQKIWDKCQQDLIHKEKEVPELDGLPYSFSWETKTARSHYQKFLSQLSALTSNSVEPIPAMEEAMAESIQEPGANEPFWMSRTEGLQQEIQMLTKRLEKLYHHCEETAGKLPENTSLKHNFFFSMRFISVKESSGTKISQIDEHGKTFKWLEKDNKQEILNIPQNLQIVTTQRLEEKIQKLRKQLSDLKLSNKNMKIQLTRVNVLKDKTIEKLRQSLSKLEAMKGKKVMETDLKITLDSAEQEAKRDKERAHQMLETITPELCTAKSTPEELVNFRETIMKMLGFNMKTADKKIINHLKLIIQVYEESDKSKIASECETGQDNE", "length": 572, "header": "tr|A0A287AT97-1|A0A287AT97_PIG Isoform 1 of Coiled-coil domain-containing protein 170-like OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=A0A287AT97-1" }, "locus": { "chromosome": "7", "start_pos": 88464937, "end_pos": 88416033, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041959.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041959.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047308.3", "url": "https://www.ensembl.org/id/ENSSSCP00000047308.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AT97", "url": "https://www.uniprot.org/uniprotkb/A0A287AT97" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AT97-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 572, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AT97-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AT97" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], 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"sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ATA1-1", "uniprot_ac": "A0A287ATA1", "uniprot_id": "A0A287ATA1_PIG", "mass": { "chemical_mass": 55565.0, "monoisotopic_mass": 55565.0 }, "refseq": { "ac": "XP_005668680", "name": "transmembrane protein 104 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005668680" }, "gene_names": [ { "name": "TMEM104", "type": "recommended", "evidence": [ { "id": "A0A287ATA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA1" } ] }, { "name": "TMEM104", "type": "synonym", "evidence": [ { "id": "XP_005668680", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005668680" } ] } ], "protein_names": [ { "name": "Putative sodium-coupled neutral amino acid transporter 12", "type": "recommended", "evidence": [ { "id": "A0A287ATA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA1/entry#names_and_taxonomy" } ] }, { "name": "Solute carrier family 38 member 12", "type": "synonym", "evidence": [ { "id": "A0A287ATA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA1/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 104 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005668680", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005668680" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ATA1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA1" } ], "common_name": "Pig", "glygen_name": "Pig", 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"https://www.orthodb.org/?gene=A0A287ATA1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16189", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16189", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16189:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16189:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005668680", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005668680", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ATA1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ATA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RV67", "url": "https://www.uniprot.org/uniprotkb/F1RV67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RV67-1", "url": "https://www.uniprot.org/uniprotkb/F1RV67-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGEITETGELYSPYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFLGFMSFVTTTFVVEAMAAANAQLRWKRMENHQQEEDDDSSSASDSDVLIQNNYERAEKRPILSVQRRGSPNLFEITDRVEMGQMASMFFNKVGVNLFYFCIIIYLYGDLAIYAAAVPFSLMQVTCALGNDSCGVEADAKYNDTDLCWGPLRRVDAYRIYLAVFTLLLGPFTFFDVQKTKYLQILTSLMRWIAFAIMIVLALVRIGQGRGEGHPPLADLSGVRNLFGVCVYSFMCQHSLPSLVTPVSSKRHLTRLVFLDYVLILAFYGLLSFTAIFCFRGDSLLDMYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLLPPVLVAFCTHDLESLVGITGAYAGTGIQYIIPAFLVYLCRKDTQLAFGYGTVNKHRSPFRHTFWVGFVLLWAFSCFFFVTANIVLSETKL", "length": 495, "header": "tr|A0A287ATA1-1|A0A287ATA1_PIG Isoform 1 of Putative sodium-coupled neutral amino acid transporter 12 OS=Sus scrofa OX=9823 GN=TMEM104 PE=3 SV=1 CANONICAL=A0A287ATA1-1" }, 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"ENSSSCT00000045821.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045821.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047087.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047087.1" } ] } }, { "isoform_ac": "F1RV67-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA1/entry#F1RV67-1", "sequence": { "sequence": "MSGLVSLSCHVWDCVTAHSLLGISKDMSIEITQVPASSYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFLGFMSFVTTTFVVEAMAAANAQLRWKRMENHQQEEDDDSSSASDSDVLIQNNYERAEKRPILSVQRRGSPNLFEITDRVEMGQMASMFFNKVGVNLFYFCIIIYLYGDLAIYAAAVPFSLMQVTCSALGNDSCGVEADAKYNDTDLCWGPLRRVDAYRIYLAVFTLLLGPFTFFDVQKTKYLQILTSLMRWIAFAIMIVLALVRIGQGRGEGHPPLADLSGVRNLFGVCVYSFMCQHSLPSLVTPVSSKRHLTRLVFLDYVLILAFYGLLSFTAIFCFRGDSLLDMYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLLPPVLVAFCTHDLESLVGITGAYAGTGIQYIIPAFLVYLCRKDTQLAFGYGTVNKHRSPFRHTFWVGFVLLWAFSCFFFVTANIVLSETKL", "length": 520, "header": "tr|F1RV67-1|A0A287ATA1_PIG Computationally mapped isoform of Putative sodium-coupled neutral amino acid transporter 12 OS=Sus scrofa OX=9823 GN=TMEM104 PE=3 SV=4 CANONICAL=A0A287ATA1-1" }, "locus": { "chromosome": "12", "start_pos": 6457744, "end_pos": 6407161, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018757.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018757.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018255.5", "url": "https://www.ensembl.org/id/ENSSSCP00000018255.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RV67", "url": "https://www.uniprot.org/uniprotkb/F1RV67" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PQM9-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "TMEM104", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGGITDTGELYSPYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLMFLGFMSYMTTTFVVEAMAAANAQLRWKRMEKRKEDDEDEDSSSGVSDSDVLLRDSYERAETRPILSVQRRGSPNIFEITERVEMGQMASMFFNKVGVNLFYFCIIIYLYGDLAIYAAAVPVSLMQVTCSAIGNHSCNVGDGTKYNDTDKCWGPIRRIDAYRLYLAAFTLLLGPFTFFNVQKTKYLQIMTSLMRWIAFILMIILALIRISRGQAEGHPSMAQLSGIRNLFGVCVYSFMCQHSLPSLITPISKKRHVNKLVLLDYILILAFYSLLSFTAIYCFRNDTLMDMYTLNFTNCEIINVAFIRYFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWLVDRIVFPAITLVPPVLVAFCTHDLESLVGITGAYAGNGIQYLIPAFLAYCSRKDTQLVFGSGTVNKHLSPFRHTFWIVFVLIWGFSCFVFVTANIVLSESKL", "length": 498 }, "evidence": [ { "id": "A0A287ATA1", "url": "https://omabrowser.org/oma/group/A0A287ATA1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8C2M5C4-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "Tmem104", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGEITETGELYSPYVGLVYMFNLIVGTGALTMPKAFASAGWLVSLVLLVFLGFMSFVTTTFVMEAMAAANAQLRWKRMETHKEEEDEDSSTASDSDILTQDNYERAEKRPILSVQRRSSANLFEITDRVEMGQMASMFFNKVGVNLFYFCIIIYLYGDLAIYAAAVPFSLMQVTCSVSGNDSCGVDTDAKYNDTDLCWGPLRRVDAYRIYLAVFTLLLGPFTFFNVQKTKYLQILTSLMRWVAFAIMIVLALVRIGNRQGEGHPPLANFLGVRNLFGVCVYSFMCQHSLPSLITPISSKRHVTRLLFLDYGLILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVSLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPILVAFCTHDLESLVGITGAYAGTGIQYVIPAFLVYLCRKDTQLTFGYGTINKHRSPFRHTLWVAFVLLWAFSCFFFVTANIVLSETQL", "length": 496 }, "evidence": [ { "id": "A0A287ATA1", "url": "https://omabrowser.org/oma/group/A0A287ATA1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E7F9F2-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "slc38a12", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAGGITETGEPYSPFVGLVYMFNLIVGTGALTMPKAFAAAGWVVSVSLITFLAFMSFMTTTFVIEAMAAANAQLRWKRREQEEVNDSDSSSDYSDDEVIIRGRSEPVETRPILSVQRAANIDHFDIVERVEMGQMASMFFNKVGVNMFYICIIVYLYGDLAIYAAAVPVSLMEVACGNHSCSAGSVKYNDTESCWGPVRRKDAYRVFLAIFTLLLGPFTFFNAQKTKYLQILTSLMRWIAFTMMIILALIRIGKGHGEGKPSVAQISGVPNLFGVCVYSFMCQHSLPSLVTPISNKQRMSILVMADYILILCFYALLSLTAIFCFDSSLLRDMYTLNFTDNCDVLGVPVLRYFLGLFPVFTISTNFPIIAVTLRNNWKTLFHRDGGTYPWVVDRVVFPLITLVPPIIVAFCTHDLESLVGITGAYAGTGIQYIIPAFLVYFSRRHLEPVLGRDAVNKHRSPFRHTFWVCFVVLWATFCLMFVTANIVLNETKN", "length": 493 }, "evidence": [ { "id": "A0A287ATA1", "url": "https://omabrowser.org/oma/group/A0A287ATA1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3TB48-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "SLC38A12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGEITETGELYSPYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFVGFMSFVTTTFAMEAMAAANAQLRWKRMETHKEEDDEDSSTASDSDLLSQDNYERAEKRPILSVQRRSSANLFEITDRVEMGQMASMFFNKVGVNLFYFCIITYLYGDLAIYAAAVPVSLMQVTCSVSGNDSCGVDTDARYNDTDLCWGPLRRVDVYRIYLAIFTVLLGPFTFFDVQKTKYLQILTSMMRWIAFAIMIVLALVRIGKGQGEGHPPLANFLGVQNLFGVCVYSFMCQHSLPSLITPISSKRHITRLLFLDYALILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPILVAFCTHDLESLVAITGAYAGTGIQYVIPAFLVYLCRKDTQLTFGYGTVNKHRSPFRHTFWVAFVLLWAFSCFFFVTAYIVLKETQL", "length": 496 }, "evidence": [ { "id": "A0A287ATA1", "url": "https://omabrowser.org/oma/group/A0A287ATA1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54S12-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "tmem104", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAGGPSDGSTYSKKTAFVYIFNLIVGVGALALPYGFSKAGLVLGLLFLAAIGFLAFITATWLIEGLSIANFILVNKKEERIIGDDDNENYQKPPTENDSLINSEYSDNKILQSNAEDRNLLEPSGGSSSSDNEQFEIKKRVEVGEMSKMFLGNIGYKVFYGVLIIYLFGDLSIYAATVPTTLANVTGGWGKFTDHTVYYFYLFLFACFVGPFSLFNFQKTKYLQFATLITRNVAFLLMIILSIIFIAQGNGASIKQVPIFEISELASIFGVSIYSFMTHHSIPGFLTPISKKDRLFTLMGLDFILVFIAYGTLCVVSLFAFGAVTNPTCATASTSIHTFIPCQIQSLYIYNFTSYNSKFVSDFLSLFPVFTLSTNYILISITLRNNLLQLITWKQDKISSKVRNVVFSLTSSLIPVGVAFCTRNVSLLVNITGSYAGLGIMFVMPALISFYSNKILIEQYHISNPKKSPFSNKFFYLLILLISVICLILATWKIIITYK", "length": 499 }, "evidence": [ { "id": "A0A287ATA1", "url": "https://omabrowser.org/oma/group/A0A287ATA1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NE00-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "SLC38A12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGEITETGELYSSYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFLGFMSFVTTTFVIEAMAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPILSVQRRGSPNPFEITDRVEMGQMASMFFNKVGVNLFYFCIIVYLYGDLAIYAAAVPFSLMQVTCSATGNDSCGVEADTKYNDTDRCWGPLRRVDAYRIYLAIFTLLLGPFTFFDVQKTKYLQILTSLMRWIAFAVMIVLALIRIGHGQGEGHPPLADFSGVRNLFGVCVYSFMCQHSLPSLITPVSSKRHLTRLVFLDYVLILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPVLVAFCTHDLESLVGITGAYAGTGIQYVIPAFLVYHCRRDTQLAFGCGVSNKHRSPFRHTFWVGFVLLWAFSCFIFVTANIILSETKL", "length": 496 }, "evidence": [ { "id": "A0A287ATA1", "url": "https://omabrowser.org/oma/group/A0A287ATA1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VPF8-1", "protein_name": "Putative sodium-coupled neutral amino acid transporter 12", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPRLVNGREAAPTYSNLVGFIFIFNLIVGTGALTLPGVFARAGWMLSLIVIVLLAIISYMTVTFIIEAMACANAIRNWQTLQALRQSRSSAENSENDDNADDVSLASGAEQVGDFERVPLTIQNREFHYYQLSHKFELGEMATLFFNEFGRVMFYLCLIVYLYGDLSIYSAAVARSLRDVVCDQTNGTDTNNLMYWPGDFENNTSLACWKEHTISRLNMYRVLLIGFTLIFGPFVYFNVQKTKYLQMLTAAFRWMAFTLMICISLKLLISRGAKGHPATFNVYGIPSLFGACVYSFMCHHSLPSLLAPIRHKSMVSKILSIDYIIICAFYILLAMTGIFAFERIEDLYTLDFLPYDVAYVDFWSGLLICIDYFLALFPIFTLSTSFPIVAITLKNNLQSLFLDMSQYESYSVILRLCFPLLAIIPPFCITYFTESLSSLVAFTGTYAGTGIQYIIPVFLVYFARRTCSELLGSGVVNRFKSPFKSSAWLVFVFIWSILCVCLVSINLFS", "length": 509 }, "evidence": [ { "id": "A0A287ATA1", "url": "https://omabrowser.org/oma/group/A0A287ATA1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATA1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 180, "end_pos": 182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287ATA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA1" }, { "id": "PF01490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amino acid transporter transmembrane", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 66, "start_aa": "Tyr", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 180, "end_pos": 182 }, { "start_pos": 192, "end_pos": 194 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ATA5-1", "uniprot_ac": "A0A287ATA5", "uniprot_id": "A0A287ATA5_PIG", "mass": { "chemical_mass": 9305.0, "monoisotopic_mass": 9305.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A287ATA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ATA5", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA5", "locus": {} } ], "crossref": [ { "id": "A0A287ATA5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ATA5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031330", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031330", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029367", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029367", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR34446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34446:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34446:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15118", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15118", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ATA5", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ATA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATTMTPSSLALRGLTQVMAPSLYGIFCKCPSCTLPTFFELAWQQCMNFLYFYIVDSVVLNICLQAALSAHSPSPQLPLPPKCW", "length": 84, "header": "tr|A0A287ATA5-1|A0A287ATA5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287ATA5-1" }, "isoforms": [ { "isoform_ac": "A0A287ATA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA5/entry#A0A287ATA5-1", "sequence": { "sequence": "MATTMTPSSLALRGLTQVMAPSLYGIFCKCPSCTLPTFFELAWQQCMNFLYFYIVDSVVLNICLQAALSAHSPSPQLPLPPKCW", "length": 84, "header": "tr|A0A287ATA5-1|A0A287ATA5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287ATA5-1" }, "locus": { "chromosome": "6", "start_pos": 107643099, "end_pos": 107642711, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047475.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047475.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047179.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047179.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATA5", "url": "https://www.uniprot.org/uniprotkb/A0A287ATA5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ATA5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 84, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": 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CANONICAL=A0A287ATB5-1" }, "locus": { "chromosome": "6", "start_pos": 43542882, "end_pos": 43532312, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049953.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049953.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058684.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058684.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron 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"end_pos": 4336043, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040268.2", "url": "https://www.ensembl.org/id/ENSSSCT00000040268.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047102.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047102.1" } ] } }, { "isoform_ac": "A0A5G2QLP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATB8/entry#A0A5G2QLP5-1", "sequence": { "sequence": "SLFPVPTVILGLFIQSWYFLGFFLLLLLEAAPAKNISKRALHVRLAERSRAEEAGGLRQPRADRCPPPPRSLPPGACQATRCQADSECPRHRRCCYNGCAYACLEAVPPPPVLDWLVQPKPRWLGGNGWLLDGPEETLQAEACSTTEDGAEPLLCPSGYECHILSPGDMAEGIPNRGQCVKQRRPADGRFLRHKFYKEYPEGASKNVAEHGKGQQRHFQ", "length": 219, "header": "tr|A0A5G2QLP5-1|A0A287ATB8_PIG Computationally mapped isoform of WAP four-disulfide core domain protein 1 OS=Sus scrofa OX=9823 GN=WFDC1 PE=4 SV=1 CANONICAL=A0A287ATB8-1" }, "locus": { "chromosome": "6", "start_pos": 4399177, "end_pos": 4336043, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070744.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070744.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065491.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065491.1" } ] } }, { "isoform_ac": "I3LQ86-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATB8/entry#I3LQ86-1", "sequence": { "sequence": "CTLQLPTSRTYPAARGPLASDRLGGNAFDQPQDPAKNISKRALHVRLAERSRAEEAGGLRQPRADRCPPPPRSLPPGACQATRCQADSECPRHRRCCYNGCAYACLEAVPPPPVLDWLVQPKPRWLGGNGWLLDGPEETLQAEACSTTEDGAEPLLCPSGYECHILSPGDMAEGIPNRGQCVKQRRPADGRFLRHKFYKEYPEGASKNVAEHGKGQQRHFQ", "length": 221, "header": "tr|I3LQ86-1|A0A287ATB8_PIG Computationally mapped isoform of WAP four-disulfide core domain protein 1 OS=Sus scrofa OX=9823 GN=WFDC1 PE=4 SV=2 CANONICAL=A0A287ATB8-1" }, "locus": { "chromosome": "6", "start_pos": 4365035, "end_pos": 4336043, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026718.3", "url": "https://www.ensembl.org/id/ENSSSCT00000026718.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026264.2", "url": "https://www.ensembl.org/id/ENSSSCP00000026264.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLP5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8M1NF77-1", "protein_name": "WAP four-disulfide core domain protein 1", "gene_name": "wfdc1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSGIMQGCQMWTGFVPVLLISFFLLLESGSGNSRMIRKRGLNQKDYEYPNHPQTPQHQKNDRCPPPPQMLPERACEVPGCRSDSECERHKRCCYNGCIYACLESVQPPPVLDWLVQPKPRWLGGNGWLLDGPEEVLQAEACSTTEDGDEPLLCPTGYECHIINPGNPSAGIPNRGQCIKQRGNSDGRSLRHKSFKDYKDYTGSNSNNAVNYEKHQHKHLG", "length": 220 }, "evidence": [ { "id": "A0A287ATB8", "url": "https://omabrowser.org/oma/group/A0A287ATB8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AAA9U1C5-1", "protein_name": "WAP four-disulfide core domain protein 1", "gene_name": "WFDC1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9ESH5-1", "protein_name": "WAP four-disulfide core domain protein 1", "gene_name": "Wfdc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGNCGRKVLRALSFLLLLGSSSAQGTWEAMLPARLAEKSRAEEVAATGSRQPHADRCPPPPRTLPPGACQATRCQADSECPRHRRCCYNGCAYACLEAVPPPPVLDWLVQPKPRWLGGNGWLLDGPEEVLQAETCSTTEDGAEPLLCPSGYECHILQPGDEAQGIPNHGQCVKQRRQAEGRVLRQRLHKEYPEGDSKNVAEPGKGQQRHFP", "length": 211 }, "evidence": [ { "id": "A0A287ATB8", "url": "https://omabrowser.org/oma/group/A0A287ATB8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HC57-1", "protein_name": "WAP four-disulfide core domain protein 1", "gene_name": "WFDC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"MPLFGWMKWPKNDSYKSSRYPGSELVTKTLLRELKWHLKERERLVQEIENEQKVQKSGMDYNWLKNYQNPQATIPATEQRQLEVLCSQIQPCQTGTVLSRFREVLAENDVLPWEIVYIFKQVLKDFLTTIEKENQQEQLVNMWNTNCSEHFSLRGDSSNRSEKEEIPTVSSYVDKNTQSMFPTFSDRIWNLPYYYPST", "length": 198 }, "evidence": [ { "id": "A0A287ATE1", "url": "https://omabrowser.org/oma/group/A0A287ATE1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287ATG0-1", "uniprot_ac": "A0A287ATG0", "uniprot_id": "A0A287ATG0_PIG", "mass": { "chemical_mass": 41309.0, "monoisotopic_mass": 41309.0 }, "refseq": {}, "gene_names": [ { "name": "TMPPE", "type": "recommended", "evidence": [ { "id": "A0A287ATG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ATG0" } ] } ], "protein_names": [ { "name": "Transmembrane protein with metallophosphoesterase domain", "type": "synonym", "evidence": [ { "id": "A0A287ATG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287ATG0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287ATG0", "url": "https://www.uniprot.org/uniprotkb/A0A287ATG0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMPPE", "url": "https://www.uniprot.org/uniprotkb/A0A287ATG0", "locus": { "chromosome": "13", "start_pos": 18969682, "end_pos": 18978997, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037371", "url": "https://www.ensembl.org/id/ENSSSCG00000037371" } ] } } ], "crossref": [ { "id": "ENSSSCG00000037371", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037371", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07385", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07385", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR004843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DTHYGPI", "url": "https://omabrowser.org/oma/group/DTHYGPI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31302", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31302", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31302:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31302:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00149", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00149", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ATG0", "url": "https://www.uniprot.org/uniprotkb/A0A287ATG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ATG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIFRQLSLGAKAALAAGTVFVSMVVSRSYLAESLELRAWRWLFRLQLALFANSLMLLGSLYIWRSAISNLSQSPAAESTCFQLWKVAVIAFLALAHSSFFTMLFLVAEEPYLFSLAAYSCLGAYIIMVFFLCTLSGMEQAYQLLAWRAGRVVGSLDRTRKLALRPALAVVVTAVLSVVGLLNAAQPPAVKTVDVPIHQLPPTMDNLKIVLLSDIHLGPTVGRTKMEMFVNMVNMLDPDVTVIVGDLCDSEASVLRTAVAPLGQLHSRLGTYFVTGNHEYYTSDVSNWFALLESLNVRPLHNENVKISATRAQGVGGKDDDWICLAGVDDIEADILHYSGHGMDLEKALGGCSPDHATILLAHQPLAAKRACRLGQILT", "length": 379, "header": "tr|A0A287ATG0-1|A0A287ATG0_PIG Isoform 1 of Transmembrane protein with metallophosphoesterase domain OS=Sus scrofa OX=9823 GN=TMPPE PE=4 SV=1 CANONICAL=A0A287ATG0-1" }, "isoforms": [ { "isoform_ac": "A0A287ATG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATG0/entry#A0A287ATG0-1", "sequence": { "sequence": "MAIFRQLSLGAKAALAAGTVFVSMVVSRSYLAESLELRAWRWLFRLQLALFANSLMLLGSLYIWRSAISNLSQSPAAESTCFQLWKVAVIAFLALAHSSFFTMLFLVAEEPYLFSLAAYSCLGAYIIMVFFLCTLSGMEQAYQLLAWRAGRVVGSLDRTRKLALRPALAVVVTAVLSVVGLLNAAQPPAVKTVDVPIHQLPPTMDNLKIVLLSDIHLGPTVGRTKMEMFVNMVNMLDPDVTVIVGDLCDSEASVLRTAVAPLGQLHSRLGTYFVTGNHEYYTSDVSNWFALLESLNVRPLHNENVKISATRAQGVGGKDDDWICLAGVDDIEADILHYSGHGMDLEKALGGCSPDHATILLAHQPLAAKRACRLGQILT", "length": 379, "header": "tr|A0A287ATG0-1|A0A287ATG0_PIG Isoform 1 of Transmembrane protein with metallophosphoesterase domain OS=Sus scrofa OX=9823 GN=TMPPE PE=4 SV=1 CANONICAL=A0A287ATG0-1" }, "locus": { "chromosome": "13", "start_pos": 18976088, "end_pos": 18974952, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067072.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067072.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069096.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069096.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 220, "start_aa": "Thr", "end_pos": 220, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr220", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATG0", "url": "https://www.uniprot.org/uniprotkb/A0A287ATG0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q3AK07-1", "protein_name": "Transmembrane protein with metallophosphoesterase domain", "gene_name": "TMPPE", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MISFKQLPLEAKAAVAAGVVFFSMMLSRSYLAEQLELRMRHWLLRLQMALFANTLMLIGSLHVWKSTVTMFSRSSAASSFFFMLWKIAVFTFLALAHSSFFTLLFLVAEEPYFFSLAAYTCLGAYIILIFFLFALGSVEQAYKFFAGRGVKANSSGKSSRTAMKPVLAVMMTAVLTVIGLLNASQPPTVNRVEIPVHKLPSTMNNLKVVLLSDIHLGPTVGKTKLAMIVRMVKALKPDITVIVGDLTDSEAQIIRPAVEPLGELNSPLGTYFVTGNHEYYTSDVSNWFELLKSFNIQPLHNENVKIVSPESTDDWFCLAGVDDIEADVLRYSGHGMDLKKALRGCSSERAIVLLAHQPMAAKWALQERPEINLILSGHTHGGQMFPLNAGAYFLNPFFVGLYKVGQNTFVYVSPGTMYFGIPMRLGSRAEITEIILRAP", "length": 439 }, "evidence": [ { "id": "A0A287ATG0", "url": "https://omabrowser.org/oma/group/A0A287ATG0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8I6A1H4-1", "protein_name": "Transmembrane protein with metallophosphoesterase domain", "gene_name": "Tmppe", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALFRQLSLGSKAALAAATVFVSMILSRSFLAEALELQAWRWLFRLQLALFVNSILLIGSSYIWRSTVSNLSHPPAVESTCFQLWKLVVMTFLALAHSSFFTMLFLVAEEPYLFSLAAYSCLGAYIIMVFFLCILNAMEQAYQFLAWRSGRVVGSPNKTRHLVLRPALAVAVTAVLSTIGLLNAAQPPLVKTVEVPIHQLPPSMNNLKIALLSDIHLGPTVGRTKMEMFVRMVNRLEPDITVIVGDLSDSEASILRTAVAPLGQLRSRLGNYFVTGNHEYYTSDVSNWFTLLESLHVRPLHNENVKISSASGDPDSGGGEREWVCLAGVDDIEADILHYSGHGMDLDKALEGCSPEHATILLAHQPLAAKRALQARPDINLILSGHTHAGQIFPWNVAAYLLNPFFAGLYQVGKATFVYVSPGTAYYGIPMRLGSRAEITELILWRAS", "length": 448 }, "evidence": [ { "id": "A0A287ATG0", "url": "https://omabrowser.org/oma/group/A0A287ATG0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z286-1", "protein_name": "Transmembrane protein with metallophosphoesterase domain", "gene_name": "Tmppe", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTLFRQLSLGSKAALAAATVFLSMILSRSFLAETLELQAWRWLFRLQLILFVNSIMLIGSSYIWRSTVSNLSHSPAVESTCFQIWKLAVMAFLALAHSSFFTMLFLVAEEPYMFSLTAYSCLGAYIIMVFFLCILNAMEQAYQFLAWRSGRVVGSLDKTRHLVLRPALAVAVTAVLSTIGLLNAAQPPVVKTVEVPIHQLPASMDNLKIVLLSDIHLGPTVGRTKMEMFVRMVNRLEPDITVIVGDLSDSEASVLRTAVAPLGQLHSRLGTYFVTGNHEYYTSDVSNWFTLLESLHVRPLHNENVKISAPGDPDSAGRDREWVCLAGVDDIEADILHYSGHGMDLDKALEGCSPDDATILLAHQPLAAKRALQARPDINLILSGHTHAGQIFPWNVGAYLLNPFFAGLYQVGKATFVYVSPGTAYYGIPMRLGSRAEITELILWRPS", "length": 447 }, "evidence": [ { "id": "A0A287ATG0", "url": "https://omabrowser.org/oma/group/A0A287ATG0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3H2P2-1", "protein_name": "Transmembrane protein with metallophosphoesterase domain", "gene_name": "Tmppe", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MALFRQLSLGSKAALAAATVFVSMILSRSFLAETLELQAWRWLFRLQLVLFVNSLMLIGSLYIWRSTVSNLSHSPVVESTCFQLWKLVVTAFLALAHSSFFTMLFLVAEEPYVFSLAAYSCLGAYIIMVFFLCILNAMEQAYQFLAWRSGRVVGSLDKTRHLVLRPALAVAVTAVLSTIGLLNAAQPPVVKTVEVPIPQLPASMNNLRIVLLSDIHLGPTVGRTKMEMFVRMVNTLEPDITVIVGDLSDSEASILQTAVAPLGHLRSRLGTYFVTGNHEYYTSDVSNWFTLLESLHVRPLHNENVKISAPGDQDSGGAGKEWVCLAGVDDIEADILHYSGHGMDLDKALEGCSPDDTTILLAHQPLAAKRALQARPDINLILSGHTHAGQIFPWNVAAYLLNPFFAGLYQVGRATFVYVSPGTAYYGIPMRLGSRAEITELILWRAP", "length": 447 }, "evidence": [ { "id": "A0A287ATG0", "url": "https://omabrowser.org/oma/group/A0A287ATG0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6ZT21-1", "protein_name": "Transmembrane protein with metallophosphoesterase domain", "gene_name": "TMPPE", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAIFRQLSLGAKATLAAVTVFVSMIASRSYLAESLELRAWRWLLRLQLALFVNSLLLIGSLYIWRSTVSNLCHSPAAESTCFQLWKVVVLAFLALAHSSFFTMFFLVAEEPYLFSLAAYSCLGAYIIMLFFLFILSGMEQAYQLLAWRSGRVVGSLEKTRKLVLRPALAVGVTAVLSVAGILNAAQPPAVKTVEVPIHQLPASMNNLKIVLLSDIHLGPTVGRTKMEMFVRMVNVLEPDITVIVGDLSDSEASVLRTAVAPLGQLHSHLGAYFVTGNHEYYTSDVSNWFALLESLHVQPLHNENVKISATRAQRGGGGSGSGSEDEDWICLAGVDDIEADILHYSGHGMDLDKALEGCSPDHTIILLAHQPLAAKRALQARPDINLILSGHTHAGQIFPLNVAAYLLNPFFAGLYQVAQATFVYVSPGTAYYGIPMRLGSRAEITELILQRSP", "length": 453 }, "evidence": [ { "id": "A0A287ATG0", "url": "https://omabrowser.org/oma/group/A0A287ATG0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATG0", "url": "https://www.uniprot.org/uniprotkb/A0A287ATG0" } ], "pmid": "" } ] } ] }, "pro_annotation": 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{ "uniprot_canonical_ac": "F6R435-1", "protein_name": "Ankyrin repeat and BTB domain containing 1", "gene_name": "ABTB1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDTCDLFSSCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVLYLLAHGPPSRVSRELENLAVPELPREVCPSTPAGARCEANTFDGERCLYGAQSDAIRRALRDYRQVTASFWRRDLYYSFLLRLLEQGLHSDVVFVVHGRAFRAHRGVLGARSTYFAHMLDTKWKGRSAVVLRHPLINPVAFGALLQYLYTGCLDVGVEHVSDCERLARQCQLWGLLGGLEAKQASKPGVCMKVLTIEPPQADLQLREDLALLADCALPPELRGDLGELPFPCDGLSSCPDVCFRVGGYDFLCHKAFFCGRSEYFRALLDDHFQESEQLEASGGLPAVTLHSVSPEVFTHVLYYVYSDHTELPPELAYDVLSVADMYLLPGLKQLCGRSLAQLLDEDSVVGVWRVAKLFGLARLEDQCTKYMARVIEKLVQQEDFVEAVREEAAAVAGRQETDSIPLVDDIRFHMGSLVQTCHAMEQAAQRLRVLEELLVSIGLDC", "length": 498 }, "evidence": [ { "id": "A0A287AU56", "url": "https://omabrowser.org/oma/group/A0A287AU56/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3H7V7-1", "protein_name": "Ankyrin repeat and BTB/POZ domain-containing protein 1", "gene_name": "Abtb1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDTSDLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVRYLLANGARCEANTFDGERCLYGALSDPIRRALRDYKQVTASCRRRDYYDDFLQRLLEQGIHSDVVFVVHGKPFRAHRCVLGARSTYFANMLDTKWKGKSVVVLRHPLINPVAFGALLQYLYTGRLDIGVEHVSDCERLAKQCQLWDLLEDLEAKCEKVSEFVASKPGTCVKVLTIEPPPADPRLREDMALLADCALPPELRGDLGELPFPCPDGFSSCPDICFRVADSSFLCHKAFFCGRSDYFRALLDDHFRESEEPAASGDPPVVTLHDISPDIFTHVLYYVYSDHTELPPELAYDVLSVADMYLLPGLKRLCGRILAQLLEEDSVVGVWRIAKMFRLARLEDQCTEYMAKVIEKLVEREDFVEAVREEAAAVAARQETDSIPLVDDIRFHVASTVQTYSAIEEAQQRLRALEDLLVSIGLDC", "length": 478 }, "evidence": [ { "id": "A0A287AU56", "url": "https://omabrowser.org/oma/group/A0A287AU56/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P40560-1", "protein_name": "Ankyrin repeat-containing protein YIL001W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": 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"MDTSDLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVRYLLANGARCEANTFDGERCLYGALSDPIRRALRDYKQVTASCRRRDYYDDFLQRLLEQGIHSDVVFVVHGKPFRAHRCILGARSTYFANMLDTKWKGKSVVVLRHPLINPVAFGALLQYLYTGRLDIGVEHVSDCERLAKQCQLWDLLDDLEAKCEKVSEFVASKPGTCVKVLTIEPPPADPRLRADMALLADCALPPELRGDLGELPFPCPDGFSSCPDICFRVADSSFLCHKAFFCGRSDYFRALLDDHFRESEEPVASGDPPVVTLHDISPDIFTHVLYYVYSDHTELPPELAYDVLSVADMYLLPGLKRLCGRSLAQLLEEDSVVGVWRIAKLFRLARLEDQCTEYMAKVIEKLVEREDFVEAVREEAAAVAARQETDSIPLVDDIRFHVASTVQTYSAIEEAQQQLRALENLLVSIGLDC", "length": 478 }, "evidence": [ { "id": "A0A287AU56", "url": "https://omabrowser.org/oma/group/A0A287AU56/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q969K4-1", "protein_name": "Ankyrin repeat and BTB/POZ domain-containing protein 1", "gene_name": "ABTB1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"evidence": [ { "id": "A0A287AU64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AU64/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AU64", "url": "https://www.uniprot.org/uniprotkb/A0A287AU64" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SRSF12", "url": "https://www.uniprot.org/uniprotkb/A0A287AU64", "locus": { "chromosome": "1", "start_pos": 57148582, "end_pos": 57165689, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032781", "url": "https://www.ensembl.org/id/ENSSSCG00000032781" } ] } } ], "crossref": [ { "id": "A0A287AU64", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AU64", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032781", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032781", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12312", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12312", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48034", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48034", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72163", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72203", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72203", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9770562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AU64", "url": "https://www.uniprot.org/uniprotkb/A0A287AU64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AU64-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AU64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRYTRPPNTSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYLVIFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRCSYSQSKSRSKSLPRRSTSARQSRTPRRNSGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKAQTAKHSHFRSHSRSRSYRHKNSW", "length": 262, "header": "tr|A0A287AU64-1|A0A287AU64_PIG Isoform 1 of Serine and arginine rich splicing factor 12 OS=Sus scrofa OX=9823 GN=SRSF12 PE=1 SV=2 CANONICAL=A0A287AU64-1" }, "isoforms": [ { "isoform_ac": "A0A287AU64-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AU64/entry#A0A287AU64-1", "sequence": { "sequence": "MSRYTRPPNTSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYLVIFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRCSYSQSKSRSKSLPRRSTSARQSRTPRRNSGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKSPKGYTNSETKAQTAKHSHFRSHSRSRSYRHKNSW", "length": 262, "header": "tr|A0A287AU64-1|A0A287AU64_PIG Isoform 1 of Serine and arginine rich splicing factor 12 OS=Sus scrofa OX=9823 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More details and caveats of the event inference in Reactome. 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"database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTKKKRENLGVALEIDGLEEKLSQCRRELEAVNSRLYGAELSPEARRSLEKEKSSLMSKASNYEKELKLLRQENRKNMLLSVVIFILLTFLYAYWTT", "length": 97, "header": "tr|A0A287AUD4-1|A0A287AUD4_PIG Isoform 1 of Coiled-coil domain-containing protein 167 OS=Sus scrofa OX=9823 GN=CCDC167 PE=4 SV=1 CANONICAL=A0A287AUD4-1" }, "isoforms": [ { "isoform_ac": "A0A287AUD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUD4/entry#A0A287AUD4-1", "sequence": { "sequence": "MTKKKRENLGVALEIDGLEEKLSQCRRELEAVNSRLYGAELSPEARRSLEKEKSSLMSKASNYEKELKLLRQENRKNMLLSVVIFILLTFLYAYWTT", "length": 97, "header": "tr|A0A287AUD4-1|A0A287AUD4_PIG Isoform 1 of Coiled-coil domain-containing protein 167 OS=Sus scrofa OX=9823 GN=CCDC167 PE=4 SV=1 CANONICAL=A0A287AUD4-1" }, "locus": { "chromosome": "7", "start_pos": 33085714, "end_pos": 33065199, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068549.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068549.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062935.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062935.2" } ] } }, { "isoform_ac": "A0A5G2RJC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUD4/entry#A0A5G2RJC6-1", "sequence": { "sequence": "MGGTGACPLIDGLEEKLSQCRRELEAVNSRLYGAELSPEARRSLEKEKSSLMSKASNYEKELKLLRQENRKNMLLSVVIFILLTFLYAYWTT", "length": 92, "header": "tr|A0A5G2RJC6-1|A0A287AUD4_PIG Computationally mapped isoform of Coiled-coil domain-containing protein 167 OS=Sus scrofa OX=9823 GN=CCDC167 PE=4 SV=1 CANONICAL=A0A287AUD4-1" }, "locus": { "chromosome": "7", "start_pos": 33077679, "end_pos": 33065199, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088550.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088550.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071924.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071924.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RJC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJC6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152857", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152857", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7IER4-1", "protein_name": "Coiled-coil domain-containing protein 167", "gene_name": "Ccdc167", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTKKKRENLGVAQEIDGLEEKLSQCRKDLEAVTSQLYRTELSPEDRRSLEKEKTTLMSKASKYEKELKLLRQENRKNMLLSVAIFILLALLYAHWTM", "length": 97 }, "evidence": [ { "id": "A0A287AUD4", "url": "https://omabrowser.org/oma/group/A0A287AUD4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0ZL03-1", "protein_name": "Coiled-coil domain-containing protein 167", "gene_name": "CCDC167", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRRLLGEGFSSLPPPLRLALISSMRVRRRKPHYLTLLDVNIDELEEKLSLCRQSMEEVDLKLRGEKLSHEGRKSLERERNLLMTKADNYEKELSVLRKENRKNAALAVAMVLLIALIYTCWTM", "length": 123 }, "evidence": [ { "id": "A0A287AUD4", "url": 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"ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AUD4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 97, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AUD4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AUD4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"uniprot_canonical_ac": "A0A287AUE2-1", "uniprot_ac": "A0A287AUE2", "uniprot_id": "A0A287AUE2_PIG", "mass": { "chemical_mass": 197349.0, "monoisotopic_mass": 197349.0 }, "refseq": {}, "gene_names": [ { "name": "CRYBG2", "type": "recommended", "evidence": [ { "id": "A0A287AUE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE2" } ] } ], "protein_names": [ { "name": "Crystallin beta-gamma domain containing 2", "type": "synonym", "evidence": [ { "id": "A0A287AUE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Crystallins are the dominant structural components of the vertebrate eye lens.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FIP8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIP8#function" }, { "database": "UniProtKB", "id": "ARBA00003689", "url": "https://www.uniprot.org/uniprotkb/ARBA00003689#function" }, { "database": "UniProtKB", "id": 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"id": "A0A287AUE2", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AUE2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033539", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033539", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23465", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23465", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050252", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050252", "database": "InterPro", "categories": [ 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"https://www.uniprot.org/uniprotkb/A0A287BE96-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG51", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG51-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG51-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIP8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIP8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "GISGWEGPGEVAARSLEAWGGQRPWHLRQECPRTWRVRGAQRAGEKCCHLVSAFPQAQAQSGSEWDLWAGSRPWLWKRGHSSGGSAEPLGRLQRPAVGSASDLANYASAGPESLAMAVTSAEPARARCPSCPLPSPGHSEQGSPGCACLQPAYVAPEVPRRPEPPSNLEDTLPRPASFPRAEGTKGKPASLGPALPETAQTLLKRPSARRTRYHITVTLQGRGQAPGEESEEPKPAQPALHPCGPEESKGWQEPPEGPRPITGCLTDLPQEPRLRAPPHQGSTAQRQELQTGQTPGSPQRRELDHGEPRTPQDRWSGPNMEEAGGPPAQAKARVVSATLTWRQRPPAQEEIKHHFHKVSLVSGAPLEAPQEEMFENSHHREEVNGFAAREVGTMSQQGPWDGAGAKSFQSHGPIFSKKYTLPRKEKRPVGRPKEAVGQGDGSPLDPRTEPPGSGAMAKTEFLVPVHGPREPSPHPGVNIISESPPNPEERRVTRTVRTTVMLGGHVDRRVNYSVTSSGGPTLSGEALRRGRTVARTVRAVVLSPQAEGSPSRSQALELLSSLVPAERSLPASRLPRPIVPRSPGPGSTEGAALGQLPDMGTAEPKDRSSLVPAGIPEDAHPPQNQDVPAAHPDQDQDRALDARVHELPTVQRAPSPTQLPPQTSQGQASVPSSPRLQNHNPPSLDRVHPPEQPELPTHPRAQLTLEPREPQVLPSVKREELPDPPAAPILPMAKTEVVIVPGQSLAPPPTKKAVTSLDDLSAPSSPRNKVVQNSGNVPNFSLPQKEVVQDSSAPAASSSKRTKVVQDPAGSPSTPKEVVLGIGGSSAPPLTKEEAVEGLTAPAIPSPKQDEVVWVPEGSRISFPTQKEVVQGPGAPAVPSSTQKVVVQGPTVPLGPSSSVGKVSLSPEGPPAPVLMRPEASRESQHVPDSAKGKTFLEPSREEEEVALTADLEIFLDTLRSMEPPEILRTHRLPRAPRSSYLAMYATLPAIEEDQPGPWMPGPSPQEGEEEEEEPENPYLSDDEKLQRRQEKVSYSPLEMMKKHVAGAKGPYSELGPERHASSRPTSRLGGSLLFGGLVPAPKEAPALEPLGTKLSALPPHGAPGLRKVPGQLPLLYSEKSPPEKPAHAQPPEGWSPALKTQSKPNTRPGKMILFSEPGCQGSSREVWGDTADASIRGWAPVNMAETPSATRRPLPGRKLVLPEGDVELRAPGPAWSPQGIGSLRRVVRDYIIPEISLYSEEGLKGEQVRLTKALEDPQGLEKPLQVASATVSAGLWLLYPKPFFEDTPCILEPGEYPNSEAWGASDPSVGSLKPMRLGCPSVEKPGEPKAVVYEAPDFQGQSWEVSRDIYNLQQPEDSQSPNLASVGSLRVLGGCWVGYEKEGFRGHQYLLEEGEYADWSHWGGYNEVLTSLRVIRTDFGDPAVVLFEAMDFEGQGVEVSESLPDVELAGHGPRTQAIHVLSGVWVAYQEVGFSGEQYVLEKGVYRNCDDWGSGNSALASLQPVLQVGEHNLHFVSKIQLFSGPDFLGDHISFEDDQTSLPSSFQPQSCRVHGGSWILFDEKNFEGEQHILSEGEFPTLTAMGCLASTVLGSLRKVPLHFSEPSIFLYGLECFEGKEIELRREVRSLQAEGFNNHVLSVRIKGGVWVLCEHSDFRGRQWLVGSCEITNWLTYSGTQRVGSLYPIKQRRAYFRLWNAALGGFLAVPDHVEDMKAGRVVVSEPRAGGSCIWYYEDGLLKNQVAPTMSLQVIGPPSTGSKVVLWAESRLPRQMWSISESGHICSQMFEGRILDVKGGRGYDRDHAVLWEPAKDRATQIWTVHVL", "length": 1822, "header": "tr|A0A287AUE2-1|A0A287AUE2_PIG Isoform 1 of Crystallin beta-gamma domain containing 2 OS=Sus scrofa OX=9823 GN=CRYBG2 PE=3 SV=3 CANONICAL=A0A287AUE2-1" }, "isoforms": [ { "isoform_ac": "A0A287AUE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE2/entry#A0A287AUE2-1", "sequence": { "sequence": "GISGWEGPGEVAARSLEAWGGQRPWHLRQECPRTWRVRGAQRAGEKCCHLVSAFPQAQAQSGSEWDLWAGSRPWLWKRGHSSGGSAEPLGRLQRPAVGSASDLANYASAGPESLAMAVTSAEPARARCPSCPLPSPGHSEQGSPGCACLQPAYVAPEVPRRPEPPSNLEDTLPRPASFPRAEGTKGKPASLGPALPETAQTLLKRPSARRTRYHITVTLQGRGQAPGEESEEPKPAQPALHPCGPEESKGWQEPPEGPRPITGCLTDLPQEPRLRAPPHQGSTAQRQELQTGQTPGSPQRRELDHGEPRTPQDRWSGPNMEEAGGPPAQAKARVVSATLTWRQRPPAQEEIKHHFHKVSLVSGAPLEAPQEEMFENSHHREEVNGFAAREVGTMSQQGPWDGAGAKSFQSHGPIFSKKYTLPRKEKRPVGRPKEAVGQGDGSPLDPRTEPPGSGAMAKTEFLVPVHGPREPSPHPGVNIISESPPNPEERRVTRTVRTTVMLGGHVDRRVNYSVTSSGGPTLSGEALRRGRTVARTVRAVVLSPQAEGSPSRSQALELLSSLVPAERSLPASRLPRPIVPRSPGPGSTEGAALGQLPDMGTAEPKDRSSLVPAGIPEDAHPPQNQDVPAAHPDQDQDRALDARVHELPTVQRAPSPTQLPPQTSQGQASVPSSPRLQNHNPPSLDRVHPPEQPELPTHPRAQLTLEPREPQVLPSVKREELPDPPAAPILPMAKTEVVIVPGQSLAPPPTKKAVTSLDDLSAPSSPRNKVVQNSGNVPNFSLPQKEVVQDSSAPAASSSKRTKVVQDPAGSPSTPKEVVLGIGGSSAPPLTKEEAVEGLTAPAIPSPKQDEVVWVPEGSRISFPTQKEVVQGPGAPAVPSSTQKVVVQGPTVPLGPSSSVGKVSLSPEGPPAPVLMRPEASRESQHVPDSAKGKTFLEPSREEEEVALTADLEIFLDTLRSMEPPEILRTHRLPRAPRSSYLAMYATLPAIEEDQPGPWMPGPSPQEGEEEEEEPENPYLSDDEKLQRRQEKVSYSPLEMMKKHVAGAKGPYSELGPERHASSRPTSRLGGSLLFGGLVPAPKEAPALEPLGTKLSALPPHGAPGLRKVPGQLPLLYSEKSPPEKPAHAQPPEGWSPALKTQSKPNTRPGKMILFSEPGCQGSSREVWGDTADASIRGWAPVNMAETPSATRRPLPGRKLVLPEGDVELRAPGPAWSPQGIGSLRRVVRDYIIPEISLYSEEGLKGEQVRLTKALEDPQGLEKPLQVASATVSAGLWLLYPKPFFEDTPCILEPGEYPNSEAWGASDPSVGSLKPMRLGCPSVEKPGEPKAVVYEAPDFQGQSWEVSRDIYNLQQPEDSQSPNLASVGSLRVLGGCWVGYEKEGFRGHQYLLEEGEYADWSHWGGYNEVLTSLRVIRTDFGDPAVVLFEAMDFEGQGVEVSESLPDVELAGHGPRTQAIHVLSGVWVAYQEVGFSGEQYVLEKGVYRNCDDWGSGNSALASLQPVLQVGEHNLHFVSKIQLFSGPDFLGDHISFEDDQTSLPSSFQPQSCRVHGGSWILFDEKNFEGEQHILSEGEFPTLTAMGCLASTVLGSLRKVPLHFSEPSIFLYGLECFEGKEIELRREVRSLQAEGFNNHVLSVRIKGGVWVLCEHSDFRGRQWLVGSCEITNWLTYSGTQRVGSLYPIKQRRAYFRLWNAALGGFLAVPDHVEDMKAGRVVVSEPRAGGSCIWYYEDGLLKNQVAPTMSLQVIGPPSTGSKVVLWAESRLPRQMWSISESGHICSQMFEGRILDVKGGRGYDRDHAVLWEPAKDRATQIWTVHVL", "length": 1822, "header": "tr|A0A287AUE2-1|A0A287AUE2_PIG Isoform 1 of Crystallin beta-gamma domain containing 2 OS=Sus scrofa OX=9823 GN=CRYBG2 PE=3 SV=3 CANONICAL=A0A287AUE2-1" }, "locus": { "chromosome": "6", "start_pos": 83753921, "end_pos": 83727066, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060727.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060727.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047472.3", "url": "https://www.ensembl.org/id/ENSSSCP00000047472.3" } ] } }, { "isoform_ac": "A0A287BE96-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE2/entry#A0A287BE96-1", "sequence": { "sequence": "MEEAGGPPAQAKARVVSATLTWRQRPPAQEEIKHHFHKVSLVSGAPLEAPQEEMFENSHHREEVNGFAAREVGTMSQQGPWDGAGAKSFQSHGPIFSKKYTLPRKEKRPVGRPKEAVGQGDGSPLDPRTEPPGSGAMAKTEFLVPVHGPREPSPHPGVNIISESPPNPEERRVTRTVRTTVMLGGHVDRRVNYSVTSSGGPTLSGEALRRGRTVARTVRAVVLSPQAEGSPSRSQALELLSSLVPAERSLPASRLPRPIVPRSPGPGSTEGAALGQLPDMGTAEPKDRSSLVPAGIPEDAHPPQNQDVPAAHPDQDQDRALDARVHELPTVQRAPSPTQLPPQTSQGQASVPSSPRLQNHNPPSLDRVHPPEQPELPTHPRAQLTLEPREPQVLPSVKREELPDPPAAPILPMAKTEVVIVPGQSLAPPPTKKAVTSLDDLSAPSSPRNKVVQNSGNVPNFSLPQKEVVQDSSAPAASSSKRTKVVQDPAGSPSTPKEVVLGIGGSSAPPLTKEEAVEGLTAPAIPSPKQDEVVWVPEGSRISFPTQKEVVQGPGAPAVPSSTQKVVVQGPTVPLGPSSSVGKVSLSPEGPPAPVLMRPEASRESQHVPDSAKGKTFLEPSREEEEVALTADLEIFLDTLRSMEPPEILRTHRLPRAPRSSYLAMYATLPAIEEDQPGPWMPGPSPQEEEEEPENPYLSDDEKLQRRQEKVSYSPLEMMKKHVAGAKGPYSELGPERHASSRPTSRLGGSLLFGGLVPAPKEAPALEPLGTKLSALPPHGAPGLRKVPGQLPLLYSEKSPPEKPAHAQPPEGWSPALKTQSKPNTRPGKMILFSEPGCQGSSREVWGDTADASSWARVASIRVVRVPGRKLVLPEGDVELRAPGPAWSPQGIGSLRRVVRDYIIPEISLYSEEGLKGEQVRLTKALEDPQGLEKPLQVASATVSAGLWLLYPKPFFEDTPCILEPGEYPNSEAWGASDPSVGSLKPMRLGCPSVEKPGEPKAVVYEAPDFQGQSWEVSRDIYNLQQPEDSQSPNLASVGSLRVLGGCWVGYEKEGFRGHQYLLEEGEYADWSHWGGYNEVLTSLRVIRTDFGDPAVVLFEAMDFEGQGVEVSESLPDVELAGHGPRTQAIHVLSGVWVAYQEVGFSGEQYVLEKGVYRNCDDWGSGNSALASLQPVLQVGEHNLHFVSKIQLFSGPDFLGDHISFEDDQTSLPSSFQPQSCRVHGGSWILFDEKNFEGEQHILSEGEFPTLTAMGCLASTVLGSLRKVPLHFSEPSIFLYGLECFEGKEIELRREVRSLQAEGFNNHVLSVRIKGGVWVLCEHSDFRGRQWLVGSCEITNWLTYSGTQRVGSLYPIKQRRAYFRLWNAALGGFLAVPDHVEDMKAGRVVVSEPRAGGSCIWYYEDGLLKNQVAPTMSLQVIGPPSTGSKVVLWAESRLPRQMWSISESGHICSQMFEGRILDVKGGRGYDRDHAVLWEPAKDRATQIWTVHVL", "length": 1493, "header": "tr|A0A287BE96-1|A0A287BE96_PIG Computationally mapped isoform of Crystallin beta-gamma domain containing 2 OS=Sus scrofa OX=9823 GN=CRYBG2 PE=3 SV=2 CANONICAL=A0A287AUE2-1" }, "locus": { "chromosome": "6", "start_pos": 83746807, "end_pos": 83727066, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064299.2", "url": "https://www.ensembl.org/id/ENSSSCT00000064299.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054651.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054651.2" } ] } }, { "isoform_ac": "A0A8W4FG51-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE2/entry#A0A8W4FG51-1", "sequence": { "sequence": "MGRGELNAKGPFQSSRSLSSSCGPSSLSVGQRCLVSELWSASPVPRRAAWRVRGAQRAGEKCCHLVSAFPQAQAQSGSEWDLWAGSRPWLWKRGHSSGGSAEPLGRLQRPAVGSASDLANYASAGPESLAMAVTSAEPARARCPSCPLPSPGHSEQGSPGCACLQPAYVAPEVPRRPEPPSNLEDTLPRPASFPRAEGTKGKPASLGPALPETAQTLLKRPSARRTRYHITVTLQGRGQAPGEESEEPKPAQPALHPCGPEESKGWQEPPEGPRPITGCLTDLPQEPRLRAPPHQGSTAQRQELQTGQTPGSPWSGPNMEEAGGPPAQAKARVVSATLTWRQRPPAQEEIKHHFHKVSLVSGAPLEAPQEEMFENSHHREEVNGFAAREVGTMSQQGPWDGAGAKSFQSHGPIFSKKYTLPRKEKRPVGRPKEAVGQGDGSPLDPRTEPPGSGAMAKTEFLVPVHGPREPSPHPGVNIISESPPNPEERRVTRTVRTTVMLGGHVDRRVNYSVTSSGGPTLSGEALRRGRTVARTVRAVVLSPQAEGSPSRSQALELLSSLVPAERSLPASRLPRPIVPRSPGPGSTEGAALGQLPDMGTAEPKDRSSLVPAGIPEDAHPPQNQDVPAAHPDQDQDRALDARVHELPTVQRAPSPTQLPPQTSQGQASVPSSPRLQNHNPPSLDRVHPPEQPELPTHPRAQLTLEPREPQVLPSVKREELPDPPAAPILPMAKTEVVIVPGQSLAPPPTKKAVTSLDDLSAPSSPRNKVVQNSGNVPNFSLPQKEVVQDSSAPAASSSKRTKVVQDPAGSPSTPKEVVLGIGGSSAPPLTKEEAVEGLTAPAIPSPKQDEVVWVPEGSRISFPTQKEGPTVPLGPSSSVGKVSLSPEGPPAPVLMRPEASRESQHVPDSAKGKTFLEPSREEEEVALTADLEIFLDTLRSMEPPEILRTHRLPRAPRSSYLAMYATLPAIEEDQPGPWMPGPSPQEGEEEEEEPENPYLSDDEKLQRRQEKAGPSAKGPYSELGPERHASSRPTSRLGGSLLFGGLVPAPKEAPALEPLGTKLSALPPHGAPGLRKVPGQLPLLYSEKSPPEKPAHAQPPEGWSPALKTQSKPNTRPGKMILFSEPGCQGSSREVWGDTADASSWALPRGLVLPEGDVELRAPGPAWSPQGIGSLRRVVRDYIIPEISLYSEEGLKGEQVRLTKALEDPQGLEKPLQVASATVSAGLWLLYPKPFFEDTPCILEPGEYPNSEAWGASDPSVGSLKPMRLGCPSVEKPGEPKAVVYEAPDFQGQSWEVSRDIYNLQQPEDSQSPNLASVGSLRVLGGCWVGYEKEGFRGHQYLLEEGEYADWSHWGGYNEVLTSLRVIRTDFGDPAVVLFEAMDFEGQGVEVSESLPDVELAGHGPRTQAIHVLSGVWVAYQEVGFSGEQYVLEKGVYRNCDDWGSGNSALASLQPVLQVGEHNLHFVSKIQLFSGPDFLGDHISFEDDQTSLPSSFQPQSCRVHGGSWILFDEKNFEGEQHILSEGEFPTLTAMGCLASTVLGSLRKVPLHFSEPSIFLYGLECFEGKEIELRREVRSLQAEGFNNHVLSVRIKGGVWVLCEHSDFRGRQWLVGSCEITNWLTYSGTQRVGSLYPIKQRRAYFRLWNAALGGFLAVPDHVEDMKAGRVVVSEPRAGGSCIWYYEDGLLKNQVAPTMSLQVIGPPSTGSKVVLWAESRLPRQMWSISESGHICSQMFEGRILDVKGGRGYDRDHAVLWEPAKDRATQIWTVHVL", "length": 1773, "header": "tr|A0A8W4FG51-1|A0A287AUE2_PIG Computationally mapped isoform of Crystallin beta-gamma domain containing 2 OS=Sus scrofa OX=9823 GN=CRYBG2 PE=3 SV=1 CANONICAL=A0A287AUE2-1" }, "locus": { "chromosome": "6", "start_pos": 83753673, "end_pos": 83727066, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097258.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097258.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077841.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077841.1" } ] } }, { "isoform_ac": "A0A8W4FIP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUE2/entry#A0A8W4FIP8-1", "sequence": { "sequence": "MAERRWGLGARLARRLPVLGVRRDRKGKRTPEKATSQDRPWGGRSCPDLAQSQGSASNVSLEAQAQSGSEWDLWAGSRPWLWKRGHSSGGSAEPLGRLQRPAVGSASDLANYASAGPESLAMAVTSAEPARARCPSCPLPSPGHSEQGSPGCACLQPAYVAPEVPRRPEPPSNLEDTLPRPASFPRAEGTKGKPASLGPALPETAQTLLKRPSARRTRYHITVTLQGRGQAPGEESEEPKPAQPALHPCGPEESKGWQEPPEGPRPITGCLTDLPQEPRLRAPPHQGSTAQRQELQTGQTPGSPQRRELDHGEPRTPQDRWSGPNMEEAGGPPAQAKARVVSATLTWRQRPPAQEEIKHHFHKVSLVSGAPLEAPQEEMFENSHHREEVNGFAAREVGTMSQQGPWDGAGAKSFQSHGPIFSKKYTLPRKEKRPVGRPKEAVGQGDGSPLDPRTEPPGSGAMAKTEFLVPVHGPREPSPHPGVNIISESPPNPEERRVTRTVRTTVMLGGHVDRRVNYSVTSSGGPTLSGEALRRGRTVARTVRAVVLSPQAEGSPSRSQALELLSSLVPAERSLPASRLPRPIVPRSPGPGSTEGAALGQLPDMGTAEPKDRSSLVPAGIPEDAHPPQNQDVPAAHPDQDQDRALDARVHELPTVQRAPSPTQLPPQTSQGQASVPSSPRLQNHNPPSLDRVHPPEQPELPTHPRAQLTLEPREPQVLPSVKREELPDPPAAPILPMAKTEVVIVPGQSLAPPPTKKAVTSLDDLSAPSSPRNKVVQNSGNVPNFSLPQKEVVQDSSAPAASSSKRTKVVQDPAGSPSTPKEVVLGIGGSSAPPLTKEEAVEGLTAPAIPSPKQDEVVWVPEGSRISFPTQKEVVQGPGGPTVPLGPSSSVGKVSLSPEGPPAPVLMRPEASRESQHVPDSAKGKTFLEPSREEEEVALTADLEIFLDTLRSMEPPEILRTHRLPRAPRSSYLAMYATLPAIEEDQPGPWMPGPSPQEGEEEEEEPENPYLSDDEKLQRRQEKVSYSPLEMMKKHVAGAKGPYSELGPERHASSRPTSRLGGSLLFGGLVPAPKEAPALEPLGTKLSALPPHGAPGLRKVPGQLPLLYSEKSPPEKPAHAQPPEGWSPALKTQSKPNTRPGKMILFSEPGCQGSSREVWGDTADASSWARVASIRVVRGWAVRRAPVNMAETPSATRRPRLDYIIPEISLYSEEGLKGEQVRLTKALEDPQGLEKPLQVASATVSAGLWLLYPKPFFEDTPCILEPGEYPNSEAWGASDPSVGSLKPMRLGCPSVEKPGEPKAVVYEAPDFQGQSWEVSRDIYNLQQPEDSQSPNLASVGSLRVLGGCWVGYEKEGFRGHQYLLEEGEYADWSHWGGYNEVLTSLRVIRTDFGDPAVVLFEAMDFEGQGVEVSESLPDVELAGHGPRTQAIHVLSGVWVAYQEVGFSGEQYVLEKGVYRNCDDWGSGNSALASLQPVLQVGEHNLHFVSKIQLFSGPDFLGDHISFEDDQTSLPSSFQPQSCRVHGGSWILFDEKNFEGEQHILSEGEFPTLTAMGCLASTVLGSLRKVPLHFSEPSIFLYGLECFEGKEIELRREVRSLQAEGFNNHVLSVRIKGGVWVLCEHSDFRGRQWLVGSCEITNWLTYSGTQRVGSLYPIKQRRAYFRLWNAALGGFLAVPDHVEDMKAGRVVVSEPRAGGSCIWYYEDGLLKNQVAPTMSLQVIGPPSTGSKVVLWAESRLPRQMWSISESGHICSQMFEGRILDVKGGRGYDRDHAVLWEPAKDRATQIWTVHVL", "length": 1795, "header": "tr|A0A8W4FIP8-1|A0A287AUE2_PIG Computationally mapped isoform of Crystallin beta-gamma domain containing 2 OS=Sus scrofa OX=9823 GN=CRYBG2 PE=3 SV=1 CANONICAL=A0A287AUE2-1" }, "locus": { "chromosome": "6", "start_pos": 83757430, "end_pos": 83727066, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093557.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093557.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078758.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078758.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1744, "start_aa": "Thr", "end_pos": 1744, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1744", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 891, "start_aa": "Thr", "end_pos": 891, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr891", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., 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"gene_names": [ { "name": "GLOD5", "type": "recommended", "evidence": [ { "id": "A0A287AUR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUR6" } ] } ], "protein_names": [ { "name": "Glyoxalase domain-containing protein 5", "type": "recommended", "evidence": [ { "id": "A0A287AUR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUR6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AUR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUR6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GLOD5", "url": "https://www.uniprot.org/uniprotkb/A0A287AUR6", "locus": { "chromosome": "X", "start_pos": 42889271, "end_pos": 42877140, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031477", "url": "https://www.ensembl.org/id/ENSSSCG00000031477" } ] } } ], "crossref": [ { "id": "A0A287AUR6", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AUR6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031477", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031477", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07253", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07253", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR004360", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004360", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037523", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037523", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21366", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21366", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21366:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21366:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00903", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00903", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AUR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWSRTSEKQPWRDSSQTPFPCLIHRLDHIVMTVKNIKDTTTFYSKILGMEVVTFKGDRKALCFGDQKFNLHEMGKEFEPKAACPVPGSLDICLITEVPLEEVVQHLKACDVPIEEGPVLRTGAKGPIMSIYFRDPDRNLIEVSSYMSS", "length": 148, "header": "tr|A0A287AUR6-1|A0A287AUR6_PIG Isoform 1 of Glyoxalase domain-containing protein 5 OS=Sus scrofa OX=9823 GN=GLOD5 PE=3 SV=2 CANONICAL=A0A287AUR6-1" }, "isoforms": [ { "isoform_ac": "A0A287AUR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUR6/entry#A0A287AUR6-1", "sequence": { "sequence": "MWSRTSEKQPWRDSSQTPFPCLIHRLDHIVMTVKNIKDTTTFYSKILGMEVVTFKGDRKALCFGDQKFNLHEMGKEFEPKAACPVPGSLDICLITEVPLEEVVQHLKACDVPIEEGPVLRTGAKGPIMSIYFRDPDRNLIEVSSYMSS", "length": 148, "header": "tr|A0A287AUR6-1|A0A287AUR6_PIG Isoform 1 of Glyoxalase domain-containing protein 5 OS=Sus scrofa OX=9823 GN=GLOD5 PE=3 SV=2 CANONICAL=A0A287AUR6-1" }, "locus": { "chromosome": "X", "start_pos": 42889001, "end_pos": 42877156, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049200.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049200.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047856.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047856.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUR6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AUR6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 148, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AUR6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AUR6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AUR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUR6" }, { "id": "PS51819", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51819" } ], "ann_type": 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"categories": [ "Protein" ] }, { "id": "A0A287B3E3", "url": "https://www.uniprot.org/uniprotkb/A0A287B3E3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3E3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BM89", "url": "https://www.uniprot.org/uniprotkb/A0A287BM89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BM89-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BM89-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPAGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQRAPRG", "length": 335, "header": "tr|A0A287AUU4-1|A0A287AUU4_PIG Isoform 1 of Single stranded DNA binding protein 2 OS=Sus scrofa OX=9823 GN=SSBP2 PE=4 SV=3 CANONICAL=A0A287AUU4-1" }, "isoforms": [ { "isoform_ac": "A0A287AUU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUU4/entry#A0A287AUU4-1", "sequence": { "sequence": "MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPAGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQRAPRG", "length": 335, "header": "tr|A0A287AUU4-1|A0A287AUU4_PIG Isoform 1 of Single stranded DNA binding protein 2 OS=Sus scrofa OX=9823 GN=SSBP2 PE=4 SV=3 CANONICAL=A0A287AUU4-1" }, "locus": { "chromosome": "2", "start_pos": 90263027, "end_pos": 89961431, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062434.3", "url": 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Classification" ] }, { "id": "PTHR23348", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23348", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23348:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23348:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AUV6", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BB30", "url": "https://www.uniprot.org/uniprotkb/A0A287BB30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BB30-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BB30-1", 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"length": 1366, "header": "tr|A0A287AUV6-1|A0A287AUV6_PIG Isoform 1 of Periaxin OS=Sus scrofa OX=9823 GN=PRX PE=1 SV=2 CANONICAL=A0A287AUV6-1" }, "locus": { "chromosome": "6", "start_pos": 48683446, "end_pos": 48675421, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036911.2", "url": "https://www.ensembl.org/id/ENSSSCT00000036911.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047717.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047717.2" } ] } }, { "isoform_ac": "A0A287BB30-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV6/entry#A0A287BB30-1", "sequence": { "sequence": "MEARSRSAEELRRAELVEIIVETEAQTGVSGINVAGGGKEGIFVRELREDSPAAKSLSLQEGDQLLSARVFFENFKYEDALRLLQCAEPYKVSFCLKRTVPTGDLALRPGTVAGYEIKGPRAKVAKLVRVLSPVPALDGPSDPVSAS", "length": 147, "header": "tr|A0A287BB30-1|A0A287BB30_PIG Computationally mapped isoform of Periaxin OS=Sus scrofa OX=9823 GN=PRX PE=1 SV=2 CANONICAL=A0A287AUV6-1" }, "locus": { "chromosome": "6", "start_pos": 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"id": "A0A8D1VPR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1VPR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPGLLKLGPSGEEEEREQSFSSCWHVFRHSTLIPAALHVTVNPFERSQTFHRRKNCKLAKPQLVTGGESFSRFLQDHCPVVTETYYPTVWCWESRGQTLLRPFITSKPLVQYRNELIKTADGGQISLDWFDNDSSKCYMDASTRPTVLLLPGLTGTSKESYILHMIHLSEELGYRCVVFNNRGVAGENLLTPRTYCCSNTEDLETVIQHVHSLYPSAPFLAAGVSMGGMLLLNYLGKIGPKTPLKAAATFSVGWNTFACSESLEKPLNWLLFNYYLTTCLQSSVNKHRHMFVKLIDMDHVMKAKSIREFDKRFTAVMFGYRTIDDYYTDASPNRRLKSVGIPVLCLNSVDDVFSPSHAIPIETAKQNPNVALVLTSYGGHIGFLEGIWPRQSTYMDRVFKQFVQAMVEHGHELSSM", "length": 417, "header": "tr|A0A287AUZ1-1|A0A287AUZ1_PIG Isoform 1 of Phospholipase ABHD3 OS=Sus scrofa OX=9823 GN=ABHD3 PE=3 SV=2 CANONICAL=A0A287AUZ1-1" }, "isoforms": [ { "isoform_ac": "A0A287AUZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ1/entry#A0A287AUZ1-1", "sequence": { "sequence": "MRPGLLKLGPSGEEEEREQSFSSCWHVFRHSTLIPAALHVTVNPFERSQTFHRRKNCKLAKPQLVTGGESFSRFLQDHCPVVTETYYPTVWCWESRGQTLLRPFITSKPLVQYRNELIKTADGGQISLDWFDNDSSKCYMDASTRPTVLLLPGLTGTSKESYILHMIHLSEELGYRCVVFNNRGVAGENLLTPRTYCCSNTEDLETVIQHVHSLYPSAPFLAAGVSMGGMLLLNYLGKIGPKTPLKAAATFSVGWNTFACSESLEKPLNWLLFNYYLTTCLQSSVNKHRHMFVKLIDMDHVMKAKSIREFDKRFTAVMFGYRTIDDYYTDASPNRRLKSVGIPVLCLNSVDDVFSPSHAIPIETAKQNPNVALVLTSYGGHIGFLEGIWPRQSTYMDRVFKQFVQAMVEHGHELSSM", "length": 417, "header": "tr|A0A287AUZ1-1|A0A287AUZ1_PIG Isoform 1 of Phospholipase ABHD3 OS=Sus scrofa OX=9823 GN=ABHD3 PE=3 SV=2 CANONICAL=A0A287AUZ1-1" }, "locus": { "chromosome": "6", "start_pos": 106917507, "end_pos": 106852312, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061687.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061687.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047680.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047680.2" } ] } }, { "isoform_ac": "A0A8D1VPR7-1", "url": 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} ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1VPR7", "url": "https://www.uniprot.org/uniprotkb/A0A8D1VPR7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1483191", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483191", "resource": "Reactome", "description": "Synthesis of PC" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "monoacylglycerol lipase activity", "id": "GO:0047372", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047372", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ1" } ], "pmid": "" }, { "name": "phospholipase A2 activity", "id": "GO:0004623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004623", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ1" } ], "pmid": "" }, { "name": "phospholipase A1 activity", "id": "GO:0008970", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008970", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ1" } ], "pmid": "" }, { "name": "acetylesterase activity", "id": "GO:0008126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008126", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "phosphatidylcholine metabolic process", "id": "GO:0046470", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046470", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ1" } ], "pmid": "" }, { "name": "medium-chain fatty acid catabolic process", "id": "GO:0051793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051793", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ1" } ], "pmid": "" }, { "name": "medium-chain fatty acid biosynthetic process", "id": "GO:0051792", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051792", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "15801", "name": "", "equation": "a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "15801", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/15801" } ] }, { "id": "18689", "name": "", "equation": "a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 2-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "18689", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/18689" } ] }, { "id": "40479", "name": "", "equation": "1-O-hexadecyl-2-acetyl-sn-glycero-3-phosphocholine + H2O = 1-O-hexadecyl-sn-glycero-3-phosphocholine + acetate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40479", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40479" } ] }, { "id": "40483", "name": "", "equation": "1-hexadecanoyl-2-(5-oxopentanoyl)-sn-glycero-3-phosphocholine + H2O = 5-oxopentanoate + 1-hexadecanoyl-sn-glycero-3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40483", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40483" } ] }, { "id": "41159", "name": "", "equation": "1-hexadecanoyl-2-glutaroyl-sn-glycero-3-phosphocholine + H2O = glutarate + 1-hexadecanoyl-sn-glycero-3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "41159", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41159" } ] }, { "id": "41179", "name": "", "equation": "1-hexadecanoyl-2-(9-oxononanoyl)-sn-glycero-3-phosphocholine + H2O = 9-oxononanoate + 1-hexadecanoyl-sn-glycero-3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "41179", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41179" } ] }, { "id": "41388", "name": "", "equation": "1-hexadecanoyl-2-nonadioyl-sn-glycero-3-phosphocholine + H2O = nonanedioate + 1-hexadecanoyl-sn-glycero-3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "41388", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41388" } ] }, { "id": "54388", "name": "", "equation": "1-tetradecanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphocholine + H2O = 2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphocholine + tetradecanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54388", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54388" } ] }, { "id": "54392", "name": "", "equation": "1-tetradecanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphocholine + H2O = 1-tetradecanoyl-sn-glycero-3-phosphocholine + (9Z,12Z)-octadecadienoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54392", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54392" } ] }, { "id": "54396", "name": "", "equation": "1-tetradecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphocholine + H2O = 2-(5Z,8Z,11Z,14Z)-eicosatetraenoyl-sn-glycero-3-phosphocholine + tetradecanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54396", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54396" } ] }, { "id": "54400", "name": "", "equation": "1-tetradecanoyl-2-(4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoyl)-sn-glycero-3-phosphocholine + H2O = 2-(4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoyl)-sn-glycero-3-phosphocholine + tetradecanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54400", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54400" } ] }, { "id": "54404", "name": "", "equation": "1,2-ditetradecanoyl-sn-glycero-3-phosphocholine + H2O = 2-tetradecanoyl-sn-glycero-3-phosphocholine + tetradecanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54404", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54404" } ] }, { "id": "54408", "name": "", "equation": "1-octadecanoyl-2-acetyl-sn-glycero-3-phosphocholine + H2O = 1-octadecanoyl-sn-glycero-3-phosphocholine + acetate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54408", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54408" } ] }, { "id": "54456", "name": "", "equation": "1,2-ditetradecanoyl-sn-glycero-3-phosphocholine + H2O = 1-tetradecanoyl-sn-glycero-3-phosphocholine + tetradecanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54456", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54456" } ] }, { "id": "54460", "name": "", "equation": "1-octadecanoyl-2-pentanoyl-sn-glycero-3-phosphocholine + H2O = pentanoate + 1-octadecanoyl-sn-glycero-3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54460", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54460" } ] }, { "id": "54464", "name": "", "equation": "1-octadecanoyl-2-hexanoyl-sn-glycero-3-phosphocholine + H2O = hexanoate + 1-octadecanoyl-sn-glycero-3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54464", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54464" } ] }, { "id": "54468", "name": "", "equation": "1-octadecanoyl-2-octanoyl-sn-glycero-3-phosphocholine + H2O = 1-octadecanoyl-sn-glycero-3-phosphocholine + octanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54468", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54468" } ] }, { "id": "54472", "name": "", "equation": "1-octadecanoyl-2-nonanoyl-sn-glycero-3-phosphocholine + H2O = nonanoate + 1-octadecanoyl-sn-glycero-3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54472", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54472" } ] }, { "id": "54552", "name": "", "equation": "1-O-hexadecyl-2-nonadioyl-sn-glycero-3-phosphocholine + H2O = nonanedioate + 1-O-hexadecyl-sn-glycero-3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54552", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54552" } ] }, { "id": "R-SSC-5694485", "name": "ABHD3 hydrolyses LPC(14:0) to 1AGPC", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [ "R-ALL-5694502" ], "output_participant_list": [ "R-ALL-5694457" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5694485", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5694485" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-5694457", "participant_name": "1AGPC [plasma membrane]", "crossref": [ { "id": "1-Acylglycero-Phosphocholines", "database": "RiceCyc", "url": "" }, { "id": "11230", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-5694502", "participant_name": "LPC(14:0) [plasma membrane]", "crossref": [ { "id": "64483", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AUZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ1" }, { "id": "PF00561", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AB hydrolase-1", "eco_id": "ECO_0000259", "start_pos": 146, "end_pos": 387, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 133, "end_pos": 135 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AUZ5-1", "uniprot_ac": "A0A287AUZ5", "uniprot_id": "A0A287AUZ5_PIG", "mass": { "chemical_mass": 40666.0, "monoisotopic_mass": 40666.0 }, "refseq": {}, "gene_names": [ { "name": "ZCWPW2", "type": "recommended", "evidence": [ { "id": "A0A287AUZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ5" } ] } ], "protein_names": [ { "name": "Zinc finger CW-type and PWWP domain containing 2", "type": "synonym", "evidence": [ { "id": "A0A287AUZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZCWPW2", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ5", "locus": { "chromosome": "13", "start_pos": 14926248, "end_pos": 14841319, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038376", "url": "https://www.ensembl.org/id/ENSSSCG00000038376" } ] } } ], "crossref": [ { "id": "A0A287AUZ5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AUZ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038376", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038376", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20146", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20146", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042778", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042778", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15999", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15999", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15999:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15999:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07496", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07496", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AUZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKSDSKIEYCNAAMDSSVENNMYVNKVWVQCENEGCLKWRLLSSEDAAKVDHNEPWYCFMNTNSRYNKCSVSEEDFPEESQLHQSGFKIVYSQLPLGSLVLVKLQNWPSWPGILCPDPFKEKYVSYDLDGDVEQYHIEFLGDPHSRSWINATFVGHYSITLKPGNCKNKKKWYKSALQEAYLLYGYSREQRLEMCYLSKQDKSKADGKVAVVAKKRMQVSKNNAGKKKPKFRKMKRKTILKSSFENVCSDDALSKENMVVSETEILLKELEQMLQQALEPMATPDESEEEHGETAHTGEKLSKCSPEAPAGSSLENHYEEDYLVIDGLKLKAEECIENITNKFKEIDALMSEF", "length": 354, "header": "tr|A0A287AUZ5-1|A0A287AUZ5_PIG Isoform 1 of Zinc finger CW-type and PWWP domain containing 2 OS=Sus scrofa OX=9823 GN=ZCWPW2 PE=4 SV=2 CANONICAL=A0A287AUZ5-1" }, "isoforms": [ { "isoform_ac": "A0A287AUZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ5/entry#A0A287AUZ5-1", "sequence": { "sequence": "MKKSDSKIEYCNAAMDSSVENNMYVNKVWVQCENEGCLKWRLLSSEDAAKVDHNEPWYCFMNTNSRYNKCSVSEEDFPEESQLHQSGFKIVYSQLPLGSLVLVKLQNWPSWPGILCPDPFKEKYVSYDLDGDVEQYHIEFLGDPHSRSWINATFVGHYSITLKPGNCKNKKKWYKSALQEAYLLYGYSREQRLEMCYLSKQDKSKADGKVAVVAKKRMQVSKNNAGKKKPKFRKMKRKTILKSSFENVCSDDALSKENMVVSETEILLKELEQMLQQALEPMATPDESEEEHGETAHTGEKLSKCSPEAPAGSSLENHYEEDYLVIDGLKLKAEECIENITNKFKEIDALMSEF", "length": 354, "header": "tr|A0A287AUZ5-1|A0A287AUZ5_PIG Isoform 1 of Zinc finger CW-type and PWWP domain containing 2 OS=Sus scrofa OX=9823 GN=ZCWPW2 PE=4 SV=2 CANONICAL=A0A287AUZ5-1" }, "locus": { "chromosome": "13", "start_pos": 14925782, "end_pos": 14841319, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064782.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064782.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047931.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047931.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ5" } ], "pmid": "" }, { "name": "histone H3K4me3 reader activity", "id": "GO:0140002", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140002", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 339, "end_pos": 341, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AUZ5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 354, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AUZ5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AUZ5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AUZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ5" }, { "id": "PS51050", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51050" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CW-type", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 78, "start_aa": "Met", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AUZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ5" }, { "id": "PS50812", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50812" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PWWP", "eco_id": "ECO_0000259", "start_pos": 97, "end_pos": 150, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 151, "end_pos": 153 }, { "start_pos": 339, "end_pos": 341 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"XP_020944613", "name": "kelch-like protein 38", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944613" }, "gene_names": [ { "name": "KLHL38", "type": "recommended", "evidence": [ { "id": "A0A287AV69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AV69" } ] }, { "name": "KLHL38", "type": "synonym", "evidence": [ { "id": "XP_020944613", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944613" } ] } ], "protein_names": [ { "name": "Kelch like family member 38", "type": "synonym", "evidence": [ { "id": "A0A287AV69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AV69/entry#names_and_taxonomy" } ] }, { "name": "kelch-like protein 38", "type": "synonym", "evidence": [ { "id": "XP_020944613", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944613" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AV69", "url": "https://www.uniprot.org/uniprotkb/A0A287AV69" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLHL38", "url": "https://www.uniprot.org/uniprotkb/A0A287AV69", "locus": { "chromosome": "4", "start_pos": 15801464, "end_pos": 15792997, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035521", "url": "https://www.ensembl.org/id/ENSSSCG00000035521" } ] } } ], "crossref": [ { "id": "ENSSSCG00000035521", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035521", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18476", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18476", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102160009", "url": "https://www.ncbi.nlm.nih.gov/gene/102160009", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056737", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056737", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102160009", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102160009", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EVALTCF", "url": "https://omabrowser.org/oma/group/EVALTCF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AV69", "url": "https://www.orthodb.org/?gene=A0A287AV69", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24981", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24981", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020944613", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944613", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AV69", "url": "https://www.uniprot.org/uniprotkb/A0A287AV69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AV69-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDEELPDGLLFKDQDFSSDLLRQLNRLRQSRILTDVSICTGPWEAPCHRTVLASSSPYFRAMFCSNFRESREAKVQLKGIDSATLERIILYVYTGEARITAETVLPLMEAASMLQYPKLLEACSSYLQSQLTPGNCLGMVRLSEVFSCEPLRRKAREVALTHFPEVAASADLKELCALELRDYLGDDGLCGEEEKVFEALMVWIKHDLQARKRHVQELFRQVRLQYVHPAFFHHFIANDALLQSSPPCRTILEAARRQMFSLHSTPSAPDLQLLWHVPPRNSYQDFLLLLGGRKDNQQTTRDVLLYDAQSGQWRSLAKLPARLYKASAVTLHRSVYLLGGMAVGAGKSEPSHSVYVFSLKLNQWRPGPPMLAARYSHRSTAHKNFIFAIGGIGEGHEVLGSMERYDSIGNAWERMAPMPVGVLHPAVAVKDQRLYLFGGEDVMQNPVRLIQVYHISRNTWFKMETRMIKNVCAPAVVLGERIVIVGGYTRRILAYDPQSNKFVKCADMKDRRMHHGAAVMGKKLYVTGGRRLTTDCSIEDLASFDCYDPETDTWTSQGQLPHKLFDHACLTLQCIPHSVTVPSGP", "length": 585, "header": "tr|A0A287AV69-1|A0A287AV69_PIG Isoform 1 of Kelch like family member 38 OS=Sus scrofa OX=9823 GN=KLHL38 PE=4 SV=1 CANONICAL=A0A287AV69-1" }, "isoforms": [ { "isoform_ac": "A0A287AV69-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV69/entry#A0A287AV69-1", "sequence": { "sequence": "MDEELPDGLLFKDQDFSSDLLRQLNRLRQSRILTDVSICTGPWEAPCHRTVLASSSPYFRAMFCSNFRESREAKVQLKGIDSATLERIILYVYTGEARITAETVLPLMEAASMLQYPKLLEACSSYLQSQLTPGNCLGMVRLSEVFSCEPLRRKAREVALTHFPEVAASADLKELCALELRDYLGDDGLCGEEEKVFEALMVWIKHDLQARKRHVQELFRQVRLQYVHPAFFHHFIANDALLQSSPPCRTILEAARRQMFSLHSTPSAPDLQLLWHVPPRNSYQDFLLLLGGRKDNQQTTRDVLLYDAQSGQWRSLAKLPARLYKASAVTLHRSVYLLGGMAVGAGKSEPSHSVYVFSLKLNQWRPGPPMLAARYSHRSTAHKNFIFAIGGIGEGHEVLGSMERYDSIGNAWERMAPMPVGVLHPAVAVKDQRLYLFGGEDVMQNPVRLIQVYHISRNTWFKMETRMIKNVCAPAVVLGERIVIVGGYTRRILAYDPQSNKFVKCADMKDRRMHHGAAVMGKKLYVTGGRRLTTDCSIEDLASFDCYDPETDTWTSQGQLPHKLFDHACLTLQCIPHSVTVPSGP", "length": 585, "header": "tr|A0A287AV69-1|A0A287AV69_PIG Isoform 1 of Kelch like family member 38 OS=Sus scrofa OX=9823 GN=KLHL38 PE=4 SV=1 CANONICAL=A0A287AV69-1" }, "locus": { "chromosome": "4", "start_pos": 15800659, "end_pos": 15793951, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040283.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040283.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041995.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041995.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AV69", "url": "https://www.uniprot.org/uniprotkb/A0A287AV69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102160009", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102160009", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q1LYM6-1", "protein_name": "Kelch-like protein 38", "gene_name": "klhl38", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASTSTEVFPFKDQELSTQLLFQLNILRQEQIFTDVILCTEDKEIPCHRNVLVSSSPYFRAMFCSNFRESSQARVDLKGIASEVIECVVDYIYTGSITITMELVLPLMQAASMLQYGRLFEACSTFLQEQLNPENCLSMIRLSEILHCETLKERAKEMAVRCFSDVAASEDFCELTLPELMCYLEDDRLCAEEEQVFETLLAWIHHDPFSRRGAIHDLFKKVRLRFIHPTYLFQFIANDPLVQSSTLCTEIIESVRRLMFSVSAKCTKELKPLWTTPRRYTCRETLVVVGGRKNNEQTSREALLYDERTQRWQWLAKLPLRLYKAAYVCIHSILYVVGGLSLSLVSGDSAVSATVYTLSLKTNQWRTAEPMLEPRYAHQCVSYLHFIFALGGIGQDKQISNTVERYNSMFNQWEVMAPMPTAVLHPAVAANDQRIYVFGGEDALQNPVRLIQVYHISRNLWSRLETRTVKNVCAPAAVIEDKIYIVGGYTRRVIAYDTKANKFVKCTNMKERRMHHAATVINNKLYVTGGRFLNSHDVIEDSDCFECYDPKTDVWTSKGSLPYKLFDHGSLPLICVSNRPNPP", "length": 583 }, "evidence": [ { "id": "A0A287AV69", "url": "https://omabrowser.org/oma/group/A0A287AV69/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2WGJ6-1", "protein_name": "Kelch-like protein 38", "gene_name": "KLHL38", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDEESLDGLLFKDHDFSSDLLRQLNSLRQSRILTDVSICAGAREIPCHRNVLASSSPYFRAMFCSSFREKSEAKVQLKGIDPPTLDQIVSYVYTGEAHIATDNVLPVMEAASMLQFPKLFEACSSYLQSQLAPSNCLGMIRLSEILSCETLKKKAREVALTSFPEVAASADLKELCALELRDYLGDDGLCGEEEKVFEALMVWIKHDLQARKRYMQELFKQVRLQYIHPAFFHHFIANDALLQSSPACQIILETAKRQMFSLCGTTVPDCKLLLHVPPRNSYQDFLILLGGRKDSQQTTRDVLLYSKQTGQWQSLAKLPTRLYKASAITLHRSIYVLGGMAVSSGRSLVSHNVYIFSLKLNQWRLGEPMLVARYSHRSTAHKNFIFSIGGIGEGQELMGSMERYDSICNVWESMASMPVGVLHPAVAVKDQRLYLFGGEDIMQNPVRLIQVYHISRNSWFKMETRMIKNVCAPAVVLGERIVIVGGYTRRILAYDPQSNKFVKCADMKDRRMHHGATVMGNKLYVTGGRRLTTDCNIEDSASFDCYDPETDTWTSQGQLPHKLFDHACLTLQCIPRTSGLP", "length": 581 }, "evidence": [ { "id": "A0A287AV69", "url": "https://omabrowser.org/oma/group/A0A287AV69/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5BK60-1", "protein_name": "Kelch-like protein 38", "gene_name": "Klhl38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDEELPDAVVFKDQNFSSDLLRQLNGLRQSKILTDVSICSGACEVPCHRNVLASSSPYFRAMFCSHFRESREAKVQLKGISSTTLEQVIAYVYTGEVHISAANVLPLMEAAAMLQYPRMFEACSSYLQSQLAPSNCLGLVRLAEILSCDSLKKKAREVALTYFPEVAASADLKELCVMELRDYLGDDKLCGEEEKVFEALMAWVKHDLQARWRYMQELLQQVRLQYIHPAFFHHFIASDALLQSSPACQAILEMAKKQIFSLYGPSAQDCKLWHTPPRSSYQDFLLLLGGRKDNQQTTRDVLLYSIQTGQWQSLAKLPTRLYKASAVTLHRSVYVLGGMAVREGKGLISCSVYIFSMKLNQWRMGEPMLAARYSHRSTTHRNFIFSIGGTGEGQELLGSMERYDSIRDVWESMADMPMAVLHPAVAVKDQRLYLFGGEDIMQNPVRLIQVYHISRNTWYKMETRMIKNVCAPAVVLGEKIIIVGGYTRRILAYDPQSNKFVKCADMKDRRMHHGATVMGNKLYVTGGRRLTTDCNIEDSASFDCYDPETDTWTSQGQLPHTLFDHACLTLQCIPHMTSLS", "length": 580 }, "evidence": [ { "id": "A0A287AV69", "url": "https://omabrowser.org/oma/group/A0A287AV69/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BSF5-1", "protein_name": "Kelch-like protein 38", "gene_name": "Klhl38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEELPDGVVFKDHSFSSDLLRQLNGLRQSKILTDVSICSGAWEVPCHRSVLASSSPYFKAMFCSHFRESREAKVQMKGISSTTLEQVITYVYTGEVHISAANVLPLMEAAAMLQYPRVFEACSSYLQSQLAPSNCLGLVRLAEILSCDSLKKKAKEVALTYFPEVAASADLKELCAMELRDYLGDDRLCGEEEKVFEALMAWVKHDLQARWRHMQELLQQVRLQYIHPAFFHHFIANDALLQSSPACQAILEMARKQIFSLYGPSAQDCKLLWRMPPRSSYQDFLLLLGGRKDNQQTTRDVLLYSGQTGQWQSLAKLPIRLYKASAVTLHRSVYVLGGMTVSEGKSLISCGVYIFSLKLNQWRVGEPMLAARYSHRSTTHRNFIFSIGGTGEGQELLASMERYDSIRDVWESMAGMPVAVLHPAVAVKDQRLYLFGGEDIMQNPVRLIQVYHISRNTWYKMETRMIKNVCAPAVVLGEQIVIVGGYTRRILAYDPQSNKFVKCADMKDRRMHHGATVMGNKLYVTGGRRLTTDCNIEDSASFDCYDPETDTWTSQGQLPHKLFDHACLTLQCIPHMTSLS", "length": 581 }, "evidence": [ { "id": "A0A287AV69", "url": "https://omabrowser.org/oma/group/A0A287AV69/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AV69", "url": "https://www.uniprot.org/uniprotkb/A0A287AV69" } ], "pmid": "" }, { "name": "Cul3-RING ubiquitin ligase complex", "id": "GO:0031463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031463", "evidence": [ { "database": "UniProtKB", "id": "A0A287AV69", "url": "https://www.uniprot.org/uniprotkb/A0A287AV69" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A287AV69", "url": "https://www.uniprot.org/uniprotkb/A0A287AV69" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A287AV69", "url": "https://www.uniprot.org/uniprotkb/A0A287AV69" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AV69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AV69" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 101, "start_aa": "Thr", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AV79-1", "uniprot_ac": "A0A287AV79", "uniprot_id": "A0A287AV79_PIG", "mass": { "chemical_mass": 105644.0, "monoisotopic_mass": 105644.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF865", "type": "recommended", "evidence": [ { "id": "A0A287AV79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AV79" } ] } ], "protein_names": [ { "name": "Zinc finger protein 865", "type": "recommended", "evidence": [ { "id": "A0A287AV79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AV79/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AV79", "url": "https://www.uniprot.org/uniprotkb/A0A287AV79#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A5G2R0X7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AV79", "url": "https://www.uniprot.org/uniprotkb/A0A287AV79" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF865", "url": "https://www.uniprot.org/uniprotkb/A0A287AV79", "locus": { "chromosome": "6", "start_pos": 59736389, "end_pos": 59732748, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000029156", "url": "https://www.ensembl.org/id/ENSSSCG00000029156" } ] } } ], "crossref": [ { "id": "A0A287AV79", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AV79", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000029156", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029156", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47772", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47772", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47772:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47772:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AV79", "url": "https://www.uniprot.org/uniprotkb/A0A287AV79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AV79-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV79-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0X7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0X7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEANPAGSGAGGGGTSGLGGEDGVHFQSYPFDFLEFLNHQRFEPMELYGEHAKAVAALPCAPGPPPQPPPQPPPPQYDYPPQSTFKPKAEAPSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAFGAPPPPLFDAAFPAPQWGIVDLSGHQHLFGNLKRGGPASGPGVTPGLATPAGTPGPLPAPSQTPPGPAAGAACDPSKDDKGYFRRLKYLMERRFPCGVCQKSFKQSSHLVQHMLVHSGERPYECGVCGRTYNHVSSLIRHRRCHKDVPPAAGGPPQPGAPLPPLGLPAAASAAPAGVGVPPPPAAAAAAAGGGDGPFACTLCWKVFKKPSHLHQHQIIHTGEKPFSCSVCSKSFNRRESLKRHVKTHSADLLRLPCGICGKAFRDAAYLLKHQAAHAGAGAAGPRPVYPCDLCGKSYSAPQSLLRHKAAHAAPTAPDAPKDAAASKAAAAAAAVVYGAVPVPLLGAHPLLLGGGAGASAAGGSGASVPGKTFCCGICGRGFGRRETLKRHERIHTGEKPHQCPVCGKRFRESFHLSKHHVVHTRERPYKCELCGKVFGYPQSLTRHRQVHRLQLPCALAGAAGLPATQGAAGACGPGTSATSVGAADGLSYACSDCGEHFPDLFHVMSHKEAHMAEKPYGCDACGKTFGFIENLMWHKLVHQAAPERLLPPAPGGPQPSDGSGSNDAASVLDNGLAGEVGAAVAALAGVSGGDDSSGAAVAGGGGGASAGAERFSCATCGQSFKHFLGLVTHKYVHLVRRTLGCGLCGQSFAGAYDLLLHRRSHRQKRGFRCPVCGKRFWEAALLMRHQRCHTEQRPYRCGVCGRGFLRSWYLRQHRVVHTGERAFKCGVCAKRFAQSSSLAEHRRLHAVARPQRCGACGKTFRYRSNLLEHQRLHLGERAYRCEHCGKGFFYLSSVLRHQRAHEPPRPELRCPACLKAFKDPGYFRKHLAAHQGGRPFRCSSCGEGFANTYGLKKHRLAHKAEGLGGPGAGAGTLTGKDT", "length": 1005, "header": "tr|A0A287AV79-1|A0A287AV79_PIG Isoform 1 of Zinc finger protein 865 OS=Sus scrofa OX=9823 GN=ZNF865 PE=3 SV=2 CANONICAL=A0A287AV79-1" }, "isoforms": [ { "isoform_ac": "A0A287AV79-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV79/entry#A0A287AV79-1", "sequence": { "sequence": "MEANPAGSGAGGGGTSGLGGEDGVHFQSYPFDFLEFLNHQRFEPMELYGEHAKAVAALPCAPGPPPQPPPQPPPPQYDYPPQSTFKPKAEAPSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAFGAPPPPLFDAAFPAPQWGIVDLSGHQHLFGNLKRGGPASGPGVTPGLATPAGTPGPLPAPSQTPPGPAAGAACDPSKDDKGYFRRLKYLMERRFPCGVCQKSFKQSSHLVQHMLVHSGERPYECGVCGRTYNHVSSLIRHRRCHKDVPPAAGGPPQPGAPLPPLGLPAAASAAPAGVGVPPPPAAAAAAAGGGDGPFACTLCWKVFKKPSHLHQHQIIHTGEKPFSCSVCSKSFNRRESLKRHVKTHSADLLRLPCGICGKAFRDAAYLLKHQAAHAGAGAAGPRPVYPCDLCGKSYSAPQSLLRHKAAHAAPTAPDAPKDAAASKAAAAAAAVVYGAVPVPLLGAHPLLLGGGAGASAAGGSGASVPGKTFCCGICGRGFGRRETLKRHERIHTGEKPHQCPVCGKRFRESFHLSKHHVVHTRERPYKCELCGKVFGYPQSLTRHRQVHRLQLPCALAGAAGLPATQGAAGACGPGTSATSVGAADGLSYACSDCGEHFPDLFHVMSHKEAHMAEKPYGCDACGKTFGFIENLMWHKLVHQAAPERLLPPAPGGPQPSDGSGSNDAASVLDNGLAGEVGAAVAALAGVSGGDDSSGAAVAGGGGGASAGAERFSCATCGQSFKHFLGLVTHKYVHLVRRTLGCGLCGQSFAGAYDLLLHRRSHRQKRGFRCPVCGKRFWEAALLMRHQRCHTEQRPYRCGVCGRGFLRSWYLRQHRVVHTGERAFKCGVCAKRFAQSSSLAEHRRLHAVARPQRCGACGKTFRYRSNLLEHQRLHLGERAYRCEHCGKGFFYLSSVLRHQRAHEPPRPELRCPACLKAFKDPGYFRKHLAAHQGGRPFRCSSCGEGFANTYGLKKHRLAHKAEGLGGPGAGAGTLTGKDT", "length": 1005, "header": "tr|A0A287AV79-1|A0A287AV79_PIG Isoform 1 of Zinc finger protein 865 OS=Sus scrofa OX=9823 GN=ZNF865 PE=3 SV=2 CANONICAL=A0A287AV79-1" }, "locus": { "chromosome": "6", "start_pos": 59735913, "end_pos": 59732748, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028486.3", "url": "https://www.ensembl.org/id/ENSSSCT00000028486.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048021.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048021.2" } ] } }, { "isoform_ac": "A0A5G2R0X7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV79/entry#A0A5G2R0X7-1", "sequence": { "sequence": "MEANPAGSGAGGGGTSGLGGEDGVHFQSYPFDFLEFLNHQRFEPMELYGEHAKAVAALPCAPGPPPQPPPQPPPPQYDYPPQSTFKPKAEAPSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAFGAPPPPLFDAAFPAPQWGIVDLSGHQHLFGNLKRGGPASGPGVTPGLATPAGTPGPLPAPSQTPPGPAAGAACDPSKDDKGYFRRLKYLMERRFPCGVCQKSFKQSSHLVQHMLVHSGERPYECGVCGRTYNHVSSLIRHRRCHKDVPPAAGGPPQPGAPLPPLGLPAAASAAPAGVGVPPPPAAAAAAAGGGDGPFACTLCWKVFKKPSHLHQHQIIHTGEKPFSCSVCSKSFNRRESLKRHVKTHSADLLRLPCGICGKAFRDAAYLLKHQAAHAGAGAAGPRPVYPCDLCGKSYSAPQSLLRHKAAHAAPTAPDAPKDAAASKAAAAAAAVVYGAVPVPLLGAHPLLLGGGAGASAAGGSGASVPGKTFCCGICGRGFGRRETLKRHERIHTGEKPHQCPVCGKRFRESFHLSKHHVVHTRERPYKCELCGKVFGYPQSLTRHRQVHRLQLPCALAGAAGLPATQGAAGACGPGTSATSVGAADGLSYACSDCGEHFPDLFHVMSHKEAHMAEKPYGCDACGKTFGFIENLMWHKLVHQAAPERLLPPAPGGPQPSDGSGSNDAASVLDNGLAGEWSMSGLGGHMGGLGALGLWGWGAGWQTRLVQSGE", "length": 736, "header": "tr|A0A5G2R0X7-1|A0A287AV79_PIG Computationally mapped isoform of Zinc finger protein 865 OS=Sus scrofa OX=9823 GN=ZNF865 PE=3 SV=1 CANONICAL=A0A287AV79-1" }, "locus": { "chromosome": "6", "start_pos": 59736386, "end_pos": 59732748, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074664.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074664.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070820.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070820.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 168, "start_aa": "Thr", "end_pos": 168, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr168", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 173, "start_aa": "Thr", "end_pos": 173, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr173", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 177, "start_aa": "Thr", "end_pos": 177, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr177", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": 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"MECALDAQSLISISLRKIHSSRTQRGGIKLHKNLLVSYVLRNARQLYLSERYAELYRRQQQQQQQQQQPPHHQHQHLAYAAPGMPASAADFGPLQLGGGGDAEAREPAARHQLHQLHQLHQLHLQQQLHQHQHPAPRGCAAAAGAPAGGAGALSELPGCAALQPPHGAPHRGQPLEPLQPGPAPLPPPAPAALCPRDPRASAACSAPSAPPGAAPQAAAAASPPASPAPASSPGFYRGAYPAPSDFGVHCSSQTTVLDLDTHVVTTVENGYLHQDCCASAHCPCCGQGAPGPGLASAAGCKRKYYPGQEEEDDDDDAGDLGAEPPGGATFAPCKRARFEDFCPDSSPDASNISNLISIFGSGFSGLVSRQPDSSEQPPPLNGQLCAKQALASLGAWTRAIVAF", "length": 403, "header": "tr|A0A287AVA4-1|A0A287AVA4_PIG Isoform 1 of Immediate early response 5 like OS=Sus scrofa OX=9823 GN=IER5L PE=3 SV=1 CANONICAL=A0A287AVA4-1" }, "isoforms": [ { "isoform_ac": "A0A287AVA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVA4/entry#A0A287AVA4-1", "sequence": { "sequence": "MECALDAQSLISISLRKIHSSRTQRGGIKLHKNLLVSYVLRNARQLYLSERYAELYRRQQQQQQQQQQPPHHQHQHLAYAAPGMPASAADFGPLQLGGGGDAEAREPAARHQLHQLHQLHQLHLQQQLHQHQHPAPRGCAAAAGAPAGGAGALSELPGCAALQPPHGAPHRGQPLEPLQPGPAPLPPPAPAALCPRDPRASAACSAPSAPPGAAPQAAAAASPPASPAPASSPGFYRGAYPAPSDFGVHCSSQTTVLDLDTHVVTTVENGYLHQDCCASAHCPCCGQGAPGPGLASAAGCKRKYYPGQEEEDDDDDAGDLGAEPPGGATFAPCKRARFEDFCPDSSPDASNISNLISIFGSGFSGLVSRQPDSSEQPPPLNGQLCAKQALASLGAWTRAIVAF", "length": 403, "header": "tr|A0A287AVA4-1|A0A287AVA4_PIG Isoform 1 of Immediate early response 5 like OS=Sus scrofa OX=9823 GN=IER5L PE=3 SV=1 CANONICAL=A0A287AVA4-1" }, "locus": { "chromosome": "1", "start_pos": 269455310, "end_pos": 269454102, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006236.3", "url": "https://www.ensembl.org/id/ENSSSCT00000006236.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048043.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048043.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVA4", "url": "https://www.uniprot.org/uniprotkb/A0A287AVA4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102161937", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102161937", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1B8J9-1", "protein_name": "Immediate early response 5 like", "gene_name": "IER5L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MECALDAQSLISISLRKIHSSRTQRGGIKLHKNLLVSYVLRNARQLYLSERYAELYRRQQQQQQQQQQPPHHQHQHLAYAAPGMPASAADFGPLQLGGGGDAEAREPVARHQLHQLHQLHQLHLQQQLHQHPAPRGCAAAAAAGAPAGGAGALSELPGCAALQPPHGAPHRGQPLEPLQPGPAPLPPPASLCPRDPRASAACSAPSAPPGAAPQAAAAASPPSSPAPASSPGFYRGAYPAPSDFGVHCSSQTTVLDLDTHVVTTVENGYLHQDCCASAHCPCCGQGAPGPGLASATGCKRKYYPGQEEEDDDDEDAGDLGAEPPGGVPFAPCKRARFEDFCPDSSPDASNISNLISIFGSGFSGLVSRQPDSSEQPPPLNGQLCAKQALASLGAWTRAIVAF", "length": 402 }, "evidence": [ { "id": "A0A287AVA4", "url": "https://omabrowser.org/oma/group/A0A287AVA4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5PQP0-1", "protein_name": "Immediate early response gene 5-like protein", "gene_name": "Ier5l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MECALDAQSLISISLRKIHSSRTQRGGIKLHKNLLVSYVLRNARQLYLSERYAELYRRQQQQQQQQQQPPHHQHQHLAYAAPGMPASAADFGPLQLGGGGDAEAREPVARHQLHQLHQLHQLHLQQQLHQHQHPAPRGCTAAAPVAVAGAPAGCAGALSELPGCAALQPPHGAPHRGQHLEPLQPGPAPLPPPAPAALCPRDPRVPAACSAPSAPPGAAPPTVAASSPPASPAPSSSPGFYRGAYPAPSDFGVHCSSQTTVLDLDTHVVTTVENGYLHQDCCASAHCPCCGQGAPGPGLASAAGCKRKYYPGQEEEDDEEEDAGDLGAEPPGGTPFAPCKRARFEDFCPDSSPDASNISNLISIFGSGFSGLVSRQPDSSEQPPPLNGQLCAKQALASLGAWTRAIVAF", "length": 409 }, "evidence": [ { "id": "A0A287AVA4", "url": "https://omabrowser.org/oma/group/A0A287AVA4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5T953-1", "protein_name": "Immediate early response gene 5-like protein", "gene_name": "IER5L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MECALDAQSLISISLRKIHSSRTQRGGIKLHKNLLVSYVLRNARQLYLSERYAELYRRQQQQQQQQPPHHQHQHLAYAAPGMPASAADFGPLQLGGGGDAEAREPAARHQLHQLHQLHQLHLQQQLHQHQHPAPRGCAAAAAAGAPAGGAGALSELPGCAALQPPHGAPHRGQPLEPLQPGPAPLPLPLPPPAPAALCPRDPRAPAACSAPPGAAPPAAAASPPASPAPASSPGFYRGAYPTPSDFGLHCSSQTTVLDLDTHVVTTVENGYLHQDCCASAHCPCCGQGAPGPGLASAAGCKRKYYPGQEEEEDDEEDAGGLGAEPPGGAPFAPCKRARFEDFCPDSSPDASNISNLISIFGSGFSGLVSRQPDSSEQPPPLNGQLCAKQALASLGAWTRAIVAF", "length": 404 }, "evidence": [ { "id": "A0A287AVA4", "url": "https://omabrowser.org/oma/group/A0A287AVA4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NYT3-1", "protein_name": "Immediate early response gene 5-like protein", "gene_name": "ier5l", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MECAVDAQSLISISLRKIHNSRTQRGGIKLHKNLLVSYVLRNARQVYMNEKYAEIYRMQQYEEVMTVCNEIQELNPLDLAEDCEDQTADCCGSASESASLCGALLPAVGHQTSPAAQHIQPASACSVPLALQSEEVCKAAPEPSFYRSCCAEAYPVSNCDFSPVNNMHCNKTTVLDLDTHVVTTVENGYLHQDCCASLQQCCQGAQSPAKKRKLDFGYYVSEIEEAPDFTPCKRAKFEDSSYAITEPLDTSNISNLISIFGSGFSGLVSRQADLEQALNGQFCSKQALASLGAWTRAIVAF", "length": 301 }, "evidence": [ { "id": "A0A287AVA4", "url": "https://omabrowser.org/oma/group/A0A287AVA4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q99J55-1", "protein_name": "Immediate early response gene 5-like protein", "gene_name": "Ier5l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MECALDAQSLISISLRKIHSSRTQRGGIKLHKNLLVSYVLRNARQLYLSERYAELYRRQQQQQQQQPPHHQHQHLAYAAPGMPASAADFGPLQLGGGGDAEAREPVARHQLHQLHQLHQLHLQQQLHQHQHPAPRGCTAAAPVAVAGAPAGCAGALSELPGCAALQPPHGAPHRGQHLEPLQPGPAPLPPPAPAALCPRDPRVPAACSAPSVLPGAAPSTVAASSPPASTAPSSSTGFYRGAYPAPSDFGVHCSSQTTVLDLDTHVVTTVENGYLHQDCCASAHCPCCGQGAPGPGLASAAGCKRKYYPGQEEEDDEEDAGDLGAEPPGGTPFAPCKRARFEDFCPDSSPDASNISNLISIFGSGFSGLVSRQPDSSEQPPPLNGQLCAKQALASLGAWTRAIVAF", "length": 406 }, "evidence": [ { "id": "A0A287AVA4", "url": "https://omabrowser.org/oma/group/A0A287AVA4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 351, "end_pos": 353, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AVA4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 403, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AVA4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AVA4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 351, "end_pos": 353 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AVC8-1", "uniprot_ac": "A0A287AVC8", "uniprot_id": "A0A287AVC8_PIG", "mass": { "chemical_mass": 73199.0, "monoisotopic_mass": 73199.0 }, "refseq": { "ac": "XP_013850699", "name": "zinc finger protein 84-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850699" }, "gene_names": [ { "name": "LOC100517161", "type": "recommended", "evidence": [ { "id": "A0A287AVC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" } ] }, { "name": "LOC100517161", "type": "synonym", "evidence": [ { "id": "XP_013850699", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850699" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A287AVC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 84-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013850699", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850699" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FC90", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC90#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100517161", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8", "locus": {} } ], "crossref": [ { "id": "A0A287AVC8", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AVC8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032969", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032969", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517161", "url": "https://www.ncbi.nlm.nih.gov/gene/100517161", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517161", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517161", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HECSECQ", "url": "https://omabrowser.org/oma/group/HECSECQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF397", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF397", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013850699", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850699", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FC90", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FC90-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC90-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNSQGSLSFKDVAVVFTWEEWQLLDPIQKNLYQDVMLENYINLVSMGYQVTNTDSFYQLEQERPWIIEEEIQNQIHPEDAWQVDNHRDWHKGNHGNLETMENHQKENAFGKISSLSLNLDVSLAQISHTFDILEKHLKPNLQYIIQNKGHLRNEIDFNQYDKLFLYTKYEKIHTGQKYSEFNGHVKAFRHHHESQLIKHWKSQTAEKHCIGSDCGKAFSQKSDLIKHHRAHRGEKPYGCSRCQKAFSQKSHLILHQRTHMGEKPYECNKCGKAFTDKSCLNKHQRTHTREKRFECRVCQTGFSDKSQLTLHQRTHTGEKPYRCGECQKSFSNKSQLIIHQRSHTGEKPYGCKECGKTFPLKFSLILHQKTHTGEKPYGCNECGKAFIQRSELIRHQRTHTGAKPYNCSECGKGFSVKSLLNTHWRTHTGEKPYGCHECGKTFSIKFSLILHQRTHTGEKPYECSQCQKAFTQKSHLTIHQRSHTGEKAHECSECHKAFSRKSYLLIHQRIHSGEKPYECHECGKTFSHKFSLIIHQRIHTGEKPYGCSECGKTFPIKFSLVLHQQTHTGKKPHECNQCQKSFAQKSHLIIHQRTHTGEKPYGCSQCGKTFSHKFSLLLHQKTHREKS", "length": 628, "header": "tr|A0A287AVC8-1|A0A287AVC8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100517161 PE=3 SV=2 CANONICAL=A0A287AVC8-1" }, "isoforms": [ { "isoform_ac": "A0A287AVC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8/entry#A0A287AVC8-1", "sequence": { "sequence": "MSNSQGSLSFKDVAVVFTWEEWQLLDPIQKNLYQDVMLENYINLVSMGYQVTNTDSFYQLEQERPWIIEEEIQNQIHPEDAWQVDNHRDWHKGNHGNLETMENHQKENAFGKISSLSLNLDVSLAQISHTFDILEKHLKPNLQYIIQNKGHLRNEIDFNQYDKLFLYTKYEKIHTGQKYSEFNGHVKAFRHHHESQLIKHWKSQTAEKHCIGSDCGKAFSQKSDLIKHHRAHRGEKPYGCSRCQKAFSQKSHLILHQRTHMGEKPYECNKCGKAFTDKSCLNKHQRTHTREKRFECRVCQTGFSDKSQLTLHQRTHTGEKPYRCGECQKSFSNKSQLIIHQRSHTGEKPYGCKECGKTFPLKFSLILHQKTHTGEKPYGCNECGKAFIQRSELIRHQRTHTGAKPYNCSECGKGFSVKSLLNTHWRTHTGEKPYGCHECGKTFSIKFSLILHQRTHTGEKPYECSQCQKAFTQKSHLTIHQRSHTGEKAHECSECHKAFSRKSYLLIHQRIHSGEKPYECHECGKTFSHKFSLIIHQRIHTGEKPYGCSECGKTFPIKFSLVLHQQTHTGKKPHECNQCQKSFAQKSHLIIHQRTHTGEKPYGCSQCGKTFSHKFSLLLHQKTHREKS", "length": 628, "header": "tr|A0A287AVC8-1|A0A287AVC8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100517161 PE=3 SV=2 CANONICAL=A0A287AVC8-1" }, "locus": { "chromosome": "6", "start_pos": 58200868, "end_pos": 58194713, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045748.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045748.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047822.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047822.2" } ] } }, { "isoform_ac": "A0A8W4FC90-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8/entry#A0A8W4FC90-1", "sequence": { "sequence": "MSNSQGSLSFKDVAVVFTWEEWQLLDPIQKNLYQDVMLENYINLVSMEDAWQVDNHRDWHKGNHGNLETMENHQKENAFGKISSLSLNLDVSLAQISHTFDILEKHLKPNLQYIIQNKGHLRNEIDFNQYDKLFLYTKYEKIHTGQKYSEFNGHVKAFRHHHESQLIKHWKSQTAEKHCIGSDCGKAFSQKSDLIKHHRAHRGEKPYGCSRCQKAFSQKSHLILHQRTHMGEKPYECNKCGKAFTDKSCLNKHQRTHTREKRFECRVCQTGFSDKSQLTLHQRTHTGEKPYRCGECQKSFSNKSQLIIHQRSHTGEKPYGCKECGKTFPLKFSLILHQKTHTGEKPYGCNECGKAFIQRSELIRHQRTHTGAKPYNCSECGKGFSVKSLLNTHWRTHTGEKPYGCHECGKTFSIKFSLILHQRTHTGEKPYECSQCQKAFTQKSHLTIHQRSHTGEKAHECSECHKAFSRKSYLLIHQRIHSGEKPYECHECGKTFSHKFSLIIHQRIHTGEKPYGCSECGKTFPIKFSLVLHQQTHTGKKPHECNQCQKSFAQKSHLIIHQRTHTGEKPYGCSQCGKTFSHKFSLLLHQKTHREKS", "length": 597, "header": "tr|A0A8W4FC90-1|A0A287AVC8_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100517161 PE=3 SV=1 CANONICAL=A0A287AVC8-1" }, "locus": { "chromosome": "6", "start_pos": 58200868, "end_pos": 58194713, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104517.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104517.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076473.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076473.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FC90", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC90" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517161", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517161", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nuclear lumen", "id": "GO:0031981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031981", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" } ], "pmid": "" }, { "name": "regulation of cell differentiation", "id": "GO:0045595", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045595", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" } ], "pmid": "" }, { "name": "regulation of protein catabolic process", "id": "GO:0042176", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042176", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" } ], "pmid": "" }, { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVC8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AVC8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 628, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AVC8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AVC8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AVC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVC8" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 208, "end_pos": 237, "start_aa": "Lys", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": 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"annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AVE7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1081, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AVE7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AVE7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AVE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVE7" }, { "id": "SM01177", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01177" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Atos-like conserved", "eco_id": "ECO_0000259", "start_pos": 883, "end_pos": 941, "start_aa": "Leu", "end_aa": "Met", "glycosite_overlap": "" } ], 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"ssc:100511836", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511836", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q2KIX3-1", "protein_name": "Transmembrane protein 42", "gene_name": "TMEM42", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGRPLPGGGGVCAAAYPNTSAGFPPHLQAGAMRRRFWGVFNCLCAGAFGALAAASAKLAFGREVNVGFCVLGIIMMATTNSLMWTFFSRGLSLSMSSAIASVTVTFSNILNSAFLGFVLYGECQEVLWWGGVFLILCGLTLIHRELPPPRKPLPHKQR", "length": 159 }, "evidence": [ { "id": "A0A287AVE9", "url": "https://omabrowser.org/oma/group/A0A287AVE9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q55FN6-1", "protein_name": "EamA domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKRETKKSNNEIKKSINKDNKIKNEEKKPLVNTINLKLSFIYSLIGGVFASLSSVCGKVALDSQFLSQFISSDNIELITRAISIGSIFICTTMQWRYAAKGMDLANSTLTSTVITTSSNFFFTAFFGWLFFKEQLSFKWWIGAFFIMFGLFLMNADQDKIETNQKSDKLKKKD", "length": 173 }, "evidence": [ { "id": "A0A287AVE9", "url": "https://omabrowser.org/oma/group/A0A287AVE9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q69YG0-1", "protein_name": "Transmembrane protein 42", "gene_name": "TMEM42", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAERPGPPGGAVSATAYPDTPAEFPPHLQAGAMRRRFWGVFNCLCAGAFGALAAASAKLAFGSEVSMGLCVLGIIVMASTNSLMWTFFSRGLSFSMSSAIASVTVTFSNILSSAFLGYVLYGECQEVLWWGGVFLILCGLTLIHRKLPPTWKPLPHKQQ", "length": 159 }, "evidence": [ { "id": "A0A287AVE9", "url": "https://omabrowser.org/oma/group/A0A287AVE9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CR22-1", "protein_name": "Transmembrane protein 42", "gene_name": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { 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9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AVG2", "url": "https://www.uniprot.org/uniprotkb/A0A287AVG2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "URGCP", "url": "https://www.uniprot.org/uniprotkb/A0A287AVG2", "locus": { "chromosome": "18", "start_pos": 48821582, "end_pos": 48780576, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040519", "url": "https://www.ensembl.org/id/ENSSSCG00000040519" } ] } } ], "crossref": [ { "id": "A0A287AVG2", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AVG2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040519", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040519", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22796", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22796", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22796:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22796:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25496", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25496", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25683", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25683", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26773", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26773", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AVG2", "url": "https://www.uniprot.org/uniprotkb/A0A287AVG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVG2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AY87", "url": "https://www.uniprot.org/uniprotkb/A0A287AY87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AY87-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY87-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF86-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASPGHSDLGDVAPEIKASERRTAVAIADLEWREMAGDDCEFHYGDGTNEAQESDFPTVERSRLQEMLSLLGLEPYQVQKLSLQDALQISSDSMKNWAPQAPRDLPWNFLRKLQALNAEARSTTMVLDVAPDTRPVEKESQMEEEIIFWDTADDISADIYSFSELPTPDTPVNPLDLLCALLHSSDSFLQQEIVFKMSLCQFALPLVLPDPENHYHTFLLWAMRGAVRTWWSPPPRAAGGFREDSPGLSRAPAFAFVRMEVSSNSKSQLLNAMLSPGHRQRDCFWHRDLSLGTNPREIADGLVEISWFLPSGREDLDIFPEPVAFLNLRGDIGSHWLQFKLLTEVASAVFILTDNISKKEYKLLYSMKGSATKYYFILSPYRGKRNTNLRFLNRLIPVLKMDHSHVLVKVSSTDSAGFVRRVRAIVAHVTRSPCRRVSVEDMAHAARKLGLKVDEDCEECQRAKDRMERITRKIKDSDAYRRDELRLGDPWRKAAQVEKELCQVQWAGDPPEKSRAELRHRLLELRAQQNGHEPAWGLQEFISGLSSPSLGEKQYFLRWMEWGLARVAQPRPRQPPETLLPLRPKHCAAVDGSEPPWPEPLGVEHFLREMGQFYEAESCLVEAGKLAAGQRRFAHFPGLALELLLKGLPLELIDGNTLSPPLRWVTGLLKELHVRLERRARLVVLSALGAPGTGKSTLLNTMFGLRFAGRGSGPRGACMQLITVAESFSQDLGCDHILVIDSGGLVGGVLAEAGERFEREAALATLIMGLSNVTVVSLAETRDVPPAILHAFLRLEKTGHMPNYQFVYQNLHDVSVPGSRPRERRQLGDQPGDVSRATAQLERQGDGIRTLADLAFCDPEKQHIWHIPGLWHGVPPMAAVSLGYSEAIFELKRCLLENIRNGLSNQNKNIQQLIELVRRL", "length": 920, "header": "tr|A0A287AVG2-1|A0A287AVG2_PIG Isoform 1 of Upregulator of cell proliferation OS=Sus scrofa OX=9823 GN=URGCP PE=3 SV=2 CANONICAL=A0A287AVG2-1" }, "isoforms": [ { "isoform_ac": "A0A287AVG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVG2/entry#A0A287AVG2-1", "sequence": { "sequence": "MASPGHSDLGDVAPEIKASERRTAVAIADLEWREMAGDDCEFHYGDGTNEAQESDFPTVERSRLQEMLSLLGLEPYQVQKLSLQDALQISSDSMKNWAPQAPRDLPWNFLRKLQALNAEARSTTMVLDVAPDTRPVEKESQMEEEIIFWDTADDISADIYSFSELPTPDTPVNPLDLLCALLHSSDSFLQQEIVFKMSLCQFALPLVLPDPENHYHTFLLWAMRGAVRTWWSPPPRAAGGFREDSPGLSRAPAFAFVRMEVSSNSKSQLLNAMLSPGHRQRDCFWHRDLSLGTNPREIADGLVEISWFLPSGREDLDIFPEPVAFLNLRGDIGSHWLQFKLLTEVASAVFILTDNISKKEYKLLYSMKGSATKYYFILSPYRGKRNTNLRFLNRLIPVLKMDHSHVLVKVSSTDSAGFVRRVRAIVAHVTRSPCRRVSVEDMAHAARKLGLKVDEDCEECQRAKDRMERITRKIKDSDAYRRDELRLGDPWRKAAQVEKELCQVQWAGDPPEKSRAELRHRLLELRAQQNGHEPAWGLQEFISGLSSPSLGEKQYFLRWMEWGLARVAQPRPRQPPETLLPLRPKHCAAVDGSEPPWPEPLGVEHFLREMGQFYEAESCLVEAGKLAAGQRRFAHFPGLALELLLKGLPLELIDGNTLSPPLRWVTGLLKELHVRLERRARLVVLSALGAPGTGKSTLLNTMFGLRFAGRGSGPRGACMQLITVAESFSQDLGCDHILVIDSGGLVGGVLAEAGERFEREAALATLIMGLSNVTVVSLAETRDVPPAILHAFLRLEKTGHMPNYQFVYQNLHDVSVPGSRPRERRQLGDQPGDVSRATAQLERQGDGIRTLADLAFCDPEKQHIWHIPGLWHGVPPMAAVSLGYSEAIFELKRCLLENIRNGLSNQNKNIQQLIELVRRL", "length": 920, "header": "tr|A0A287AVG2-1|A0A287AVG2_PIG Isoform 1 of Upregulator of cell proliferation OS=Sus scrofa OX=9823 GN=URGCP PE=3 SV=2 CANONICAL=A0A287AVG2-1" }, "locus": { "chromosome": "18", "start_pos": 48813898, "end_pos": 48780632, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051691.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051691.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048117.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048117.2" } ] } }, { "isoform_ac": "A0A287AY87-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVG2/entry#A0A287AY87-1", "sequence": { "sequence": "MAGDDCEFHYGDGTNEAQESDFPTVERSRLQEMLSLLGLEPYQVQKLSLQDALQISSDSMKNWAPQAPRDLPWNFLRKLQALNAEARSTTMVLDVAPDTRPVEKESQMEEEIIFWDTADDISADIYSFSELPTPDTPVNPLDLLCALLHSSDSFLQQEIVFKMSLCQFALPLVLPDPENHYHTFLLWAMRGAVRTWWSPPPRAAGGFREDSPGLSRAPAFAFVRMEVSSNSKSQLLNAMLSPGHRQRDCFWHRDLSLGTNPREIADGLVEISWFLPSGREDLDIFPEPVAFLNLRGDIGSHWLQFKLLTEVASAVFILTDNISKKEYKLLYSMKGSATKYYFILSPYRGKRNTNLRFLNRLIPVLKMDHSHVLVKVSSTDSAGFVRRVRAIVAHVTRSPCRRVSVEDMAHAARKLGLKVDEDCEECQRAKDRMERITRKIKDSDAYRRDELRLGDPWRKAAQVEKELCQVQWAGDPPEKSRAELRHRLLELRAQQNGHEPAWGLQEFISGLSSPSLGEKQYFLRWMEWGLARVAQPRPRQPPETLLPLRPKHCAAVDGSEPPWPEPLGVEHFLREMGQFYEAESCLVEAGKLAAGQRRFAHFPGLALELLLKGLPLELIDGNTLSPPLRWVTGLLKELHVRLERRARLVVLSALGAPGTGKSTLLNTMFGLRFAGRGSGPRGACMQLITVAESFSQDLGCDHILVIDSGGLVGGVLAEAGERFEREAALATLIMGLSNVTVVSLAETRDVPPAILHAFLRLEKTGHMPNYQFVYQNLHDVSVPGSRPRERRQLGDQPGDVSRATAQLERQGDGIRTLADLAFCDPEKQHIWHIPGLWHGVPPMAAVSLGYSEAIFELKRCLLENIRNGLSNQNKNIQQLIELVRRL", "length": 886, "header": "tr|A0A287AY87-1|A0A287AY87_PIG Computationally mapped isoform of Upregulator of cell proliferation OS=Sus scrofa OX=9823 GN=URGCP PE=3 SV=2 CANONICAL=A0A287AVG2-1" }, "locus": { "chromosome": "18", "start_pos": 48813898, "end_pos": 48809278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055409.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055409.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048911.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048911.2" } ] } }, { "isoform_ac": "A0A5G2QF86-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVG2/entry#A0A5G2QF86-1", "sequence": { "sequence": "MASPGHSDLGDVAPEIKASERRTAVAIADLEWREMAGDDCEFHYGDGTNEAQESDFPTDERNWGSGRSVRLPRLHSQEAVIQTSRPHVPHCFAVDLQYLSSNFMETLKKHYQLKRVLQLKLKSSWKLPLWWSQTNLTGIHEDLGSIPRLVQWVGDLALL", "length": 159, "header": "tr|A0A5G2QF86-1|A0A287AVG2_PIG Computationally mapped isoform of Upregulator of cell proliferation OS=Sus scrofa OX=9823 GN=URGCP PE=3 SV=1 CANONICAL=A0A287AVG2-1" }, "locus": { "chromosome": "18", "start_pos": 48820019, "end_pos": 48780632, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072004.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072004.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062390.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062390.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., 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Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVG8", "url": "https://www.uniprot.org/uniprotkb/A0A287AVG8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110257372", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257372", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A0C8-1", "protein_name": "Fibronectin type III domain containing 11", "gene_name": "Fndc11", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"url": "https://www.uniprot.org/uniprotkb/A0A287AVJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLDGQLEVGYLLHLLLQSQSPSLKRPLQGRERRYPKGKRGKLMLAGMGRTLQKMEMPTQTRHRKLKVLEMPRNVCAFLVTVHLWRLHTLFSLSTFSVDLTPLITERRTGT", "length": 110, "header": "tr|A0A287AVJ3-1|A0A287AVJ3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287AVJ3-1" }, "isoforms": [ { "isoform_ac": "A0A287AVJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVJ3/entry#A0A287AVJ3-1", "sequence": { "sequence": "MLDGQLEVGYLLHLLLQSQSPSLKRPLQGRERRYPKGKRGKLMLAGMGRTLQKMEMPTQTRHRKLKVLEMPRNVCAFLVTVHLWRLHTLFSLSTFSVDLTPLITERRTGT", "length": 110, "header": "tr|A0A287AVJ3-1|A0A287AVJ3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287AVJ3-1" }, "locus": { "chromosome": "17", "start_pos": 51189155, "end_pos": 51187550, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043704.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043704.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047887.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047887.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AVJ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AVJ3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AVJ3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AVJ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AVJ3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 110, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AVJ3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AVJ3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, 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Mechanistically, interacts with GNA15 and SOS2 to form a macromolecular signaling complex which has a high affinity for HRAS. Additionally, participates in signaling via other G-alpha proteins like GNA14, activating NF-kappa-B through Ras and ERK pathways. 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repeat protein 1 OS=Sus scrofa OX=9823 GN=TTC1 PE=1 SV=1 CANONICAL=A0A287AVJ6-1" }, "locus": { "chromosome": "16", "start_pos": 63514033, "end_pos": 63458851, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056410.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056410.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048159.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048159.1" } ] } }, { "isoform_ac": "A0A5G2QG69-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVJ6/entry#A0A5G2QG69-1", "sequence": { "sequence": "MGEKSENCMVSEDMFNGLKVTDTHEAECVSPPVANAKDDHTQSKLHKDVEARPQEDQEEEECFHDSSASFEEEPGPNKVENKSDDDVNSSELDEEYLIELEKNMPDEEKKRRREESSRLKEEGNEQFKKGDYIEAESSYTRALQMCPSCFQKDRSILFSNRAAARMKQDKKEMAISDCSKAIQLNPNYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRLPKQIEDRNERLKEEMLVLTLERAVWFKVGISFSKTKPFWFLENFPALKNANIVQLPTWCTPTSISDHEIHKSSCVSSESKQLKVLSSKPIPCQKQGNFVLKMESRVSLVSEKI", "length": 345, "header": "tr|A0A5G2QG69-1|A0A287AVJ6_PIG Computationally mapped isoform of Tetratricopeptide repeat protein 1 OS=Sus scrofa OX=9823 GN=TTC1 PE=1 SV=1 CANONICAL=A0A287AVJ6-1" }, "locus": { "chromosome": "16", "start_pos": 63514033, "end_pos": 63468119, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085547.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085547.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063747.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063747.1" } ] } }, { "isoform_ac": "A0A8W4FCB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVJ6/entry#A0A8W4FCB0-1", "sequence": { "sequence": "MGEKSENCMVSEDMFNGLKVTDTHEAECVSPPVANAKDDHTQSKLHKDVEARPQEDQEEEECFHDSSASFEEEPGPNKVENKSDDDVNSSELDEEYLIELEKNMPDEEKKRRREESSRLKEEGNEQFKKGDYIEAESSYTRALQMCPSCFQKDRSILFSNRAAARMKQDKKEMAISDCSKETT", "length": 183, "header": "tr|A0A8W4FCB0-1|A0A287AVJ6_PIG Computationally mapped isoform of Tetratricopeptide repeat protein 1 OS=Sus scrofa OX=9823 GN=TTC1 PE=1 SV=1 CANONICAL=A0A287AVJ6-1" }, "locus": { "chromosome": "16", "start_pos": 63514033, "end_pos": 63468625, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104024.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104024.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076898.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076898.1" } ] } }, { "isoform_ac": "A0A8W4FEH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVJ6/entry#A0A8W4FEH5-1", "sequence": { "sequence": "MGEKSENCMVSEDMFNGLKVTDTHEAECVSPPVANAKDDHTQSKLHKDVEARPQEDQEEEECFHDSSASFEEEPGPNKVENKSDDDVNSSELDEEYLIELEKNMPDEEKKRRREESSRLKEEGNEQFKKGDYIEAESSYTRALQMCPSCFQKDRSILFSNRAAARMKQDKKEMAISDCSKGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNR", "length": 224, "header": "tr|A0A8W4FEH5-1|A0A287AVJ6_PIG Computationally mapped isoform of Tetratricopeptide repeat protein 1 OS=Sus scrofa OX=9823 GN=TTC1 PE=1 SV=1 CANONICAL=A0A287AVJ6-1" }, "locus": { "chromosome": "16", "start_pos": 63514033, "end_pos": 63458851, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093247.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093247.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077261.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077261.1" } ] } }, { "isoform_ac": "A0A8W4FMZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVJ6/entry#A0A8W4FMZ6-1", "sequence": { "sequence": "MGEKSENCMVSEDMFNGLKVTDTHEAECVSPPVANAKDDHTQSKLHKDVEARPQEDQEEEECFHDSSASFEEEPGPNKVENKSDDDVNSSELDEEYLIELEKNMPDEEKKRRREESSRLKEEGNEQFKKGDYIEAESSYTRALQMCPSCFQKDRSILFSNRAAARMKQDKKEMAISDCSKAIQLNPNYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMVN", "length": 232, "header": "tr|A0A8W4FMZ6-1|A0A287AVJ6_PIG Computationally mapped isoform of Tetratricopeptide repeat protein 1 OS=Sus scrofa OX=9823 GN=TTC1 PE=1 SV=1 CANONICAL=A0A287AVJ6-1" }, "locus": { "chromosome": "16", "start_pos": 63514033, "end_pos": 63458976, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098103.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098103.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080575.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080575.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519063", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519063", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MWJ9-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "Ttc1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGEKSENCKVPEDLFNGLKVTDSQEVESASPQVSDPKVQHSQSKLLKDDGAHSQEDHGEEECFHDCSASFEEEQPGAQMVGDKATDESGSSELDEEYLTELEKNMPEEEKQKRREESTKLKEQGNEQFKRGDYIEAESSYSQALQMCPSCFQKDRSVLFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKLILEKDPSIHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNNR", "length": 294 }, "evidence": [ { "id": "A0A287AVJ6", "url": "https://omabrowser.org/oma/group/A0A287AVJ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BWM0-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "TTC1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEEVKDGHPPEELLDHLKLSDQKSTESTSSWASGPKDAQNLPNLASGDIPSSAKDPTTADECFHDCRDSFEMKEPVLDDEESSQNDENSTRKQTELDEEYLLELEKDMPEEEKQKRRKESTTLKEKGNEQFKKGDYGEAEDSYTKALQICPACFQKDRAVLFSNRAAAKMKQDKTEAALNDCSKAVELDPNYIRALLRRAELHEKTEKLDEALEDYKAILEKDPSVHQAREACMRLPRQIEERNEKLKKEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNR", "length": 296 }, "evidence": [ { "id": "A0A287AVJ6", "url": "https://omabrowser.org/oma/group/A0A287AVJ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3ZBR5-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "TTC1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGEKSNCRVPEDLFTGLKVTDPQEAECLHPPVSSGKEQHSQSELLKDVDAQPQEDQGEEECFHDASASFETEEPGADKLENKPEDDMNPSELDEEYLMELEKNMPDEEKKRRREESSRLKEEGNEQFKKGDYIEAESSYTRALQTCPSCFQKDRSVLFSNRAAARMKQEKKEMAISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNR", "length": 292 }, "evidence": [ { "id": "A0A287AVJ6", "url": "https://omabrowser.org/oma/group/A0A287AVJ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q66H09-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "Ttc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGKSEDCKVPEDLFNGLKVTDSQETESASSLVSDPKDQHVQSKPLKDAEAHPQEDHGEEECFHDCSASFEEEQPGAHMAGDKASDESSSELEEEYLIELEKNMPEEEKQKRREESAKLKEEGNEQFKRGDYVEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKEMAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSILETDPSVHQAREACVRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNR", "length": 292 }, "evidence": [ { "id": "A0A287AVJ6", "url": "https://omabrowser.org/oma/group/A0A287AVJ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91Z38-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "Ttc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEKSEDCKVPEDLFNGLKVADPQEGESASPMVSDPKGQHCQSKLPKAAEAHPQDDHVEEECFHDCSASFEEEQPGAHVAGSKASDDSSSELDEEYLIELEKNMPEEEKQKRREESAKLKEEGNERFKRGDYMEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINFVQNPNNNR", "length": 292 }, "evidence": [ { "id": "A0A287AVJ6", "url": "https://omabrowser.org/oma/group/A0A287AVJ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q99614-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "TTC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"gene_names": [ { "name": "FAM120C", "type": "recommended", "evidence": [ { "id": "A0A287AVK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVK7" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 120 member C", "type": "synonym", "evidence": [ { "id": "A0A287AVK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVK7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AVK7", "url": "https://www.uniprot.org/uniprotkb/A0A287AVK7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM120C", "url": "https://www.uniprot.org/uniprotkb/A0A287AVK7", "locus": { "chromosome": "X", "start_pos": 46777923, "end_pos": 46904579, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035822", "url": "https://www.ensembl.org/id/ENSSSCG00000035822" } ] } } ], "crossref": [ { "id": "A0A287AVK7", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AVK7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035822", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035822", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026784", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026784", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RYLPMNN", "url": "https://omabrowser.org/oma/group/RYLPMNN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15976", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15976", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15976:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15976:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27242", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27242", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AVK7", "url": "https://www.uniprot.org/uniprotkb/A0A287AVK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJH3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REF0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RME3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RME3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RME3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RME3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSSIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSSFLGFRNNRLGNPPLPRNQMGTISAGKPVFSHHVPQKMKYPPPFPVGPSSSLLFSPHALGESHAFSEDSMLQDSPFANWAVSYDSSASQFPNYLTSKSSPPLGPDSSHSSSSDGDEPNGASSDHITETLQQQPGWEDPNGDRGSWVQPIDAGVSDASLGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAIRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKIEKLDARGIQLAALFMSGVDTALFANDACGQPVPWEHCCPWIYFDGKLFQSKLIKAGRERVSLVELCDGQADLATKVEKMRQSILEGVNMNHPPPSALLPSPTFVPPMVPSLYPVSLYSRAMGSMPPPPQGRSRGFAGLHPIPPQGGKLEIAGMVVGQWAGSRSSRGRGSFGMQVVSVGGPGKGHGKEQTGKGSKGHKKGNKQSTSDGVSKSLEPHQGRSRLQVNGNNGTLIKEEKNDHLPAPSQCALSRDSSVCNNGNRYFPVKNGEKSRLQEQKLGTVVAQQKEE", "length": 952, "header": "tr|A0A287AVK7-1|A0A287AVK7_PIG Isoform 1 of Family with sequence similarity 120 member C OS=Sus scrofa OX=9823 GN=FAM120C PE=1 SV=1 CANONICAL=A0A287AVK7-1" }, "isoforms": [ { "isoform_ac": "A0A287AVK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVK7/entry#A0A287AVK7-1", "sequence": { "sequence": "MLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSSIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSSFLGFRNNRLGNPPLPRNQMGTISAGKPVFSHHVPQKMKYPPPFPVGPSSSLLFSPHALGESHAFSEDSMLQDSPFANWAVSYDSSASQFPNYLTSKSSPPLGPDSSHSSSSDGDEPNGASSDHITETLQQQPGWEDPNGDRGSWVQPIDAGVSDASLGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAIRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKIEKLDARGIQLAALFMSGVDTALFANDACGQPVPWEHCCPWIYFDGKLFQSKLIKAGRERVSLVELCDGQADLATKVEKMRQSILEGVNMNHPPPSALLPSPTFVPPMVPSLYPVSLYSRAMGSMPPPPQGRSRGFAGLHPIPPQGGKLEIAGMVVGQWAGSRSSRGRGSFGMQVVSVGGPGKGHGKEQTGKGSKGHKKGNKQSTSDGVSKSLEPHQGRSRLQVNGNNGTLIKEEKNDHLPAPSQCALSRDSSVCNNGNRYFPVKNGEKSRLQEQKLGTVVAQQKEE", "length": 952, "header": "tr|A0A287AVK7-1|A0A287AVK7_PIG Isoform 1 of Family with sequence similarity 120 member C OS=Sus scrofa OX=9823 GN=FAM120C PE=1 SV=1 CANONICAL=A0A287AVK7-1" }, "locus": { "chromosome": "X", "start_pos": 46903767, "end_pos": 46782582, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040652.2", "url": "https://www.ensembl.org/id/ENSSSCT00000040652.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047955.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047955.1" } ] } }, { "isoform_ac": "A0A5G2QJH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVK7/entry#A0A5G2QJH3-1", "sequence": { "sequence": "MLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSSIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSSFLGFRNNRLGNPPLPRNQMGTISAGKPVFSHHVPQKMKYPPPFPVGPSSSLLFSPHALGESHAFSEDSMLQDSPFANWAVSYDSSASQFPNYLTSKSSPPLGPDSSHSSSSDGDEPNGASSDHITETLQQQPGWEDPNGDRGSWVQPIDAGVSDASLGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAIRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKADLATKVEKMRQSILEGVNMNHPPPSALLPSPTFVPPMVPSLYPVSLYSRAMGSMPPPPQGRSRGFAGLHPIPPQGGKLEIAGMVVGQWAGSRSSRGRGSFGMQVVSVGGPGKGHGKEQTGKGSKGHKKGNKQSTSDGVSKSLEPHQGRSRLQVNGNNGTLIKEEKNDHLPAPSQCALSRDSSVCNNGNRYFPVKNGEKSRLQEQKLGTVVAQQKEE", "length": 882, "header": "tr|A0A5G2QJH3-1|A0A287AVK7_PIG Computationally mapped isoform of Family with sequence similarity 120 member C OS=Sus scrofa OX=9823 GN=FAM120C PE=1 SV=1 CANONICAL=A0A287AVK7-1" }, "locus": { "chromosome": "X", "start_pos": 46903767, "end_pos": 46782582, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076451.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076451.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062190.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062190.1" } ] } }, { "isoform_ac": "A0A5G2REF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVK7/entry#A0A5G2REF0-1", "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQHQHRQLPPTAVLAPGAPRAARGSAPLQPPLPPAAFGAYSGGAGPTRHHHPAHHFHHHGQAHPGLHPPPPPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSSIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSSFLGFRNNRLGNPPLPRNQMGTISAGKPVFSHHVPQKMKYPPPFPVGPSSSLLFSPHALGESHAFSEDSMLQDSPFANWAVSYDSSASQFPNYLTSKSSPPLGPDSSHSSSSDGDEPNGASSDHITETLQQQPGWEDPNGDRGSWVQPIDAGVSDASLGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAIRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKVSIQSHPKEENWRLPGWLANGLAADPPGAGAPLACKWFLSVGQGKGMERNRLVKDPKDIKKEINKALQMEFLNPWSLIKVGPAYR", "length": 894, "header": "tr|A0A5G2REF0-1|A0A287AVK7_PIG Computationally mapped isoform of Family with sequence similarity 120 member C OS=Sus scrofa OX=9823 GN=FAM120C PE=1 SV=1 CANONICAL=A0A287AVK7-1" }, "locus": { "chromosome": "X", "start_pos": 46904201, "end_pos": 46782773, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088476.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088476.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072996.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072996.1" } ] } }, { "isoform_ac": "A0A5G2RME3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVK7/entry#A0A5G2RME3-1", "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQHQHRQLPPTAVLAPGAPRAARGSAPLQPPLPPAAFGAYSGGAGPTRHHHPAHHFHHHGQAHPGLHPPPPPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKQAPML", "length": 237, "header": "tr|A0A5G2RME3-1|A0A287AVK7_PIG Computationally mapped isoform of Family with sequence similarity 120 member C OS=Sus scrofa OX=9823 GN=FAM120C PE=1 SV=1 CANONICAL=A0A287AVK7-1" }, "locus": { "chromosome": "X", "start_pos": 46904201, "end_pos": 46895283, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068120.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068120.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073739.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073739.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJH3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A052-1", "protein_name": "Family with sequence similarity 120 member C", "gene_name": "Fam120c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLIRPAPAPLPQLESEYHREDEATWLPEVEGRGFTPFEEVKKSSGGEREKRSDYDLSSLLSSQPLLSLVSLTSALHPHPVCGLLPSPPTFPRPSRSRTLSPPPSPLPPAECARARLQLRAGIAAWLACAAAVSSAHGGSMGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPAALAPGAPRIARGSAPLPPPLPPAAFGAYSGGAGPTRHHHPAHHFHHHGQAPPGLHPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSSIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSFLGFRNNRLGNPPLPRNQMGPISPGKPMFSRQMPQKMKYPPPFPMGPNSSLLFSHSVGESHAFSEDAMLQDSSFANWAVSYDSNTSQFPNCLTSKTSPPLGPDSSHSSSSDGDEANGAGSEQVTEAVQQQPGWEDPSGDRGAWVQPVDAGASETNATESEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAIRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKIEKLDARGIQLAALFMSGVDTALFANDACGQPVPWEHCCPWIYFDGKLFQSKLIKAGRERVSLVELCDGQADLASKVEKMRQSILEGVNMNHPPPSALLPSPTFVPPMVPSLYPVSLYSRAMGSFPPPPQARSRGFAGLHPIPPQGGKLEIAGMVVGQWAGSRSSRSRGSFGMQVVSVGGPGKGHGKEQAGRGSKGHKKGNKQGSSDGISKSVELHPSRARSQVNGNNGTLIVEEKSDPLPAPPQCALSRDSTVCNSSDDHCLPVKNGEKNHVQEQELEAVAQQKEE", "length": 1229 }, "evidence": [ { "id": "A0A287AVK7", "url": "https://omabrowser.org/oma/group/A0A287AVK7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AAA9SHG0-1", "protein_name": "Family with sequence similarity 120 member C", "gene_name": "FAM120C", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQHQHRQLPPTAALAPGAPRAARGSAPQQPPFPPAALGAYSGGAGPTRHHHPAHHFHHHGQAHPGLHPPPPPPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSSIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSFLGFRNNRLGNPPIPRNQMGTLSAGKPMFSHHVPQKMKYPPPFPVRPNSSLLFSPHALGESHAFSEDSMLQDSPFANWAISYDSSASQFPNYLTSKASTPLGPDSSHSSSSDGDEPEGASSDRITETLQQQPGWEDPNSDRGSWVEPIDAGVSNASLGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAAILFRSARQYVYGVLFSLAETQRKMERLAIRRRLPVEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKIEKLDARGIQLAALFMSGVDTALFANDACGQPVPWEHCCPWIYFDGKLFQSKLIKAGRERVSLVELCDGQADLATKVEKMRQSILEGVNMNHPPPSLLPSPTFVPPMVPSLYPVSLYPRAMGPVPPPPQGRSRGFAGLHPIPPQGGKLEIAGMVVGQWAGSRSSRGRGSFGMQVVSVGGPGKGHGKEQTGRGAKGHKKGNKQSSSDGVSKSLEPQQGRSSSQVDGNSGTLIKEEKNDHLPSPSQSALSRDNSVCNNGNRYFPGKNGEKNHLQEQKLGTVTQQKEE", "length": 1094 }, "evidence": [ { "id": "A0A287AVK7", "url": "https://omabrowser.org/oma/group/A0A287AVK7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E9QJ40-1", "protein_name": "Constitutive coactivator of PPAR-gamma-like protein 2", "gene_name": "fam120c", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVQGFQEYLEKRCPGAAVPVDLLKLARTAGRQPPHHHPHHHHHPHHPSSLPPPPPPARILVDADSGLQRLYGGYQTDWVCGGEWNAMLGYLAALSQACLYQGGLELVVVFNGTLGKDRWPEWARRAQGQRQTAQLIVNHVGSKATPPPRAWFLPPACLSHCVRLAMFRFRVRVVQTLEDHHQEVLSLYRDYGFQGLIAQDSEFALCNVPAYFSSHALKLSWNGKNLTTHQYLLSEAARQLGLKTQHLPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCEVVIKAVSEYVASIKDLGNLDSVAKDVFKQSQSRTEDKIERFKKAVEYFSAASKPRPLSMGPSPYLFPGFGPSPFAGPPGHVGAVQPLKAQFGPPQVSGVKVPYPGGLYGPGPATGPALLCQNPTQPLQDCNDSLVGKMGFADWSAPYDSSQGGSRQPNHHTAAPTGPSPSSSSSSDGEEQNDTSANHLADKSTRWEDPSGRSGSGSGDGHHGNGSGPSIPSLLSMPTRSHMDITTPPLPQVSAEVLRVAEHRHRRGLMYPQIYHILTKGEMKMPVCIEDECNPDLPPASLLFRSARQYAYGVLFSLAETQRRLERLAMRKRSPVDVPPVIVKEWCASKAKSALTPELVPALCFREWTCPNLRRLWLGRASEDRSRRTRAFLACMRSDCPALLNPTCVPSHLLLMCCVLRYMMQWPGGRILQRHELDAFLAQAVSNQLYEPDQLQELKVEKVDNRGVQLASLFMSGVDTALFVNDVCGQPLPWDHCCPWGFFDGKLFQSKLAKATRDRASLLDMCEGQEELVSRVEKMRQAILEGINLSRPPPPPPPLPPPAFLPPAMVPPFYPMHPLYPPRPLGSMPPPPPHHHHQHRPRAFPGIQSIPPQGGKLEIAGMVVGQWAGNKPIRGKGGFNMQVVSVGGKGRGKDLTVKGRGGKKVITNRTQTLSSSPPSSSPPKLMEDTKSVGRPAEGTGPASQQLNGSSSGSATGQALDLPPLAQPIQCALASRDNQSGDGVEVEAPCCLDDCPSDGALQKEE", "length": 1047 }, "evidence": [ { "id": "A0A287AVK7", "url": "https://omabrowser.org/oma/group/A0A287AVK7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8C3F2-1", "protein_name": "Constitutive coactivator of PPAR-gamma-like protein 2", "gene_name": "Fam120c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPAALAPGAPRITRGSAPLPPPPLPPAAFGAYSGGAGPSRHHHPAHHFHHHGQAPPGLHPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSSIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSFLGFRNNRLGNPPLPRNQMGPISPGKPMFSRQVPQKMKYPPPFPMGPNSSLLFSHSVGESHAFSEDAMLQDNSFANWAVSYDSNTSQFPNCLTSKTSPPLGPDSSHSSSSDGDEANGAGSEQITEAVQQQPGWEDPNGDRGAWGQPADAGVSETTVAESEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAIRRRLPMEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDQLQELKIEKLDARGIQLAALFMSGVDTALFANDACGQPVPWEHCCPWIYFDGKLFQSKLIKAGRERVSLVELCDGQADLASKVEKMRQSILEGVNMNHPPPSALLPSPTFVPPMVPSLYPVSLYSRAMGSFPPPPQARSRGFAGLHPIPPQGGKLEIAGMVVGQWAGSRSSRSRGSFGMQVVSVGGPGKGHGKEQAGRGSKGHKKGNKQGSSDVISKAVELHQSRARSQVNGNNGTLIVEEKSDPLPAPSQCALSRDSNECNNSDDHCLPVKNGEKNHVPEQELEAVAQQKEE", "length": 1091 }, "evidence": [ { "id": "A0A287AVK7", "url": "https://omabrowser.org/oma/group/A0A287AVK7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NX05-1", "protein_name": "Constitutive coactivator of PPAR-gamma-like protein 2", "gene_name": "FAM120C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPTAALAPGAPRAARGSVPLQPPLPPAALGAYSGGAGPTRHHHPAHHFHHHGQAQPGLHPPLPPPPPPQLPGARVLVDAGSALPRLYGGYQTDWVCGGQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLLAHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLGNHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSSIKDPSNLDVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSFLGFRNNRLGNPPLPRNQVGTISAGKPMFSHQVPQKVKYPPPFPVGPNSSLLFSSHALGESHAFSEDPMLQNSPFANWAVSYDSSASQFPNYLPSKASPPLGPDSSHSSSSDGDEPNGASSDHITEAFHHQPEWGNPNRDRGSWAQPVDTGVSEASLGDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVLFSLAETQRKMERLAMRRRLPVEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNLKKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRILHRHELDTFLAQAVSTQLYEPDRLQELKIEKLDARGIQLAALFMSGVDTALFANDACGQPVPWEHCCPWIYFDGKLFQSKLIKAGRERVSLVELCDGQADLATKVEKMRQSILEGVNMNHPPPSALLPSPTFVPPMVPSLYPVSLYSRAMGSMPLPPQGRSRGFAGLHPIPPQGGKLEIAGMVVGQWAGSRSSRGRGSFGMQVVSVGGPGKGHGKEQTGRGSKGHKKGNKQGSSDGVSKSLELHQGRSRSQVNGNSGALIKEEKSDHRLPAPSQCALSRDSNECNNGNRYLPMNNREKNHLQEQKLETVAQRKED", "length": 1096 }, "evidence": [ { "id": "A0A287AVK7", "url": "https://omabrowser.org/oma/group/A0A287AVK7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVK7", "url": "https://www.uniprot.org/uniprotkb/A0A287AVK7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 893, "end_pos": 895, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AVK7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 952, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AVK7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AVK7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 893, "end_pos": 895 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AVL3-1", "uniprot_ac": "A0A287AVL3", "uniprot_id": "A0A287AVL3_PIG", "mass": { "chemical_mass": 88307.0, "monoisotopic_mass": 88307.0 }, "refseq": { "ac": "XP_001927220", "name": "tetratricopeptide repeat protein 14 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927220" }, "gene_names": [ { "name": "TTC14", "type": "recommended", "evidence": [ { "id": "A0A287AVL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL3" } ] }, { "name": "TTC14", "type": "synonym", "evidence": [ { "id": "XP_001927220", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927220" } ] } ], "protein_names": [ { "name": "Tetratricopeptide repeat domain 14", "type": "synonym", "evidence": [ { "id": "A0A287AVL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL3/entry#names_and_taxonomy" } ] }, { "name": "tetratricopeptide repeat protein 14 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001927220", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927220" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AVL3", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TTC14", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL3", "locus": { "chromosome": "13", "start_pos": 118638223, "end_pos": 118614424, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011767", "url": "https://www.ensembl.org/id/ENSSSCG00000011767" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011767", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011767", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00164", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00164", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100151821", "url": "https://www.ncbi.nlm.nih.gov/gene/100151821", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100151821", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151821", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YQKTQVK", "url": "https://omabrowser.org/oma/group/YQKTQVK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AVL3", "url": "https://www.orthodb.org/?gene=A0A287AVL3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23184", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23184", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23184:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23184:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13414", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13414", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001927220", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927220", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AVL3", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJS1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJS1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRDLLRQSLNFHGPSLLSLLRSEQQDNPHFRSLLGSVAEPPRGPPPQQQLQGRKEKKVDNIEIQKFISKKADLLFALSWKSGTPTTSEINEDNEDHYAVMPPLEQFMEIPGMDRRELFFRDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDISHLEITALCPLRDVPSLSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPSHLSGIKLGVISSEELPLYYRRSIELNSNSLESYENIMQSSLGFVNPGVVEFLLGKLGIDESNPPSLMRGLQSKNFSEDDFASALRKKQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDGTFKDAEDALQKLHKYMQKSLELREKQAEKEEKQKTKKIETSAEKLRKLLKEEKRLKKKRRKSTSSSSSVSSADESVSSSSSSSSGHKRHKKHKRNRSESSRSSKRHSAKASSNQIDQSKKDECFPVPANTSASFLNQKQEVEKLLEKQDRLPYQKKQVKEKDRCPFSSSSVEIPDDFGGRSEYPRDFCNSYKTQAGSSKTEKPYKSERHLSSRRDSSDSFYRNSEEKIKIYGYRRFEKDIEGRKEQYRRWETGSVKYSTSPASSEYSSKSVEKYKKYTYSGSRDFSRHEQRYELNKNQGEYEREGNYEEDAKTEVPEEEGLNSKEHSESGVKKNLPQNLLNIFNQIAAFEKEKGSKPKN", "length": 772, "header": "tr|A0A287AVL3-1|A0A287AVL3_PIG Isoform 1 of Tetratricopeptide repeat domain 14 OS=Sus scrofa OX=9823 GN=TTC14 PE=4 SV=1 CANONICAL=A0A287AVL3-1" }, "isoforms": [ { "isoform_ac": "A0A287AVL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL3/entry#A0A287AVL3-1", "sequence": { "sequence": "MDRDLLRQSLNFHGPSLLSLLRSEQQDNPHFRSLLGSVAEPPRGPPPQQQLQGRKEKKVDNIEIQKFISKKADLLFALSWKSGTPTTSEINEDNEDHYAVMPPLEQFMEIPGMDRRELFFRDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDISHLEITALCPLRDVPSLSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPSHLSGIKLGVISSEELPLYYRRSIELNSNSLESYENIMQSSLGFVNPGVVEFLLGKLGIDESNPPSLMRGLQSKNFSEDDFASALRKKQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDGTFKDAEDALQKLHKYMQKSLELREKQAEKEEKQKTKKIETSAEKLRKLLKEEKRLKKKRRKSTSSSSSVSSADESVSSSSSSSSGHKRHKKHKRNRSESSRSSKRHSAKASSNQIDQSKKDECFPVPANTSASFLNQKQEVEKLLEKQDRLPYQKKQVKEKDRCPFSSSSVEIPDDFGGRSEYPRDFCNSYKTQAGSSKTEKPYKSERHLSSRRDSSDSFYRNSEEKIKIYGYRRFEKDIEGRKEQYRRWETGSVKYSTSPASSEYSSKSVEKYKKYTYSGSRDFSRHEQRYELNKNQGEYEREGNYEEDAKTEVPEEEGLNSKEHSESGVKKNLPQNLLNIFNQIAAFEKEKGSKPKN", "length": 772, "header": "tr|A0A287AVL3-1|A0A287AVL3_PIG Isoform 1 of Tetratricopeptide repeat domain 14 OS=Sus scrofa OX=9823 GN=TTC14 PE=4 SV=1 CANONICAL=A0A287AVL3-1" }, "locus": { "chromosome": "13", "start_pos": 118623614, "end_pos": 118614583, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060925.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060925.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047907.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047907.1" } ] } }, { "isoform_ac": "A0A5G2RJS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL3/entry#A0A5G2RJS1-1", "sequence": { "sequence": "MDRDLLRQSLNFHGPSLLSLLRSEQQDNPHFRSLLGSVAEPPRGPPPQQQLQGRKEKKVDNIEIQKFISKKADLLFALSWKSGTPTTSEINEDNEDHYAVMPPLEQFMEIPGMDRRELFFRDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDISHLEITALCPLRDVPSLSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPSHLSGIKLGVISSEELPLYYRRSIELNSNSLESYENIMQSSLGFVNPGVVEFLLGKLGIDESNPPSLMRGLQSKNFSEDDFASALRKKQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDGTFKDAEDALQKLHKYMQVILYFLLEI", "length": 439, "header": "tr|A0A5G2RJS1-1|A0A287AVL3_PIG Computationally mapped isoform of Tetratricopeptide repeat domain 14 OS=Sus scrofa OX=9823 GN=TTC14 PE=4 SV=1 CANONICAL=A0A287AVL3-1" }, "locus": { "chromosome": "13", "start_pos": 118620875, "end_pos": 118614583, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079276.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079276.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072184.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072184.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RJS1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJS1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100151821", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151821", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZM05-1", "protein_name": "Tetratricopeptide repeat domain 14", "gene_name": "Ttc14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"A0A287AVL3", "url": "https://omabrowser.org/oma/group/A0A287AVL3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVL3", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" }, { "start_pos": 508, "end_pos": 510, "annotation": "n_glycosylation_sequon" }, { "start_pos": 542, "end_pos": 544, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AVL3", 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"A0A287AVL5-1", "uniprot_ac": "A0A287AVL5", "uniprot_id": "A0A287AVL5_PIG", "mass": { "chemical_mass": 31318.0, "monoisotopic_mass": 31318.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A287AVL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AVL5", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL5", "locus": {} } ], "crossref": [ { "id": "A0A287AVL5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AVL5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031239", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031239", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03705", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03705", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR004161", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004161", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054696", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054696", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR44830", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44830", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44830:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44830:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03144", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03144", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22594", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22594", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AVL5", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGFTEPPCSQKRYEEIVKEVSTYIKKVGCSTDMVEFVPISGWNGDNMLEPSANMPWFKGWKFAHKDGNASGTTLLEALDCILPPTLANDNPLCLPLHDAYKTMETGILKPGMVVTFAPVNITTEVKSVEMHHEALSEALPWDSVGFNKENMSVKDICRGGVAGDSKNDPWMETAGFTAQVIILNHPGQIGVGYAPVLDCHTAHIACKFAELKEKIDCCSGKKLEDGPKFLKSGDAAIVNMVPGKPMCVENFFDYPPLGCFAVRDMRQTVAVAGASKVTKSAQKAQKAK", "length": 288, "header": "tr|A0A287AVL5-1|A0A287AVL5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287AVL5-1" }, "isoforms": [ { "isoform_ac": "A0A287AVL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL5/entry#A0A287AVL5-1", "sequence": { "sequence": "MGFTEPPCSQKRYEEIVKEVSTYIKKVGCSTDMVEFVPISGWNGDNMLEPSANMPWFKGWKFAHKDGNASGTTLLEALDCILPPTLANDNPLCLPLHDAYKTMETGILKPGMVVTFAPVNITTEVKSVEMHHEALSEALPWDSVGFNKENMSVKDICRGGVAGDSKNDPWMETAGFTAQVIILNHPGQIGVGYAPVLDCHTAHIACKFAELKEKIDCCSGKKLEDGPKFLKSGDAAIVNMVPGKPMCVENFFDYPPLGCFAVRDMRQTVAVAGASKVTKSAQKAQKAK", "length": 288, "header": "tr|A0A287AVL5-1|A0A287AVL5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287AVL5-1" }, "locus": { "chromosome": "15", "start_pos": 24708998, "end_pos": 24707849, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040471.2", "url": "https://www.ensembl.org/id/ENSSSCT00000040471.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047954.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047954.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVL5", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVL5", "url": "https://www.uniprot.org/uniprotkb/A0A287AVL5" } ], "pmid": "" }, { "name": "translation elongation factor activity", "id": "GO:0003746", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003746", "evidence": [ { "database": "UniProtKB", "id": 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"recommended", "evidence": [ { "id": "A0A287AVT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1/entry#names_and_taxonomy" } ] }, { "name": "2.1.1.4", "type": "synonym", "evidence": [ { "id": "A0A287AVT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1/entry#names_and_taxonomy" } ] }, { "name": "Hydroxyindole O-methyltransferase", "type": "synonym", "evidence": [ { "id": "A0A287AVT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Catalyzes the transfer of a methyl group onto N-acetylserotonin, producing melatonin (N-acetyl-5-methoxytryptamine).", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1#function" }, { "database": "UniProtKB", "id": "ARBA00037645", "url": "https://www.uniprot.org/uniprotkb/ARBA00037645#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AVT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASMT", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1", "locus": {} } ], "crossref": [ { "id": "A0A287AVT1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AVT1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032659", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032659", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001077", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001077", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012967", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012967", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FWPYVFG", "url": "https://omabrowser.org/oma/group/FWPYVFG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AVT1", "url": "https://www.orthodb.org/?gene=A0A287AVT1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43712", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43712", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43712:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43712:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00891", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00891", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08100", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08100", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-209931", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209931", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AVT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSPHDQAYRLLKEYSNGFMVSQVLFAACELGVFDLLAEAPGPLGSAAVAAHLGISCRGTEQLLDACVLLKLLHVEMRRGEAVYANTELASAYLAGTSPTSQQHMLLYVARTTYLCWAHLAEAVREGKNQYLKAFGVPSEELFSAIYRSEGERLQFLRGLGDVWSVEGRGVLAAFDLSPFPLVCDLGGCSGALAKECTSLYAGCHVTVFDMPDVVQTAKRHFSFPEDGRISFREGDFFKDPLPEADLYLLARVLHDWTDDKCSRLLARIHGACRTGGGILVIESLLDADGRGPLTTQLYSLNMLVQTEGRERTPAQYLALLAPAGFHDIQCRRTGGTYDAILARK", "length": 345, "header": "tr|A0A287AVT1-1|A0A287AVT1_PIG Isoform 1 of Acetylserotonin O-methyltransferase OS=Sus scrofa OX=9823 GN=ASMT PE=4 SV=1 CANONICAL=A0A287AVT1-1" }, "isoforms": [ { "isoform_ac": "A0A287AVT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1/entry#A0A287AVT1-1", "sequence": { "sequence": "MGSPHDQAYRLLKEYSNGFMVSQVLFAACELGVFDLLAEAPGPLGSAAVAAHLGISCRGTEQLLDACVLLKLLHVEMRRGEAVYANTELASAYLAGTSPTSQQHMLLYVARTTYLCWAHLAEAVREGKNQYLKAFGVPSEELFSAIYRSEGERLQFLRGLGDVWSVEGRGVLAAFDLSPFPLVCDLGGCSGALAKECTSLYAGCHVTVFDMPDVVQTAKRHFSFPEDGRISFREGDFFKDPLPEADLYLLARVLHDWTDDKCSRLLARIHGACRTGGGILVIESLLDADGRGPLTTQLYSLNMLVQTEGRERTPAQYLALLAPAGFHDIQCRRTGGTYDAILARK", "length": 345, "header": "tr|A0A287AVT1-1|A0A287AVT1_PIG Isoform 1 of Acetylserotonin O-methyltransferase OS=Sus scrofa OX=9823 GN=ASMT PE=4 SV=1 CANONICAL=A0A287AVT1-1" }, "locus": { "chromosome": "AEMK02000569.1", "start_pos": 943682, "end_pos": 916352, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057859.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057859.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048230.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048230.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-209931", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209931", "resource": "Reactome", "description": "Serotonin and melatonin biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "B3GSH5-1", "protein_name": "Acetylserotonin O-methyltransferase", "gene_name": "Asmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPGREGELDRDFRVLMSLAHGFMVSQVLFAALDLGIFDLAAQGPVAAEAVAQTGGWSPRGTQLLMDACTRLGLLRGAGDGSYTNSALSSTFLVSGSPQSQRCMLLYLAGTTYGCWAHLAAGVREGRNQYSRAVGISAEDPFSAIYRSEPERLLFMRGLQETWSLCGGRVLTAFDLSRFRVICDLGGGSGALAQEAARLYPGSSVCVFDLPDVIAAARTHFLSPGARPSVRFVAGDFFRSRLPRADLFILARVLHDWADGACVELLGRLHRACRPGGALLLVEAVLAKGGAGPLRSLLLSLNMMLQAEGWERQASDYRNLATRAGFPRLQLRRPGGPYHAMLARRGPRPGIITGVGSNTTGTGSFVTGIRRDVPGARSDAAGTGSGTGNTGSGIMLQGETLESEVSAPQAGSDVGGAGNEPRSGTLKQGDWK", "length": 432 }, "evidence": [ { "id": "A0A287AVT1", "url": "https://omabrowser.org/oma/group/A0A287AVT1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3KU66-1", "protein_name": "Acetylserotonin O-methyltransferase", "gene_name": "Asmt", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRGRSASARQERDFRALMDLAHGFMASQVLFAGCALRVFDAAALGPVDAAALARSSGLSPRGTRLLLDACAGLGLLRRRRGAGPRGPAYTNSPLASTFLVAGSPLSQRSLLLYLAGTTYLCWGHLADGVREGRSQYARAVGVDADDPFTAIYRSEAERLLFMRGLQETWSLCGGRVLTAFDLSPFRVICDLGGGSGALARMAARLYPGSEVTVFETPDVVAAARAHFPPPADEDGAEPRVRFLSGDFFRSPLPPADLYVLARVLHDWADAACVELLRRVRGALRPGGAVLLVESVLSPGGAGPTRTLLLSLTMLLQARGRERTEAEYRALTARAGFSRLRLRRPRGPYHAMMAARGGGAGARSDGGGGDATSQTGSGTGSEVGAQD", "length": 387 }, "evidence": [ { "id": "A0A287AVT1", "url": "https://omabrowser.org/oma/group/A0A287AVT1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P10950-1", "protein_name": "Acetylserotonin O-methyltransferase", "gene_name": "ASMT", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MCSQEGEGYSLLKEYANGFMVSQVLFAACELGVFELLAEALEPLDSAAVSSHLGSSPQGTELLLNTCVSLKLLQADVRGGKAVYANTELASTYLVRGSPRSQRDMLLYAGRTAYVCWRHLAEAVREGRNQYLKAFGIPSEELFSAIYRSEDERLQFMQGLQDVWRLEGATVLAAFDLSPFPLICDLGGGSGALAKACVSLYPGCRAIVFDIPGVVQIAKRHFSASEDERISFHEGDFFKDALPEADLYILARVLHDWTDAKCSHLLQRVYRACRTGGGILVIESLLDTDGRGPLTTLLYSLNMLVQTEGRERTPAEYRALLGPAGFRDVRCRRTGGTYDAVLARK", "length": 345 }, "evidence": [ { "id": "A0A287AVT1", "url": "https://omabrowser.org/oma/group/A0A287AVT1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1" } ], "pmid": "" }, { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1" } ], "pmid": "" }, { "name": "melatonin biosynthetic process", "id": "GO:0030187", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030187", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1" } ], "pmid": "" }, { "name": "acetylserotonin O-methyltransferase activity", "id": "GO:0017096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017096", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVT1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-209821", "name": "Methylation of N-acetyl-5-HT to form melatonin", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-209793" ], "output_participant_list": [ "R-ALL-209934" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-209821", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209821" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-209793", "participant_name": "Ac5HT [cytosol]", "crossref": [ { "id": "17697", "database": "ChEBI", "url": "" }, { "id": "C00978", "database": "COMPOUND", "url": "" }, { "id": "5451", "database": "Guide to Pharmacology - Ligands", "url": "" }, { "id": "ZINC000000066104", "database": "ZINC", "url": "" }, { "id": "HMDB0001238", "database": "HMDB Metabolite", "url": "" } ] }, { "participant_id": "R-ALL-209934", "participant_name": "MLT [cytosol]", "crossref": [ { "id": "C01598", "database": "COMPOUND", "url": "" }, { "id": "ZINC000000057060", "database": "ZINC", "url": "" }, { "id": "16796", "database": "ChEBI", "url": "" }, { "id": "HMDB0001389", "database": "HMDB Metabolite", "url": "" }, { "id": "224", "database": "Guide to Pharmacology - Ligands", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AVT1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 345, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AVT1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AVT1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AVT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVT1" }, { "id": "PF00891", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00891" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "O-methyltransferase C-terminal", "eco_id": "ECO_0000259", "start_pos": 117, "end_pos": 326, "start_aa": "Trp", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AVV0-1", "uniprot_ac": "A0A287AVV0", "uniprot_id": "A0A287AVV0_PIG", "mass": { "chemical_mass": 50807.0, "monoisotopic_mass": 50807.0 }, "refseq": {}, "gene_names": [ { "name": "RMND1", "type": "recommended", "evidence": [ { "id": "A0A287AVV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVV0" } ] } ], "protein_names": [ { "name": "Required for meiotic nuclear division 1 homolog", "type": "synonym", "evidence": [ { "id": "A0A287AVV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AVV0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AVV0", "url": "https://www.uniprot.org/uniprotkb/A0A287AVV0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RMND1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVV0", "locus": { "chromosome": "1", "start_pos": 14855069, "end_pos": 14795674, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004089", "url": "https://www.ensembl.org/id/ENSSSCG00000004089" } ] } } ], "crossref": [ { "id": "A0A287AVV0", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AVV0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004089", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004089", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156656", "url": "https://www.ncbi.nlm.nih.gov/gene/100156656", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051624", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051624", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156656", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156656", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KLGMWEA", "url": "https://omabrowser.org/oma/group/KLGMWEA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QJM3", "url": "https://www.orthodb.org/?gene=A0A5G2QJM3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16255", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16255", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16255:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16255:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AVV0", "url": "https://www.uniprot.org/uniprotkb/A0A287AVV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVV0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJM3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7W2", "url": "https://www.uniprot.org/uniprotkb/F1S7W2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7W2-1", "url": "https://www.uniprot.org/uniprotkb/F1S7W2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAGLLRALAGSHCILSKTCQCQRLVHRTLKPLKELETTCSSLTESQSLDMFFPDTAAGGLNKSRILEMNQKIASTSVLSPLNAAHFPTGSLFGTHQKVTHRPNLLGSKRFVKILGRHSSSVSTETFPKQDFPKIKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLGNLSQDLAAHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMQVLEKHEIQPYEVALVHWENEELNYIKTEGQSKLHRGEIRLNSELDIDDAILEKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKMGELFALRHRINLSSDFLITPDFYWDRENLEELYDKTCRFLSITRRVKVMNEKLQHCMELTDLMRNHLTEKRTLRLEWMIVILITIEVGNFRENNLAEKSMTLS", "length": 447, "header": "tr|A0A287AVV0-1|A0A287AVV0_PIG Isoform 1 of Required for meiotic nuclear division 1 homolog OS=Sus scrofa OX=9823 GN=RMND1 PE=1 SV=2 CANONICAL=A0A287AVV0-1" }, "isoforms": [ { "isoform_ac": "A0A287AVV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVV0/entry#A0A287AVV0-1", "sequence": { "sequence": "MPAGLLRALAGSHCILSKTCQCQRLVHRTLKPLKELETTCSSLTESQSLDMFFPDTAAGGLNKSRILEMNQKIASTSVLSPLNAAHFPTGSLFGTHQKVTHRPNLLGSKRFVKILGRHSSSVSTETFPKQDFPKIKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLGNLSQDLAAHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMQVLEKHEIQPYEVALVHWENEELNYIKTEGQSKLHRGEIRLNSELDIDDAILEKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKMGELFALRHRINLSSDFLITPDFYWDRENLEELYDKTCRFLSITRRVKVMNEKLQHCMELTDLMRNHLTEKRTLRLEWMIVILITIEVGNFRENNLAEKSMTLS", "length": 447, "header": "tr|A0A287AVV0-1|A0A287AVV0_PIG Isoform 1 of Required for meiotic nuclear division 1 homolog OS=Sus scrofa OX=9823 GN=RMND1 PE=1 SV=2 CANONICAL=A0A287AVV0-1" }, "locus": { "chromosome": "1", "start_pos": 14851226, "end_pos": 14800971, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066077.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066077.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048265.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048265.2" } ] } }, { "isoform_ac": "A0A5G2QJM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVV0/entry#A0A5G2QJM3-1", "sequence": { "sequence": "MPAGLLRALAGSHCILSKTCQCQRLVHRTLKPLKELETTCSSLTESQSLDMFFPDTAAGGLNKSRILEMNQKIASTSVLSPLNAAHFPTGSLFGTHQKVTHRPNLLGSKRFVKILGRHSSSVSTETFPKQDFPKIKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLGNLSQDLAAHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMQVLEKHEIQPYEVALVHWENEELNYIKTEGQSKLHRGEIRLNSELDIDDAILEKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKMGELFALRHRINLSSDFLITPDFYWDRENLEELYDKTCRFLSITRRVKVMNEKLQHCMELTDLMRNHLTEKRTLRLEWMIVILITIEVMFELGRVFFVIK", "length": 443, "header": "tr|A0A5G2QJM3-1|A0A287AVV0_PIG Computationally mapped isoform of Required for meiotic nuclear division 1 homolog OS=Sus scrofa OX=9823 GN=RMND1 PE=1 SV=1 CANONICAL=A0A287AVV0-1" }, "locus": { "chromosome": "1", "start_pos": 14851845, "end_pos": 14800971, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072823.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072823.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062247.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062247.1" } ] } }, { "isoform_ac": "F1S7W2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVV0/entry#F1S7W2-1", "sequence": { "sequence": "MPAGLLRALAGSHCILSKTCQCQRLVHRTLKPLKELETTCSSLTESQSLDMFFPDTAAGGLNKSRILEMNQKIASTSVLSPLNAAHFPTGSLFGTHQKVTHRPNLLGSKRFVKILGRHSSSVSTETFPKQDFPKIKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLGNLSQDLAAHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMQVLEKHEIQPYEVALVHWENEELNYIKTEGQSKLHRGEIRLNSELDIDDAILEKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEVMNEKLQHCMELTDLMRNHLTEKRTLRLEWMIVILITIEVMFELGRVFF", "length": 374, "header": "tr|F1S7W2-1|A0A287AVV0_PIG Computationally mapped isoform of Required for meiotic nuclear division 1 homolog OS=Sus scrofa OX=9823 GN=RMND1 PE=1 SV=3 CANONICAL=A0A287AVV0-1" }, "locus": { "chromosome": "1", "start_pos": 14851836, "end_pos": 14800971, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004520.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004520.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004418.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004418.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJM3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156656", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156656", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MPE4-1", "protein_name": "Required for meiotic nuclear division protein 1 homolog isoform X1", "gene_name": "Rmnd1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPARLLQTLASLSSASLKAYQCKRLARLPLKPLTESESTACRKSLKIQQCLDSFFPQITADSLNNPKILEMSRIISNESRPFSLNAVHCWDGKACLPTMHPFGTPRKVAHKPNLLCAKWFIKTVKRHHSVSTETLVPKQDLPQIKRPLKASRTRQPSRTNLPELSVNEDLMQCTAFATADEYHLGSLSQELVSCGYVEVTSLPRDAANVLVMGVENTAKEGDPGMIFLFREGATVFWNVRDKTVKHVMQVLERHETQPYEVALVYWENEELNYMKIEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEATLDKFIESIQSIPEALKAGKKVKLSHKEVMQKMGELFALRHRINLSSDFLLTPDFYWDRANLEELYDKTCQFLSIARRVKVMNEKLQHCMELTDLMRNHLNENRALRLEWMIVILITIEVMFELGRVFF", "length": 449 }, "evidence": [ { "id": "A0A287AVV0", "url": "https://omabrowser.org/oma/group/A0A287AVV0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8M9P054-1", "protein_name": "Required for meiotic nuclear division protein 1 homolog isoform X1", "gene_name": "rmnd1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFVKMLWRLQQPLKSTQACGFTLRQINGLNSVTSNRLNCSTLALQTPFKDQRNCPAILHHCILQKGGPRFQVLTPLNFISKTWSFQVRLQSTTAATNIVLKQGGMSGKRTFKGPRTKQPSRASQPSLEEDLMQCIAYATADQYHLPTLCHDLIAHGFSEIKEFPRDASNVLVMGTDNSAKPYDSGTIFFFREGSVVFWNVEDKTMKTTMKILEQHEIQPYEVALVYWENEEINYTVGEGHSKLRHGVFLFNEELDYEQVILEKFAFSNALSLSVKLAIWEVTLDSFVESIQSIPEMLKSGQRVKLSRADVMQKIGELFSLRHCINLSSDLLITPDFYWDREDLELLYDKTCQFLNINRRVKVVNEKLQHCTELTDLMRNHLSEKHSLRLEWMIVVLITIEVMFELARVIF", "length": 410 }, "evidence": [ { "id": "A0A287AVV0", "url": "https://omabrowser.org/oma/group/A0A287AVV0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0XIY0-1", "protein_name": "Required for meiotic nuclear division 1 homolog", "gene_name": "RMND1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLKLLRLQTTSFHSLTTIGRCQRFNKTGHRLLKLDNDVDRTDHRTAKKIGNLPAPKTASPCLTSPYVQVKNWQMMQGNVSALGKSVYYQGGEVFFPPWKRFGLAAMENYKLSVEYIKNLGNISSRFYSIVSTSKIIPKSSTQPVKRPPKAPRTKQPSRANQPLLSDMENLMQCTAFATADEYHLGNLCHDLTSHGYVEITSLPRDAANVLVMGTEKSAKEDDPGMVFFFREGAVVFWNVDEKSMKNIMRVLEQHEIQPYEVALVHWENEEINYRIGEGQSKLHKGEILLNSELDTDEVVLQKFAFSNALCLSVKLAIWESLLDNFVESIQSIPEILKSRRKVKLSHADVMQKIGELFALRHRINLSSDLLITPDFYWDREKLEELYDKTCQFLNINRRVKVMNEKLQHCMELTDLMRNHLNEKHALRLEWMIVILITIEVMFELARVVL", "length": 450 }, "evidence": [ { "id": "A0A287AVV0", "url": "https://omabrowser.org/oma/group/A0A287AVV0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E9PU34-1", "protein_name": "Required for meiotic nuclear division 1 homolog", "gene_name": "Rmnd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPARQLQTLAGLHSISSKAHQCQRLTRLTLRPLTKFESTACHNSLTIQQHLDSFLPSITADSLNKPKIPETSRVISNASRLFPLNAVHWLDRKEHRPSMHAFGTHRSMTHKPNFLCSKWFIKAVKRHHSSVSNEALVPKQDLPQIKRPLKASRTRQPSRTNLPDLSVNEDLMQCTAFATADEYHLGSLSQELVSCGYVEVTSLPRDAANILVMGVESSAKEGDAGTIFLFREGAAVFWNVKDKTMKHVMQVLERHETQPYEVALVHWENEELNYTKTEGQSKLHRGEIKLNSELDLDDSILEKFAFSNALCLSVKLAIWEATLDKFIESIQSIPEALKAGKKVKLSHKEVMQKMGELFALRHRINLSSDFLITPDFYWDRANLEELYDKTCQFLSITRRVKVMNEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIEVMFELGRVFF", "length": 450 }, "evidence": [ { "id": "A0A287AVV0", "url": "https://omabrowser.org/oma/group/A0A287AVV0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MS81-1", "protein_name": "Required for meiotic nuclear division 1 homolog", "gene_name": "RMND1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVMSARLLRALAGSRHILSKACQCQRLIHQMLKPLKEFETAARTALTRNQNLDLFFPDAATGGLNKSQILWMNQKISNTNVLPPFNTACCQDGKAHLPTRNSVSTHRKVTHKPNLLGSKWFIKILKRHSSSVSTETVSKQDFPQIKRPLKASRTRQPSRTNLPVLPVNEDLMQCTAFATADEYHLGSLSQDLTSHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDQTMKHVMQVLEKHEIQPYEIALVHWENEELNYTKTEGQSKLHRGEIRLNSELDLDDVILEKFAFSNALCLSVKLAIWEASLDKFVESIQSIPEALKAGKKVKLSHEEVMQKMGELFALRHRINLSSDFLITPDFYWDRENLEELYDKTCRFLSITRRVKVMNEKLQHCMELTDLMRNHLTEKRALRLEWMIVILITIEVLFELGRVFFLIK", "length": 453 }, "evidence": [ { "id": "A0A287AVV0", "url": "https://omabrowser.org/oma/group/A0A287AVV0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8CI78-1", "protein_name": "Required for meiotic nuclear division protein 1 homolog", "gene_name": "Rmnd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"https://www.uniprot.org/uniprotkb/A0A287AW36-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKMRRYKLFLMFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLVSSFFWNNAPVTPQASPEPGSPDLLRTPLYSHSPLLQPLSPSKATEELHRMDFAMPEDTAEYFVRTKAGGVCFKPGTKTLEKPPSGRPEEKAEVGDGSSARGPARHLLSTRERPGARSARRKWVECVCLPGWHGPSCGVPTVVQYSNLPTKERLVPREVPRRIINAININHEFDLLDVRFHELGDVVDAFVVCESNFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLDHFPLGGRQDGWIADDYLRTFLTQDGVSRLRNLRPDDVFIINDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTVDMLQTVYGLDGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCSWCFTPEGIYFKLVSAQNGDFPRWGDYEDKRDLNYIRSLIRTGGWFDGTQQEYPPADPSEHMYAPKYLLKNYDQFRYLLDNPYQEPKSTADGGRRNKGPQGRPPARDKLDVVEG", "length": 533, "header": "tr|A0A287AW36-1|A0A287AW36_PIG Isoform 1 of Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Sus scrofa OX=9823 GN=MGAT3 PE=4 SV=1 CANONICAL=A0A287AW36-1" }, "isoforms": [ { "isoform_ac": "A0A287AW36-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AW36/entry#A0A287AW36-1", "sequence": { "sequence": "MKMRRYKLFLMFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLVSSFFWNNAPVTPQASPEPGSPDLLRTPLYSHSPLLQPLSPSKATEELHRMDFAMPEDTAEYFVRTKAGGVCFKPGTKTLEKPPSGRPEEKAEVGDGSSARGPARHLLSTRERPGARSARRKWVECVCLPGWHGPSCGVPTVVQYSNLPTKERLVPREVPRRIINAININHEFDLLDVRFHELGDVVDAFVVCESNFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLDHFPLGGRQDGWIADDYLRTFLTQDGVSRLRNLRPDDVFIINDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTVDMLQTVYGLDGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCSWCFTPEGIYFKLVSAQNGDFPRWGDYEDKRDLNYIRSLIRTGGWFDGTQQEYPPADPSEHMYAPKYLLKNYDQFRYLLDNPYQEPKSTADGGRRNKGPQGRPPARDKLDVVEG", "length": 533, "header": "tr|A0A287AW36-1|A0A287AW36_PIG Isoform 1 of Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Sus scrofa OX=9823 GN=MGAT3 PE=4 SV=1 CANONICAL=A0A287AW36-1" }, "locus": { "chromosome": "5", "start_pos": 8782221, "end_pos": 8780623, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051680.1", "url": "https://www.ensembl.org/id/ENSSSCT00000051680.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048120.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048120.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW36", "url": "https://www.uniprot.org/uniprotkb/A0A287AW36" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625969", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625969", "resource": "KEGG Pathway" }, { "id": "R-SSC-975574", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975574", "resource": "Reactome", "description": "Reactions specific to the hybrid N-glycan synthesis pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Y9P2-1", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase", "gene_name": "MGAT3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKMRRHKLFLTLCMAGLCLISFLHFLKALSYVTFPRDLASLSPNLVSSFFWNNAPVTPQVSPEPGGAEFLRTPLYSHSPLLQPLPPSRASEELHKVEFVLPEDTTEYFVRTKAGGVCFKPGTKVLEKPPAGGRPEERVDGVASGRPARKPLSAGGTKRRKWVECVCLPGWHGPSCGVPTVVQYSNLPTKDRLVPREIPRRVINAININHEFDLLDVRFHELGDVVDVFVVCESNFTAYGEPRPLKFREMLLNGSYEYIRHKVLYVFLDHFPAGGRQDGWIADDYLRTFLTRDGVSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTMGMLQAVYATDGIRLRRREYYTMPGFRQYENSTGHILVQWSLGSPLHFAGWHCSWCFTPEGIYFKLVSAQNGDFPRWGDYEDKRDLNYIRELIRTGGWFDGTTQEYPPADPKEHMYAPKYLLKNYQQFHYLLENPYRKAEGAG", "length": 502 }, "evidence": [ { "id": "A0A287AW36", "url": "https://omabrowser.org/oma/group/A0A287AW36/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q02527-1", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase", "gene_name": "Mgat3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKMRRYKLFLMFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLISSFFWNNAPVTPQASPEPGDPDLLRTPLYSHSPLLQPLSPSKATEELHRVDFVLPEDTTEYFVRTKAGGVCFKPGTRMLEKPSPGRTEEKTKVAEGSSVRGPARRPMRHVLSARERLGGRGTRRKWVECVCLPGWHGPSCGVPTVVQYSNLPTKERLVPREVPRRVINAININHEFDLLDVRFHELGDVVDAFVVCESNFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLDHFPPGGRQDGWIADDYLRTFLTQDGVSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTIDMLQAVYGLDGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCSWCFTPEGIYFKLVSAQNGDFPRWGDYEDKRDLNYIRSLIRTGGWFDGTQQEYPPADPSEHMYAPKYLLKNYDQFRYLLENPYREPKSTVEGGRRNQGSDGRSSAVRGKLDTTEG", "length": 538 }, "evidence": [ { "id": "A0A287AW36", "url": "https://omabrowser.org/oma/group/A0A287AW36/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q09327-1", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase", "gene_name": "MGAT3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKMRRYKLFLMFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLVSSFFWNNAPVTPQASPEPGGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFVRTKAGGVCFKPGTKMLERPPPGRPEEKPEGANGSSARRPPRYLLSARERTGGRGARRKWVECVCLPGWHGPSCGVPTVVQYSNLPTKERLVPREVPRRVINAINVNHEFDLLDVRFHELGDVVDAFVVCESNFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLDHFPPGGRQDGWIADDYLRTFLTQDGVSRLRNLRPDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTVDMLQAVYGLDGIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCSWCFTPEGIYFKLVSAQNGDFPRWGDYEDKRDLNYIRGLIRTGGWFDGTQQEYPPADPSEHMYAPKYLLKNYDRFHYLLDNPYQEPRSTAAGGWRHRGPEGRPPARGKLDEAEV", "length": 533 }, "evidence": [ { "id": "A0A287AW36", "url": "https://omabrowser.org/oma/group/A0A287AW36/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "N-acetylglucosamine metabolic process", "id": "GO:0006044", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006044", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW36", "url": "https://www.uniprot.org/uniprotkb/A0A287AW36" } ], "pmid": "" }, { "name": "regulation of cell migration", "id": "GO:0030334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030334", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW36", "url": "https://www.uniprot.org/uniprotkb/A0A287AW36" } ], "pmid": "" }, { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW36", "url": "https://www.uniprot.org/uniprotkb/A0A287AW36" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity", "id": "GO:0003830", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003830", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW36", "url": "https://www.uniprot.org/uniprotkb/A0A287AW36" } ], "pmid": "" }, { "name": "glycosyltransferase activity", "id": "GO:0016757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016757", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW36", "url": "https://www.uniprot.org/uniprotkb/A0A287AW36" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW36", "url": "https://www.uniprot.org/uniprotkb/A0A287AW36" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 397, "end_pos": 399, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G00085FR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00104PH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00123NG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00247PL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00301IL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00330GX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00348IY", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G00349CA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00357HK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00361YF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00369RM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00383YF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00463XD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00468KU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00504PZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00565QJ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G00584KG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00584LL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00666EC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00669WU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00695JO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00706YM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00709CF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00745XU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00748RT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00817BI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00826SV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00842OY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00864TV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00884ZO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00951UF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00966RI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01001RL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01079TS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01092NQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01163CA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01186OB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01233YR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01239JD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01275YS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01367ZS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01385UC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01454UB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01472KD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01521YU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01571OF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01657DW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01674EC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01685IB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01701XV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01733NS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01772UL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01868JD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01912KI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01923XE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01954BU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01962HY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01978EJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02025MF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02057LB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02117MY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02290KA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02407HJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G02441OB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02494HC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02630BJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02681BC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02684XX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02841EM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02900JI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03021PP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G03061OY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G03081NO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03175VZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03219BR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G03272YQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G03404VQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G03473UD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G03583SA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G03595ET", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G03622FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03679BF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03682TM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G03695SF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G03744SM", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G03750RD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03764XL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G03802LT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G03818JD", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G03889MY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G03941LE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03962UN", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G03974HM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G03984TW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G04019SU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G04078TP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G04105TN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G04118JZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G04139WS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G04163JP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G04209KR", 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} ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NRSN1", "url": "https://www.uniprot.org/uniprotkb/A0A287AW45", "locus": { "chromosome": "7", "start_pos": 19027226, "end_pos": 19007781, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021696", "url": "https://www.ensembl.org/id/ENSSSCG00000021696" } ] } } ], "crossref": [ { "id": "A0A287AW45", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AW45", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021696", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021696", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154240", "url": "https://www.ncbi.nlm.nih.gov/gene/100154240", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": 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"MVAGPETGRGHWELGRMSSCSNICGSKQAQAATESGYQRYGVRSYLHQFYEDCTTSIWEYEDDFQIQRSPNRWSSVFWKVGLISGTVFVILGLTVLAVGFLVPPKIEAFGEANFVVVDTHAVQFNGALDMCKLAGAVLFCIGGMSMAGCLLMSVFAKSYSKEEKILQQKFKERIADIKAHPQPITRAPGPGETKIPVTLSRVQNVQPVSAT", "length": 211, "header": "tr|A0A287AW45-1|A0A287AW45_PIG Isoform 1 of Neurensin 1 OS=Sus scrofa OX=9823 GN=NRSN1 PE=4 SV=3 CANONICAL=A0A287AW45-1" }, "locus": { "chromosome": "7", "start_pos": 19026028, "end_pos": 19014076, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038462.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038462.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048347.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048347.3" } ] } }, { "isoform_ac": "A0A8W4F711-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AW45/entry#A0A8W4F711-1", "sequence": { "sequence": 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"url": "https://www.uniprot.org/uniprotkb/A0A287AW92", "locus": { "chromosome": "3", "start_pos": 19150371, "end_pos": 19368223, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007814", "url": "https://www.ensembl.org/id/ENSSSCG00000007814" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007814", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007814", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026704", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026704", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21534", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21534", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21534:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21534:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14652", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14652", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AW92", "url": "https://www.uniprot.org/uniprotkb/A0A287AW92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AW92-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AW92-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1610, "header": "tr|A0A287AW92-1|A0A287AW92_PIG Isoform 1 of Katanin interacting protein OS=Sus scrofa OX=9823 GN=KATNIP PE=4 SV=2 CANONICAL=A0A287AW92-1" }, "locus": { "chromosome": "3", "start_pos": 19368191, "end_pos": 19152250, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057748.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057748.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048140.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048140.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 708, "start_aa": "Thr", "end_pos": 708, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr708", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW92", "url": "https://www.uniprot.org/uniprotkb/A0A287AW92" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW92", "url": "https://www.uniprot.org/uniprotkb/A0A287AW92" } ], "pmid": "" }, { "name": "intraciliary transport particle B binding", "id": "GO:0120170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120170", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW92", "url": "https://www.uniprot.org/uniprotkb/A0A287AW92" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW92", "url": "https://www.uniprot.org/uniprotkb/A0A287AW92" } ], "pmid": "" }, { "name": "ciliary base", "id": "GO:0097546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097546", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW92", "url": "https://www.uniprot.org/uniprotkb/A0A287AW92" } ], "pmid": "" }, { "name": "9+2 motile cilium", "id": "GO:0097729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097729", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW92", "url": "https://www.uniprot.org/uniprotkb/A0A287AW92" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of motile cilium assembly", "id": "GO:1905504", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905504", "evidence": [ { "database": "UniProtKB", "id": "A0A287AW92", "url": "https://www.uniprot.org/uniprotkb/A0A287AW92" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1030, "end_pos": 1032, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1070, "end_pos": 1072, 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"MEEHQEAGKESKPSCASLNLQGDSSLQVEISDAVSERDKVKFTVQTKSCLPHFAQTEFSVVRLHEEFIWLHDAYVENEDYAGLIIPPAPPRPDFEASREKLQKLGEGDSSVTREEFAKMKQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFFVFLEYGQDLSVRGKNRKELLGGFLRNIVKSADEALITGMSGLKEVDEFFEHERTFLLEYHPRIRDACLRADRVMHSHKCLADDYIPISAALSSLGTQEVNQLKMSFLKLAELFERLRKLEGRVASDQDLKLSDMLRYYTRDSQAAKDLLYRRLRALADYENASKALDKARTRNREVRAAESHQQLCCQRFERLSDSAKQELMDFKSRRVSSFRKNLVELAELELKHAKASTLLLRNTLVILKGEP", "length": 403, "header": "tr|A0A287AWP2-1|A0A287AWP2_PIG Isoform 1 of Sorting nexin OS=Sus scrofa OX=9823 GN=SNX32 PE=3 SV=1 CANONICAL=A0A287AWP2-1" }, "isoforms": [ { "isoform_ac": "A0A287AWP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWP2/entry#A0A287AWP2-1", "sequence": { "sequence": "MEEHQEAGKESKPSCASLNLQGDSSLQVEISDAVSERDKVKFTVQTKSCLPHFAQTEFSVVRLHEEFIWLHDAYVENEDYAGLIIPPAPPRPDFEASREKLQKLGEGDSSVTREEFAKMKQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFFVFLEYGQDLSVRGKNRKELLGGFLRNIVKSADEALITGMSGLKEVDEFFEHERTFLLEYHPRIRDACLRADRVMHSHKCLADDYIPISAALSSLGTQEVNQLKMSFLKLAELFERLRKLEGRVASDQDLKLSDMLRYYTRDSQAAKDLLYRRLRALADYENASKALDKARTRNREVRAAESHQQLCCQRFERLSDSAKQELMDFKSRRVSSFRKNLVELAELELKHAKASTLLLRNTLVILKGEP", "length": 403, "header": "tr|A0A287AWP2-1|A0A287AWP2_PIG Isoform 1 of Sorting nexin OS=Sus scrofa OX=9823 GN=SNX32 PE=3 SV=1 CANONICAL=A0A287AWP2-1" }, "locus": { "chromosome": "2", "start_pos": 6488292, "end_pos": 6476431, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062491.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062491.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048287.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048287.1" } ] } }, { "isoform_ac": "A0A5G2QR39-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWP2/entry#A0A5G2QR39-1", "sequence": { "sequence": "MEEHQEAGKESKPSCASLNLQGDSSLQVEISDAVSERDKVKFTVQTKSCLPHFAQTEFSVVRLHEEFIWLHDAYVENEDYAGLIIPPAPPRPDFEASREKLQKLGEGDSSVTREEFAKMKQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFFVFLEYGQDLSVRGKNRKELLGGFLRNIVKSADEALITGMSGLKEVDEFFEHERTFLLEYHPRIRDACLRADRVMHSHKCLADDYIPISAALSSLGTQEVNQLKMSFLKLAELFERLRKLEGRVASDQDLKLSDMLRYYTRDSQAAKDLLYRRLRALADYENASKALDKARTRNREVRAAESHQQLCCQRFERLSDSAKQGQHPASAEHPCHPQRGALEPLEPALGPFVMSPPALPPQEPPARPHDLLGQAPPPAPRCQALQEDRAAWAPYLATGKQSPTWGGPGPLTSLLRG", "length": 450, "header": "tr|A0A5G2QR39-1|A0A5G2QR39_PIG Computationally mapped isoform of Sorting nexin 32 OS=Sus scrofa OX=9823 GN=SNX32 PE=3 SV=2 CANONICAL=A0A287AWP2-1" }, "locus": { "chromosome": "2", "start_pos": 6488292, "end_pos": 6476204, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076775.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076775.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066517.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066517.2" } ] } }, { "isoform_ac": "F1RU17-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWP2/entry#F1RU17-1", "sequence": { "sequence": "MEEHQEAGKESKSCLPHFAQTEFSVVRLHEEFIWLHDAYVENEDYAGLIIPPAPPRPDFEASREKLQKLGEGDSSVTREEFAKMKQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFFVFLEYGQDLSVRGKNRKELLGGFLRNIVKSADEALITGMSGLKEVDEFFEHERTFLLEYHPRIRDACLRADRVMHSHKCLADDYIPISAALSSLGTQEVNQLKMSFLKLAELFERLRKLEGRVASDQDLKLSDMLRYYTRDSQAAKDLLYRRLRALADYENASKALDKARTRNREVRAAESHQQLCCQRFERLSDSAKQELMDFKSRRVSSFRKNLVELAELELKHAKASTLLLRNTLVILKGEP", "length": 368, "header": "tr|F1RU17-1|A0A287AWP2_PIG Computationally mapped isoform of Sorting nexin OS=Sus scrofa OX=9823 GN=SNX32 PE=3 SV=4 CANONICAL=A0A287AWP2-1" }, "locus": { "chromosome": "2", "start_pos": 6488292, "end_pos": 6476431, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014183.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014183.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013797.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013797.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RU17", "url": "https://www.uniprot.org/uniprotkb/F1RU17" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511178", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511178", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1LU14-1", "protein_name": "Sorting nexin", "gene_name": "Snx32", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQLRRIMEEHQQEAGKESKPSSTSVDLQGDSPLQVEISDAVSERDKVKFTVQTKSGLPHFAQPEFSVVRQHEEFIWLHDTYVENEEYAGLIIPPAPPRPDFEASREKLQKLGEGNSSITREEFARMKQELEAEYLAIFKKTVAMHEIFLQRLAAHPTLRRDHNLSVFLEYSQDLSVREKNRKEVLGGFLKSIVRSADEVLITGISGLKEVDDFFEHERTFLVEYHTRIRDTCQRADRVMHSHKCLADNYIPLSAALSSLGTQAVNQLKRSFLKLAELFERLRKLEGRIASDEDLKLSDMLRYYMRDSQAAKDLLYRRLRALADYENANKALDKARTRNREVQPAESHQQLCCQRFERLSDSAKRELMDFQSRRVSSFRKNLIELAELELKHARASTLLLQNTLVALKGEP", "length": 411 }, "evidence": [ { "id": "A0A287AWP2", "url": "https://omabrowser.org/oma/group/A0A287AWP2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80ZJ7-1", "protein_name": "Sorting nexin-32", "gene_name": "Snx32", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEQHQEAGNESKPSSTSVDLQGDSPLQVEISDAVSERDKVKFTVQTKSGLPHFAQSEFSVVRQHEEFIWLHDTYVENEEYAGLIIPPAPPRPDFEASREKLQKLGEGNSSITREEFSKMKQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFSVFLEYSQDLSVREKNRKEVLGGLLRSIVRSADEVLITGISGLKEVDDFFEHERTFLVEYHTRIRDTCQRADRVMHSHKCLADNYIPISAALSSLGTQEVNQLKRSFLKLAELFERLRKLEGRVASDEDLKLSDMLRYYMRDSQAAKDLLYRRLRALADYENANKALDKARTRNREVRPAESRQQLCCQRFERLSDSAKQELMDFKSRRVSSFRKNLIELAELELKHAKASTLLLQNTLVALKGEP", "length": 404 }, "evidence": [ { "id": "A0A287AWP2", "url": "https://omabrowser.org/oma/group/A0A287AWP2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86XE0-1", "protein_name": "Sorting nexin-32", "gene_name": "SNX32", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METYAEVGKEGKPSCASVDLQGDSSLQVEISDAVSERDKVKFTVQTKSCLPHFAQTEFSVVRQHEEFIWLHDAYVENEEYAGLIIPPAPPRPDFEASREKLQKLGEGDSSVTREEFAKMKQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFFVFLEYGQDLSVRGKNRKELLGGFLRNIVKSADEALITGMSGLKEVDDFFEHERTFLLEYHTRIRDACLRADRVMRAHKCLADDYIPISAALSSLGTQEVNQLRTSFLKLAELFERLRKLEGRVASDEDLKLSDMLRYYMRDSQAAKDLLYRRLRALADYENANKALDKARTRNREVRPAESHQQLCCQRFERLSDSAKQELMDFKSRRVSSFRKNLIELAELELKHAKASTLILRNTLVALKGEP", "length": 403 }, "evidence": [ { "id": "A0A287AWP2", "url": "https://omabrowser.org/oma/group/A0A287AWP2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWP2", "url": "https://www.uniprot.org/uniprotkb/A0A287AWP2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0005770", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWP2", "url": "https://www.uniprot.org/uniprotkb/A0A287AWP2" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWP2", "url": "https://www.uniprot.org/uniprotkb/A0A287AWP2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWP2", "url": "https://www.uniprot.org/uniprotkb/A0A287AWP2" } ], "pmid": "" }, { "name": "retrograde transport, endosome to Golgi", "id": "GO:0042147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042147", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWP2", "url": "https://www.uniprot.org/uniprotkb/A0A287AWP2" } ], "pmid": "" }, { "name": "neuron projection extension", "id": "GO:1990138", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990138", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWP2", "url": "https://www.uniprot.org/uniprotkb/A0A287AWP2" } ], "pmid": "" }, { "name": "endosome to lysosome transport via multivesicular body sorting pathway", "id": "GO:0032510", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032510", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWP2", "url": "https://www.uniprot.org/uniprotkb/A0A287AWP2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatidylinositol binding", "id": "GO:0035091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035091", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWP2", "url": "https://www.uniprot.org/uniprotkb/A0A287AWP2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" } ], 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AWQ5-1", "uniprot_ac": "A0A287AWQ5", "uniprot_id": "A0A287AWQ5_PIG", "mass": { "chemical_mass": 16910.0, "monoisotopic_mass": 16910.0 }, "refseq": { "ac": "XP_005665101", "name": "SUZ domain-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665101" }, "gene_names": [ { "name": "SZRD1", "type": "recommended", "evidence": [ { "id": "A0A287AWQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AWQ5" } ] }, { "name": "SZRD1", "type": "synonym", "evidence": [ { "id": 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"MLVATFSEQEQKELAEKLTSLLSTYRHISDSYIIEFFSESLWETLPVSWQEALGDLTPPMIADLLLDDKIKDRRYSSVWPLSLLALRTAAHALTFPRTTPGGHQQNAGVAAEEFQSNHSQSSLLGHIFRKHVKPKKQHEIRRLGMLVKELCDQANCNCVVDVGSGQGHLTRFLSFGLGLHVTGIEADPNLVSMATKFDRQLLQTLTKENQSSGKAHVLRSEPGPPPRHVVGWVNPKASWDVFIQQLGMTATESDSIGATTEKKQRVEDLHLEPLSCQTKAEDLQNTLHSQKTASQTNTSIFPSGTATEMLTCKTIPIPKRDPGSFVLTGLHACGDLSATLLRHFTNCPHVNVITSVACCYMKISTKENPNPPGVFQPPFFSDITTADFCSEFGYPMSNWVRGLTGHQLSYKAREGACHAIEEYLQRLREESTLLRTHCYRAILENIIRAHRPDIRRPGVQTVKKAHMLSFSELVTFFCHIRKYARLALPRVGLPADLPFDPVCVDAMLAQQGKVVAYFSLVLLLAPVVETLVLLDRIIFLQERGFQSKLIPLFDAAFSPRNLVLVAVKSEETRS", "length": 574 }, "evidence": [ { "id": "A0A287AWU4", "url": "https://omabrowser.org/oma/group/A0A287AWU4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8DY65-1", "protein_name": "Methyltransferase domain-containing protein", "gene_name": "Dmel\\CG2906", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLIVREKLERGLELLKKYEWLLDAYVLDFFIDDHWSKLPGNWQKHLESIPLENLGDLLKNENHNTQLTWPLDLKNLQEELRKLCVSRVPKHPPDNSLPCSLLDHPKLKYVFLKRVKPKKHHEIIRMAEICALSQQKTPVDFIVDFGAGVGHLARVLGYGYGLRVCCYEMQPDLNQQAREIDLKLESMAAKHLSEDETTHFQRPVHLTHRLESSTKPEQFLSSIRQALQLTDDNFRFGVIGLHPCGNLGPTLMRMFLGCPQAKFLNFVGCCYQKMTTQSTHPREHVHGYPLSSELKDKNECQLSYEAREISCHAMEVYHDRLRMGDYQHLRIHSLRAAAERIIVHQFPELRHCALRNVKYSPGMTFHQYFQKAVQGTRFEALDSRTLSNQQTETDLANWQRIVSFYTLRLMMAPLVESIILYDRCLFLMENDCQVQIEAIFDPRLSPRNHITRAVKP", "length": 456 }, "evidence": [ { "id": "A0A287AWU4", "url": "https://omabrowser.org/oma/group/A0A287AWU4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "F1MN22-1", "protein_name": "Methyltransferase like 25B", "gene_name": "METTL25B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPGVSARRLSHEERRQLAVNLTRVVTLYRSILDAYIIEFFTDNLWGTLPCSWQEALDGLNPPQLATLLLGMPREGEVARYRSVWPLTLLALKSTAYALAFTRTPGFQTPSEFLENPSQSSRLTAPFRKHVRPKKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSIEGDQRLVERAQRLDQELLQTLEKEEKRNPKVVQTGPRHPPHHVVRWVDPTTLCEELLLPLETSPQSRARLLLTGLHACGDLSVALLRHFCCCPEVVALASVGCCYMKLSDPGGYPLSQWVAGLPGYELPYRLREGACHALEEYAERLQKAGPSLRTHCYRAALETVIRCAQPELRRPGVQGIPRVHELKIEEYVQRGLQRVGLDPHLPLNVAALRAHQAQENRVVAFFSLALLLAPLVETLILLDRLLYLQEQGFHAELLPIFSPELSPRNLVLVATKGPLGEAFSLLETEDN", "length": 475 }, "evidence": [ { "id": "A0A287AWU4", "url": "https://omabrowser.org/oma/group/A0A287AWU4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AYG0-1", "protein_name": "Methyltransferase-like protein 25B", "gene_name": "Mettl25b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPGVSAHGLSCEERRQLAVDLTRVLALYRSILDAYIIEFFTDSLWGTLPHAWQEVLDGLNPPELATLLLGMPREGEEIRYRSVWPLTLLALKSTACALAFTRTPGFHTPSEFLENPSQSSRLTAPFRKHVKPKKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSLEGNKRLVARAQRLDQELLQALDKMEKRHPKMVQRSPRHRPHHVVQWVSPTTLCEELLLPLEMPGQSSTRLLLTGLHACGDLSVALLRHFCCCPEVVALASVGCCYMKLSDPGSYPLSQWVAGLPGHELPYRLREGACHALEDYAERLQKAGPGLQTHCFRAALEAVIRQVCPELRRPGVQGIPRVHELKIEEYVQQGLQRVGLDPQLPLDQAALQAHQAQENRVVAFFSLALLLAPLVETLILLDRMLYLQEQGFYAELLPIFSPELSPRNLVLVATKTPLGQAFSILETEDS", "length": 475 }, "evidence": [ { "id": "A0A287AWU4", "url": "https://omabrowser.org/oma/group/A0A287AWU4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86K81-1", "protein_name": "Methyltransferase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MINEVLLKKYIGEENFKSGCIRPNKYKDSIKYADDLIEFINKYSFLYENRSLDFFRDNIWSRLIPEEWKQPLLDLTDDECVEFHSGTVIKGEWPISLKSFITDAIELWIPKNVYLPDDQWILQDTKKDFNLDSLFLGMSEKKIHEILRMSEFVNMIAKQLNPNEIVDIGAGEAYLTQILNHQFNHSMTAIDCSESFIEGAIKRQSLIENQRIKKELKQQKETTSTTEIINNKLKLNNIENNLNEIKKIKEIEKKEIMNKLNLKSTNMCVTTISTDMKNDDFLNILNRNDSTKNYESIMLIGLHTCGILPPTMIKNYLQCSNIDSIIDVGCCYYKIDTDSNHEFMSDHCIKKNLKLGPAPLKLSCEASDSSQKDLESFKYSSRIHYYRVILEDWILNEINKSNNNLIKSHDFTIRNISKNQSKDYKSYYNAALIRMKRQQNEQSIHLDFKLPETCQPIISYFEQQNQKQQEKQITTFLLLRSLLAPVLESIIVLDRFLYLNQFSSTTQSFIIPIFNKLISPRNLIILSFKNKK", "length": 532 }, "evidence": [ { "id": "A0A287AWU4", "url": "https://omabrowser.org/oma/group/A0A287AWU4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BZG5-1", "protein_name": "Methyltransferase-like protein 25B", "gene_name": "Mettl25b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRGVSAHGLSHEERRQLAVDLTRVLAHYRSILDAYIIEFFTDSLWGTLPHSWQEALDGLNPPQLATLLLGMPRDGEEMRYRSVWPLTLLALKSTACALAFTRTPGFHTPSEFLENPSQSSRLTAPFRKHVKPKKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSLEGNQRLVKRAQHLDQELLKALDKMEKRHPKMVQRGPRHRPHHVVQWVSPTTLCEELLLPLERPGQSSARLLLTGLHACGDLSVALLRHFCCCPEVVALASVGCCYMKLSDPGSYPLSQWIAGLPGHELPYRLREGACHALEDYAERLHKAEPGLQTHCFRAALETVIRQVCPELRRPGVQGIPRVHELKIEEYVKQGLKRVGLDPQLPLDLAALQAHQAQENRVVAFFSLALLLAPLVETLILLDRMLYLQEQGFYAELLPIFSPELSPRNLVLVATKTPLGQAFSTLETEDN", "length": 475 }, "evidence": [ { "id": "A0A287AWU4", "url": "https://omabrowser.org/oma/group/A0A287AWU4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96FB5-1", "protein_name": "Methyltransferase-like protein 25B", "gene_name": "METTL25B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPGISARGLSHEGRKQLAVNLTRVLALYRSILDAYIIEFFTDNLWDTLPCSWQEALDGLKPPQLATMLLGMPGEGEVVRYRSVWPLTLLALKSTACALAFTRMPGFQTPSEFLENPSQSSRLTAPFRKHVRPKKQHEIRRLGELVKKLSDFTGCTQVVDVGSGQGHLSRFMALGLGLMVKSIEGDQRLVERAQRLDQELLQALEKEEKRNPQVVQTSPRHSPHHVVRWVDPTALCEELLLPLENPCQGRARLLLTGLHACGDLSVALLRHFSCCPEVVALASVGCCYMKLSDPGGYPLSQWVAGLPGYELPYRLREGACHALEEYAERLQKAGPGLRTHCYRAALETVIRRARPELRRPGVQGIPRVHELKIEEYVQRGLQRVGLDPQLPLNLAALQAHVAQENRVVAFFSLALLLAPLVETLILLDRLLYLQEQGFHAELLPIFSPELSPRNLVLVATKMPLGQALSVLETEDS", "length": 475 }, "evidence": [ { "id": "A0A287AWU4", "url": "https://omabrowser.org/oma/group/A0A287AWU4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "rRNA (adenine-N6,N6-)-dimethyltransferase activity", "id": "GO:0000179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000179", "evidence": [ { "database": "UniProtKB", "id": "A0A287AWU4", "url": "https://www.uniprot.org/uniprotkb/A0A287AWU4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AWU4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 475, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AWU4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AWU4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AWU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AWU4" }, { "id": "PF13679", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13679" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Methyltransferase", "eco_id": "ECO_0000259", "start_pos": 133, "end_pos": 291, "start_aa": "Lys", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 20, "end_pos": 22 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AWU5-1", "uniprot_ac": "A0A287AWU5", "uniprot_id": "A0A287AWU5_PIG", "mass": { "chemical_mass": 41101.0, "monoisotopic_mass": 41101.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "MAGE domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287AWU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AWU5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AWU5", "url": "https://www.uniprot.org/uniprotkb/A0A287AWU5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287AWU5", "locus": {} } ], "crossref": [ { "id": "A0A287AWU5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AWU5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037401", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037401", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736:SF145", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736:SF145", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01454", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01454", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12440", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12440", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AWU5", "url": "https://www.uniprot.org/uniprotkb/A0A287AWU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWU5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLNKARIIKISTLLHLLPPRVVMPRRQKNPQHSYDQQLQTFTKSQDLEVAQVSRALEETHLSSHPLMPGNLKEAAGTSVSGFPESPQSFYASATAFTPTSSSKSDEGFTSPGKEHSSGTSQAVPDPQNVPIDALNKDVALVVNFLLLKYQMKEPITEEEMLKIVNNCQVHFPEILMRASEHMEIIFGLDLKEVDPANHRYDLLIKLGLTYDGMLPGEVGVPKTGFLLLILGVIFMKGNRATEAEIWEVLNATGIYSGRKHFIFGEPRKLITKDFVKEKYLEYRQVADTDPAQFEFLWGPRAHAETTKMKVLEFLAKVHGTDASSFPSQYEEALQDEEEKARARIPGRAVSPSLATASSGVKTGSFFHT", "length": 369, "header": "tr|A0A287AWU5-1|A0A287AWU5_PIG Isoform 1 of MAGE domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287AWU5-1" }, "isoforms": [ { "isoform_ac": "A0A287AWU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWU5/entry#A0A287AWU5-1", "sequence": { "sequence": "MDLNKARIIKISTLLHLLPPRVVMPRRQKNPQHSYDQQLQTFTKSQDLEVAQVSRALEETHLSSHPLMPGNLKEAAGTSVSGFPESPQSFYASATAFTPTSSSKSDEGFTSPGKEHSSGTSQAVPDPQNVPIDALNKDVALVVNFLLLKYQMKEPITEEEMLKIVNNCQVHFPEILMRASEHMEIIFGLDLKEVDPANHRYDLLIKLGLTYDGMLPGEVGVPKTGFLLLILGVIFMKGNRATEAEIWEVLNATGIYSGRKHFIFGEPRKLITKDFVKEKYLEYRQVADTDPAQFEFLWGPRAHAETTKMKVLEFLAKVHGTDASSFPSQYEEALQDEEEKARARIPGRAVSPSLATASSGVKTGSFFHT", "length": 369, "header": "tr|A0A287AWU5-1|A0A287AWU5_PIG Isoform 1 of MAGE domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287AWU5-1" }, "locus": { "chromosome": "X", "start_pos": 31597410, "end_pos": 31595564, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049274.2", "url": 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GN=GRAMD4 PE=4 SV=3 CANONICAL=A0A287AWW9-1" }, "locus": { "chromosome": "5", "start_pos": 2947643, "end_pos": 2875384, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065908.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065908.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050391.3", "url": "https://www.ensembl.org/id/ENSSSCP00000050391.3" } ] } }, { "isoform_ac": "A0A5G2QNK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWW9/entry#A0A5G2QNK9-1", "sequence": { "sequence": 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"Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AX08", "url": "https://www.uniprot.org/uniprotkb/A0A287AX08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AX08-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALSNSSWGNYSSAPVSEFLLTCFPNYQSWQHWLSLPLSLLFLLAMGANATLLVTIRLEASLHQPMYYLLSLLSLLDMVLCLTVIPKVLAIFWFDLRAISFFACFLQMFIMNSFLTMESCTFMVMAYDRYVAICHPLRYPSIITDQFVARAAIFVVARNGLLTMPIPILSSRLRYCAEKVIQNCICTNLSVSKLSCEDITFNRLYQFVAGWTLLGSDLVLTVLSYSFILKAVLRIRAEGAAAKALSTCGSHFILILFFSTVLLVLVITNLARKRIPPDVPILLNILHHLIPPALNPIVYGVRTKEVKQGIQKLLSRL", "length": 317, "header": "tr|A0A287AX08-1|A0A287AX08_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 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"https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX08", "url": "https://www.uniprot.org/uniprotkb/A0A287AX08" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX08", "url": "https://www.uniprot.org/uniprotkb/A0A287AX08" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX08", "url": "https://www.uniprot.org/uniprotkb/A0A287AX08" } ], "pmid": "" } ] }, { 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"length": 1005, "header": "tr|A0A287AX09-1|A0A287AX09_PIG Isoform 1 of Zinc finger RNA binding protein 2 OS=Sus scrofa OX=9823 GN=ZFR2 PE=4 SV=1 CANONICAL=A0A287AX09-1" }, "locus": { "chromosome": "2", "start_pos": 74895568, "end_pos": 74846058, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063595.1", "url": "https://www.ensembl.org/id/ENSSSCT00000063595.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048686.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048686.1" } ] } }, { "isoform_ac": "F1S7P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX09/entry#F1S7P2-1", "sequence": { "sequence": "MAASNYYGFAQGSGSQYSAQPPTAFPLPAAGTSFAAQPTPGLGPVLPPAFPETAQPPRPITPVGYGGYHPHSGQDLGYGSQPQEPTPAPSTAPSYQGSYSYGLSTAASGYENKQYRPPAAGPPPLPATASLCPSGTQGPCSGYSQGQLLPQAPTAEVGQPASAASSSYTCPSAASSAQPTASSIPTLTSYSPAPALYTGSSYPSYDASAYSVASPYYPPLLPPQMQPLPALGLPQPPLPPPPPPPPQQPPPLPKPMDSSPWGGSGSSPSAGSADNFAKKLPVPTKLLKPRAGPKQLLLHYCDICKISCAGPQTYREHLEGQKHKKKEAAQKMGIQPNGSPRGVQAQLHCDLCAVSCTGAEAYTAHIRGAKHQKVFKLHTKLGKPIPTIEPAPENSSSSQATGTSKTASTSLPTESPPLALAKPSAPAGPSVCAPGRPAPAKRPAASKASRVGSLEQRTADSRLPEGKPAHPKSERPRELSTSGNSLEASGSFCDTQPVGPGYVEEVCNEEGRVIRFHCKLCECSFNDPNARDMHVRGRRHRLQYKKKVNPDLPIADKPSTRVRKLLEEKLRKQRQLTKRRLGELRRLHNEMRRYDLCKRRLEEEPQVQDAHPGRSPDQHPPPLRSRPGAPAARPLPTRRPESSDDRHVMCKHAAIYPTEEELLAVQKAVSHSERALKLVSDMLAEEDSASPEPEVGECSRPSSSSRILKGVMRVGLLAKGLLLRGDRAVQLILLSSQKPTRALLHRVAEQLPLQFPIVTDDKYEVSSDPEANIIISSCEEPKMQVTVSITSPLMREDPSTDREGTEAPLPDPGDVLSPEKCLQSLAALRRAKWFQARASGLQPCVIVIRILRDLCQRVPTWGALPDWAMELLVEKALSSTKGPLSPGDAVRRVLECVASGTLLTALFPLGRGPQNRLAAGGDTRPGS", "length": 927, "header": "tr|F1S7P2-1|A0A287AX09_PIG Computationally mapped isoform of Zinc finger RNA binding protein 2 OS=Sus scrofa OX=9823 GN=ZFR2 PE=4 SV=5 CANONICAL=A0A287AX09-1" }, "locus": { "chromosome": "2", "start_pos": 74899023, "end_pos": 74846058, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014741.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014741.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014343.5", "url": "https://www.ensembl.org/id/ENSSSCP00000014343.5" } ] } }, { "isoform_ac": "I3LE06-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX09/entry#I3LE06-1", "sequence": { "sequence": "MAASNYYGFAQGSGSQYSAQPPTAFPLPAAGTSFAAQPTPGLGPVLPPAFPETAQPPRPITPVGYGGYHPHSGQDLGYGSQPQEPTPAPSTAPSYQGSYSYGLSTAASGYENKQYRPPAAGPPPLPATASLCPSGTQGPCSGYSQGQLLPQAPTAEVGQPASAASSSYTCPSAASSAQPTASSIPTLTSYSPAPALYTGSSYPSYDASAYSVASPYYPPLLPPQMQPLPALGLPQPPLPPPPPPPPQQPPPLPKPMDSSPWGGSGSSPSAGSADNFAKKLPVPTKLLKPRAGPKQLLLHYCDICKISCAGPQTYREHLEGQKHKKKEAAQKMGIQPNGSPRGVQAQLHCDLCAVSCTGAEAYTAHIRGAKHQKVFKLHTKLGKPIPTIEPAPENSSSSQATGTSKTASTSLPTESPPLALAKPSAPAGPSVCAPGRPAPAKRPAASKASRVGSLEQRTADSRLPEGKPAHPKSERPRELSTSGNSLEASGSFCDTQPVGPGYVEEVCNEEGRVIRFHCKLCECSFNDPNARDMHVRGRRHRLQYKKKVNPDLPIADKPSTRVRKLLEEKLRKQRQLTKRRLGELRRLHNEMRRYDLCKRRLEEEPQVQDAHPGRSPDQHPPPLRSRPGAPAARPLPTRRPESSDDRHVMCKHAAIYPTEEELLAVQKAVSHSERALKLVSDMLAEEDSASPEPEVGECSRPSSSSRILKGVMRVGLLAKGLLLRGDRAVQLILLSSQKPTRALLHRVAEQLPLQFPIVTDDKYEVSSDPEANIIISSCEEPKMQVTVSITSPLMREDPSTDREGTEAPLPDPGDVLSPEKCLQSLAALRRAKWFQARASGLQPCVIVIRILRDLCQRVPTWGALPDWAMELLVEKALSSTKGPLSPGDAVRRVLECVASGTLLTDGPGLQDPCERDQMDALGSMTLQEREDITASAQPSSPWAEDPRTGWQLAETRDQAPEKSDHCGGEKQPETATRDLRLRELVGQLGC", "length": 990, "header": "tr|I3LE06-1|A0A287AX09_PIG Computationally mapped isoform of Zinc finger RNA binding protein 2 OS=Sus scrofa OX=9823 GN=ZFR2 PE=4 SV=4 CANONICAL=A0A287AX09-1" }, "locus": { "chromosome": "2", "start_pos": 74899114, "end_pos": 74846058, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026925.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026925.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022291.4", "url": "https://www.ensembl.org/id/ENSSSCP00000022291.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 39, "start_aa": "Thr", "end_pos": 39, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr39", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 86, "start_aa": "Thr", "end_pos": 86, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr86", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S7P2", "url": "https://www.uniprot.org/uniprotkb/F1S7P2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5Y1D0-1", "protein_name": "Zinc finger RNA binding protein 2", "gene_name": "Zfr2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAASSSSGLAQGASPSSTQPSSTLSLPATGASYTVPSTPRMKSTVSLALAPTSQPPAPRGGVTVGYSCSQPHPSQGPTSNSRSRGPVPTTASTHQEDGHSCREKATKSRTDSRERPARSLSRPGPSSRSPDSDSVSPDSWGGPVLGPWDPTFTSDALPFLDRLPKPKAGPRPPSMHYCEVCRVSCAGPQTYRDHLEGQKHRKKQAAQRTRTQPSGGPRGSQSLHCGLCAVSCTGADAYAAHMRGARHQKVFKLHTRLGKPIPSEPTPRSVTYTRGSDSTPETSVKHEAHARHSSHTQGRPAPAKGPAASRKGSPELQTVHSWPGDRRPSHCKAEATRGGSGEASGISGDTEPVGTEYVEQVCSEEGKVIRFRCKLCECSFNDRNARDMHLTGRRHRLQYRKKVDPTLPVATRPSGPMQRVLAKRLQRQRQQTQARLEDAQRWNSELRQQEEHSRQPEEPPQPQVEEQLPGSPTWALPAPTTRPGMASPRRQSGRRPESSDDRHVMYKHASIYPTEEELQAIQTAVSHTERALRLVSDTLAEESSQQGTLVSPPPRMLKGVVRVGILAKGLVLRGDHSVQLTLLCSKKPTHSLLQRIKQELPRELSIVAEDKYEVSSDHDANIVISACVEPGVKVTVSATSPLMREDPSVKQELQDSLSDPEDILDRERCLETLAALRHAKWFQARASGLQPCVIVIRVLRDLCRCLPPWGALPAWAMELLVEKVLSSAPRPLSPGDAMRRVLEYVATGALLTDGPGLQDPCEKGPQDALEPMTPQQREDLTASAQHALRLVAFRQIHKVLHMEHLPPRTRFGARKRMREASQTQEGARERKRGRQGTAGLP", "length": 841 }, "evidence": [ { "id": "A0A287AX09", "url": "https://omabrowser.org/oma/group/A0A287AX09/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9Q5M4-1", "protein_name": "Zinc finger RNA binding protein 2", "gene_name": "Zfr2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAASSSSGLAQGTNPSSSTQSSSAFPLPATGASYTVQFTPKMESTASLALAPASQLPAPGGGVAVGYSCSQPQASQGPTSSSQPRGPVPTSASAHQEDGHSYREKVTKSRTDSRERPARSLCRPGPSSRSPDSDSVSPGPQRPPPSSQRAPQKLQAPSPPPAPVGSDPWGGPVLGPWDPTFTSDALPFLDRLPKPKAGPRPPSMHYCEVCRVSCAGPQTYRDHLEGQKHRKKQAAQRTSTQPSGGPRGSQSLHCGLCAVSCTGADAYAAHMRGARHQKVFKLHTRLGKPIPSEPTPRSVTYTRGSDSTPETSVKHEAHARHSSHTQGRPAPAKGSAASRKGPPELQTMHGRPGDRRPSHFKVEATRGGPGEASGSSGDMAPVGTEYVEEVCSDEGKVIRFRCKLCECSFNDRNARDMHLTGRRHRLQYRKKVDPTLPVAARPSGPIQRVLAKRLQRHWQQVQTQLEDTRRWDSELRQQEEHSRQPEETPQPQVEEQLPGLPAWALPAPTTRPGMATARRQSGRRPESSDDRHVMCKHASIYPTEEELQAIQTAVSHTERALRLVSDTLAEESSQHGTLASPPPRMLKGVVRVGILAKGLVLRGDHSVQLTLLCSKKPTHSLLQRIKQELPRELSIVAEDKYEVSSDHDANIVISACVEPGVKVTVSATSPLMREDPSVKQGQQDALSDPEDVLDRERCLETLAALRHAKWFQARASGLQPCVIVIRVLRELCRCLPPWGALPAWAMELLVEKVLSSAPRPLSPGDAMRRVLEYVATGALLTDGPGLQDPCEKGPQDALEPMTPQQREDLTASAQRALRLVAFRQIHKVLHMEQLPPRTRFGAGARARKRMREASQAQEGTRERKRGRQGTAGLP", "length": 874 }, "evidence": [ { "id": "A0A287AX09", "url": "https://omabrowser.org/oma/group/A0A287AX09/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UPR6-1", "protein_name": "Zinc finger RNA-binding protein 2", "gene_name": "ZFR2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATSQYFDFAQGGGPQYSAQPPTLPLPTVGASYTAQPTPGMDPAVNPAFPPAAPAGYGGYQPHSGQDFAYGSRPQEPVPTATTMATYQDSYSYGQSAAARSYEDRPYFQSAALQSGRMTAADSGQPGTQEACGQPSPHGSHSHAQPPQQAPIVESGQPASTLSSGYTYPTATGVQPESSASIVTSYPPPSYNPTCTAYTAPSYPNYDASVYSAASPFYPPAQPPPPPGPPQQLPPPPAPAGSGSSPRADSKPPLPSKLPRPKAGPRQLQLHYCDICKISCAGPQTYREHLGGQKHRKKEAAQKTGVQPNGSPRGVQAQLHCDLCAVSCTGADAYAAHIRGSKHQKVFKLHAKLGKPIPTLEPALATESPPGAEAKPTSPTGPSVCASSRPALAKRPVASKALCEGPPEPQAAGCRPQWGKPAQPKLEGPGAPTQGGSKEAPAGCSDAQPVGPEYVEEVFSDEGRVLRFHCKLCECSFNDLNAKDLHVRGRRHRLQYRKKVNPDLPIATEPSSRARKVLEERMRKQRHLAEERLEQLRRWHAERRRLEEEPPQDVPPHAPPDWAQPLLMGRPESPASAPLQPGRRPASSDDRHVMCKHATIYPTEQELLAVQRAVSHAERALKLVSDTLAEEDRGRREEEGDKRSSVAPQTRVLKGVMRVGILAKGLLLRGDRNVRLALLCSEKPTHSLLRRIAQQLPRQLQMVTEDEYEVSSDPEANIVISSCEEPRMQVTISVTSPLMREDPSTDPGVEEPQADAGDVLSPKKCLESLAALRHARWFQARASGLQPCVIVIRVLRDLCRRVPTWGALPAWAMELLVEKAVSSAAGPLGPGDAVRRVLECVATGTLLTDGPGLQDPCERDQTDALEPMTLQEREDVTASAQHALRMLAFRQTHKVLGMDLLPPRHRLGARFRKRQRGPGEGEEGAGEKKRGRRGGEGLV", "length": 939 }, "evidence": [ { "id": "A0A287AX09", "url": "https://omabrowser.org/oma/group/A0A287AX09/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX09", "url": "https://www.uniprot.org/uniprotkb/A0A287AX09" } ], "pmid": "" }, { "name": "double-stranded RNA binding", "id": "GO:0003725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003725", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX09", "url": "https://www.uniprot.org/uniprotkb/A0A287AX09" } ], "pmid": "" }, { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX09", "url": "https://www.uniprot.org/uniprotkb/A0A287AX09" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX09", "url": "https://www.uniprot.org/uniprotkb/A0A287AX09" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1003, "end_pos": 1005, "annotation": "n_glycosylation_sequon" }, { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AX09-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1005, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AX09-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AX09" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AX09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX09" }, { "id": "PS51703", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51703" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DZF", "eco_id": "ECO_0000259", "start_pos": 626, "end_pos": 1000, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 39, 86 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1003, "end_pos": 1005 }, { "start_pos": 337, "end_pos": 339 }, { "start_pos": 394, "end_pos": 396 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, 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"evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 548, "start_aa": "Thr", "end_pos": 548, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr548", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXL0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXL0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXL0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXL0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXL0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXL0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "eye development", "id": "GO:0001654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXL0", "url": "https://www.uniprot.org/uniprotkb/A0A287AXL0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1001, "end_pos": 1003, "annotation": "n_glycosylation_sequon" }, { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1382, "end_pos": 1384, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1593, "end_pos": 1595, "annotation": "n_glycosylation_sequon" }, { 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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-176054", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176054" } ] }, { "id": "R-SSC-9748996", "name": "GST dimers cleave AZA to 6MP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. 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"tr|A0A287AXW8-1|A0A287AXW8_PIG Isoform 1 of CRACD like OS=Sus scrofa OX=9823 GN=CRACDL PE=4 SV=1 CANONICAL=A0A287AXW8-1" }, "locus": { "chromosome": "3", "start_pos": 55488448, "end_pos": 55364481, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051204.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051204.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048988.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048988.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 761, "start_aa": "Thr", "end_pos": 761, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr761", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": 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"https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 500, "end_pos": 502, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AXW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AXW8" }, { "id": "PF15262", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4592", "eco_id": "ECO_0000259", "start_pos": 143, "end_pos": 264, "start_aa": "Cys", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 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"evidence": [ { "database": "UniProtKB", "id": "A0A287AXY4", "url": "https://www.uniprot.org/uniprotkb/A0A287AXY4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DNLZ", "url": "https://www.uniprot.org/uniprotkb/A0A287AXY4", "locus": {} } ], "crossref": [ { "id": "A0A287AXY4", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AXY4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000034732", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034732", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110258077", "url": "https://www.ncbi.nlm.nih.gov/gene/110258077", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024158", "database": "InterPro", 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K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXY4", "url": "https://www.uniprot.org/uniprotkb/A0A287AXY4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110258077", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110258077", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TGG8-1", "protein_name": "DNL-type zinc finger", "gene_name": "DNLZ", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVSVQRASFDAAPAGTRRRPPRGSGAHRRPPGGSRALPAHRRRKPGRVASAAARFQYGSGAGRPAGGMLRAALSHVPILLSCARPRGPSPRWLWDRRARLQAAGTRRAWGWGWRRLSSEPGPGPAHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILAARGEKVRRVAGDGALELLLEAAGPPKPTTAAEGAEDQDSTQPSKTEAS", "length": 236 }, "evidence": [ { "id": "A0A287AXY4", "url": "https://omabrowser.org/oma/group/A0A287AXY4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZWJ1-1", "protein_name": "DNL-type zinc finger", "gene_name": "Dnlz", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQPNKMTSELSLLVGCASGVTPGGDRMQRAGGGWKLKRAASGRCAHFQNGGYSFSCTGRCKKRWPRIVVVTVPWNGMLRTALSRMPTLLRSVRTRDSGPRQLWDLGARLKTAKRLRGWAWGWRSSSSAPGSEHAAALGRVKADHYQLVYTCKVCGTRSSKHISKLAYHQGVVIVTCPGCQNHHIIADNLSWFSDLKGKRNIEEILAARGEEVRRVCGDGALELILEVAEPPATPEGGEDPTHPGKMDQS", "length": 249 }, "evidence": [ { "id": "A0A287AXY4", "url": "https://omabrowser.org/oma/group/A0A287AXY4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5SXM8-1", "protein_name": "DNL-type zinc finger protein", "gene_name": "DNLZ", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLRTALRGAPRLLSRVQPRAPCLRRLWGRGARPEVAGRRRAWAWGWRRSSSEQGPGPAAALGRVEAAHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLNGKRNIEEILTARGEQVHRVAGEGALELVLEAAGAPTSTAAPEAGEDEGPPSPGKTEPS", "length": 178 }, "evidence": [ { "id": "A0A287AXY4", "url": "https://omabrowser.org/oma/group/A0A287AXY4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D113-1", "protein_name": "DNL-type zinc finger protein", "gene_name": "Dnlz", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLRTALSRMPTLLRSVRTRDSGPRRLWDLGARLKTAERLRGWAWGWASGWRSSSSAPGSGRAAALGRVEADHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLSWFSDLKGKRNIEEILAARGEEVRRVSGDGALELILEAAVPPDTPEGDEDPPNPGKMGQS", "length": 177 }, "evidence": [ { "id": "A0A287AXY4", "url": "https://omabrowser.org/oma/group/A0A287AXY4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXY4", "url": "https://www.uniprot.org/uniprotkb/A0A287AXY4" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXY4", "url": "https://www.uniprot.org/uniprotkb/A0A287AXY4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXY4", "url": "https://www.uniprot.org/uniprotkb/A0A287AXY4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc 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"MPWDAQRPGGGADGGAEGAGAARSRAQKQCRKSSFAFYQAVRDLLPVWLLEDMRASEAFHWDERGRAAAYSPSEALLYALVHDHQAYAHYLLATFPRRALAPPSAGFRCCAAPGPHVALAVRYNRVGILRRILRTVRDFPAEERARLLDRRAAAAWRVAARRCTWPASWRAPSASSCCSATVPRLACATAAASRRWNCSCASWAATPGPRSLPPPTPPPGRLHPGSRASAACCCSTCWRCTRPQTPLARPAASCWATGRAGSGCWGRTSSSGWRPGATLALRACHAGAGHRHLARPLPRGPGRAAAATLPAAAGPHWQGLDRGGILALAFWRILFFRALYPALYIHCLCTRNHSFVCRVL", "length": 360, "header": "tr|A0A287AXZ1-1|A0A287AXZ1_PIG Isoform 1 of Ankyrin repeat domain 9 OS=Sus scrofa OX=9823 GN=ANKRD9 PE=4 SV=2 CANONICAL=A0A287AXZ1-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 1262338, "end_pos": 1261259, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056892.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056892.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048765.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048765.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 206, "start_aa": "Thr", "end_pos": 206, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr206", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 216, "start_aa": "Thr", "end_pos": 216, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr216", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AXZ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 197, "end_pos": 199, "annotation": "n_glycosylation_sequon" }, { "start_pos": 352, "end_pos": 354, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AXZ1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 360, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AXZ1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AXZ1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 206, 216 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 197, "end_pos": 199 }, { "start_pos": 352, "end_pos": 354 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AY59-1", "uniprot_ac": "A0A287AY59", "uniprot_id": "A0A287AY59_PIG", "mass": { "chemical_mass": 73605.0, "monoisotopic_mass": 73605.0 }, "refseq": { "ac": "XP_005672781", "name": "zinc finger protein 133 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672781" }, "gene_names": [ { "name": "ZNF133", "type": "recommended", "evidence": [ { "id": "A0A287AY59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AY59" } ] }, { "name": "ZNF133", "type": "synonym", "evidence": [ { "id": "XP_005672781", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672781" } ] } ], "protein_names": [ { "name": "Zinc finger protein 133", "type": "synonym", "evidence": [ { "id": "A0A287AY59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AY59/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 133 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005672781", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672781" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AY59", "url": "https://www.uniprot.org/uniprotkb/A0A287AY59#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A5G2QT65", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT65#function" }, { "database": "UniProtKB", "id": "F1SBH6", "url": "https://www.uniprot.org/uniprotkb/F1SBH6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AY59", "url": "https://www.uniprot.org/uniprotkb/A0A287AY59" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF133", "url": "https://www.uniprot.org/uniprotkb/A0A287AY59", "locus": { "chromosome": "17", "start_pos": 26625276, "end_pos": 26595818, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007093", "url": "https://www.ensembl.org/id/ENSSSCG00000007093" } ] } } ], "crossref": [ { "id": "A0A287AY59", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AY59", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007093", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007093", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523338", "url": "https://www.ncbi.nlm.nih.gov/gene/100523338", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A287AY59", "url": "https://www.orthodb.org/?gene=A0A287AY59", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24376", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24376", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24376:SF251", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24376:SF251", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005672781", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672781", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AY59", "url": "https://www.uniprot.org/uniprotkb/A0A287AY59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AY59-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT65", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT65-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT65-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBH6", "url": "https://www.uniprot.org/uniprotkb/F1SBH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBH6-1", "url": "https://www.uniprot.org/uniprotkb/F1SBH6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFRDVAVDFTQEEWMLLSPAQRSLYREVMLENYSNMVSLGIPFSKPKLITQLEQGKETWREERKCPPATCSEPQPELHLCPFCPPDFSSRKFHVQHVLCRHPPWLLTCLCAEDPAQPRDPCSGDPKQPQQACAESPWNDRAEGQERESALPLFGKTNKRTPGVFSRPPQRQPESPRNGIRGVEVEASPAQTGNPEETDKLLKRIEVLGFGTVNCGECGLGFSKMTNLLSHQRIHSGEKPYVCGVCEKGFSLKKSLARHQKAHSGEKPIVCGECGRGFNRKSTLVIHERTHSGEKPYMCSECGRGFSQKSNLIIHQRTHSGEKPYVCQECGKGFSQKSAVVRHQRTHLEEKTIVCSDCGLGFSDRSNLISHQRTHSGEKPYACKECGRCFRQRTTLVNHQRTHSKEKPYVCGVCGHSFSQNSTLISHRRTHTGEKPYVCGVCGRGFSLKSHLNRHQNIHSGDKPIVCKDCGRGFSQQSNLIRHQRTHSGEKPMVCEECGRGFSQKSNLIAHQRTHSGEKPYVCRECGRGFSHQAGLIRHRRKHAREKPYTCRQCGLGFSSKSALITHKWVHSEAKPCLCRECGQGFTQKSHLVLHRRTHQGKKPYVCKTCGQGFSQKAHLSRHRRMKSVHHKPPLQSDSEACSGQSSDPFHSL", "length": 653, "header": "tr|A0A287AY59-1|A0A287AY59_PIG Isoform 1 of Zinc finger protein 133 OS=Sus scrofa OX=9823 GN=ZNF133 PE=3 SV=1 CANONICAL=A0A287AY59-1" }, "isoforms": [ { "isoform_ac": "A0A287AY59-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY59/entry#A0A287AY59-1", "sequence": { "sequence": "MAFRDVAVDFTQEEWMLLSPAQRSLYREVMLENYSNMVSLGIPFSKPKLITQLEQGKETWREERKCPPATCSEPQPELHLCPFCPPDFSSRKFHVQHVLCRHPPWLLTCLCAEDPAQPRDPCSGDPKQPQQACAESPWNDRAEGQERESALPLFGKTNKRTPGVFSRPPQRQPESPRNGIRGVEVEASPAQTGNPEETDKLLKRIEVLGFGTVNCGECGLGFSKMTNLLSHQRIHSGEKPYVCGVCEKGFSLKKSLARHQKAHSGEKPIVCGECGRGFNRKSTLVIHERTHSGEKPYMCSECGRGFSQKSNLIIHQRTHSGEKPYVCQECGKGFSQKSAVVRHQRTHLEEKTIVCSDCGLGFSDRSNLISHQRTHSGEKPYACKECGRCFRQRTTLVNHQRTHSKEKPYVCGVCGHSFSQNSTLISHRRTHTGEKPYVCGVCGRGFSLKSHLNRHQNIHSGDKPIVCKDCGRGFSQQSNLIRHQRTHSGEKPMVCEECGRGFSQKSNLIAHQRTHSGEKPYVCRECGRGFSHQAGLIRHRRKHAREKPYTCRQCGLGFSSKSALITHKWVHSEAKPCLCRECGQGFTQKSHLVLHRRTHQGKKPYVCKTCGQGFSQKAHLSRHRRMKSVHHKPPLQSDSEACSGQSSDPFHSL", "length": 653, "header": "tr|A0A287AY59-1|A0A287AY59_PIG Isoform 1 of Zinc finger protein 133 OS=Sus scrofa OX=9823 GN=ZNF133 PE=3 SV=1 CANONICAL=A0A287AY59-1" }, "locus": { "chromosome": "17", "start_pos": 26620275, "end_pos": 26613204, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054755.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054755.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048825.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048825.2" } ] } }, { "isoform_ac": "A0A5G2QT65-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY59/entry#A0A5G2QT65-1", "sequence": { "sequence": "AHMAFRDVAVDFTQEEWMLLSPAQRSLYREVMLENYSNMVSLGIPFSKPKLITQLEQGKETWREERKCPPATCSAEPQPELHLCPFCPPDFSSRKFHVQHVLCRHPPWLLTCLCAEDPAQPRDPCSGDPKQPQQACAESPWNDRAEGQERESALPLFGKTNKRTPGVFSRPPQRQPESPRNGIRGVEVEASPAQTGNPEETDKLLKRIEVLGFGTVNCGECGLGFSKMTNLLSHQRIHSGEKPYVCGVCEKGFSLKKSLARHQKAHSGEKPIVCGECGRGFNRKSTLVIHERTHSGEKPYMCSECGRGFSQKSNLIIHQRTHSGEKPYVCQECGKGFSQKSAVVRHQRTHLEEKTIVCSDCGLGFSDRSNLISHQRTHSGEKPYACKECGRCFRQRTTLVNHQRTHSKEKPYVCGVCGHSFSQNSTLISHRRTHTGEKPYVCGVCGRGFSLKSHLNRHQNIHSGDKPIVCKDCGRGFSQQSNLIRHQRTHSGEKPMVCEECGRGFSQKSNLIAHQRTHSGEKPYVCRECGRGFSHQAGLIRHRRKHAREKPYTCRQCGLGFSSKSALITHKWVHSEAKPCLCRECGQGFTQKSHLVLHRRTHQGKKPYVCKTCGQGFSQKAHLSRHRRMKSVHHKPPLQSDSEACSGQSSDPFHSL", "length": 656, "header": "tr|A0A5G2QT65-1|A0A287AY59_PIG Computationally mapped isoform of Zinc finger protein 133 OS=Sus scrofa OX=9823 GN=ZNF133 PE=3 SV=1 CANONICAL=A0A287AY59-1" }, "locus": { "chromosome": "17", "start_pos": 26620275, "end_pos": 26613198, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067769.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067769.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068116.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068116.1" } ] } }, { "isoform_ac": "F1SBH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY59/entry#F1SBH6-1", "sequence": { "sequence": 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"MNRKTKNRAMCGVRFSLLCLRLFLLVACYLVLLFHKEILGCSSVCQLCTGRQINCRNLGLSSIPKKFPESTVFLYLTGNNISHINENELTGLHSLIALYLDNSSIVYVYPKAFVHLRHLYFLYLNNNFIKRLDPGIFEGLSNLRNLYLQSNQISFVPRGVFHDLVSVQYLNLQRNRLTILGSGTFVGMVALRILDLSNNKILRISDSGFQHLENLNCLYLEGNNLTKVPSNAFEILKSLKRLSLSHNHIEAIQPFAFKGLVNLEYLLLKNSGIKNVTRNGFNGINNLRYLILSHNDLENLNSDTFSLLKNLIYLKLDRNRIISIDNDTFENMGASLKILNLSFNNLTDLHPRVLKPLSSLTHLQANSNPWECNCKLLGLRDWLASSAITLNIYCQSPPSMRGRALHYIKWTDFTNCVTSSTNASRAWAIKSLHIHHKTTALMMAWHRITTDGKHLENNESVTFWERIRTSPASRFFQENAFGNPLETTAVLPVQIQLTSPVNLNLEKNSALPVDAASVSGKTSLICTQEVEKLNEAFDILLAFFILACVLIVFLIYKVVQFKQKLKAPENSGDNRLEYYSFYQSARYNVTASFCSTSPNSLEGPGLEQIRLHKQIVPESEAQVILFEHSAL", "length": 631, "header": "tr|A0A287AYQ3-1|A0A287AYQ3_PIG Isoform 1 of Leucine rich repeat containing 70 OS=Sus scrofa OX=9823 GN=LRRC70 PE=4 SV=1 CANONICAL=A0A287AYQ3-1" }, "isoforms": [ { "isoform_ac": "A0A287AYQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYQ3/entry#A0A287AYQ3-1", "sequence": { "sequence": "MNRKTKNRAMCGVRFSLLCLRLFLLVACYLVLLFHKEILGCSSVCQLCTGRQINCRNLGLSSIPKKFPESTVFLYLTGNNISHINENELTGLHSLIALYLDNSSIVYVYPKAFVHLRHLYFLYLNNNFIKRLDPGIFEGLSNLRNLYLQSNQISFVPRGVFHDLVSVQYLNLQRNRLTILGSGTFVGMVALRILDLSNNKILRISDSGFQHLENLNCLYLEGNNLTKVPSNAFEILKSLKRLSLSHNHIEAIQPFAFKGLVNLEYLLLKNSGIKNVTRNGFNGINNLRYLILSHNDLENLNSDTFSLLKNLIYLKLDRNRIISIDNDTFENMGASLKILNLSFNNLTDLHPRVLKPLSSLTHLQANSNPWECNCKLLGLRDWLASSAITLNIYCQSPPSMRGRALHYIKWTDFTNCVTSSTNASRAWAIKSLHIHHKTTALMMAWHRITTDGKHLENNESVTFWERIRTSPASRFFQENAFGNPLETTAVLPVQIQLTSPVNLNLEKNSALPVDAASVSGKTSLICTQEVEKLNEAFDILLAFFILACVLIVFLIYKVVQFKQKLKAPENSGDNRLEYYSFYQSARYNVTASFCSTSPNSLEGPGLEQIRLHKQIVPESEAQVILFEHSAL", "length": 631, "header": "tr|A0A287AYQ3-1|A0A287AYQ3_PIG Isoform 1 of Leucine rich repeat containing 70 OS=Sus scrofa OX=9823 GN=LRRC70 PE=4 SV=1 CANONICAL=A0A287AYQ3-1" }, "locus": { "chromosome": "16", "start_pos": 41295505, "end_pos": 41293613, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043296.2", "url": 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"uniprot_canonical_ac": "A0A287AYR8-1", "uniprot_ac": "A0A287AYR8", "uniprot_id": "A0A287AYR8_PIG", "mass": { "chemical_mass": 30858.0, "monoisotopic_mass": 30858.0 }, "refseq": {}, "gene_names": [ { "name": "LDB3", "type": "recommended", "evidence": [ { "id": "A0A287AYR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AYR8" } ] } ], "protein_names": [ { "name": "LIM domain binding 3", "type": "synonym", "evidence": [ { "id": "A0A287AYR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AYR8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AYR8", "url": "https://www.uniprot.org/uniprotkb/A0A287AYR8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LDB3", "url": 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Activation by CXCL17 on lymphocytes activates the RhoA pathway, which regulates cytoskeletal dynamics and integrins, mediating lymphocyte recruitment into the respiratory, upper gastrointestinal, biliary and genito-urinary tracts.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AYU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AYU9#function" }, { "database": "UniProtKB", "id": "ARBA00094449", "url": "https://www.uniprot.org/uniprotkb/ARBA00094449#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AYU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AYU9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GPR25", "url": "https://www.uniprot.org/uniprotkb/A0A287AYU9", "locus": { "chromosome": "10", "start_pos": 23370418, "end_pos": 23369321, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000055738", "url": "https://www.ensembl.org/id/ENSSSCG00000055738" } ] } } ], "crossref": [ { "id": "110255658", "url": "https://www.ncbi.nlm.nih.gov/gene/110255658", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050119", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050119", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255658", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255658", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IYVFMDQ", "url": "https://omabrowser.org/oma/group/IYVFMDQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AYU9", "url": "https://www.orthodb.org/?gene=A0A287AYU9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10489", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10489", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10489:SF954", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10489:SF954", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020920161", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920161", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AYU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AYU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYU9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPTEPWSSSPAPAFWDYSGSGAPEELEVCAAPDLPYSYAYIPALYLAAFCVGLLGNAFVVRLLVERRGPRRLVDTFVLHLAAADLCFVLTLPLWAAAAARGGRWPFGEGLCKLSSFALAGTRCAGALLLAGLSVDRYLAVGRPLAARAWRTRRCALAACGGVWAAALAAGLPSLAFRGLRPLPGGGGSQCGEEPSDAFQGLSLLLLLLTLALPLAVTVVCYCRVLHRLRGPPHMGRARSRSLRIIFAVEGAFVGSWLPFCALRAVFHLARLGALPLPCPLLLALRWGLTVATCLAFVNSCANPLIYLLLDRSFRAQLRRRGACGRGDSMARGSSSASSLSGDDSSPFRSQGRWGPRALTSAAVA", "length": 365, "header": "tr|A0A287AYU9-1|A0A287AYU9_PIG Isoform 1 of C-X-C chemokine receptor GPR25 OS=Sus scrofa OX=9823 GN=GPR25 PE=3 SV=1 CANONICAL=A0A287AYU9-1" }, "isoforms": [ { "isoform_ac": "A0A287AYU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYU9/entry#A0A287AYU9-1", "sequence": { "sequence": "MRPTEPWSSSPAPAFWDYSGSGAPEELEVCAAPDLPYSYAYIPALYLAAFCVGLLGNAFVVRLLVERRGPRRLVDTFVLHLAAADLCFVLTLPLWAAAAARGGRWPFGEGLCKLSSFALAGTRCAGALLLAGLSVDRYLAVGRPLAARAWRTRRCALAACGGVWAAALAAGLPSLAFRGLRPLPGGGGSQCGEEPSDAFQGLSLLLLLLTLALPLAVTVVCYCRVLHRLRGPPHMGRARSRSLRIIFAVEGAFVGSWLPFCALRAVFHLARLGALPLPCPLLLALRWGLTVATCLAFVNSCANPLIYLLLDRSFRAQLRRRGACGRGDSMARGSSSASSLSGDDSSPFRSQGRWGPRALTSAAVA", "length": 365, "header": "tr|A0A287AYU9-1|A0A287AYU9_PIG Isoform 1 of C-X-C chemokine receptor GPR25 OS=Sus scrofa OX=9823 GN=GPR25 PE=3 SV=1 CANONICAL=A0A287AYU9-1" }, "locus": { "chromosome": "10", "start_pos": 23370415, "end_pos": 23369321, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097337.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097337.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077602.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077602.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AYU9", "url": "https://www.uniprot.org/uniprotkb/A0A287AYU9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255658", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255658", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MCI3-1", "protein_name": "C-X-C chemokine receptor GPR25", "gene_name": "GPR25", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRPTEPWSPSAGTAPWDYYSGSGAPDELEPEELCAARDLPYSHAYIPALYLAAFAVGLPGNAFVLWLLSGARGRRRLVDTFVQHLAAADLGFVLTLPLWAAAAARGGRWPFGEGLCKLSSFALAGTRCAGALLLAGLSVDRYLAVGRPLAARSPRSRRCALAACAGVWAAALAAGLPSLAFRRLRPLPGQDRGSQCGEESSDAFQGLSLLLLLLTLVLPLAVTVVCYCRVSRRLRGPPHLGRARSRSLRIILAVEGAFVGSWLPFCALRAVFHLASLGALPLPCRLLLALRWGLTVATCLAFVNSCANPLIYLLLDRSFRAQLRQRGACGRADRPARGSSSASSLSGEDGSPFRSPARAGGRAQTASAPSAVGP", "length": 374 }, "evidence": [ { "id": "A0A287AYU9", "url": "https://omabrowser.org/oma/group/A0A287AYU9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A7G6-1", "protein_name": "C-X-C chemokine receptor GPR25", "gene_name": "Gpr25", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQSTESWNSSWGTTMSWDYSGSGSLDQVELCPAWELPYSHAIISALYLAAFVVGLTGNTFVVWLLSRRRRPRRLVDTFVLHLAAADLGFVLTLPLWAVAEARGGLWPFGDGLCKISSFALAATRCAGALLLAGMSVDRYLAVGRPLNARPLRSARCVRASCSAVWAAAFLAGLPTLLYRRLQPSLDGEGSQCAEEPSDALQGVGLLLLLLTFALPLAVTLTCYWRVSRRLLRVRRARGNSLRIIFTVESVFVGSWLPFSILRALFYLARLRALPLPCSLLLALRWGLTVATCLAFVHSCANPVIYLLLDRSFRARVRFGPCTRVGRQVRRISSASSLSRDDSSVFWGRSSKANSALAAW", "length": 359 }, "evidence": [ { "id": "A0A287AYU9", "url": "https://omabrowser.org/oma/group/A0A287AYU9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O00155-1", "protein_name": "C-X-C chemokine receptor GPR25", "gene_name": "GPR25", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"length": 1976, "header": "tr|A0A287AYY5-1|A0A287AYY5_PIG Isoform 1 of Zinc finger C3H1-type containing OS=Sus scrofa OX=9823 GN=ZFC3H1 PE=4 SV=2 CANONICAL=A0A287AYY5-1" }, "isoforms": [ { "isoform_ac": "A0A287AYY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYY5/entry#A0A287AYY5-1", "sequence": { "sequence": 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"length": 1976, "header": "tr|A0A287AYY5-1|A0A287AYY5_PIG Isoform 1 of Zinc finger C3H1-type containing OS=Sus scrofa OX=9823 GN=ZFC3H1 PE=4 SV=2 CANONICAL=A0A287AYY5-1" }, "locus": { "chromosome": "5", "start_pos": 35670925, "end_pos": 35618001, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039112.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039112.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049087.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049087.2" } ] } }, { "isoform_ac": "A0A8W4FEJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYY5/entry#A0A8W4FEJ2-1", "sequence": { "sequence": "MATADTPAPASSGLSPKEEGELEDGEISDDDNNSQIRSRSSSSSSGGGLLPYPRRRPPHPARGGGSGGGGGSSSSSSSSQQQLRNFSRSRHASERGHLRGHSSYRPKEPFRSHPPSVRMPSSSLSESSPRPSFWERSHIALDRFRFRGRPYRGGSRWSRGRGGGERGGKPGGRPPLGGGAGSGFSSSQSWREPSPPRKSSKSFGRSPSRKQNYSSKNENCGEETFEDLLLKYKQIQLELECINKDEKLALSSKEENAQEDAKTLNFEDQTSTDNVSITKDSSKEVAPEEKTQVKTFQAFDLKPLRQKLTLPGDKNRLKKVKDGTKQLSLKSDTTESSQGVLFGVKEGFTPIPCLKF", "length": 356, "header": "tr|A0A8W4FEJ2-1|A0A287AYY5_PIG Computationally mapped isoform of Zinc finger C3H1-type containing OS=Sus scrofa OX=9823 GN=ZFC3H1 PE=4 SV=1 CANONICAL=A0A287AYY5-1" }, "locus": { "chromosome": "5", "start_pos": 35670925, "end_pos": 35663411, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101980.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101980.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076730.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076730.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FEJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEJ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9930044", "name": "", "url": 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} ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1209, "end_pos": 1211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1257, "end_pos": 1259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1288, "end_pos": 1290, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1329, "end_pos": 1331, "annotation": "n_glycosylation_sequon" }, { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" }, { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" }, { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" }, { "start_pos": 346, "end_pos": 348, "annotation": "n_glycosylation_sequon" }, { "start_pos": 647, "end_pos": 649, "annotation": "n_glycosylation_sequon" }, { "start_pos": 656, "end_pos": 658, "annotation": "n_glycosylation_sequon" }, { "start_pos": 699, "end_pos": 701, "annotation": "n_glycosylation_sequon" }, { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AYY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AYY5" }, { "id": "PF10650", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10650" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Putative zinc-finger", "eco_id": "ECO_0000259", "start_pos": 1172, "end_pos": 1190, "start_aa": "Phe", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1209, "end_pos": 1211 }, { "start_pos": 1257, 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"reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRRC47", "url": "https://www.uniprot.org/uniprotkb/A0A287AYY7", "locus": { "chromosome": "6", "start_pos": 65260793, "end_pos": 65271729, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039516", "url": "https://www.ensembl.org/id/ENSSSCG00000039516" } ] } } ], "crossref": [ { "id": "ENSSSCG00000039516", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039516", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100624753", "url": "https://www.ncbi.nlm.nih.gov/gene/100624753", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020825", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020825", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624753", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624753", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YDVKPPT", "url": "https://omabrowser.org/oma/group/YDVKPPT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AYY7", "url": "https://www.orthodb.org/?gene=A0A287AYY7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10947", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10947", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10947:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10947:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12799", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12799", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020950890", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950890", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AYY7", "url": "https://www.uniprot.org/uniprotkb/A0A287AYY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYY7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAAAVSEPWPELDLAERERRRELLLTGPGLEQRVREAGGRLPPRLFTLPLLHYLEVSGCGSLREPGPGLAQGLPQLHSLVLRRNALGPGLTPELGPLPALRVLDLSGNALEALPPGQGLGPAEPPSLPQLQSLNLSGNRLRELPADLARCAPRLQTLNLTGNRLDAFPAALFQPGALPLLSELAAADNCLRELSPGIAHLASLKTLDLSNNQLSEIPAELADCPKLKEINFRGNQLRDKRLEKMVCGCQTRSILEYLRAGGRGCCRGRGRAEGPEKEEGRRKRRERRKRDSGEGEEAAVDEASRLLLRVLHVSENPAPLTVRASPEVKDVRPFIVGAVVRGMDLRPGNALKRFLSCQTKLHEDLCEKRTAATIATHDLRAIRGPLLYTARPPQDLKIVPLGRREVKAKDLVRQLQLEAEEHRKQKKRQNVSGLHRYLHLLDGQERYPCLLDADGDAISFPPITNSEKTKIKKTTCDLFLEVTSAASLQICKDILDALILKMAELNKYTLENKEESSLSDPEADAEAGPPSDARVAPTAEQDRRAPLVVEQVRVVDQDGQLKVVYPSKTDLDLAAAHVTVTR", "length": 583, "header": "tr|A0A287AYY7-1|A0A287AYY7_PIG Isoform 1 of Leucine-rich repeat-containing protein 47 OS=Sus scrofa OX=9823 GN=LRRC47 PE=1 SV=1 CANONICAL=A0A287AYY7-1" }, "isoforms": [ { "isoform_ac": "A0A287AYY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYY7/entry#A0A287AYY7-1", "sequence": { "sequence": "MAAAAAVSEPWPELDLAERERRRELLLTGPGLEQRVREAGGRLPPRLFTLPLLHYLEVSGCGSLREPGPGLAQGLPQLHSLVLRRNALGPGLTPELGPLPALRVLDLSGNALEALPPGQGLGPAEPPSLPQLQSLNLSGNRLRELPADLARCAPRLQTLNLTGNRLDAFPAALFQPGALPLLSELAAADNCLRELSPGIAHLASLKTLDLSNNQLSEIPAELADCPKLKEINFRGNQLRDKRLEKMVCGCQTRSILEYLRAGGRGCCRGRGRAEGPEKEEGRRKRRERRKRDSGEGEEAAVDEASRLLLRVLHVSENPAPLTVRASPEVKDVRPFIVGAVVRGMDLRPGNALKRFLSCQTKLHEDLCEKRTAATIATHDLRAIRGPLLYTARPPQDLKIVPLGRREVKAKDLVRQLQLEAEEHRKQKKRQNVSGLHRYLHLLDGQERYPCLLDADGDAISFPPITNSEKTKIKKTTCDLFLEVTSAASLQICKDILDALILKMAELNKYTLENKEESSLSDPEADAEAGPPSDARVAPTAEQDRRAPLVVEQVRVVDQDGQLKVVYPSKTDLDLAAAHVTVTR", "length": 583, "header": "tr|A0A287AYY7-1|A0A287AYY7_PIG Isoform 1 of Leucine-rich repeat-containing protein 47 OS=Sus scrofa OX=9823 GN=LRRC47 PE=1 SV=1 CANONICAL=A0A287AYY7-1" }, "locus": { "chromosome": "6", "start_pos": 65271713, "end_pos": 65262465, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036719.2", "url": "https://www.ensembl.org/id/ENSSSCT00000036719.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049377.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049377.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 539, "start_aa": "Thr", "end_pos": 539, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr539", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AYY7", "url": "https://www.uniprot.org/uniprotkb/A0A287AYY7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624753", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624753", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZJ00-1", "protein_name": "Leucine rich repeat containing 47", "gene_name": "LRRC47", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAVWPEVAAAARERRRELTLQGAAVAERVAAGGGRLPAELLALPLLQSLQLSGCAALRELGPGLAAALPALHTLVLSGNALGPAGLGAGLGGPLPALRLLDLSGNGLEALPAALGGAGPPEEEGGEPAAFPQLRSLNLSGNRLRELGPGLARAAPQLQELLLSGNRLRALPGALLPPADAAPFPLLSRLEAADNEVEELSPDIAALPALKSLDVANNRLSALPAALADCPRLKDANLRGNPLRDRRLEKMVNGCQTRAVLEYLRSKGRADGGREETRRRKREKPQKKDGGDGERDEAEAVGKLLLKVLHVGDGPAPMVVRASPGVRDVRPYIVCCVLRGVQLRPGNALRRFLSAQTKLHEDICEKRTAATIATHDLQLVKGPLTYGVQPPAELKITPLGRKEIRAKDLLRQLQMEAEEQRKQKKRQNVSGLHRYLQLLDGKDNYPCLVDAEGVVISFPPITNSEKTKIRKTTRDLFLEVTSDTSLQICKDVMDALILKIAELNRFTLENKEEGSGSDDESDALCGPVNVNPNQNTQQPLVVEQVRVVDMDGNLKVLYPSKTDLATVSSLLTVIR", "length": 575 }, "evidence": [ { "id": "A0A287AYY7", "url": "https://omabrowser.org/oma/group/A0A287AYY7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1LT49-1", "protein_name": "Leucine-rich repeat-containing protein 47", "gene_name": "Lrrc47", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "IIISGTRRKGAALRKRRTVGVMAAAMAVSEAWPELELAERERRRELLLTGPGLEERVKAAGGRLPPRLFTLPLLHYLEVSGCGSLRAPGPGLAQGLPQLHSLVLRRNALGPGLSPELGPLPALRVLDLSGNALETLPPGEGLGPAEPPGLPQLQSLNLSGNRLRELPADLARCAPRLQSLNLTGNCLDSFPAELFRPGALPLLSELAAADNCLRELSPDIAHLASLKTLDLSNNQLTEIPAELADCPKLKEINFRGNRLRDKRLEKMVGGCQTKSILEYLRAGGRGGRSKGRQEGSEKEDRKKKRDRKQRRESGEGEEEVADSARLMLKVLHVSENPTPLTVRVSPEVRDVRPYIVGAVVRGMDLQPGNALRRFLNSQTKLHDDLCEKRTAATIATHDLQAVRGPLLYAARPPEDLKIVPLGRKEAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGKENYPCLVDAEGDVISFPPITNSEKTKIKRTTCSVFLEVTSATSLQLCKDIMDSLVLKMAELNKSTSENKEEDMLSGTETDASHGLSDPNLNPRAGKDGQCPLVVEQVRVVDLEGSLKVVYPSKADLVTLPPYVTVVR", "length": 601 }, "evidence": [ { "id": "A0A287AYY7", "url": "https://omabrowser.org/oma/group/A0A287AYY7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q505F5-1", "protein_name": "Leucine-rich repeat-containing protein 47", "gene_name": "Lrrc47", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAMAVSEAWPELELAERERRRELLLTGPGLEERVKAAGGRLPPRLFTLPLLHYLEVSGCGSLRAPGPGLAQGLPQLHSLVLRRNALGPGLSPELGPLPALRVLDLSGNALETLPPGEGLGPAEPPGLPQLQSLNLSGNRLRELPADLARCAPRLQSLNLTGNRLDAFPPELFRPGALPLLSELAAADNCLRELSPDIAHLASLKTLDLSNNQLTEIPAELADCPKLKEINFRGNRLRDKRLEKMVGGCQTKSILEYLRAGGRGGRSKGRQEASEKEDRKKRRERKQHRESGEGEEEVADSARLMLKVLHVSENPTPLTVRVSPEVKDVRPYIVGAIVRGMDLQPGNALRRFLNSQTKLHDDLCEKRTAATIATHDLQAVRGPLLYAARPPEDLKIVPLGRKEAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGKENYPCLVDAEGDVISFPPITNSEKTKIKKTTCNLFLEVTSATSLQLCKDIMDSLILRMAELSKSTSENKEEDMLSGTEADAGCGLSDPNLTLSSGKDGQCPLVVEQVRVVDLEGSLKVVYPSKTDLITLPPHVTVVR", "length": 581 }, "evidence": [ { "id": "A0A287AYY7", "url": "https://omabrowser.org/oma/group/A0A287AYY7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N1G4-1", "protein_name": "Leucine-rich repeat-containing protein 47", "gene_name": "LRRC47", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAAVSESWPELELAERERRRELLLTGPGLEERVRAAGGQLPPRLFTLPLLHYLEVSGCGSLRAPGPGLAQGLPQLHSLVLRRNALGPGLSPELGPLPALRVLDLSGNALEALPPGQGLGPAEPPGLPQLQSLNLSGNRLRELPADLARCAPRLQSLNLTGNCLDSFPAELFRPGALPLLSELAAADNCLRELSPDIAHLASLKTLDLSNNQLSEIPAELADCPKLKEINFRGNKLRDKRLEKMVSGCQTRSILEYLRVGGRGGGKGKGRAEGSEKEESRRKRRERKQRREGGDGEEQDVGDAGRLLLRVLHVSENPVPLTVRVSPEVRDVRPYIVGAVVRGMDLQPGNALKRFLTSQTKLHEDLCEKRTAATLATHELRAVKGPLLYCARPPQDLKIVPLGRKEAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGNENYPCLVDADGDVISFPPITNSEKTKVKKTTSDLFLEVTSATSLQICKDVMDALILKMAEMKKYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGKDGPSLLVVEQVRVVDLEGSLKVVYPSKADLATAPPHVTVVR", "length": 583 }, "evidence": [ { "id": "A0A287AYY7", "url": "https://omabrowser.org/oma/group/A0A287AYY7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A287AYY7", "url": "https://www.uniprot.org/uniprotkb/A0A287AYY7" } ], "pmid": "" }, { "name": "phenylalanine-tRNA ligase activity", "id": "GO:0004826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004826", "evidence": [ { "database": "UniProtKB", "id": "A0A287AYY7", "url": "https://www.uniprot.org/uniprotkb/A0A287AYY7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "phenylalanyl-tRNA aminoacylation", "id": "GO:0006432", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006432", "evidence": [ { "database": "UniProtKB", "id": "A0A287AYY7", "url": "https://www.uniprot.org/uniprotkb/A0A287AYY7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 136, "end_pos": 138, "annotation": "n_glycosylation_sequon" }, { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 431, "end_pos": 433, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AYY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AYY7" }, { "id": "SM00873", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00873" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B3/B4 tRNA-binding", "eco_id": "ECO_0000259", "start_pos": 332, "end_pos": 508, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 539 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 136, "end_pos": 138 }, { "start_pos": 160, "end_pos": 162 }, { "start_pos": 431, "end_pos": 433 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AYZ1-1", "uniprot_ac": "A0A287AYZ1", "uniprot_id": "A0A287AYZ1_PIG", "mass": { "chemical_mass": 24587.0, "monoisotopic_mass": 24587.0 }, "refseq": { "ac": "XP_020923406", "name": "RPA-interacting protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923406" }, "gene_names": [ { "name": "RPAIN", "type": "recommended", "evidence": [ { "id": "A0A287AYZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1" } ] }, { "name": "RPAIN", "type": "synonym", "evidence": [ { "id": "XP_020923406", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923406" } ] } ], "protein_names": [ { "name": "RPA interacting protein", "type": "synonym", "evidence": [ { "id": "A0A287AYZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1/entry#names_and_taxonomy" } ] }, { "name": "RPA-interacting protein", "type": "synonym", "evidence": [ { "id": "XP_020923406", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923406" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AYZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPAIN", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1", "locus": { "chromosome": "12", "start_pos": 51553131, "end_pos": 51562743, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036311", "url": "https://www.ensembl.org/id/ENSSSCG00000036311" } ] } } ], "crossref": [ { "id": "A0A287AYZ1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AYZ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036311", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036311", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110256104", "url": "https://www.ncbi.nlm.nih.gov/gene/110256104", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028155", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028155", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110256104", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256104", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ACDSWTV", "url": "https://omabrowser.org/oma/group/ACDSWTV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AYZ1", "url": "https://www.orthodb.org/?gene=A0A287AYZ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31742", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31742", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31742:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31742:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14766", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14766", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14767", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14767", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14768", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14768", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020923406", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923406", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AYZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDT2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDT2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE00-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGZ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYR0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYS8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYS8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEASGSRHRSLYKLVGSPPWKAAFRQGCLERMRNSRDRLLNRYRQTGSSMSGGARNSLLVQEVMEEEWNALQSAKSWPGALAQLEEPMDLAVLEEIQQELIDQELSIISEYEKSLQFDEKCLSVMLAEWEANPLICPVCTKYNLRIASGVVLCQCGLYIQSHSPDLTEQKLRACLEDSVNEHSAHCSHTPEFSVTEGTEEKSSLLMSCLACDTWAVIL", "length": 219, "header": "tr|A0A287AYZ1-1|A0A287AYZ1_PIG Isoform 1 of RPA interacting protein OS=Sus scrofa OX=9823 GN=RPAIN PE=4 SV=1 CANONICAL=A0A287AYZ1-1" }, "isoforms": [ { "isoform_ac": "A0A287AYZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1/entry#A0A287AYZ1-1", "sequence": { "sequence": "MAEASGSRHRSLYKLVGSPPWKAAFRQGCLERMRNSRDRLLNRYRQTGSSMSGGARNSLLVQEVMEEEWNALQSAKSWPGALAQLEEPMDLAVLEEIQQELIDQELSIISEYEKSLQFDEKCLSVMLAEWEANPLICPVCTKYNLRIASGVVLCQCGLYIQSHSPDLTEQKLRACLEDSVNEHSAHCSHTPEFSVTEGTEEKSSLLMSCLACDTWAVIL", "length": 219, "header": "tr|A0A287AYZ1-1|A0A287AYZ1_PIG Isoform 1 of RPA interacting protein OS=Sus scrofa OX=9823 GN=RPAIN PE=4 SV=1 CANONICAL=A0A287AYZ1-1" }, "locus": { "chromosome": "12", "start_pos": 51562338, "end_pos": 51553239, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066010.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066010.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049366.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049366.1" } ] } }, { "isoform_ac": "A0A5G2QDT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1/entry#A0A5G2QDT2-1", "sequence": { "sequence": "MAEASGSRHRSLYKLVGSPPWKAAFRQGCLERMRNSRDRLLNRYRQTGSSMSGGARNSLLVQEVMEEEWNALQSAKSWPGALAQLEEPMDLAVLEEIQQELIDQVSR", "length": 107, "header": "tr|A0A5G2QDT2-1|A0A287AYZ1_PIG Computationally mapped isoform of RPA interacting protein OS=Sus scrofa OX=9823 GN=RPAIN PE=4 SV=2 CANONICAL=A0A287AYZ1-1" }, "locus": { "chromosome": "12", "start_pos": 51562338, "end_pos": 51554954, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088829.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088829.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061797.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061797.2" } ] } }, { "isoform_ac": "A0A5G2QE00-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1/entry#A0A5G2QE00-1", "sequence": { "sequence": "MAEASGSRHRSLYKLVGSPPWKAAFRQGCLERMRNSRDRLLNRYRQTGSSMSGGARNSLLVQEVMEEEWNALQSAKSWPGALAQLEEPMDLAVLEEIQQELIDQELSIISEYEKSLQFDEKCLSVMLAEWEANPLICPVCTKLVILGP", "length": 148, "header": "tr|A0A5G2QE00-1|A0A287AYZ1_PIG Computationally mapped isoform of RPA interacting protein OS=Sus scrofa OX=9823 GN=RPAIN PE=4 SV=1 CANONICAL=A0A287AYZ1-1" }, "locus": { "chromosome": "12", "start_pos": 51562338, "end_pos": 51553247, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072606.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072606.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062873.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062873.1" } ] } }, { "isoform_ac": "A0A5G2QGZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1/entry#A0A5G2QGZ7-1", "sequence": { "sequence": "MAEASGSRHRSLYKLVGSPPWKAAFRQGCLERMRNSRDRLLNRYRQTGSSMSGGARNSLLVQEVMEEEWNALQSAKSWPGALAQLEEPMDLAVLEEIQQELIDQGL", "length": 106, "header": "tr|A0A5G2QGZ7-1|A0A287AYZ1_PIG Computationally mapped isoform of RPA interacting protein OS=Sus scrofa OX=9823 GN=RPAIN PE=4 SV=2 CANONICAL=A0A287AYZ1-1" }, "locus": { "chromosome": "12", "start_pos": 51562338, "end_pos": 51553261, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083372.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083372.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064053.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064053.2" } ] } }, { "isoform_ac": "A0A5G2QYR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1/entry#A0A5G2QYR0-1", "sequence": { "sequence": "MAEASGSRHRSLYKLVGSPPWKAAFRQGCLERMRNSRDRLLNRYRQTGSSMSGGARNSLLVQEVMEEEWNALQSAKSWPGALAQLEEPMDLAVLEEIQQELIDQELSIISEYEKSLQFDEKCLSVMLAEWEANPLICPVCTKYNLRIASGVVLCQCGLYIQSHSPDLTEQKLRACLEDSVNEHSAHCSHTPEFSVTEGTEEKSSLLMSCLVSLPHDPGRRGPWVILFLPW", "length": 230, "header": "tr|A0A5G2QYR0-1|A0A287AYZ1_PIG Computationally mapped isoform of RPA interacting protein OS=Sus scrofa OX=9823 GN=RPAIN PE=4 SV=1 CANONICAL=A0A287AYZ1-1" }, "locus": { "chromosome": "12", "start_pos": 51562338, "end_pos": 51554758, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086564.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086564.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069283.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069283.1" } ] } }, { "isoform_ac": "A0A5G2QYS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1/entry#A0A5G2QYS8-1", "sequence": { "sequence": "MAEASGSRHRSLYKLVGSPPWKAAFRQGCLERMRNSRDRLLNRYRQTGSSMSGGARNSLLVQEVMEEEWNALQSAKSWPGALAQLEEPMDLAVLEEIQQELIDQELSIISEYEKSLQFDEKCLSVMLAEWEANPLICPVCTKYNLRIASGVVLCQCGLYIQSHACDTWAVIL", "length": 172, "header": "tr|A0A5G2QYS8-1|A0A287AYZ1_PIG Computationally mapped isoform of RPA interacting protein OS=Sus scrofa OX=9823 GN=RPAIN PE=4 SV=1 CANONICAL=A0A287AYZ1-1" }, "locus": { "chromosome": "12", "start_pos": 51562338, "end_pos": 51553239, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068731.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068731.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063380.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063380.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDT2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDT2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110256104", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256104", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1QKJ6-1", "protein_name": "RPA-interacting protein isoform X1", "gene_name": "rpain", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDAVQRHRSMYKGTTPPWKETYRKRCVERLKNSRSRLLEKFRQMTDSSGDGKRSLLVQEVMEEEWSALKASHSLPSLWNGNPIPDVYTQQQEFDELSALEEIQQELIAQELAILEEYNNSMRYEEQYLDSVLEGMDQGGQIICPVCHANNLTVNSHFTMCSCGLYVNTIGRNVTSEVLQNLLERRVNEHMEDCLHNPSFSMAFNTDQSTNLMISCKVCDYLSVVL", "length": 225 }, "evidence": [ { "id": "A0A287AYZ1", "url": "https://omabrowser.org/oma/group/A0A287AYZ1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q4G2Y1-1", "protein_name": "RPA-interacting protein", "gene_name": "Rpain", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAESSGSPHRLLYKQVGSPPWKETFRQGCLERMRNSRHKLLNRYRQAAGSTLGTASDRLLVQEVMEEEWNSLQSVENCPEALLQLELPLNLAVLQDIEQELWNEEKSIISEYEKGLQFDESCLNSMLAEWEANPLICPVCIKYNLRIMNSVVTCPCGLHIPSHSTDLTEQKLRACLEGNVNEHSAHCPHIPEFSVTGGTEEKPSLLMSCLACDTWAVIL", "length": 219 }, "evidence": [ { "id": "A0A287AYZ1", "url": "https://omabrowser.org/oma/group/A0A287AYZ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86UA6-1", "protein_name": "RPA-interacting protein", "gene_name": "RPAIN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDEKCLSIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSHSSELTEQKLRACLEGSINEHSAHCPHTPEFSVTGGTEEKSSLLMSCLACDTWAVIL", "length": 219 }, "evidence": [ { "id": "A0A287AYZ1", "url": "https://omabrowser.org/oma/group/A0A287AYZ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CWY9-1", "protein_name": "RPA-interacting protein", "gene_name": "Rpain", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAESSGSPHRLLYKQVGSPHWKETFRQGCLERMRNSRHRLLNKYRQAAGSTPGTASDRLLVQEVMEEEWASLQSVENCPEALLQLELPLDLAVLQDIEQELCNEEKSIISEYEEDLEFDESCLRRMLAEWEANSLICPVCIKYNLRIMNSVVTCPCGLHIPVHSTDLTEQKLRACLEENVNEHSVHCPHTPVFSVTGGTEEKPSLLMNCLTCDTWAVIL", "length": 219 }, "evidence": [ { "id": "A0A287AYZ1", "url": "https://omabrowser.org/oma/group/A0A287AYZ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287AYZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287AYZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287AYZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein import into nucleus", "id": "GO:0006606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006606", "evidence": [ { "database": "UniProtKB", "id": "A0A287AYZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AYZ1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 219, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AYZ1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AYZ1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AYZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AYZ1" }, { "id": "PF14768", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14768" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RPA-interacting protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 136, "end_pos": 216, "start_aa": "Ile", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AYZ1", "database": "UniProtKB", "url": 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"url": "https://www.uniprot.org/uniprotkb/A0A287AZ59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH81", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH81-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRAGRQFRALLWKNWLSRIRHPVLSLAEFFWPCILFMILTVLRFQEPPRERDNCYLQPRDLPSQGVFPFVRGLLCNTGSRCRNTSYERSMEHHFRSSRLRSAAAPHRKVDDLAFLKEMQDLAKEVYEVMDEARNLQKLWVERSQTPDSSFGSSFITMDLNKTEEVLAKLESLHRQPHVWEFLLLLPRLRSDNDQSEDGIRGAEHLLQAAVNSFSSLEDLDWLPRSHTFARVSKMVLNVAISMLTFLQERQVATTESGYTLSLIELVWDPQKVRADLKSQFGFGDLHTDRILNYSAQLQEIPTDSSLERMVCSALSGSSEDEGDRGGHPGDCDPRWSAAKNYLVREVSQLHLYKQVFAQWRRGGLLQKALAGPSRGLEALRNQSAEGSPLWKVAEALHTAFLLLNDTLAASGPQGHHTSTRIFLHLQRLQRVVTSLPPGPALGSLLQLDGALRKVLARTSYFVQEVLVRLETSANGSNPGGPGQWKLEKAVLFGQLEQLLMKNATGLCLSGHLSEVGTLLRPGHPSVQEGLEGLEGLVCGHNSSREASALHKLLESVEDANRLLQEVVTGHTNTTVLEPEDSPGWQDLDTQLSAASLPCSRLLWLLGAEVSQGDCKDQLMSIVLFHTLKKVQLFLEQTPSWKAFLGFVRKTCELARFVNKQESFQDAFSEESPCYEENMDWKIISDNYFAFLNNLLKTPKTSLSRLLNSTKELLMVEKKLQPLEDEQINLLLSFMEFLEKLLVPNPFDSSSVPKFHTLLSLPESILNISYLWIDHLTRLESDTAGVDTQKLLESGKEMIEKVQTLENLWRKKESRNSLRFLELLLYEMHPKLLELWIYDISARERAKLEVLSTLLNFSDPEDERILSKSFSFSQLFHSDGRQSPARKMDFVHLSEIVINSLHELGLLRQEQVSDAVGTVHALRNASKLFSALSEPQKKDIGKILTHVYLHVFQDKDSALFLQIYSSFYQYVYTFLSIQSRESLLPFLTQISEHILDITRQFNFQNISKAFAFFYETTEVLGGISQVPYCQQLLSIFNFLELQAQSLMSKEAPEMQGIHATLTGLKQLFATDADFRNSVFQYVSQLLHGSGEALLGNECFVLNNKSLPSVHYSVEKGSASRLPWAQMLSNLTAEGSAFPRFAAVHCTVSWLQMWTGICRSASQVFRLNLGVLTSLHVGLTQLLDELESAVPVPQTCRGRLPTHHPAGLILHLFRNVTQADGFHSWDDFLNLRGLWVALSDGLVRVKLLNLDHVEKSLLTMETALAQLKSFPLHTNGSREFLSSLLDVFIELSNTSAYIDRNVPLRNHFLSKDLTDYEVRFADVLANLRETISFLKNVSHDQDLLSCADIFQNVTEFILEGGLFYANTSQRAFHILAMLNSTFSSADTVSRLKGCSRWIDIITHLCRMLSNSSFSQGRLQGVVRRFRDAEDKMNSALKLVTWVLNVMMEPDCSLNTSNMNCVNSYLKNMTDFLNVILTAVLEKEEVPKFEILLTVLNDSTNQVRLIISNVTRDFDAAPQSNWKHFTELILKPTEMSAEMPLLFQNIWLHLVALGKKIQTLAKASSPPTLKNNTSSETEKILNAFATSPKEKEMHGLGDSFYQLASYLAFNLSHDPQSSPQITSPEIITKAVGLSIQLMRDAFNFLRPSVYHNIPQEPEKLQVLKTVTSLMHTLKNADIHLLAEQLGQVGEGLMNFFRNISRLGSGTLGVSFFVDLMEKFVDSSHSWNVNHLLRLSRLFPRGDVDTVVDLYYLLPHAVGLLQRVVDKNVTEALKDAYNFTLLHGISLSDVTKEDFAIVIKTLLDTTELISDNPEILPEALTCLPVFWCWNRTASGLQQHPKSEACNAHELTSLFYSKVAGILAHLHLSPLSEDSPCLNETSQREVSRKVACVVHELMDWMSILLELSEAFHVKTSLVETVQGFWYKALPFVLSSGNQSHGSISELCPGGPVKQVALQVIGKLKNVDLTKVTSDENLLNKLASLNKTLNVTEGAEAPVRNTSSLNLGRIIDLLSRDENLENRTNSVVSLFMTLLNANLTGRSLEALSSFIKETGATYNFEALWLELEQIMTDLTHDFRIRSLFSEINKEMQMINSVTLQNITLQLAPFLERLDSSSLKILEIIEDFLLAIKNRFHKYANKDDSKMIQTFLLTANQSLPDDTALWTKNIAAFLSHLENISREDNFDVALLTHLLNQEQPTNFSVVQLLLESFLINSINNLVESSQEAVLNVSDADLQIMNFINLPLNHTQSEDGERTPLPPRSLVDFMEQLWKTFFSFLVKAHSGNRVSLLLKDLRRNIIAEMSIVPKEKLLELLKLDPFLTSTKTDRWVPLLSALKESVYHLTESSFTLDDGEFCSAEVRERVFTARLGKPQRRTRWTVVWILRTFPNSTKILGHTSHGHASDLPIKDFCALYPLLQEVILATLASLDRATLETTKGFLGVIPGGGGESPVLDALLEMSNPLAMLGRADADMRGLATWVHSRVTLLKLAKNISGKAATVFKTGPGIEPASLWILVGFCDLWACTCVTTVPARRRAVLSLQSSPSNAGVCFSLSAVEACRIFQQPLKPLGASVTLQKVKLLVLRLLVIFAENPPLATDILCATLSCQQGRIRSLVLSALQGVILVHDHSQELEKTWAFPHQLSCEGLRRNLSSTLESFRSSLEKAREQGCECGRRPAPGPQLVQSLEKILVSGNPIVTFLSNFTVTEDVKVKDLMQNVTRVTEELRSSLGISAETIGSILEANLSHSKVLQSALTVALSGSCDQDSLRLLLELPEDGKSESATKELCGLPGATVYSLVVLMARNLDPRNFIYKTLLPSEARGLLSSLLHVISRLSRLLPKASYVLGHLPEFLQALKVTALLDVPDFEQVSDPDQARSSAFGTFQSLMKMVCKEQASFFSRSDTFMNLPRVDELLEDDKEKFNIPEDSTPFCLKLYQEILRSPNGALVWSFLKPVLHGKILYTPNTQDINKVIQKANYTFDFVDKLKTLSETLLNMSSDFQSSGTSQMLNQLQEALKNKFVRRFVESQLHVSIDKLTENLQKLGGKLGRMFSHTSAGRVRSLGRVLVNLSSCVVLNRFQALESVATLESKAQELMRKNSFLASVIFSNSFVGKNLSSQPPPLPPEVAYTIRTSVLYSMRTDVVRNPFWKFHPQSLPADGFKYNYIFVPLQDMIERAIVSVQTGQEALGPGTQAQAIPYPCHTSDLFLNNVGFFFPLIMMLTWMVSVASTVRKLVYEREIQLEEYMRVMGVSPAVHFLAWLLENVAVLTVSSAALAVILKTSGIFRYSNGCIIFLFLLDFGVSVVMLSYFLSAFFSRANTAALCTSLVYTVSFLPYIVLLVLHNQLSAVMQTFLCLLSTTAFGQGVFFVTFLEGQEAGMQWDNMYESPEQAGMTFGWVCWMILFDSGLYFVCGWYLSNLIPGAFGLRKPWYFPFTSSYWKDVCGLVVKRPCSPGPNLFFFGENVDDKGSSLQNGEGRLEGPPPGVALLSVTKEHEHRQAAVRDLTLTFHRDQITALLGTNGAGKSTVISLLTGLYPPTSGTIIVNGKNLQTELEAVRAELGVCPQRDVLFDTLTVLEHLLLFASLKAPQGPQEELRRQVDRTLRDVGLVQHRHKPTRALSGGMKRKLSVGIAFLGASRTVVLDEPTSGVDPCSRRGIWDILLKYREGRTVIFSTHHLDEAEALSDRVAVLQRGRLLCWGPPSSLTQAHSQGLRLTLTRQPPVLEVDNLKDTACATSLIQTYIPRASLRGCSGGELSYVIPQDADRACFRGLFQALDQNLQHLHLTGYGISDTTLEEVFLNLLQDSKKPSEAAPRMDLEPPEPSPGHYGARARTPLVQGGPLLLAQMAALLVKRLRHAGRAWKGTVANLLLPVLFVALAMGLFMVRPLAVDYPPLKLTPGHYDGAETYFFRDNSSCWRLDPSSHLEARKLCDCLTCPNGSTRAPYLTNGLGHRLLNLSGLRLEEYLLAPTEKPRLGGWSFGVRDPGQGQDAHSNISKPKPLAKVWYNQKGFHSLPSYLNHLNNLILWRFLPPGVDWRQYGITLYSHPYGGALLNEDKILESIRQCGVALCIVLGFSILSASVGSSVVRDRVTGVKRLQHISGLGYRTYWFTNFLFDMLLYLVSVCLCVAVIAAFQLTAFTFRQNLAATALLLALFGYASLPWMYLISRIFSSSDVAFISYISLNFIFGLCTMLMTVMPRLLAIVSKAQHLQNIYDALKWVFTVFPQFCLGQGLVQLCYNQIKYDLTHNFGVDSYVSPFEMNFLGWIFVQLAGQGTVLLLLRMLLHWDLWQRGHSAIQGTVTSSQDIDVEKEQMRVLKGRTSGDILVICNLSKSYTRFFKRTTAVQDISLGIRRGECFGLLGVNGAGKTTTFRMLNGDLRPTSGHAVIRTPMGEDVDLSLAGAAGVRIGYCPQQDALDELLTGWEHLHHYCSLRGIPKQCIPQVTADLVRRLHLEAHVDKPVAAYSGGTKRKLSTALALLGQPDLLFLDEPSSGMDPCSKRHLWDAVMKEVQEGCAVVLSSHSMDECEALCTRLAVVVDGSFRCLGSPQHIKNRFGDGYTVKIWLCKDANQHSAVSDCLKLYFPGIQFKGQHLNLLEYLVPKRWGCLADLFTVLETNKHSLRIEHYSVNQTTLEQVFINFATEQQSPPACPDLSADHHCPQHLPI", "length": 4656, "header": "tr|A0A287AZ59-1|A0A287AZ59_PIG Isoform 1 of ATP binding cassette subfamily A member 13 OS=Sus scrofa OX=9823 GN=ABCA13 PE=4 SV=2 CANONICAL=A0A287AZ59-1" }, "isoforms": [ { "isoform_ac": "A0A287AZ59-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ59/entry#A0A287AZ59-1", "sequence": { "sequence": "MGRAGRQFRALLWKNWLSRIRHPVLSLAEFFWPCILFMILTVLRFQEPPRERDNCYLQPRDLPSQGVFPFVRGLLCNTGSRCRNTSYERSMEHHFRSSRLRSAAAPHRKVDDLAFLKEMQDLAKEVYEVMDEARNLQKLWVERSQTPDSSFGSSFITMDLNKTEEVLAKLESLHRQPHVWEFLLLLPRLRSDNDQSEDGIRGAEHLLQAAVNSFSSLEDLDWLPRSHTFARVSKMVLNVAISMLTFLQERQVATTESGYTLSLIELVWDPQKVRADLKSQFGFGDLHTDRILNYSAQLQEIPTDSSLERMVCSALSGSSEDEGDRGGHPGDCDPRWSAAKNYLVREVSQLHLYKQVFAQWRRGGLLQKALAGPSRGLEALRNQSAEGSPLWKVAEALHTAFLLLNDTLAASGPQGHHTSTRIFLHLQRLQRVVTSLPPGPALGSLLQLDGALRKVLARTSYFVQEVLVRLETSANGSNPGGPGQWKLEKAVLFGQLEQLLMKNATGLCLSGHLSEVGTLLRPGHPSVQEGLEGLEGLVCGHNSSREASALHKLLESVEDANRLLQEVVTGHTNTTVLEPEDSPGWQDLDTQLSAASLPCSRLLWLLGAEVSQGDCKDQLMSIVLFHTLKKVQLFLEQTPSWKAFLGFVRKTCELARFVNKQESFQDAFSEESPCYEENMDWKIISDNYFAFLNNLLKTPKTSLSRLLNSTKELLMVEKKLQPLEDEQINLLLSFMEFLEKLLVPNPFDSSSVPKFHTLLSLPESILNISYLWIDHLTRLESDTAGVDTQKLLESGKEMIEKVQTLENLWRKKESRNSLRFLELLLYEMHPKLLELWIYDISARERAKLEVLSTLLNFSDPEDERILSKSFSFSQLFHSDGRQSPARKMDFVHLSEIVINSLHELGLLRQEQVSDAVGTVHALRNASKLFSALSEPQKKDIGKILTHVYLHVFQDKDSALFLQIYSSFYQYVYTFLSIQSRESLLPFLTQISEHILDITRQFNFQNISKAFAFFYETTEVLGGISQVPYCQQLLSIFNFLELQAQSLMSKEAPEMQGIHATLTGLKQLFATDADFRNSVFQYVSQLLHGSGEALLGNECFVLNNKSLPSVHYSVEKGSASRLPWAQMLSNLTAEGSAFPRFAAVHCTVSWLQMWTGICRSASQVFRLNLGVLTSLHVGLTQLLDELESAVPVPQTCRGRLPTHHPAGLILHLFRNVTQADGFHSWDDFLNLRGLWVALSDGLVRVKLLNLDHVEKSLLTMETALAQLKSFPLHTNGSREFLSSLLDVFIELSNTSAYIDRNVPLRNHFLSKDLTDYEVRFADVLANLRETISFLKNVSHDQDLLSCADIFQNVTEFILEGGLFYANTSQRAFHILAMLNSTFSSADTVSRLKGCSRWIDIITHLCRMLSNSSFSQGRLQGVVRRFRDAEDKMNSALKLVTWVLNVMMEPDCSLNTSNMNCVNSYLKNMTDFLNVILTAVLEKEEVPKFEILLTVLNDSTNQVRLIISNVTRDFDAAPQSNWKHFTELILKPTEMSAEMPLLFQNIWLHLVALGKKIQTLAKASSPPTLKNNTSSETEKILNAFATSPKEKEMHGLGDSFYQLASYLAFNLSHDPQSSPQITSPEIITKAVGLSIQLMRDAFNFLRPSVYHNIPQEPEKLQVLKTVTSLMHTLKNADIHLLAEQLGQVGEGLMNFFRNISRLGSGTLGVSFFVDLMEKFVDSSHSWNVNHLLRLSRLFPRGDVDTVVDLYYLLPHAVGLLQRVVDKNVTEALKDAYNFTLLHGISLSDVTKEDFAIVIKTLLDTTELISDNPEILPEALTCLPVFWCWNRTASGLQQHPKSEACNAHELTSLFYSKVAGILAHLHLSPLSEDSPCLNETSQREVSRKVACVVHELMDWMSILLELSEAFHVKTSLVETVQGFWYKALPFVLSSGNQSHGSISELCPGGPVKQVALQVIGKLKNVDLTKVTSDENLLNKLASLNKTLNVTEGAEAPVRNTSSLNLGRIIDLLSRDENLENRTNSVVSLFMTLLNANLTGRSLEALSSFIKETGATYNFEALWLELEQIMTDLTHDFRIRSLFSEINKEMQMINSVTLQNITLQLAPFLERLDSSSLKILEIIEDFLLAIKNRFHKYANKDDSKMIQTFLLTANQSLPDDTALWTKNIAAFLSHLENISREDNFDVALLTHLLNQEQPTNFSVVQLLLESFLINSINNLVESSQEAVLNVSDADLQIMNFINLPLNHTQSEDGERTPLPPRSLVDFMEQLWKTFFSFLVKAHSGNRVSLLLKDLRRNIIAEMSIVPKEKLLELLKLDPFLTSTKTDRWVPLLSALKESVYHLTESSFTLDDGEFCSAEVRERVFTARLGKPQRRTRWTVVWILRTFPNSTKILGHTSHGHASDLPIKDFCALYPLLQEVILATLASLDRATLETTKGFLGVIPGGGGESPVLDALLEMSNPLAMLGRADADMRGLATWVHSRVTLLKLAKNISGKAATVFKTGPGIEPASLWILVGFCDLWACTCVTTVPARRRAVLSLQSSPSNAGVCFSLSAVEACRIFQQPLKPLGASVTLQKVKLLVLRLLVIFAENPPLATDILCATLSCQQGRIRSLVLSALQGVILVHDHSQELEKTWAFPHQLSCEGLRRNLSSTLESFRSSLEKAREQGCECGRRPAPGPQLVQSLEKILVSGNPIVTFLSNFTVTEDVKVKDLMQNVTRVTEELRSSLGISAETIGSILEANLSHSKVLQSALTVALSGSCDQDSLRLLLELPEDGKSESATKELCGLPGATVYSLVVLMARNLDPRNFIYKTLLPSEARGLLSSLLHVISRLSRLLPKASYVLGHLPEFLQALKVTALLDVPDFEQVSDPDQARSSAFGTFQSLMKMVCKEQASFFSRSDTFMNLPRVDELLEDDKEKFNIPEDSTPFCLKLYQEILRSPNGALVWSFLKPVLHGKILYTPNTQDINKVIQKANYTFDFVDKLKTLSETLLNMSSDFQSSGTSQMLNQLQEALKNKFVRRFVESQLHVSIDKLTENLQKLGGKLGRMFSHTSAGRVRSLGRVLVNLSSCVVLNRFQALESVATLESKAQELMRKNSFLASVIFSNSFVGKNLSSQPPPLPPEVAYTIRTSVLYSMRTDVVRNPFWKFHPQSLPADGFKYNYIFVPLQDMIERAIVSVQTGQEALGPGTQAQAIPYPCHTSDLFLNNVGFFFPLIMMLTWMVSVASTVRKLVYEREIQLEEYMRVMGVSPAVHFLAWLLENVAVLTVSSAALAVILKTSGIFRYSNGCIIFLFLLDFGVSVVMLSYFLSAFFSRANTAALCTSLVYTVSFLPYIVLLVLHNQLSAVMQTFLCLLSTTAFGQGVFFVTFLEGQEAGMQWDNMYESPEQAGMTFGWVCWMILFDSGLYFVCGWYLSNLIPGAFGLRKPWYFPFTSSYWKDVCGLVVKRPCSPGPNLFFFGENVDDKGSSLQNGEGRLEGPPPGVALLSVTKEHEHRQAAVRDLTLTFHRDQITALLGTNGAGKSTVISLLTGLYPPTSGTIIVNGKNLQTELEAVRAELGVCPQRDVLFDTLTVLEHLLLFASLKAPQGPQEELRRQVDRTLRDVGLVQHRHKPTRALSGGMKRKLSVGIAFLGASRTVVLDEPTSGVDPCSRRGIWDILLKYREGRTVIFSTHHLDEAEALSDRVAVLQRGRLLCWGPPSSLTQAHSQGLRLTLTRQPPVLEVDNLKDTACATSLIQTYIPRASLRGCSGGELSYVIPQDADRACFRGLFQALDQNLQHLHLTGYGISDTTLEEVFLNLLQDSKKPSEAAPRMDLEPPEPSPGHYGARARTPLVQGGPLLLAQMAALLVKRLRHAGRAWKGTVANLLLPVLFVALAMGLFMVRPLAVDYPPLKLTPGHYDGAETYFFRDNSSCWRLDPSSHLEARKLCDCLTCPNGSTRAPYLTNGLGHRLLNLSGLRLEEYLLAPTEKPRLGGWSFGVRDPGQGQDAHSNISKPKPLAKVWYNQKGFHSLPSYLNHLNNLILWRFLPPGVDWRQYGITLYSHPYGGALLNEDKILESIRQCGVALCIVLGFSILSASVGSSVVRDRVTGVKRLQHISGLGYRTYWFTNFLFDMLLYLVSVCLCVAVIAAFQLTAFTFRQNLAATALLLALFGYASLPWMYLISRIFSSSDVAFISYISLNFIFGLCTMLMTVMPRLLAIVSKAQHLQNIYDALKWVFTVFPQFCLGQGLVQLCYNQIKYDLTHNFGVDSYVSPFEMNFLGWIFVQLAGQGTVLLLLRMLLHWDLWQRGHSAIQGTVTSSQDIDVEKEQMRVLKGRTSGDILVICNLSKSYTRFFKRTTAVQDISLGIRRGECFGLLGVNGAGKTTTFRMLNGDLRPTSGHAVIRTPMGEDVDLSLAGAAGVRIGYCPQQDALDELLTGWEHLHHYCSLRGIPKQCIPQVTADLVRRLHLEAHVDKPVAAYSGGTKRKLSTALALLGQPDLLFLDEPSSGMDPCSKRHLWDAVMKEVQEGCAVVLSSHSMDECEALCTRLAVVVDGSFRCLGSPQHIKNRFGDGYTVKIWLCKDANQHSAVSDCLKLYFPGIQFKGQHLNLLEYLVPKRWGCLADLFTVLETNKHSLRIEHYSVNQTTLEQVFINFATEQQSPPACPDLSADHHCPQHLPI", "length": 4656, "header": "tr|A0A287AZ59-1|A0A287AZ59_PIG Isoform 1 of ATP binding cassette subfamily A member 13 OS=Sus scrofa OX=9823 GN=ABCA13 PE=4 SV=2 CANONICAL=A0A287AZ59-1" }, "locus": { "chromosome": "9", "start_pos": 135450808, "end_pos": 135115078, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058276.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058276.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049176.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049176.2" } ] } }, { "isoform_ac": "A0A8W4FH81-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ59/entry#A0A8W4FH81-1", "sequence": { "sequence": "MGRAGRQFRALLWKNWLSRIRHPVLSLAEFFWPCILFMILTVLRFQEPPRERDNCYLQPRDLPSQGVFPFVRGLLCNTGSRCRNTSYERSMEHHFRSSRLRSAAAPHRKVDDLAFLKEMQDLAKEVYEVMDEARNLQKLWVERSQTPDSSFGSSFITMDLNKTEEVLAKLESLHRQPHVWEFLLLLPRLRSDNDQSEDGIRGAEHLLQAAVNSFSSLEDLDWLPRSHTFARVSKMVLNVAISMLTFLQERQVATTGYTLSLIELVWDPQKVRADLKSQFGFGDLHTDRILNYSAQLQEIPTDSSLERMVCSALSGSSEDEGDRGGHPGDCDPRWSAAKNYLVREVSQLHLYKQVFAQWRRGGLLQKALAGPSRGLEALRNQSAEGSPLWKVAEALHTAFLLLNDTLAASGPQGHHTSTRIVQEGLEGLEGLVCGHNSSREASALHKLLESVEDANRLLQEVVTGHTNTTVLEPEDSPGWQDLDTQLSAASLPCSRLLWLLGAEVSQGDCKDQLMSILFLEQTPSWKAFLGFVRKTCELARFVNKQESFQDGLLDKSESPCYEENMDWKIISDNYFAFLNNLLKTPKTSLSRLLNSTKELLMVEKKLQPLEDEQINLLLSFMEFLEKLLVPNPFDSSSVPKFHTLLSLPESILNISYLWIDHLTRLESDTAGVDTQKLLESGKEMIEKVQTLENLWRKKESRNSLRFLELLLYEMHPKLLELWIYDISARERAKLEVLSTLLNFSDPEDERILSKSFSFSQLFHSDGRQSPARKMDFVHLSEIVINSLHELGLLRQEQVSDAVGTVHALRNASKLFSALSEPQKKDIGKILTHVYLHVFQDKDSALFLQIYSSFYQYVYTFLSIQSRESLLPFLTQISEHILDITRQFNFQNISKAFAFFYETTEVLGGISQVPYCQQLLSIFNFLELQAQSLMSKEAPEMQGIHATLTGLKQLFATDADFRNSVFQYVSQLLHGSGEALLGNECFVLNNKSLPSVHYSVEKGSASRLPWAQMLSNLTAEGSAFPRFAAVHCTVSWLQMWTGICRSASQVFRLNLGVLTSLHVGLTQLLDELESAVPVPQTCRGRLPTHHPAGLILHLFRNVTQADGFHSWDDFLNLRGLWVALSDGLVRVKLLNLDHVEKSLLTMETALAQLKSFPLHTNGSREFLSSLLDVFIELSNTSAYIDRNVPLRNHFLSKDLTDYEVRFADVLANLRETISFLKNVSHDQDLLSCADIFQNVTEFILEGGLFYANTSQRAFHILAMLNSTFSSADTVSRLKGCSRWIDIITHLCRMLSNSSFSQGRLQGVVRRFRDAEDKMNSALKLVTWVLNVMMEPDCSLNTSNMNCVNSYLKNMTDFLNVILTAVLEKEEVPKFEILLTVLNDSTNQVRLIISNVTRDFDAAPQSNWKHFTELILKPTEMSAEMPLLFQNIWLHLVALGKKIQTLAKASSPPTLKNNTSSETEKILNAFATSPKEKEMHGLGDSFYQLASYLAFNLSHDPQSSPQITSPEIITKAVGLSIQLMRDAFNFLRPSVYHNIPQEPEKLQVLKTVTSLMHTLKNADIHLLAEQLGQVGEGLMNFFRNISRLGSGTLGVSFFVDLMEKFVDSSHSWNVNHLLRLSRLFPRGDVDTVVDLYYLLPHAVGLLQRVVDKNVTEALKDAYNFTLLHGISLSDVTKEDFAIVIKTLLDTTELISDNPEILPEALTCLPVFWCWNRTASGLQQHPKSEACNAHELTSLFYSKVAGILAHLHLSPLSEDSPCLNETSQREVSRKVACVVHELMDWMSILLELSEAFHVKTSLVETVQGFWYKALPFVLSSGNQSHGSISELCPGGPVKQVALQVIGKLKNVDLTKVTSDENLLNKLASLNKTLNVTEGAEAPVRNTSSLNLGRIIDLLSRDENLENRTNSVVSLFMTLLNANLTGRSLEALSSFIKETGATYNFEALWLELEQIMTDLTHDFRIRSLFSEINKEMQMINSVTLQNITLQLAPFLERLDSSSLKILEIIEDFLLAIKNRFHKYANKDDSKMIQTFLLTANQSLPDDTALWTKNIAAFLSHLENISREDNFDVALLTHLLNQEQPTNFSVVQLLLESFLINSINNLVESSQEAVLNVSDADLQIMNFINLPLNHTQSEDGERTPLPPRSLVDFMEQLWKTFFSFLVKAHSGNRVSLLIVPKEKLLELLKLDPFLTSTKTDRWVPLLSALKESVYHLTESSFTLDDGEFCSAENKMDSGLEFLRVVNQLPARMNSSEDLSKLNQDLRSALPHERDLYGHSTTSVPCILCSKKDRATLETTKGFLGVIPGGGGESPVLDALLEMSNPLAMLGRADADMRGLATWVHSRVTLLKLAKNISGKAATVFKTGPGIEPASLWILVGFCDLWACTCVTTVPARRRAVLSLQSSPSNAGVCFSLSAVEACRIFQQPLKPLGASVTLQKVKLLVLRLLVIFAENPPLATDILCATLSCQQGRIRSLVLSALQGVILVHDHSQELEKTWAFPHQLSCEGLRRNLSSTLESFRSSLEKAREQGCECGRRPAPGPQRTRRLVQSLEKILVSGNPIVTFLSNFTVTEDVKVKDLMQNVTRVTEELRSSLGISAETIGSILEANLSHSKVLQSALTVALSGSCDQDSLRLLLELPEDGKSESATKELCGLPGATVYSLVVLMARNLDPRNFIYKTLLPSEARGLLSSLLHVISRLSRLLPKASYVLGHLPEFLQALKVTALLDVPDFEQVSDPSGDQARSSAFGTFQSLMKMVCKEQASFFSRSDTFMNLPRVDELLEDDKEKFNIPEDSTPFCLKLYQEILRSPNGALVWSFLKPVLHGKILYTPNTQDINKVIQKANYTFDFVDKLKTLSETLLNMSSDFQSSGTSQMLNQLQEALKNKFVRRFVESQLHVSIDKLTENLQKLGKWLGRMFSHTSAGRVRSLGRVLVNLSSCVVLNRFQALESVATLESKAQELMRKNSFLASVIFSNSFVGKNLSSQPPPLPPEVAYTIRTSVLYSMRTDVVRNPFWKFHPQSLPADGFKYNYIFVPLQDMIERAIVSVQTGQEALGPGTQAQAIPYPCHTSDLFLNNVGFFFPLIMMLTWMVSVASTVRKLVYEREIQLEEYMRVMGVSPAVHFLAWLLENVAVLTVSSAALAVILKTSGIFRYSNGCIIFLFLLDFGVSVVMLSYFLSAFFSRANTAALCTSLVYTVSFLPYIVLLVLHNQLSAVMQTFLCLLSTTAFGQGVFFVTFLEGQEAGMQWDNMYESPEQAGMTFGWVCWMILFDSGLYFVCGWYLSNLIPGAFGLRKPWYFPFTSSYWKDVCGLVVKRPCSPGPNLFFFGENVDDKGSSLQNGEGRLEGPPPGVALLSVTKEHEHRQAAVRDLTLTFHRDQITALLGTNGAGKSTVISLLTGLYPPTSGTIIVNGKNLQTELEAVRAELGVCPQRDVLFDTLTVLEHLLLFASLKAPQGPQEELRRQVDRTLRDVGLVQHRHKPTRALSGGMKRKLSVGIAFLGASRTVVLDEPTSGVDPCSRRGIWDILLKYREGRTVIFSTHHLDEAEALSDRVAVLQRGRLLCWGPPSSLTQAHSQGLRLTLTRQPPVLEVDNLKDTACATSLIQTYIPRASLRGCSGGELSYVIPQDADRACFRGLFQALDQNLQHLHLTGYGISDTTLEEVFLNLLQDSKKPSEAAPRMDLEPPEPSPGHCKSVTPLVQGGPLLLAQMAALLVKRLRHAGRAWKGTVANLLLPVLFVALAMGLFMVRPLAVDYPPLKLTPGHYDGAETYFFRDNSSCWRLDPSSHLEARKLCDCLTCPNGSTRAPYLTNGLGHRLLNLSGLRLEEYLLAPTEKPRLGGWSFGVRDPGQGQDAHSNISKPKPLAKVWYNQKGFHSLPSYLNHLNNLILWRFLPPGVDWRQYGITLYSHPYGGALLNEDKILESIRQCGVALCIVLGFSILSASVGSSVVRDRVTGVKRLQHISGLGYRTYWFTNFLFDMLLYLVSVCLCVAVIAAFQLTAFTFRQNLAATALLLALFGYASLPWMYLISRIFSSSDVAFISYISLNFIFGLCTMLMTVMPRLLAIVSKAQHLQNIYDALKWVFTVFPQFCLGQGLVQLCYNQIKYDLTHNFGVDSYVSPFEMNFLGWIFVQLAGQGTVLLLLRMLLHWDLWQRGHSAIQGTVTSSQDIDVEKEQMRVLKGRTSGDILVICNLSKSYTRFFKRTTAVQDISLGIRRGECFGLLGVNGAGKTTTFRMLNGDLRPTSGHAVIRTPMGEDVDLSLAGAAGVRIGYCPQQDALDELLTGWEHLHHYCSLRGIPKQCIPQVTADLVRRLHLEAHVDKPVAAYSGGTKRKLSTALALLGQPDLLFLDEPSSGMDPCSKRHLWDAVMKEVQEGCAVVLSSHSMDECEALCTRLAVVVDGSFRCLGSPQHIKNRFGDGYTVKIWLCKDANQHSAVSDCLKLYFPGIQFKGQHLNLLEYLVPKRWGCLADLFTVLETNKHSLRIEHYSVNQTTLEQVFINFATEQQSPPACPDLSADHHCPQHLPI", "length": 4523, "header": "tr|A0A8W4FH81-1|A0A287AZ59_PIG Computationally mapped isoform of ATP binding cassette subfamily A member 13 OS=Sus scrofa OX=9823 GN=ABCA13 PE=4 SV=1 CANONICAL=A0A287AZ59-1" }, "locus": { "chromosome": "9", "start_pos": 135450808, "end_pos": 135115078, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098437.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098437.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078679.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078679.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FH81", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "lipid transporter activity", "id": "GO:0005319", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005319", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZ59", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ59" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZ59", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ59" } ], "pmid": "" }, { "name": "ATPase-coupled transmembrane transporter activity", "id": "GO:0042626", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042626", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZ59", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ59" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZ59", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ59" } ], "pmid": "" }, { "name": "ABC-type transporter activity", "id": "GO:0140359", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140359", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZ59", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ59" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZ59", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ59" } ], "pmid": "" }, { "name": "positive regulation of cholesterol transport", "id": "GO:0032376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032376", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZ59", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ59" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasmic vesicle membrane", "id": "GO:0030659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030659", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZ59", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ59" } ], "pmid": "" } ] } ] }, 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AZ95-1", "uniprot_ac": "A0A287AZ95", "uniprot_id": "A0A287AZ95_PIG", "mass": { "chemical_mass": 11360.0, "monoisotopic_mass": 11360.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Large ribosomal subunit protein uL15", "type": "recommended", "evidence": [ { "id": "A0A287AZ95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ95/entry#names_and_taxonomy" } ] }, { "name": "60S ribosomal protein L27a", "type": "synonym", "evidence": [ { "id": "A0A287AZ95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ95/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AZ95", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ95" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ95", "locus": {} } ], "crossref": [ { "id": "A0A287AZ95", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AZ95", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036974", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036974", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR021131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036227", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036227", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11721", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11721", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11721:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11721:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00828", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00828", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AZ95", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZ95-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSRRRKTWKLGGHMSHGHGCISKHQKFNLNKNHSGYLGKQTWVNAAKNKSGAAPITDGVPSGYYKVLGKGKLPKQGVVLKVKSFSRRAKDKIMGVSESCVLVA", "length": 104, "header": "tr|A0A287AZ95-1|A0A287AZ95_PIG Isoform 1 of Large ribosomal subunit protein uL15 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287AZ95-1" }, "isoforms": [ { "isoform_ac": "A0A287AZ95-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ95/entry#A0A287AZ95-1", "sequence": { "sequence": "MPSRRRKTWKLGGHMSHGHGCISKHQKFNLNKNHSGYLGKQTWVNAAKNKSGAAPITDGVPSGYYKVLGKGKLPKQGVVLKVKSFSRRAKDKIMGVSESCVLVA", "length": 104, "header": "tr|A0A287AZ95-1|A0A287AZ95_PIG Isoform 1 of Large ribosomal subunit protein uL15 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287AZ95-1" }, "locus": { "chromosome": "17", "start_pos": 63361989, "end_pos": 63361547, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037320.2", "url": "https://www.ensembl.org/id/ENSSSCT00000037320.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049461.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049461.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZ95", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ95" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287AZI4-1", "uniprot_ac": "A0A287AZI4", "uniprot_id": "A0A287AZI4_PIG", "mass": { "chemical_mass": 171685.0, "monoisotopic_mass": 171685.0 }, "refseq": {}, "gene_names": [ { "name": "FMN2", "type": "recommended", "evidence": [ { "id": "A0A287AZI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ] } ], "protein_names": [ { "name": "Formin-2", "type": "recommended", "evidence": [ { "id": "A0A287AZI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Actin-binding protein that is involved in actin cytoskeleton assembly and reorganization. Acts as an actin nucleation factor and promotes assembly of actin filaments together with SPIRE1 and SPIRE2. Involved in intracellular vesicle transport along actin fibers, providing a novel link between actin cytoskeleton dynamics and intracellular transport. Required for asymmetric spindle positioning, asymmetric oocyte division and polar body extrusion during female germ cell meiosis. Plays a role in responses to DNA damage, cellular stress and hypoxia by protecting CDKN1A against degradation, and thereby plays a role in stress-induced cell cycle arrest. Also acts in the nucleus: together with SPIRE1 and SPIRE2, promotes assembly of nuclear actin filaments in response to DNA damage in order to facilitate movement of chromatin and repair factors after DNA damage. Protects cells against apoptosis by protecting CDKN1A against degradation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4#function" }, { "database": "UniProtKB", "id": "ARBA00057189", "url": "https://www.uniprot.org/uniprotkb/ARBA00057189#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FMN2", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4", "locus": {} } ], "crossref": [ { "id": "A0A287AZI4", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AZI4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038556", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038556", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR015425", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015425", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051425", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051425", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45725", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45725", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45725:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45725:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNQDAKPKRSAGDALHGGGGGGGEDAAGPRDAEGTKKGGGGKKAPGRHGKGGGGGEPGRKKSKSDPRASVFSNLRIRKTLTKGRGAGGSREDVLEPQALQAGELDSAHSLVTKTPDLSLSADDTGLSDTECADPFEVTRPRGPGSAEAGGPAVAENSETAAGAQDGQRTSSGSDTDLYSFHSATEQEDLLSDIQQAIRLQQLQQQPQSPESPAASPPSAPYQFGALLGLERPLPGPSAEQTPSARPDQPPAPDLLSASAALPSPESAPGEPSAGVPLRGAGDTDEEGEEDAFEDAPRGSPGAECDLAEREALQRPGVPREEGAPRPGAPTAASLPGSPARSPRCLRSRPLLAPCYVRTTTRQLSSPGPSPSASPSHSPRVQRRPESSLGRDSGAVTAPAAARARKPRAGRSRSADWTAELGRAPGVGGSAHLPQRGAGGLQDVFAGRTLLEKLFSQQENGPPEEAEKFCSRIIAMGLLLPFSDCFREPCSQNAQSSSAPFDQDQLYTWAAVSQPTHSLDYVEGQFPRRVPSAWPPPKPPDEEHRPKDADTESQSAVLETPKKCSDAVQQEVCDMKSEGPATVIQQLEQTIEDLRTKIAELEKQYPPADMEGTVGPHGVPNGMAPPEDICLEALRLGEKDVQHQRILQAKSIQTSPVEEGGTLTLTSVSALPECLPHTPWAESGNSAVPSSPSRPQTKFCSEISLVVSPRRISVQLDAPQSLQPSPPPSLPWSVGQGQAGSRPSLHTEFETSHEHSVFPSSENSQNLPLTPPLPCIESSSAMPGLGMATPPSLSPPGTLGPALPSTAVPSPPPLPGPEMLPHSPQALPGVGIPPAPLPGMGIPTPPPLPGVGIPPAPPLPGMGIPPPPPLPGVGIPPAPPLPGMGIPLPRLCQEWEYLLPPSSWNGNPHSPAFARSGNTSCPPSSWNGNPPSPTFARSGNTSCPPSSWNGNPPSPAFARSGNTSCPPSSWNGNPPSPTFARSGNTSCPPLPGMGIPAPPPLPGVGIPPAPPLPGMGIPPPPPLPGMGIPPAPPLPGMGIPPPPPLPGMGIPPAPPLPGEGIPPAPPLPGVGIPPAPPLPGVGIPPPPPLPGEGLPPAPPLPGVGVPPPPPLPGMGIPAPPPPPPPGTGILLPPPPPLLPGSGLPLPPQVGSSTLPTPQVCGFLPPPLPTGLFGLGMNQDKGSRKQPIEPCRPMKPLYWTRIQLHSKRDSSASLIWEKIEEPSIDCHEFEELFSKTTVKERKKPISDTITKTKAKQVVKLLSNKRSQAVGILMSSLHLDMKDIQHAVVNLDNSVVDLETLQALYENRAQSDELEKIEKHGRSSKDKENAKSLDKPEQFLYELSLIPNFSERVFCILFQSTFSESICSIRRKLELLQKLCETLKNGSGVMQVLGLVLAFGNYMNGGNKTRGQADGFGLDILPKLKDVKSSDNSRSLLSYIVSYYLRNFDEDAGKEQCVFPLPEPQDLFQASQMKFEDFQKDLRKLKKDLRACEVEAGKVYQVSSQEHIQPFKENMEQFIIQAKIDQEAEENSLTETHKCFLETTAYFFMRPKIGEKEVSPNVFFSIWHEFSSDFKDFWKKENKLILQERVKEAEEVCRQKKGKSLYKIKPRHDSGIKAKISMKT", "length": 1622, "header": "tr|A0A287AZI4-1|A0A287AZI4_PIG Isoform 1 of Formin-2 OS=Sus scrofa OX=9823 GN=FMN2 PE=3 SV=4 CANONICAL=A0A287AZI4-1" }, "isoforms": [ { "isoform_ac": "A0A287AZI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4/entry#A0A287AZI4-1", "sequence": { "sequence": "MGNQDAKPKRSAGDALHGGGGGGGEDAAGPRDAEGTKKGGGGKKAPGRHGKGGGGGEPGRKKSKSDPRASVFSNLRIRKTLTKGRGAGGSREDVLEPQALQAGELDSAHSLVTKTPDLSLSADDTGLSDTECADPFEVTRPRGPGSAEAGGPAVAENSETAAGAQDGQRTSSGSDTDLYSFHSATEQEDLLSDIQQAIRLQQLQQQPQSPESPAASPPSAPYQFGALLGLERPLPGPSAEQTPSARPDQPPAPDLLSASAALPSPESAPGEPSAGVPLRGAGDTDEEGEEDAFEDAPRGSPGAECDLAEREALQRPGVPREEGAPRPGAPTAASLPGSPARSPRCLRSRPLLAPCYVRTTTRQLSSPGPSPSASPSHSPRVQRRPESSLGRDSGAVTAPAAARARKPRAGRSRSADWTAELGRAPGVGGSAHLPQRGAGGLQDVFAGRTLLEKLFSQQENGPPEEAEKFCSRIIAMGLLLPFSDCFREPCSQNAQSSSAPFDQDQLYTWAAVSQPTHSLDYVEGQFPRRVPSAWPPPKPPDEEHRPKDADTESQSAVLETPKKCSDAVQQEVCDMKSEGPATVIQQLEQTIEDLRTKIAELEKQYPPADMEGTVGPHGVPNGMAPPEDICLEALRLGEKDVQHQRILQAKSIQTSPVEEGGTLTLTSVSALPECLPHTPWAESGNSAVPSSPSRPQTKFCSEISLVVSPRRISVQLDAPQSLQPSPPPSLPWSVGQGQAGSRPSLHTEFETSHEHSVFPSSENSQNLPLTPPLPCIESSSAMPGLGMATPPSLSPPGTLGPALPSTAVPSPPPLPGPEMLPHSPQALPGVGIPPAPLPGMGIPTPPPLPGVGIPPAPPLPGMGIPPPPPLPGVGIPPAPPLPGMGIPLPRLCQEWEYLLPPSSWNGNPHSPAFARSGNTSCPPSSWNGNPPSPTFARSGNTSCPPSSWNGNPPSPAFARSGNTSCPPSSWNGNPPSPTFARSGNTSCPPLPGMGIPAPPPLPGVGIPPAPPLPGMGIPPPPPLPGMGIPPAPPLPGMGIPPPPPLPGMGIPPAPPLPGEGIPPAPPLPGVGIPPAPPLPGVGIPPPPPLPGEGLPPAPPLPGVGVPPPPPLPGMGIPAPPPPPPPGTGILLPPPPPLLPGSGLPLPPQVGSSTLPTPQVCGFLPPPLPTGLFGLGMNQDKGSRKQPIEPCRPMKPLYWTRIQLHSKRDSSASLIWEKIEEPSIDCHEFEELFSKTTVKERKKPISDTITKTKAKQVVKLLSNKRSQAVGILMSSLHLDMKDIQHAVVNLDNSVVDLETLQALYENRAQSDELEKIEKHGRSSKDKENAKSLDKPEQFLYELSLIPNFSERVFCILFQSTFSESICSIRRKLELLQKLCETLKNGSGVMQVLGLVLAFGNYMNGGNKTRGQADGFGLDILPKLKDVKSSDNSRSLLSYIVSYYLRNFDEDAGKEQCVFPLPEPQDLFQASQMKFEDFQKDLRKLKKDLRACEVEAGKVYQVSSQEHIQPFKENMEQFIIQAKIDQEAEENSLTETHKCFLETTAYFFMRPKIGEKEVSPNVFFSIWHEFSSDFKDFWKKENKLILQERVKEAEEVCRQKKGKSLYKIKPRHDSGIKAKISMKT", "length": 1622, "header": "tr|A0A287AZI4-1|A0A287AZI4_PIG Isoform 1 of Formin-2 OS=Sus scrofa OX=9823 GN=FMN2 PE=3 SV=4 CANONICAL=A0A287AZI4-1" }, "locus": { "chromosome": "AEMK02000324.1", "start_pos": 354617, "end_pos": 47604, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054926.4", "url": "https://www.ensembl.org/id/ENSSSCT00000054926.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049308.4", "url": "https://www.ensembl.org/id/ENSSSCP00000049308.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 331, "start_aa": "Thr", "end_pos": 331, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr331", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" }, { "name": "cytoplasmic vesicle membrane", "id": "GO:0030659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030659", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" }, { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" }, { "name": "negative regulation of apoptotic process", "id": "GO:0043066", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043066", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" }, { "name": "cellular response to hypoxia", "id": "GO:0071456", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071456", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" }, { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" }, { "name": "negative regulation of protein catabolic process", "id": "GO:0042177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042177", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } ], "pmid": "" }, { "name": "formin-nucleated actin cable assembly", "id": "GO:0070649", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070649", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZI4", "url": "https://www.uniprot.org/uniprotkb/A0A287AZI4" } 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"MAIDRRREAAGGGPGRLPPAAEENGALPPGDAAASAPLGGRAGPSGGGDIQPLPAPHAAGGPHPSLLLLDYDGSVLPFLGGLGGGYQKTLVLLTWIPALFIGFSQFSDSFLLDQPNFWCRGAGRDAEQAGVTGAGRWGGGDLANWTSPPTTPASTAAWGTAGPLGNGSGADGGDAPPLPSPPDKGDNASNCDCHAWDYGIRTGLVQNVVSKWDLVCDNAWKVHVAKFSLLVGLIFGYLITGCVADWFGRRPVLLVCIVSILIFGLAVALSVNVTMFSTLRFFEGFCLAGVILTLYALRIELCPPGKRFTITMVASFVAMAGQFLMPGLAALCRDWQVLQALIICPFLLMLLYWSIFPESLRWLMATHQFESAKKLILYFTQKNRMSPESDIKGVMPELEKELSRRPKKVCIVKVVGTRNLWKNIVVLCVNSLTGFGIHHCFARSMMGHEVKVPLLENFYADYYTAAGIALASCLAMCLVVGVLGRRGGLLLFMILTALASLLQLGLLNLIGKYSQHPDSELQLKLAVGMSDSVKDKFSVTFSIVGMFASHAAGSLSVFFCAEITPTVIRCGGLGLVLASAGFGMLTAPIIELHNQKGYFLHHIIFACCTLICIICLLLLPESRDQNLPESIADGEHYTRQPLLPPRRGEQPLLLTNAELKDYSGLHDAAAAGDGLPDGATANGGRPM", "length": 687, "header": "tr|A0A287AZT7-1|A0A287AZT7_PIG Isoform 1 of Solute carrier family 22 member 23 OS=Sus scrofa OX=9823 GN=SLC22A23 PE=4 SV=2 CANONICAL=A0A287AZT7-1" }, "isoforms": [ { "isoform_ac": "A0A287AZT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZT7/entry#A0A287AZT7-1", "sequence": { "sequence": "MAIDRRREAAGGGPGRLPPAAEENGALPPGDAAASAPLGGRAGPSGGGDIQPLPAPHAAGGPHPSLLLLDYDGSVLPFLGGLGGGYQKTLVLLTWIPALFIGFSQFSDSFLLDQPNFWCRGAGRDAEQAGVTGAGRWGGGDLANWTSPPTTPASTAAWGTAGPLGNGSGADGGDAPPLPSPPDKGDNASNCDCHAWDYGIRTGLVQNVVSKWDLVCDNAWKVHVAKFSLLVGLIFGYLITGCVADWFGRRPVLLVCIVSILIFGLAVALSVNVTMFSTLRFFEGFCLAGVILTLYALRIELCPPGKRFTITMVASFVAMAGQFLMPGLAALCRDWQVLQALIICPFLLMLLYWSIFPESLRWLMATHQFESAKKLILYFTQKNRMSPESDIKGVMPELEKELSRRPKKVCIVKVVGTRNLWKNIVVLCVNSLTGFGIHHCFARSMMGHEVKVPLLENFYADYYTAAGIALASCLAMCLVVGVLGRRGGLLLFMILTALASLLQLGLLNLIGKYSQHPDSELQLKLAVGMSDSVKDKFSVTFSIVGMFASHAAGSLSVFFCAEITPTVIRCGGLGLVLASAGFGMLTAPIIELHNQKGYFLHHIIFACCTLICIICLLLLPESRDQNLPESIADGEHYTRQPLLPPRRGEQPLLLTNAELKDYSGLHDAAAAGDGLPDGATANGGRPM", "length": 687, "header": "tr|A0A287AZT7-1|A0A287AZT7_PIG Isoform 1 of Solute carrier family 22 member 23 OS=Sus scrofa OX=9823 GN=SLC22A23 PE=4 SV=2 CANONICAL=A0A287AZT7-1" }, "locus": { "chromosome": "7", "start_pos": 2131709, "end_pos": 1991931, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060595.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060595.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056537.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056537.3" } ] } }, { "isoform_ac": "F1RWZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZT7/entry#F1RWZ0-1", "sequence": { "sequence": "MAIDRRREAAGGGPGRLPPAAEENGALPPGDAAASAPLGGRAGPSGGGDIQPLPAPHAAGGPHPSLLLLDYDGSVLPFLGGLGGGYQKTLVLLTWIPALFIGFSQFSDSFLLDQPNFWCRGAGRDAEQAGVTGAGRWGGGDLANWTSPPTTPASTAAWGTAGPLGNGSGADGGDAPPLPSPPDKGDNASNCDCHAWDYGIRTGLVQNVVSKWDLVCDNAWKVHVAKFSLLVGLIFGYLITGCVADWFGRRPVLLVCIVSILIFGLAVALSVNVTMFSTLRFFEGFCLAGVILTLYALRIELCPPGKRFTITMVASFVAMAGQFLMPGLAALCRDWQVLQALIICPFLLMLLYWSIFPESLRWLMATHQFESAKKLILYFTQKNRMSPESDIKGVMPELEKELSRRPKKVCIVKVVGTRNLWKNIVVLCVNSLTGFGIHHCFARSMMGHEVKVPLLENFYADYYTAAGIALASCLAMCLVVGVLGRRGGLLLFMILTALASLLQLGLLNLIGKYSQHPDSGMSDSVKDKFSVTFSIVGMFASHAAGSLSVFFCAEITPTVIRCGGLGLVLASAGFGMLTAPIIELHNQKGYFLHHIIFACCTLICIICLLLLPESRDQNLPESIADGEHYTRQPLLPPRRGEQPLLLTNAELKDYSGLHDAAAAGDGLPDGATANGGRPM", "length": 679, "header": "tr|F1RWZ0-1|A0A287AZT7_PIG Computationally mapped isoform of Solute carrier family 22 member 23 OS=Sus scrofa OX=9823 GN=SLC22A23 PE=4 SV=4 CANONICAL=A0A287AZT7-1" }, "locus": { "chromosome": "7", "start_pos": 2131709, "end_pos": 1991931, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001096.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001096.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001074.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001074.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 151, "start_aa": "Thr", "end_pos": 151, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr151", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RWZ0", "url": "https://www.uniprot.org/uniprotkb/F1RWZ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152838", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152838", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZT7", "url": "https://www.uniprot.org/uniprotkb/A0A287AZT7" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZT7", "url": "https://www.uniprot.org/uniprotkb/A0A287AZT7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZT7", "url": "https://www.uniprot.org/uniprotkb/A0A287AZT7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 187, "end_pos": 189, "annotation": "n_glycosylation_sequon" }, { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AZT7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 687, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AZT7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AZT7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287AZT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AZT7" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 160, "end_pos": 623, "start_aa": "Thr", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 151 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 144, "end_pos": 146 }, { "start_pos": 166, "end_pos": 168 }, { "start_pos": 187, "end_pos": 189 }, { "start_pos": 272, "end_pos": 274 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, 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"url": "https://www.ensembl.org/id/ENSSSCG00000033074" } ] } } ], "crossref": [ { "id": "A0A287AZU7", "url": "https://alphafold.ebi.ac.uk/entry/A0A287AZU7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033074", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033074", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100621092", "url": "https://www.ncbi.nlm.nih.gov/gene/100621092", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025829", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025829", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033446", "url": 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"https://www.ebi.ac.uk/interpro/entry/IPR006515", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CTIFVFY", "url": "https://omabrowser.org/oma/group/CTIFVFY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AZY8", "url": "https://www.orthodb.org/?gene=A0A287AZY8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AZY8", "url": "https://www.uniprot.org/uniprotkb/A0A287AZY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSGEPNPAGKKKKYLKAALYVGDLAPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGEDMDDDKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEQFSSFGSITRAKVMVEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQARRRW", "length": 382, "header": "tr|A0A287AZY8-1|A0A287AZY8_PIG Isoform 1 of Polyadenylate-binding protein 5 OS=Sus scrofa OX=9823 GN=PABPC5 PE=4 SV=1 CANONICAL=A0A287AZY8-1" }, "isoforms": [ { "isoform_ac": "A0A287AZY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZY8/entry#A0A287AZY8-1", "sequence": { "sequence": "MGSGEPNPAGKKKKYLKAALYVGDLAPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGEDMDDDKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEQFSSFGSITRAKVMVEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQARRRW", "length": 382, "header": "tr|A0A287AZY8-1|A0A287AZY8_PIG Isoform 1 of Polyadenylate-binding protein 5 OS=Sus scrofa OX=9823 GN=PABPC5 PE=4 SV=1 CANONICAL=A0A287AZY8-1" }, "locus": { "chromosome": "X", "start_pos": 74143770, "end_pos": 74142625, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056151.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056151.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049719.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049719.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZY8", "url": "https://www.uniprot.org/uniprotkb/A0A287AZY8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D4A5H0-1", "protein_name": "Polyadenylate-binding protein 5", "gene_name": "Pabpc5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGSGEPNTAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQAR", "length": 379 }, "evidence": [ { "id": "A0A287AZY8", "url": "https://omabrowser.org/oma/group/A0A287AZY8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { 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"ENSSSCT00000044139.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044139.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049434.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049434.1" } ] } }, { "isoform_ac": "A0A4X1WCI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B001/entry#A0A4X1WCI3-1", "sequence": { "sequence": "MSTETELQVAVKTSAKKDSRKKGQDRSEATLIKRFKGEGVRYKAKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGALQHHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQLIYELKQREELEKKAQKDKQCEQAVYQTILEEDVEDPVYQVISETGRGVRVRNGQ", "length": 214, "header": "tr|A0A4X1WCI3-1|A0A287B001_PIG Computationally mapped isoform of DAB adaptor protein 1 OS=Sus scrofa OX=9823 GN=DAB1 PE=4 SV=1 CANONICAL=A0A287B001-1" }, "locus": { "chromosome": "6", "start_pos": 155297358, "end_pos": 155084575, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061588.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061588.3" }, { "database": "Ensembl 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"start_pos": 155356655, "end_pos": 155084575, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082332.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082332.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071895.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071895.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 261, "start_aa": "Thr", "end_pos": 261, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr261", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 264, "start_aa": "Thr", "end_pos": 264, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr264", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 354, "start_aa": "Thr", "end_pos": 354, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr354", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 482, "start_aa": "Thr", "end_pos": 482, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr482", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCI3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCI3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8866376", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866376", "resource": "Reactome", "description": "Reelin signalling pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287B001", "url": "https://www.uniprot.org/uniprotkb/A0A287B001" } ], "pmid": "" } ] }, { "name": 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"MTSAAEIKKPPVAPKPKFVVAANKPAPPPVAPKPDSVVSSVPQPTKKTKPAIAPKPKVLKASPVQDVRQSPSRKLLVNLEEQQQESSESTDSSGCENPGHRSSDYILPMCSCRPECNHKLGTRETLCVKQLVLGPLEMHEHLEHHQVDESCSAGKSQGKCDARGEKVKSQSEVILKASILEEKLKDVLTQRASPFIFPQKQRSTDSPEMNDGWNSTRQFRIDFADLSPSLSRFGKVPDHHRCHLQLPSDACQHVERSQNDSEQSNGCFHASEQEALEDGKRSTVLSSGGERKNSEIRDLGPLEIHLVPCTPKFPTPKPRKARAARLLRQKCVDAPSEPTEEPATVDSSSCLFEDSLKNNTISVSHQSVLWNQERVDQAKPGEQRELNVDFDGDRQTFANSQKALCPETSSFEKTAPPLGTDSNLSSDNRTGDGSGVSLAVDQGTSFIRCSTLSMSLPKQLKLACSEHLPAACNPGVSGPRLQKESVVKDESSSRIVPKKPQRHSLPAAGVLKKAASEELAEKSSYPSDEDKNSKKGLERNHLCAPSHGISSASEMAKQASEKPVWKLPHPIIPFSGSPQSLKSATASSDSEPATALAKPRAKSLSAVDMERCTKPCKDAQKKNSLKKLLALKLSICFMKSDFQKFWSKSSQPGDIASGRLVGRERKGSESDGPSSLVGEEKRNKPTKAHSADNHGLESPKKRKTPRGQASGANGPRAESLDDQMLSREPASQAPCKSVTGGCAPEYENIRHYEEIPEYENLPFIMAAGKTSDVHWQNSSSVEDADANVYEVEEPYEASGGQLLLGRRHQHSSSGASQEGHDDLDLGLGDLPSEEEEVINSSDEDDVSSASSKGEPDLLGDKQDEDTGLKSKVHHIAKEIMSSEKVFVDVLKLLHIDFRDAVAHASRQLGKPVIEDRILNQILYYLPQLYELNRDLLKELEERMMNWTEQQRIADIFVKKGPYLKMYSTYIKEFDKNIALLDEQCKKNPGFAAVVKEFEMSPRCANLALKHYLLKPVQRIPQYRLLLTGGPLPQVTNALAVVIEVANHANDTMKQGDNFQKLMQIQYSLNGHHEIVQPGRVFLKEGTLMKLSRKVMQPRMFFLFNDALLYTTPVQSGMYKLNNMLSLAGMKVRKPTQEAYQNELKIESVERSFILSASSAPERDEWLEAISRSIEEYAKKRITFCPSRSLDEADSENKDEVSPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKYGLDYLKNQPARVCEHCYQELQKLDHQHAPKIGSPGNHKSPSSTLSSVLHSIPSGRKQKKIPAALKEVSANTEDSSMSGYLYRSKGNKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTQVKDENSESRVFQLLHKNMLFYVFKADDAHSAHKQEDVEIFQEAEGEKK", 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"length": 1425, "header": "tr|A0A287B058-1|A0A287B058_PIG Isoform 1 of FYVE, RhoGEF and PH domain containing 6 OS=Sus scrofa OX=9823 GN=FGD6 PE=4 SV=2 CANONICAL=A0A287B058-1" }, "locus": { "chromosome": "5", "start_pos": 88221825, "end_pos": 88105258, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062706.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062706.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049489.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049489.2" } ] } }, { "isoform_ac": "F1SQP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B058/entry#F1SQP8-1", "sequence": { "sequence": "PKVLKASPVQDVRQSPSRKLLVNLEEQQQESSESTDSSGCENPGHRSSDYILPMCSCRPECNHKLGTRETLCVKQLVLGPLEMHEHLEHHQVDESCSAGKSQGKCDARGEKVKSQSEVILKASILEEKLKDVLTQRASPFIFPQKQRSTDSPEMNDGWNSTRQFRIDFADLSPSLSRFGKVPDHHRCHLQLPSDACQHVERSQNDSEQSNGCFHASEQEALEDGKRSTVLSSGGERKNSEIRDLGPLEIHLVPCTPKFPTPKPRKARAARLLRQKCVDAPSEPTEEPATVDSSSCLFEDSLKNNTISVSHQSVLWNQERVDQAKPGEQRELNVDFDGDRQTFANSQKALCPETSSFEKTAPPLGTDSNLSSDNRTGDGSGVSLAVDQGTSFIRCSTLSMSLPKQLKLACSEHLPAACNPGVSGPRLQKESVVKDESSSRIVPKKPQRHSLPAAGVLKKAASEELAEKSSYPSDEDKNSKKGLERNHLCAPSHGISSASEMAKQASEKPVWKLPHPIIPFSGSPQSLKSATASSDSEPATALAKPRAKSLSAVDMERCTKPCKDAQKKNSLKKLLALKLSICFMKSDFQKFWSKSSQPGDIASGRLVGRERKGSESDGPSSLVGEEKRNKPTKAHSADNHGLESPKKRKTPRGQASGANGPRAESLDDQMLSREPASQAPCKSVTGGCAPEYENIRHYEEIPEYENLPFIMAAGKTSDVHWQNSSSVEDADANVYEVEEPYEASGGQLLLGRRHHPCSCGDCGGHDDLDLGLGDLPSEEEEVINSSDEDDVSSASSKGEPDLLGDKQDEDTGLKSKVHHIAKEIMSSEKVFVDVLKLLHIDFRDAVAHASRQLGKPVIEDRILNQILYYLPQLYELNRDLLKELEERMMNWTEQQRIADIFVKKGPYLKMYSTYIKEFDKNIALLDEQCKKNPGFAAVVKEFEMSPRCANLALKHYLLKPVQRIPQYRLLLTGGPLPQVTNALAVVIEVANHANDTMKQGDNFQKLMQIQYSLNGHHEIVQPGRVFLKEGTLMKLSRKVMQPRMFFLFNDALLYTTPVQSGMYKLNNMLSLAGMKVRKPTQEAYQNELKIESVERSFILSASSAPERDEWLEAISRSIEEYAKKRITFCPSRSLDEADSENKDEVSPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKYGLDYLKNQPARVCEHCYQELQKLDHQHAPKIGSPGNHKSPSSTLSSVLHSIPSGRKQKKIPAALKEVSANTEDSSMSGYLYRSKGNKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTQVKDENSESRVFQLLHKNMLFYVFKADDAHSAEGEKK", "length": 1357, "header": "tr|F1SQP8-1|A0A287B058_PIG Computationally mapped isoform of FYVE, RhoGEF and PH domain containing 6 OS=Sus scrofa OX=9823 GN=FGD6 PE=4 SV=4 CANONICAL=A0A287B058-1" }, "locus": { "chromosome": "5", "start_pos": 88221825, "end_pos": 88111252, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000985.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000985.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000964.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000964.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQP8", "url": "https://www.uniprot.org/uniprotkb/F1SQP8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287B058", "url": "https://www.uniprot.org/uniprotkb/A0A287B058" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A287B058", "url": "https://www.uniprot.org/uniprotkb/A0A287B058" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287B058", "url": "https://www.uniprot.org/uniprotkb/A0A287B058" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A287B058", "url": "https://www.uniprot.org/uniprotkb/A0A287B058" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1049, "end_pos": 1051, "annotation": "n_glycosylation_sequon" }, { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 358, "end_pos": 360, "annotation": "n_glycosylation_sequon" }, { "start_pos": 423, "end_pos": 425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 428, "end_pos": 430, "annotation": "n_glycosylation_sequon" }, { "start_pos": 777, "end_pos": 779, "annotation": "n_glycosylation_sequon" }, { "start_pos": 839, "end_pos": 841, "annotation": "n_glycosylation_sequon" }, { "start_pos": 945, "end_pos": 947, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287B058", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B058" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 871, "end_pos": 1026, "start_aa": "Lys", 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Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0F2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110261515", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261515", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3I2N6-1", "protein_name": "SAYSvFN domain-containing protein 1", "gene_name": "Saysd1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEQRLAEFREARKRAGLVAQPSTASQGEQPSAEKAVAAAATPKTAPSWLRRFLTWKASPAITRARPNQAQEAAQQPPQSAAVPLISSQRQSLLTNITFLKVLLWLVLLGLFVELEFGLAYFVLSMFYWMYVGTRNPEEKKEGEKSAYSVFNPGCEAIQGTLTAEQLERELQLRPPLGR", "length": 178 }, "evidence": [ { "id": "A0A287B0F2", "url": "https://omabrowser.org/oma/group/A0A287B0F2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q32L85-1", "protein_name": "SAYSvFN domain-containing protein 1", "gene_name": "SAYSD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEQRLAEFRAARKRAGLVAEPSASSQSTQTSGEKAEAATTPKAPSGWLKRFLVWKPRPPSAQAQPSLAQGAAWPRGLESQPPWSPAEEAPPPPQPPPPQPLTPRDRSLLTSVTLLKVLLWLVLLGLFVELEFGLAYFVLSLFYWMYVGMRGPEEKMQGEKSAYSVFNPGCEAIQGSLTAEQLERELHLRPLPRR", "length": 194 }, "evidence": [ { "id": "A0A287B0F2", "url": "https://omabrowser.org/oma/group/A0A287B0F2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8K190-1", "protein_name": "SAYSvFN domain-containing protein 1", "gene_name": "Saysd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEQRLAEFREARKRASLVAQPSTSSQSVQTSGAKAEPAAATPKTATGWLTRFLKRKANPAIAQAQPNQPQEAGQQLPESTAVPLPSSCRQSFLTNITFLKVLLWLVLLGLFVELEFGLAYFVLSMFYWMYVGTRGPEEKKEGEKSAYSVFNPGCEAIQGTLTAEQLEQELQLRPPQGSRTSPSCSSYP", "length": 188 }, "evidence": [ { "id": "A0A287B0F2", "url": "https://omabrowser.org/oma/group/A0A287B0F2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NPB0-1", "protein_name": "SAYSvFN domain-containing protein 1", "gene_name": "SAYSD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEQRLAEFRAARKRAGLAAQPPAASQGAQTPGEKAEAAATLKAAPGWLKRFLVWKPRPASARAQPGLVQEAAQPQGSTSETPWNTAIPLPSCWDQSFLTNITFLKVLLWLVLLGLFVELEFGLAYFVLSLFYWMYVGTRGPEEKKEGEKSAYSVFNPGCEAIQGTLTAEQLERELQLRPLAGR", "length": 183 }, "evidence": [ { "id": "A0A287B0F2", "url": "https://omabrowser.org/oma/group/A0A287B0F2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "rescue of stalled ribosome", "id": "GO:0072344", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072344", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0F2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F2" } ], "pmid": "" }, { "name": "protein quality control for misfolded or incompletely synthesized proteins", "id": "GO:0006515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006515", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0F2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0F2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "UFM1-modified protein reader activity", "id": "GO:0141185", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141185", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0F2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287B0F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F2" }, { "id": "PF10260", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10260" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAYSvFN", "eco_id": "ECO_0000259", "start_pos": 117, "end_pos": 185, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287B0F4-1", "uniprot_ac": "A0A287B0F4", "uniprot_id": "A0A287B0F4_PIG", "mass": { "chemical_mass": 165057.0, "monoisotopic_mass": 165057.0 }, "refseq": {}, "gene_names": [ { "name": "LOC106507512", "type": "recommended", "evidence": [ { "id": "A0A287B0F4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F4" } ] } ], "protein_names": [ { "name": "KASH5-like coiled-coil domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287B0F4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287B0F4", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC106507512", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F4", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000000563", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000563", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15352", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15352", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15352:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15352:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05781", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05781", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14662", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14662", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B0F4", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASAKKTTEKRHDPVESIRRKIQAIRKREEISNPMRQIVKYQSSSFDSPQTNPKKDFEEVLRKMTAAHVPRPSLLFSNTEKEGAFNSSPQVVSPRTPSTSYLSSPDNATYSVILTSSENTSRPESKSSQNYTSLISQIRKQELSSHKDLNSYCSKNNFSTSTRDFDSTSDQSSEFFSPQDSVVKKLSLNEEGLKLGINDGEEDVTYSINRTWDEELLTSIFNACDTKCKELTWLSSSQGLVGVIKVIDYLRQTTSQGSEDGGLEELWNMLDSGKGDLPVNLETFQVAMKEWRARCRNKWEGMNSGSSSRMDDSAFEQDSIKSGGAIKMTTNITDSASPSFEVLGGDLSKGVLEVPDLITYAADLHFNKQKLEEENNNLKLALETLEEANTQLSEDCTELRLQIKSAHQAIMRTNLLKEELEELKISVNASEEQKTKIVAQNKQLETENRALILKIRILQEENAKNMMDIYKLEKKIEELFKTEREHQMKLHTFEDTLLNKDASLQKKDFSIEELKSTIREYGSIIENLRGEKAKLACELQHLQQELILNGIQLNVSGEHKCVNSEGEKSLLCELVLAQSAKNNETEWQCGLNSLSSLDTMMDQEMLLLLRELEQKGVEFTARLQRLHEDVSEVETLIDSSLQWVTHPEITVKEKWEDKLTEFKYIMEKKLNLCILLLNSLRNHKESLDEEFVKLIEILKRFRLEYFYFRKEFLSRQKQPEAITQLQEDAVNQEAILRKKVQEASQWLEEAERQVEDRNQAAHSAREEAKPWLHKLKEAISAQRNLQTINTELVNTCQTLEQKTRKPKTTVESLRTKLIQGQLHGLLFQSSLDEEFPPYYPFCCTDRIPHLLQEQLQCGPKRYSGQEARIHQRPLTFKHTCWYTPLLDALHLDSFTAVPRLELTPFSCVANQIHASCERPKDGEIEDGNLDVTRTHKCPGPTAGPPPGTDFPGCIRMSNDPSMEEDGVERLYSESLPQPRDCSTLPSPAHTSSTESTVTSSDSGSEMLSMASGDLDCKPLCEKEEERSASAVIKTEGESPAPKNTALQVSVSEEKTMSNQEATGEPETIDKHRKECIAGDAAISSLPATTVKSVNFRQSDNTSANEKEVEAEFLRLSLGFKCDLFTLEKRVKLEERSRDLAEENLKKEITNCLKLLESLTPLCEDDSQAQEIIKKLEKSITFLSQCTARVASRAEMLGAINQESRVSKAVEVMIQHVENLKRMYTKEHAELEELKQVLLQNERSYNPLEDEDDCQIKKRSASLNSKPSSLRRVTIASLPRNIGNAGMVAGMENNDRFGRRSSSWRILGSKQSEHRPSLHRFISTYSWADAEEEKCELKTKDDLGPPEEEIVERTRKPSLSEKKNNPSKWDVSSMYHTIASWATNLTTFIREANKALWLSVAFIVLFAALMSFFTGRFFQKSVDAAPTQDGDSWMTLERILWPFARLRHNGPPPV", "length": 1453, "header": "tr|A0A287B0F4-1|A0A287B0F4_PIG Isoform 1 of KASH5-like coiled-coil domain-containing protein OS=Sus scrofa OX=9823 GN=LOC106507512 PE=4 SV=1 CANONICAL=A0A287B0F4-1" }, "isoforms": [ { "isoform_ac": "A0A287B0F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F4/entry#A0A287B0F4-1", "sequence": { "sequence": "MASAKKTTEKRHDPVESIRRKIQAIRKREEISNPMRQIVKYQSSSFDSPQTNPKKDFEEVLRKMTAAHVPRPSLLFSNTEKEGAFNSSPQVVSPRTPSTSYLSSPDNATYSVILTSSENTSRPESKSSQNYTSLISQIRKQELSSHKDLNSYCSKNNFSTSTRDFDSTSDQSSEFFSPQDSVVKKLSLNEEGLKLGINDGEEDVTYSINRTWDEELLTSIFNACDTKCKELTWLSSSQGLVGVIKVIDYLRQTTSQGSEDGGLEELWNMLDSGKGDLPVNLETFQVAMKEWRARCRNKWEGMNSGSSSRMDDSAFEQDSIKSGGAIKMTTNITDSASPSFEVLGGDLSKGVLEVPDLITYAADLHFNKQKLEEENNNLKLALETLEEANTQLSEDCTELRLQIKSAHQAIMRTNLLKEELEELKISVNASEEQKTKIVAQNKQLETENRALILKIRILQEENAKNMMDIYKLEKKIEELFKTEREHQMKLHTFEDTLLNKDASLQKKDFSIEELKSTIREYGSIIENLRGEKAKLACELQHLQQELILNGIQLNVSGEHKCVNSEGEKSLLCELVLAQSAKNNETEWQCGLNSLSSLDTMMDQEMLLLLRELEQKGVEFTARLQRLHEDVSEVETLIDSSLQWVTHPEITVKEKWEDKLTEFKYIMEKKLNLCILLLNSLRNHKESLDEEFVKLIEILKRFRLEYFYFRKEFLSRQKQPEAITQLQEDAVNQEAILRKKVQEASQWLEEAERQVEDRNQAAHSAREEAKPWLHKLKEAISAQRNLQTINTELVNTCQTLEQKTRKPKTTVESLRTKLIQGQLHGLLFQSSLDEEFPPYYPFCCTDRIPHLLQEQLQCGPKRYSGQEARIHQRPLTFKHTCWYTPLLDALHLDSFTAVPRLELTPFSCVANQIHASCERPKDGEIEDGNLDVTRTHKCPGPTAGPPPGTDFPGCIRMSNDPSMEEDGVERLYSESLPQPRDCSTLPSPAHTSSTESTVTSSDSGSEMLSMASGDLDCKPLCEKEEERSASAVIKTEGESPAPKNTALQVSVSEEKTMSNQEATGEPETIDKHRKECIAGDAAISSLPATTVKSVNFRQSDNTSANEKEVEAEFLRLSLGFKCDLFTLEKRVKLEERSRDLAEENLKKEITNCLKLLESLTPLCEDDSQAQEIIKKLEKSITFLSQCTARVASRAEMLGAINQESRVSKAVEVMIQHVENLKRMYTKEHAELEELKQVLLQNERSYNPLEDEDDCQIKKRSASLNSKPSSLRRVTIASLPRNIGNAGMVAGMENNDRFGRRSSSWRILGSKQSEHRPSLHRFISTYSWADAEEEKCELKTKDDLGPPEEEIVERTRKPSLSEKKNNPSKWDVSSMYHTIASWATNLTTFIREANKALWLSVAFIVLFAALMSFFTGRFFQKSVDAAPTQDGDSWMTLERILWPFARLRHNGPPPV", 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{ "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0F4", "url": "https://www.uniprot.org/uniprotkb/A0A287B0F4" } ], "reference": [ { "type": 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"database": "Ensembl Peptide", "id": "ENSSSCP00000046470.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046470.1" } ] } }, { "isoform_ac": "A0A8W4F7M4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY0/entry#A0A8W4F7M4-1", "sequence": { "sequence": "MGRLLLLAFLMFGAATPVPPALRAFSSLHLSNSFSSRPAVAMKYSIHYIQQKVDHFGFNTDKTFKQRYLIADTHWRKDGGSILFYTGNEGDIIWFCNNTVVCQYLKNPNVSDSLLVQNIFQALNVYYNYSGQARCLNISETATSSLGALGWSYQACTEMVMPFCSNGIDDMFEPNSWDLKEFSDDCFRQWGVRPRPYWITTVYGGKNISSHTNIIFSNGELDPWSGGGVTKNVTDTLVAIVIPKGAHHLDLRANTAFDPTTVLLARSLEVRYMKQWIKDFYASLRRKH", "length": 288, "header": "tr|A0A8W4F7M4-1|A0A287AQY0_PIG Computationally mapped isoform of Lysosomal Pro-X carboxypeptidase OS=Sus scrofa OX=9823 GN=PRCP PE=1 SV=1 CANONICAL=A0A287AQY0-1" }, "locus": { "chromosome": "9", "start_pos": 17076227, "end_pos": 17003236, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098493.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098493.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075276.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075276.1" } ] } }, { "isoform_ac": "F1STV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY0/entry#F1STV0-1", "sequence": { "sequence": "MGRLLLLAFLMFGAATPVPPALRAFSSLHLSNSFSSRPAVAMKYSIHYIQQKVDHFGFNTDKTFKQRYLIADTHWRKDGGSILFYTGNEGDIIWFCNNTGFMWDVAEELKAMLVFAEHRYYGESLPFGAHSFKDSRHLNFLTSEQALADFAELIRHLKRKIPGTENQPVIALGGSYGGMLAAWFRMKYPHMVVGALASSAPIWHFENLVPCGVFMKTVTKDFRESGPNCSETIRRSWDAINRLARKGTGLHWLSEALHLCTPLTNSQDVQRLKDWISETWVNLAMVDYPYESDFLQPLPAWPIKVVCQYLKNPNVSDSLLVQNIFQALNVYYNYSGQARCLNISETATSSLGALGWSYQACTEMVMPFCSNGIDDMFEPNSWDLKEFSDDCFRQWGVRPRPYWITTVYGGKNISSHTNIIFSNGELDPWSGGGVTKNVTDTLVAIVIPKGAHHLDLRANTAFDPTTVLLARSLEVRYMKHGLHNWSRALTAFHKRESHFLCFSESRDFSWF", "length": 511, "header": "tr|F1STV0-1|F1STV0_PIG Computationally mapped isoform of Lysosomal Pro-X carboxypeptidase OS=Sus scrofa OX=9823 GN=PRCP PE=1 SV=3 CANONICAL=A0A287AQY0-1" }, "locus": { "chromosome": "9", "start_pos": 17076227, "end_pos": 17002900, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016254.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016254.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015820.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015820.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F7M4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7M4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515678", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515678", "resource": "KEGG Pathway" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-9970672", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9970672", "resource": "Reactome", "description": "FXIIa activates plasma kallikrein-kinin system" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PVG8-1", "protein_name": "Lysosomal Pro-X carboxypeptidase", "gene_name": "PRCP", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": 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"name": "regulation of blood vessel endothelial cell migration", "id": "GO:0043535", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043535", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY0" } ], "pmid": "" }, { "name": "angiotensin maturation", "id": "GO:0002003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002003", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY0" } ], "pmid": "" }, { "name": "negative regulation of systemic arterial blood pressure", "id": "GO:0003085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003085", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY0" } ], "pmid": "" }, { "name": "angiogenesis involved in wound healing", "id": "GO:0060055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060055", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY0" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY0" } ], "pmid": "" }, { "name": "basal part of cell", "id": "GO:0045178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045178", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "serine-type carboxypeptidase activity", "id": "GO:0004185", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004185", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY0" } ], "pmid": "" }, { "name": "serine-type exopeptidase activity", "id": "GO:0070008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070008", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY0" } ], "pmid": "" }, { "name": "dipeptidyl-peptidase activity", "id": "GO:0008239", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008239", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY0" } ], "pmid": "" }, { "name": "metallocarboxypeptidase activity", "id": "GO:0004181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004181", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQY0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQY0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" }, { "start_pos": 314, "end_pos": 316, "annotation": "n_glycosylation_sequon" }, { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" }, { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" }, { "start_pos": 412, "end_pos": 414, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-6798739", "name": "Exocytosis of azurophil granule membrane proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane, azurophil granule membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6798739", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798739" } ] }, { "id": "R-SSC-6800426", "name": "Exocytosis of ficolin-rich granule membrane proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane, ficolin-1-rich granule membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6800426", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6800426" } ] }, { "id": "R-SSC-9857945", "name": "prekallikrein:kininogen:C1QBP, C1QBP:KRT1, PLAUR:KRT1-> kallikrein:kininogen:C1QBP, C1QBP:KRT1, PLAUR:KRT1 (PRCP catalyst)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9857945", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9857945" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287AQY0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 493, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287AQY0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287AQY0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { 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"database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLD4", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5", "locus": {} } ], "crossref": [ { "id": "A0A287ARM5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287ARM5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002554", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002554", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524095", "url": "https://www.ncbi.nlm.nih.gov/gene/100524095", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001736", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001736", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032803", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032803", "database": "InterPro", "categories": [ "Protein 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"https://www.reactome.org/PathwayBrowser/#R-SSC-1855204", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029485", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029485", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020937168", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937168", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "81319", "url": "https://www.rhea-db.org/rhea/81319", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "81375", "url": "https://www.rhea-db.org/rhea/81375", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "81379", "url": "https://www.rhea-db.org/rhea/81379", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "82335", "url": "https://www.rhea-db.org/rhea/82335", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "82563", "url": "https://www.rhea-db.org/rhea/82563", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "82567", "url": "https://www.rhea-db.org/rhea/82567", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9V1", "url": "https://www.uniprot.org/uniprotkb/F1S9V1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9V1-1", "url": "https://www.uniprot.org/uniprotkb/F1S9V1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNAKAGPPELQVLGWLAGLWLGAVTLACLLWLVLSPPTQGQVHPDEGPPETWGLGSSLAWEALGGEARQLQNDSCRLVLVESIPQDLPSVVGSPSAQPLAQAWLQLLDAAQESIHVASFYWSLTGPDIGVNDSSSRLGEALLQKLQELLDRNVSLVVATSAPTLARKSTDLQVLAARGAQVRQVPMGKFTGGVLHSKFWVVDGRHVYVGSANMDWRSLTQVKELGAIIYNCSRLARDLEKTFQTYWVLGAPKAVLPKPWPRNVSTHFNRFHPFQDHFDGVPTAAYFSASPPALCPAGRTRDLDALLAVMGGAREFIYASVMEYFPTSRFRHPPRYWPALDTALRVAAVGRGVRVRLLVSCWLNTDPSMFPYLRSLQALSNPAANVSVDVKVFIVPVGNHSNIPFSRVNHSKFMVTEKAAYIGTSNWSEDYFTSTSGVGLVVSQRAPHTQPGVATMQEQLRQLFERDWSSRYAVGLDGQAQGQDCVWQG", "length": 488, "header": "tr|A0A287ARM5-1|A0A287ARM5_PIG Isoform 1 of spleen exonuclease OS=Sus scrofa OX=9823 GN=PLD4 PE=3 SV=3 CANONICAL=A0A287ARM5-1" }, "isoforms": [ { "isoform_ac": "A0A287ARM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5/entry#A0A287ARM5-1", "sequence": { "sequence": "MNAKAGPPELQVLGWLAGLWLGAVTLACLLWLVLSPPTQGQVHPDEGPPETWGLGSSLAWEALGGEARQLQNDSCRLVLVESIPQDLPSVVGSPSAQPLAQAWLQLLDAAQESIHVASFYWSLTGPDIGVNDSSSRLGEALLQKLQELLDRNVSLVVATSAPTLARKSTDLQVLAARGAQVRQVPMGKFTGGVLHSKFWVVDGRHVYVGSANMDWRSLTQVKELGAIIYNCSRLARDLEKTFQTYWVLGAPKAVLPKPWPRNVSTHFNRFHPFQDHFDGVPTAAYFSASPPALCPAGRTRDLDALLAVMGGAREFIYASVMEYFPTSRFRHPPRYWPALDTALRVAAVGRGVRVRLLVSCWLNTDPSMFPYLRSLQALSNPAANVSVDVKVFIVPVGNHSNIPFSRVNHSKFMVTEKAAYIGTSNWSEDYFTSTSGVGLVVSQRAPHTQPGVATMQEQLRQLFERDWSSRYAVGLDGQAQGQDCVWQG", "length": 488, "header": "tr|A0A287ARM5-1|A0A287ARM5_PIG Isoform 1 of spleen exonuclease OS=Sus scrofa OX=9823 GN=PLD4 PE=3 SV=3 CANONICAL=A0A287ARM5-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 3143857, "end_pos": 3137123, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043948.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043948.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046737.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046737.3" } ] } }, { "isoform_ac": "F1S9V1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5/entry#F1S9V1-1", "sequence": { "sequence": "MNAKAGPPEVLRPLQRTSAAPAWPCSVRLRSAGDQGAGTLQVLGWLAGLWLGAVTLACLLWLVLSPPTQGQVHPDEGPPETWGLGSSLAWEALGGEARQLQNDSCRLVLVESIPQDLPSVVGSPSAQPLAQAWLQLLDAAQESIHVASFYWSLTGPDIGVNDSSSRLGEALLQKLQELLDRNVSLVVATSAPTLARKSTDLQVLAARGAQVRQVPMGKFTGGVLHSKFWVVDGRHVYVGSANMDWRSLTQVKELGAIIYNCSRLARDLEKTFQTYWVLGAPKAVLPKPWPRNVSTHFNRFHPFQDHFDGVPTAAYFSASPPALCPAGRTRDLDALLAVMGGAREFIYASVMEYFPTSRFRHPPRYWPALDTALRVAAVGRGVRVRLLVSCWLNTDPSMFPYLRSLQALSNPAANVSVDVKVFIVPVGNHSNIPFSRVNHSKFMVTEKAAYIGTSNWSEDYFTSTSGVGLVVSQRAPHTQPGVATMQEQLRQLFERDWSSRYAVGLDGQAQGQDCVWQG", "length": 518, "header": "tr|F1S9V1-1|F1S9V1_PIG Computationally mapped isoform of spleen exonuclease OS=Sus scrofa OX=9823 GN=PLD4 PE=3 SV=1 CANONICAL=A0A287ARM5-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 3143857, "end_pos": 3137123, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002839.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002839.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002767.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002767.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524095", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524095", "resource": "KEGG Pathway" }, { "id": "R-SSC-1855204", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855204", "resource": "Reactome", "description": "Synthesis of IP3 and IP4 in the cytosol" }, { "id": "R-SSC-2029485", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029485", "resource": "Reactome", "description": "Role of phospholipids in phagocytosis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "trans-Golgi network membrane", "id": "GO:0032588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032588", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "phagocytic vesicle", "id": "GO:0045335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045335", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "inflammatory response", "id": "GO:0006954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006954", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "immune system process", "id": "GO:0002376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002376", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "phagocytosis", "id": "GO:0006909", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006909", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "intralumenal vesicle formation", "id": "GO:0070676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070676", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "regulation of cytokine production involved in inflammatory response", "id": "GO:1900015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900015", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "negative regulation of toll-like receptor 7 signaling pathway", "id": "GO:0034156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034156", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "negative regulation of toll-like receptor 9 signaling pathway", "id": "GO:0034164", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034164", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "single-stranded DNA 5'-3' DNA exonuclease activity", "id": "GO:0045145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045145", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "acyltransferase activity, transferring groups other than amino-acyl groups", "id": "GO:0016747", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016747", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" }, { "name": "5'-3' RNA exonuclease activity", "id": "GO:0004534", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004534", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARM5", "url": "https://www.uniprot.org/uniprotkb/A0A287ARM5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" }, { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 384, "end_pos": 386, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" }, { "start_pos": 408, "end_pos": 410, "annotation": "n_glycosylation_sequon" }, { "start_pos": 425, "end_pos": 427, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "81319", "name": "", "equation": "a ribonucleoside 3'-phosphate-2'-3'-cyclophospho-GMP + H2O = a ribonucleoside 3'-phosphate + 2',3'-cyclophospho-GMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "81319", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/81319" } ] }, { "id": "81375", "name": "", "equation": "a 5'-end 5'-dephospho-ribonucleotidyl-ribonucleotide-RNA + H2O = a ribonucleoside 3'-phosphate + a 5'-end dephospho-ribonucleoside-RNA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "81375", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/81375" } ] }, { "id": "81379", "name": "", "equation": "a 5'-end 5'-dephospho-2'-deoxyribonucleotidyl-2'-deoxyribonucleotide in single-stranded DNA + H2O = a 5'-end dephospho-2'-deoxyribonucleoside in single-stranded DNA + a 2'-deoxyribonucleoside 3'-phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "81379", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/81379" } ] }, { "id": "82335", "name": "", "equation": "a 5'-end 5'-phospho-2'-deoxyribonucleotide in single-stranded DNA + H2O = a 5'-end 5'-dephospho-2'-deoxyribonucleotide in single-stranded DNA + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "82335", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/82335" } ] }, { "id": "82563", "name": "", "equation": "an (R,S)-glycero-3-phospho-(3'-acyl-1'-glycerol) + a 1-acyl-sn-glycerol = a 3-acyl-sn-glycero-1-phospho-(3'-acyl-1'-sn-glycerol) + glycerol", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "82563", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/82563" } ] }, { "id": "82567", "name": "", "equation": "3-lyso-sn-glycero-1-phospho-(3'-(9Z-octadecenoyl)-1'-sn-glycerol) + 1-(9Z-octadecenoyl)-sn-glycerol = 3-(9Z-octadecenoyl)-sn-glycero-1-phospho-(3'-(9Z-octadecenoyl)-1'-sn-glycerol) + glycerol", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "82567", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/82567" } ] }, { "id": "R-SSC-1855214", "name": "PL(C)D4:3xCa2+ hydrolse PI(4,5)P2 to I(1,4,5)P3 and DAG at the ER membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-2023856" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1855214", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855214" } ] }, { "id": "R-SSC-2029471", "name": "Hydrolysis of PC to PA by PLD", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [ "R-ALL-1602448" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2029471", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029471" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1602448", "participant_name": "PA [plasma membrane]", "crossref": [ { "id": "C00416", "database": "COMPOUND", "url": "" }, { "id": "57739", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-2023856", "participant_name": "PI(4,5)P2 [endoplasmic reticulum membrane]", "crossref": [ { "id": "58456", "database": "ChEBI", "url": "" }, { "id": "C04637", "database": "COMPOUND", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287ARM5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 488, "overlap": "1.0", "method": "AlphaFold", 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"url": "https://www.ensembl.org/id/ENSSSCP00000036672.3" } ] } }, { "isoform_ac": "A0A5G2QRJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6/entry#A0A5G2QRJ6-1", "sequence": { "sequence": "MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRSILPGDKTNKKKKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKNPQAVLDVLEFYNSKKTSNSQKYMSFTDKSAEDYNSSNTLNVKTVSETPAVPPVSEDEDDDDDATPPPVIAPRPEHTKSVYTRSVIEPLPITPTRDVATSPISPTESTTTPPDALTRNTEKQKKKPKMSDEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIAKPLSSLTPLIAAAKEATKNNH", "length": 543, "header": "tr|A0A5G2QRJ6-1|A0A5G2QRJ6_PIG Isoform 1 of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=CLNS1A PE=1 SV=2 CANONICAL=A0A5G2QRJ6-1" }, "locus": { "chromosome": "9", "start_pos": 11895562, "end_pos": 11831336, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081433.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081433.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066687.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066687.2" } ] } }, { "isoform_ac": "A0A5G2QV02-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6/entry#A0A5G2QV02-1", "sequence": { "sequence": "MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRSILPGDKTNKKKKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKNPQAVLDVLEFYNSKKTSNSQKYMSFTDKSAEDYNSSNTLNVKTVSETPAVPPVSEDEDDDDDATPPPVIAPRPEHTKSVYTRSVIEPLPITPTRDVATSPISPTESTTTPPDALTRNTEKQKKKPKMSDEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQCSRL", "length": 519, "header": "tr|A0A5G2QV02-1|A0A5G2QV02_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=PAK1 PE=1 SV=1 CANONICAL=A0A5G2QRJ6-1" }, "locus": { "chromosome": "9", "start_pos": 11895562, "end_pos": 11831202, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067075.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067075.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068663.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068663.1" } ] } }, { "isoform_ac": "A0A5G2QY88-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6/entry#A0A5G2QY88-1", "sequence": { "sequence": "MPEQWARLLQTSNITKSEQKKNPQAVLDVLEFYNSKKTSNSQKYMSFTDKSAEDYNSSNTLNVKTVSETPAVPPVSEDEDDDDDATPPPVIAPRPEHTKSVYTRSVIEPLPITPTRDVATSPISPTESTTTPPDALTRNTEKQKKKPKMSDEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQVTVHMQGIPAQELPSATGEAIKNNSSKRSPKAFLIHFCL", "length": 457, "header": "tr|A0A5G2QY88-1|A0A5G2QY88_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=PAK1 PE=1 SV=1 CANONICAL=A0A5G2QRJ6-1" }, "locus": { "chromosome": "9", "start_pos": 11877467, "end_pos": 11836446, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085626.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085626.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066911.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066911.1" } ] } }, { "isoform_ac": "A0A5G2QYG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6/entry#A0A5G2QYG3-1", "sequence": { "sequence": "MPEQWARLLQTSNITKSEQKKNPQAVLDVLEFYNSKKTSNSQKYMSFTDKSAEDYNSSNTLNVKTVSETPAVPPVSEDEDDDDDATPPPVIAPRPEHTKSVYTRSVIEPLPITPTRDVATSPISPTESTTTPPDALTRNTEKQKKKPKMSDEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQNGKLSCVFCSFSFSASVPEDCKAPLQPHSTDCCSK", "length": 453, "header": "tr|A0A5G2QYG3-1|A0A5G2QYG3_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=CLNS1A PE=1 SV=2 CANONICAL=A0A5G2QRJ6-1" }, "locus": { "chromosome": "9", "start_pos": 11877467, "end_pos": 11831358, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071196.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071196.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069956.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069956.2" } ] } }, { "isoform_ac": "A0A5G2R5X6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6/entry#A0A5G2R5X6-1", "sequence": { "sequence": "MPEQWARLLQTSNITKSEQKKNPQAVLDVLEFYNSKKTSNSQKYMSFTDKSAEDYNSSNTLNVKTVSETPAVPPVSEDEDDDDDATPPPVIAPRPEHTKSVYTRSVIEPLPITPTRDVATSPISPTESTTTPPDALTRNTEKQKKKPKMSDEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQVGKLRFVFSNFSVITASVPEDCKAPLQPHSTDCCSK", "length": 454, "header": "tr|A0A5G2R5X6-1|A0A5G2R5X6_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=PAK1 PE=1 SV=1 CANONICAL=A0A5G2QRJ6-1" }, "locus": { "chromosome": "9", "start_pos": 11877467, "end_pos": 11831358, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081815.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081815.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072641.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072641.1" } ] } }, { "isoform_ac": "A0A5K1VSS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6/entry#A0A5K1VSS6-1", "sequence": { "sequence": "MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRSILPGDKKGKERPEISLPSDFEHTIHVGFDAVTGEFTVSPGSGFPSGRPVTGMPEQWARLLQTSNITKSEQKKNPQAVLDVLEFYNSKKTSNSQKYMSFTGMMIVSRNVKTVSETPAVPPVSEDEDDDDDATPPPVIAPRPEHTKSVYTRSVIEPLPITPTRDVATSPISPTESTTTPPDALTRNTEKQKKKPKMSDEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQVTELPSATGEAIKNNSSKRSPKAFLIHFCL", "length": 550, "header": "tr|A0A5K1VSS6-1|A0A5G2QRJ6_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=CLNS1A PE=1 SV=2 CANONICAL=A0A5G2QRJ6-1" }, "locus": { "chromosome": "9", "start_pos": 11895562, "end_pos": 11836446, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035648.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035648.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030973.3", "url": "https://www.ensembl.org/id/ENSSSCP00000030973.3" } ] } }, { "isoform_ac": "F1SUK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6/entry#F1SUK2-1", "sequence": { "sequence": "MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLKELNKLRNVIMSLFLFPFLCFSCKISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKNPQAVLDVLEFYNSKKTSNSQKYMSFTEGFHLKDEDDDDDATPPPVIAPRPEHTKSSTTTPPDALTRNTEKQKKKPKMSDEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIAKPLSSLTPLIAAAKEATKNNH", "length": 485, "header": "tr|F1SUK2-1|A0A5G2QRJ6_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=CLNS1A PE=1 SV=3 CANONICAL=A0A5G2QRJ6-1" }, "locus": { "chromosome": "9", "start_pos": 11895562, "end_pos": 11831336, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016232.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016232.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015799.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015799.4" } ] } }, { "isoform_ac": "K7GRH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6/entry#K7GRH8-1", "sequence": { "sequence": "MSNNGLDIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGSKPLPPNPEEKKKKDRFYRSILPGDKKGKERPEISLPSDFEHTIHVGFDAVTGEFTWPLGSGLCGMPEQWARLLQTSNITKSEQKKNPQAVLDVLEFYNSKKTSNSQKYMSFTGMMIVSRNVKTVSETPAVPPVSEDEDDDDDATPPPVIAPRPEHTKSVYTRSVIEPLPITPTRDVATSPISPTESTTTPPDALTRNTEKQKKKPKMSDEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQVTVHMQGNCGNDILLVWSKILPDCGESELGDY", "length": 546, "header": "tr|K7GRH8-1|A0A5G2QRJ6_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=CLNS1A PE=1 SV=1 CANONICAL=A0A5G2QRJ6-1" }, "locus": { "chromosome": "9", "start_pos": 11895562, "end_pos": 11835830, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035014.3", "url": "https://www.ensembl.org/id/ENSSSCT00000035014.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030505.3", "url": "https://www.ensembl.org/id/ENSSSCP00000030505.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 210, "start_aa": "Thr", "end_pos": 210, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr210", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 223, "start_aa": "Thr", "end_pos": 223, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr223", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5K1VSS6", "url": "https://www.uniprot.org/uniprotkb/A0A5K1VSS6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-202433", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202433", "resource": "Reactome", "description": "Generation of second messenger molecules" }, { "id": "R-SSC-2029482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "resource": "Reactome", "description": "Regulation of actin dynamics for phagocytic cup 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"https://www.reactome.org/PathwayBrowser/#R-SSC-9013424", "resource": "Reactome", "description": "RHOV GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 19, "go_terms": [ { "name": "negative regulation of cell proliferation involved in contact inhibition", "id": "GO:0060244", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060244", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "protein localization to cytoplasmic stress granule", "id": "GO:1903608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903608", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "positive regulation of cell migration", "id": "GO:0030335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030335", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "actin cytoskeleton organization", "id": "GO:0030036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030036", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "positive regulation of stress fiber assembly", "id": "GO:0051496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051496", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "positive regulation of intracellular estrogen receptor signaling pathway", "id": "GO:0033148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033148", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "wound healing", "id": "GO:0042060", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042060", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "hepatocyte growth factor receptor signaling pathway", "id": "GO:0048012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048012", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "branching morphogenesis of an epithelial tube", "id": "GO:0048754", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048754", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "positive regulation of microtubule nucleation", "id": "GO:0090063", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090063", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "regulation of axonogenesis", "id": "GO:0050770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050770", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "regulation of actin cytoskeleton organization", "id": "GO:0032956", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032956", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "cellular response to starvation", "id": "GO:0009267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009267", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "regulation of MAPK cascade", "id": "GO:0043408", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043408", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "collagen binding", "id": "GO:0005518", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005518", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "gamma-tubulin binding", "id": "GO:0043015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043015", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "actin filament", "id": "GO:0005884", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005884", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "ruffle", "id": "GO:0001726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001726", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 153, "end_pos": 155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 477, "end_pos": 479, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-2029454", "name": "Autophosphorylation of PAK1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [ "R-SSC-399819" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2029454", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029454" } ] }, { "id": "R-SSC-2029456", "name": "RAC1 and CDC42 activate PAK1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2029456", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029456" } ] }, { "id": "R-SSC-2029460", "name": "PAK1 phosphorylates LIMK1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-397785" ], "output_participant_list": [ "R-SSC-399816" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2029460", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029460" } ] }, { "id": "R-SSC-2730856", "name": "Autophosphorylation of PAK", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2730856", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2730856" } ] }, { "id": "R-SSC-2730889", "name": "Recruitment of PAK to the membrane by binding active RAC1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2730889", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2730889" } ] }, { "id": "R-SSC-389788", "name": "Activation of PAKs by RAC1 and CDC42", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-389788", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389788" } ] }, { "id": "R-SSC-3928619", "name": "PAK1 binds RAC1:GTP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3928619", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928619" } ] }, { "id": "R-SSC-3928620", "name": "PAK1 autophosphorylates", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3928620", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928620" } ] }, { "id": "R-SSC-3928625", "name": "PAKs autophosphorylate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3928625", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928625" } ] }, { "id": "R-SSC-3928641", "name": "PAK binds RAC and bPIX", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3928641", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928641" } ] }, { "id": "R-SSC-399930", "name": "Activation of PAK by Rac1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-399930", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399930" } ] }, { "id": "R-SSC-399939", "name": "Autophosphorylation of PAK", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-399939", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399939" } ] }, { "id": "R-SSC-399952", "name": "Phosphorylation of LIMK-1 by PAK", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-399952", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399952" } ] }, { "id": "R-SSC-430183", "name": "NCK binds PAK", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-430183", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-430183" } ] }, { "id": "R-SSC-445072", "name": "Interaction of PAK1 with Rac1-GTP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [ "R-SSC-162629" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-445072", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-445072" } ] }, { "id": "R-SSC-5357445", "name": "PAK1-3 dimer disassociates", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5357445", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5357445" } ] }, { "id": "R-SSC-5357472", "name": "PAK1-3 autophosphorylates", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5357472", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5357472" } ] }, { "id": "R-SSC-5357477", "name": "PAK1-3 phosphorylates VE-cadherin", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5357477", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5357477" } ] }, { "id": "R-SSC-5357483", "name": "RAC1 binds PAK1-3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5357483", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5357483" } ] }, { "id": "R-SSC-5627775", "name": "Autophosphorylation of PAK1,2,3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5627775", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5627775" } ] }, { "id": "R-SSC-5668947", "name": "PAK1 phosphorylates myosin phosphatase", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5668947", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668947" } ] }, { "id": "R-SSC-5668984", "name": "PAK1 or PAK2 phosphorylates MYLK", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-445807" ], "output_participant_list": [ "R-SSC-5668975" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5668984", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668984" } ] }, { "id": "R-SSC-5669158", "name": "NF2 binds PAK1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5669158", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5669158" } ] }, { "id": "R-SSC-5669240", "name": "FLNA binds PAK1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5669240", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5669240" } ] }, { "id": "R-SSC-5669250", "name": "PAK1 phosphorylates FLNA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5669250", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5669250" } ] }, { "id": "R-SSC-5687086", "name": "PAK1,2,3 phosphorylates MAPK6,4", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-5686979" ], "output_participant_list": [ "R-SSC-5687019" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5687086", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687086" } ] }, { "id": "R-SSC-8964604", "name": "CDC42 in GNB/GNG:PAK1:ARHGEF6:CDC42 is activated", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8964604", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964604" } ] }, { "id": "R-SSC-8964614", "name": "PAK1 in GNB/GNG:PAK1:ARHGEF6:Active CDC42 is activated", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8964614", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964614" } ] }, { "id": "R-SSC-8964619", "name": "PAK1 binds ARHGEF6", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8964619", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964619" } ] }, { "id": "R-SSC-8964634", "name": "CDC42 binds GNB/GNG:PAK1:ARHGEF6 complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8964634", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964634" } ] }, { "id": "R-SSC-9013145", "name": "RAC1 binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9013145", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013145" } ] }, { "id": "R-SSC-9013157", "name": "CDC42 binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9013157", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013157" } ] }, { "id": "R-SSC-9014294", "name": "RAC2 binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9014294", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9014294" } ] }, { "id": "R-SSC-9018746", "name": "RHOQ binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9018746", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018746" } ] }, { "id": "R-SSC-9018758", "name": "RHOH binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9018758", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018758" } ] }, { "id": "R-SSC-9018766", "name": "RHOU binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9018766", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018766" } ] }, { "id": "R-SSC-9018794", "name": "RHOV binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9018794", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018794" } ] }, { "id": "R-SSC-9018808", "name": "RAC3 binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9018808", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018808" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-162629", "participant_name": "PAK1 [cytosol]", "crossref": [ { "id": "ENSSSCG00000014878", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000081433", "database": "ENSEMBL", "url": "" }, { "id": "86773", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000066687", "database": "ENSEMBL", "url": "" }, { "id": "A0A5G2QRJ6", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-397785", "participant_name": "LIMK1 [cytosol]", "crossref": [ { "id": "I3LHP5", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000030378", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000023592", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000025955", "database": "ENSEMBL", "url": "" }, { "id": "XP_020941994.1", "database": "RefSeq", "url": "" }, { "id": "89727", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-399816", "participant_name": "phospho-p-T508-LIMK1 [cytosol]", "crossref": [ { "id": "ENSSSCT00000025955", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000030378", "database": "ENSEMBL", "url": "" }, { "id": "89727", "database": "VGNC", "url": "" }, { "id": "I3LHP5", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000023592", "database": "ENSEMBL", "url": "" }, { "id": "XP_020941994.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-399819", "participant_name": "phospho-p-S144,T423-PAK1 [cytosol]", "crossref": [ { "id": "ENSSSCP00000066687", "database": "ENSEMBL", "url": "" }, { "id": "86773", "database": "VGNC", "url": "" }, { "id": "A0A5G2QRJ6", "database": "UniProt", "url": "" }, { "id": "ENSSSCT00000081433", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000014878", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-445807", "participant_name": "MYLK(1-1914) [cytosol]", "crossref": [ { "id": "A0A287A9M0", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000011867", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000040501", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000057544", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-5668975", "participant_name": "phospho-p-S1208,S1759-MYLK(1-1914) [cytosol]", "crossref": [ { "id": "ENSSSCP00000040501", "database": "ENSEMBL", "url": "" }, { "id": "A0A287A9M0", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000011867", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000057544", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-5686979", "participant_name": "MAPK6 [cytosol]", "crossref": [ { "id": "F1RZB8", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000004624", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000043903", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000053184", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000050785", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000041237", "database": "ENSEMBL", "url": "" }, { "id": "XP_005659656.1", "database": "RefSeq", "url": "" }, { "id": "XP_013848440.1", "database": "RefSeq", "url": "" }, { "id": "XP_020950993.1", "database": "RefSeq", "url": "" }, { "id": "XP_001925326.1", "database": "RefSeq", "url": "" }, { "id": "XP_020950998.1", "database": "RefSeq", "url": "" }, { "id": "XP_005659658.1", "database": "RefSeq", "url": "" }, { "id": "103123", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-5687019", "participant_name": "phospho-p-S189 MAPK6 [cytosol]", "crossref": [ { "id": "XP_013848440.1", "database": "RefSeq", "url": "" }, { "id": "XP_005659658.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000053184", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000004624", "database": "ENSEMBL", "url": "" }, { "id": "XP_001925326.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCT00000041237", "database": "ENSEMBL", "url": "" }, { "id": "F1RZB8", "database": "UniProt", "url": "" }, { "id": "XP_005659656.1", "database": "RefSeq", "url": "" }, { "id": "XP_020950998.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000043903", "database": "ENSEMBL", "url": "" }, { "id": "103123", "database": "VGNC", "url": "" }, { "id": "XP_020950993.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCT00000050785", "database": "ENSEMBL", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRJ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 543, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRJ6-F1.pdb", "url_external": 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"id": "A0A8W4FJW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GKN2", "url": "https://www.uniprot.org/uniprotkb/K7GKN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GKN2-1", "url": "https://www.uniprot.org/uniprotkb/K7GKN2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVYSNCESKEPDSVSASNHLLLNGNDELVEKSHKTGPENNLYSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHLKKGYMIVKCRGQQDIQDQLSLAKALQKEQAFFENHEHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYGRELPFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYRGALQKVREKEAEEEKNRKSNQYFLSSPAPSSDPSIAEIFQHLIAYHQEVGKRISSHIPLIIQFFILRTFGQQLQKSMLQLLQNKDQYDWLLRERSDTSDKRKFLKERLMRLTQARRRPAKFPG", "length": 661, "header": "tr|A0A5G2QV15-1|A0A5G2QV15_PIG Isoform 1 of Interferon-induced GTP-binding protein Mx1 OS=Sus scrofa OX=9823 GN=MX1 PE=1 SV=2 CANONICAL=A0A5G2QV15-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QV15-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15/entry#A0A5G2QV15-1", "sequence": { "sequence": "MVYSNCESKEPDSVSASNHLLLNGNDELVEKSHKTGPENNLYSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHLKKGYMIVKCRGQQDIQDQLSLAKALQKEQAFFENHEHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQLFENQYGRELPFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYRGALQKVREKEAEEEKNRKSNQYFLSSPAPSSDPSIAEIFQHLIAYHQEVGKRISSHIPLIIQFFILRTFGQQLQKSMLQLLQNKDQYDWLLRERSDTSDKRKFLKERLMRLTQARRRPAKFPG", "length": 661, "header": "tr|A0A5G2QV15-1|A0A5G2QV15_PIG Isoform 1 of Interferon-induced GTP-binding protein Mx1 OS=Sus scrofa OX=9823 GN=MX1 PE=1 SV=2 CANONICAL=A0A5G2QV15-1" }, "locus": { "chromosome": "13", "start_pos": 204868474, "end_pos": 204847561, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089370.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089370.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067979.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067979.2" } ] } }, { "isoform_ac": "A0A8W4FJW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15/entry#A0A8W4FJW0-1", "sequence": { "sequence": "MSSANGVLWLKRISKMVMTPYVNKSSSSKISTGERVARFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYRGALQKVREKEAEEEKNRKSNQYFLSSPAPSSDPSIAEIFQHLIAYHQEVGKRISSHIPLIIQFFILRTFGQQLQKSMLQLLQNKDQYDWLLRERSDTSDKRKFLKERLMRLTQAPARQVPRLNRALQAARGLQGTSPGNEDQPPSLTD", "length": 278, "header": "tr|A0A8W4FJW0-1|A0A5G2QV15_PIG Computationally mapped isoform of Interferon-induced GTP-binding protein Mx1 OS=Sus scrofa OX=9823 GN=MX1 PE=1 SV=1 CANONICAL=A0A5G2QV15-1" }, "locus": { "chromosome": "13", "start_pos": 204868554, "end_pos": 204861389, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101002.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101002.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078595.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078595.1" } ] } }, { "isoform_ac": "K7GKN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15/entry#K7GKN2-1", "sequence": { "sequence": "MVYSNCESKEPDSVSASNHLLLNGNDELVEKSHKTGPENNLYSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNLVFHLKKGYMIVKCRGQQDIQDQLSLAKALQKEQAFFENHEHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGEELVVEYECRLFTKMRNEFCKWSAVVEKNFKNGYDAICKQIQFVNYKTFETIIKKQVSVLEEPAVDMLHTVTDLVRLAFTDVSETNFNEFFNLHRTAKSKIEDIKLEQEKEAETSIRLHFQMEQIVYCQDQVYRGALQKVREKEAEEEKNRKSNQYFLSSPAPSSDPSIAEIFQHLIAYHQEVGKRISSHIPLIIQFFILRTFGQQLQKSMLQLLQNKDQYDWLLRERSDTSDKRKFLKERLMRLTQARRRPAKFPG", "length": 650, "header": "tr|K7GKN2-1|A0A5G2QV15_PIG Computationally mapped isoform of Interferon-induced GTP-binding protein Mx1 OS=Sus scrofa OX=9823 GN=MX1 PE=1 SV=3 CANONICAL=A0A5G2QV15-1" }, "locus": { "chromosome": "13", "start_pos": 204868474, "end_pos": 204847561, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000034038.3", "url": "https://www.ensembl.org/id/ENSSSCT00000034038.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029166.3", "url": "https://www.ensembl.org/id/ENSSSCP00000029166.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "K7GKN2", "url": "https://www.uniprot.org/uniprotkb/K7GKN2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1169408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169408", "resource": "Reactome", "description": "ISG15 antiviral mechanism" } ], "orthologs": [ { "uniprot_canonical_ac": "P20591-1", "protein_name": "Interferon-induced GTP-binding protein Mx1", "gene_name": "MX1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSEVDIAKADPAAASHPLLLNGDATVAQKNPGSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYCQDQVYRGALQKVREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLARLTQARRRLAQFPG", "length": 662 }, "evidence": [ { "id": "A0A5G2QV15", "url": "https://omabrowser.org/oma/group/A0A5G2QV15/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P79135-1", "protein_name": "Interferon-induced GTP-binding protein Mx1", "gene_name": "MX1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVHSDLGIEELDSPESSLNGSEDMESKSNLYSQYEEKVRPCIDLIDSLRSLGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLRLKKLGNEDEWKGKVSFLDKEIEIPDASQVEKEISEAQIAIAGEGTGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPPDIEYQIKSLIRKYILRQETINLVVVPANVDIATTEALRMAQEVDPQGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQDIKHRMSLDKALQRERIFFEDHAHFRDLLEEGKATIPCLAERLTSELIMHICKTLPLLENQIKETHQRITEELQKYGKDIPEEESEKMFCLIEKIDTFNKEIISTIEGEEFVEQYDSRLFTKVRAEFSKWSAVVEKNFEKGYEAIRKEIKQFENRYRGRELPGFVNYKTFETIIKKQVRVLEEPAVDMLHTVTDIIRNTFTDVSGKHFNEFFNLHRTAKSKIEDIRLEQENEAEKSIRLHFQMEQLVYCQDQVYRRALQQVREKEAEEEKNKKSNHYFQSQVSEPSTDEIFQHLTAYQQEVSTRISGHIPLIIQFFVLRTYGEQLKKSMLQLLQDKDQYDWLLKERTDTRDKRKFLKERLERLTRARQRLAKFPG", "length": 648 }, "evidence": [ { "id": "A0A5G2QV15", "url": "https://omabrowser.org/oma/group/A0A5G2QV15/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9WVP9-1", "protein_name": "Interferon-induced GTP-binding protein Mx2", "gene_name": "Mx2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLSTEENTGVDSVNLPSGETGLGEKDQESVNNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLRKLNEGEEWRGKVSYDDIEVELSDPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQKQETINLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDRGTEDKVVDVVRNLVYHLKKGYMIVKCRGQQDIQEQLSLTEALQNEQIFFKEHPHFRVLLEDGKATVPCLAERLTAELISHICKSLPLLENQIKESHQSASEELQKYGMDIPEDDSEKTFFLIEKINAFNQDITALVQGEENVAEGECRLFTRLRKEFLSWSKEIEKNFAKGYAVLYNEVWAFEKQYRGRELPGFVNYKTFENIIRRQIKTLEEPAIEMLHTVTEIVRAAFTSVSEKNFSEFYNLHRTTKSKLEDIRLEQEKEAEMSIRLHFKMEQIIYCQDQIYRGALQKVREEEAEEEKKTKHGTSSSSQSQDLQTSSMAEIFQHLNAYRQEAHNRISSHVPLIIQYFILKMFAERLQKGMLQLLQDKDSCSWLLKEQSDTSEKRKFLKERLARLAQARRRLAKFPG", "length": 655 }, "evidence": [ { "id": "A0A5G2QV15", "url": "https://omabrowser.org/oma/group/A0A5G2QV15/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "cellular response to type I interferon", "id": "GO:0071357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "negative regulation of viral genome replication", "id": "GO:0045071", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045071", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "endosomal transport", "id": "GO:0016197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "negative regulation of intracellular transport of viral material", "id": "GO:1901253", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901253", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "interleukin-27-mediated signaling pathway", "id": "GO:0070106", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070106", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "synaptic vesicle budding from presynaptic endocytic zone membrane", "id": "GO:0016185", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016185", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "antiviral innate immune response", "id": "GO:0140374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140374", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 10, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" }, { "name": "presynapse", "id": "GO:0098793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098793", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV15" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": 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"tr|A0A5G2QQ64-1|A0A5G2QQ64_PIG Isoform 1 of long-chain-fatty-acid--CoA ligase OS=Sus scrofa OX=9823 GN=SLC27A2 PE=1 SV=1 CANONICAL=A0A5G2QQ64-1" }, "locus": { "chromosome": "1", "start_pos": 121578910, "end_pos": 121530746, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083114.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083114.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066206.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066206.1" } ] } }, { "isoform_ac": "F1SQH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64/entry#F1SQH7-1", "sequence": { "sequence": "MLPVIYAALAGVLLLPLLVNLCCPYFFEDLNYFLKVARVTRRMRSYRQRRPVHTILNAFLDRARQTPRKPFLLFQDETLTYAQVDRRSNQVARALRDHLGLRQGDCVAVFMGNEPAYVWLWLGLAKLGCAMACLNYNIRGKSLLHCFQCCGAKVLLASPDLQAAIEEVLPSLKKDDVAIYYMSRSSNTDGVDSFLDKVDEVSTEPIPESWRSEVNFSTPALYIYTSGTTGLPKAAMINHLRIWYGTGLAIASGVKEDDVLYTTLPLYHSAALMVGLHGCIVSGATLVLRTKFSASHFWDDCRKYKVTVIQYIGELLRYLCNSPQKPNDRDHKVRMAMGNGLRADVWREFIKRFGDIHIYEFYASTEGNIGFMNYTRKIGAVGRVNYLQKKVVTYELIKYDVEKDEPVRDGNGYCIKVPKGEVGLLVCKITNLTPFNGYAGGKTQTEKKKLRDVFKKGDVYFNSGDLLMIDHENFIYFHDRVGDTFRWKGENVATTEVADVVGMVDFVQEVNVYGVSVPGHEGRIGMASIKMKENHEFDGKKLFKHVADYLPNYARPRFLRIQDTIEITGTFKHRKVTLVEEGFNPAVIKDALYFLDDKAETYVPMTEDIYNAINDKALKL", "length": 620, "header": "tr|F1SQH7-1|A0A5G2QQ64_PIG Computationally mapped isoform of long-chain-fatty-acid--CoA ligase OS=Sus scrofa OX=9823 GN=SLC27A2 PE=1 SV=3 CANONICAL=A0A5G2QQ64-1" }, "locus": { "chromosome": "1", "start_pos": 121578910, "end_pos": 121530746, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005128.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005128.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005003.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005003.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQH7", "url": "https://www.uniprot.org/uniprotkb/F1SQH7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:494011", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:494011", "resource": "KEGG Pathway" }, { "id": "R-SSC-193368", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193368", "resource": "Reactome", "description": "Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol" }, { "id": "R-SSC-193775", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193775", "resource": "Reactome", "description": "Synthesis of bile acids and bile salts via 24-hydroxycholesterol" }, { "id": "R-SSC-389599", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389599", "resource": "Reactome", "description": "Alpha-oxidation of phytanate" }, { "id": "R-SSC-390247", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-390247", "resource": "Reactome", "description": "Beta-oxidation of very long chain fatty acids" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-75105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75105", "resource": "Reactome", "description": "Fatty acyl-CoA biosynthesis" }, { "id": "R-SSC-9033241", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033241", "resource": "Reactome", "description": "Peroxisomal protein import" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "peroxisomal membrane", "id": "GO:0005778", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005778", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "endoplasmic reticulum lumen", "id": "GO:0005788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005788", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "long-chain fatty acid metabolic process", "id": "GO:0001676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001676", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "fatty acid beta-oxidation", "id": "GO:0006635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006635", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "bile acid biosynthetic process", "id": "GO:0006699", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006699", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "long-chain fatty acid import into cell", "id": "GO:0044539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044539", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "bile acid metabolic process", "id": "GO:0008206", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008206", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "fatty acid alpha-oxidation", "id": "GO:0001561", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001561", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "methyl-branched fatty acid metabolic process", "id": "GO:0097089", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097089", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "nucleotide binding", "id": "GO:0000166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000166", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "long-chain fatty acid-CoA ligase activity", "id": "GO:0004467", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004467", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "long-chain fatty acid transmembrane transporter activity", "id": "GO:0005324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005324", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "enzyme binding", "id": "GO:0019899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019899", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "very long-chain fatty acid-CoA ligase activity", "id": "GO:0031957", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031957", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "phytanate-CoA ligase activity", "id": "GO:0050197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" }, { "name": "pristanate-CoA ligase activity", "id": "GO:0070251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070251", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ64" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 320, "end_pos": 322, "annotation": "n_glycosylation_sequon" }, { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "15421", "name": "", "equation": "a long-chain fatty acid + ATP + CoA = a long-chain fatty acyl-CoA + AMP + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "15421", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/15421" } ] }, { "id": "33639", "name": "", "equation": "tetracosanoate + ATP + CoA = tetracosanoyl-CoA + AMP + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "33639", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/33639" } ] }, { "id": "54536", "name": "", "equation": "a very long-chain fatty acid + ATP + CoA = a very long-chain fatty acyl-CoA + AMP + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54536", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54536" } ] }, { "id": "R-SSC-193401", "name": "THCA is conjugated with Coenzyme A (SLC27A2 VLCS)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-192013" ], "output_participant_list": [ "R-ALL-192096" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-193401", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193401" } ] }, { "id": "R-SSC-193424", "name": "DHCA is conjugated with Coenzyme A (SLC27A2 VLCS)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-193505" ], "output_participant_list": [ "R-ALL-193457" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-193424", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193424" } ] }, { "id": "R-SSC-193727", "name": "TetraHCA is conjugated with Coenzyme A (SLC27A2 VLCS)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-193762" ], "output_participant_list": [ "R-ALL-193741" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-193727", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193727" } ] }, { "id": "R-SSC-193743", "name": "3,7,24THCA is conjugated with Coenzyme A (SLC27A2 VLCS)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-193778" ], "output_participant_list": [ "R-ALL-193739" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-193743", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193743" } ] }, { "id": "R-SSC-389622", "name": "phytanate + CoA-SH + ATP => phytanoyl-CoA + AMP + pyrophosphate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "peroxisomal matrix", "input_participant_list": [ "R-ALL-389573", "R-ALL-389596" ], "output_participant_list": [ "R-ALL-389593", "R-ALL-389615" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-389622", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389622" } ] }, { "id": "R-SSC-389632", "name": "pristanate + CoA-SH + ATP => pristanoyl-CoA + AMP + pyrophosphate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "peroxisomal matrix", "input_participant_list": [ "R-ALL-6811612" ], "output_participant_list": [ "R-ALL-389569" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-389632", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389632" } ] }, { "id": "R-SSC-6799350", "name": "Exocytosis of specific granule membrane proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane, specific granule membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6799350", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799350" } ] }, { "id": "R-SSC-9033235", "name": "Cargo of PEX5S,L translocates from the cytosol to the peroxisomal matrix", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "peroxisomal membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9033235", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033235" } ] }, { "id": "R-SSC-9033236", "name": "PEX5S,L:Cargo binds PEX13:PEX14:PEX2:PEX10:PEX12 (Docking and Translocation Module)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "peroxisomal membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9033236", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033236" } ] }, { "id": "R-SSC-9734535", "name": "SLC27A2 ligates CoA to bempedoic acid to form ETC-1002-CoA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-9734538" ], "output_participant_list": [ "R-ALL-111294", "R-ALL-9734541" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9734535", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9734535" } ] }, { "id": "R-SSC-9914143", "name": "SLC27A2-mediated ligation of peroxisomal fatty acid and CoASH", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "peroxisomal matrix", "input_participant_list": [ "R-ALL-9914044" ], "output_participant_list": [ "R-ALL-9914131" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9914143", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9914143" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-111294", "participant_name": "PPi [cytosol]", "crossref": [ { "id": "33019", "database": "ChEBI", "url": "" }, { "id": "C00013", "database": "COMPOUND", "url": "" }, { "id": "2466-09-3", "database": "CAS", "url": "" }, { "id": "1023", "database": "PubChem Compound", "url": "" }, { "id": "ZINC000006827695", "database": "ZINC", "url": "" }, { "id": "2466", "database": "CAS", "url": "" }, { "id": "4097574", "database": "PubChem Compound", "url": "" }, { "id": "PPI", "database": "AraCyc", "url": "" } ] }, { "participant_id": "R-ALL-192013", "participant_name": "THCA [cytosol]", "crossref": [ { "id": "18402", "database": "ChEBI", "url": "" }, { "id": "C04722", "database": "COMPOUND", "url": "" }, { "id": "ZINC000040164281", "database": "ZINC", "url": "" }, { "id": "ZINC000040164282", "database": "ZINC", "url": "" }, { "id": "HMDB0000601", "database": "HMDB Metabolite", "url": "" } ] }, { "participant_id": "R-ALL-192096", "participant_name": "25(R) THCA-CoA [cytosol]", "crossref": [ { "id": "HMDB0060305", "database": "HMDB Metabolite", "url": "" }, { "id": "C15613", "database": "COMPOUND", "url": "" }, { "id": "37642", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-193457", "participant_name": "25(R) DHCA-CoA [cytosol]", "crossref": [ { "id": "15494", "database": "ChEBI", "url": "" }, { "id": "C04644", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-193505", "participant_name": "DHCA [cytosol]", "crossref": [ { "id": "16577", "database": "ChEBI", "url": "" }, { "id": "C04554", "database": "COMPOUND", "url": "" }, { "id": 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"length": 997, "header": "tr|A0A5G2QQ54-1|A0A5G2QQ54_PIG Isoform 1 of Anoctamin OS=Sus scrofa OX=9823 GN=VWF PE=3 SV=2 CANONICAL=A0A5G2QQ54-1" }, "locus": { "chromosome": "5", "start_pos": 65001817, "end_pos": 64660482, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077273.3", "url": "https://www.ensembl.org/id/ENSSSCT00000077273.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064199.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064199.2" } ] } }, { "isoform_ac": "F1SL12-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ54/entry#F1SL12-1", "sequence": { "sequence": "MDFDIPLLPGSPRRLSPRMVVRGGQGPKHGQQYLKVPGPRAQGLQGSSPRASGQPPGGGSSPNSSVINNYLDASEQVSSEARLSRMHFHDNQRKVDYVLAYHYRKRGAHPGHGSPGHSLAIVSNGETGKDPHAGAPSDIELGPLDGLEDQRKEQREEFEHNLMEAGLELEKDLESKSQGSVFVRIHAPWQVLAREAEFLKIKVPTKKMYEIKSEGSIAKTFNKILQKLSSPLKPRVPEHSNSRMKNLSYPFSREKMYLYNIQDKDTFFDNATRSRIVHEILKRTTCSRANNSMGINSLIANNVYEAAYPLHDGEYDGAGDDMNDRKLLYQEWARYGVFYKFQPIDLIRKYFGEKIGLYFAWLGLYTSFLIPSSIIGVIVFLYGCATIEEDIPSKEMCDQQNAFTMCPLCDKSCDYWNLSSACGTARASHLFDNPATVFFSIFMALWATMFLENWKRLQMRLGYFWDLTGIEEEEEHSRPEYETKVREKMLKESDKSVVQKLGTHSTESEDEDDEDKLTWKDRFPGYLMNFASILFMIALTFSIVFGVIVYRITTAAALSLNKATRSNVRVTVTATAVIINLVVILILDEIYGAVAKWLTKIEVPKTEQTFEERLILKAFLLKFVNAYSPIFYVAFFKGRFVGRPGSYVYVFDGYRMEECAPGGCLMELCIQLSIIMLGKQLIQNNIFEIGVPKLKKLFRKLKDETEGETDSTHSKHPEQWDLDYSLAYTGLTPEYMEMIIQFGFVTLFVASFPLAPVFALLNNVIEVRLDAKKFVTELRRPDAVRTKDIGIWFDILSGIGKFSVIINAFVIAVTSDFIPRLVYQYAYSHNGTLHGFVNHTLSFFNISQLKEGTQPENSQFDLEVQFCRFKDYREPPWAPNPYEFSKQYWSVLSARLAFVIIFQNLVMFLSVLVDWMIPDIPTDISDQIKREKSLFVDFFLKEEHEKLRLMEEPARRSPGTGRRSRRSPAASPAPSGRSQPGSSMSSGSHQTNV", "length": 993, "header": "tr|F1SL12-1|F1SL12_PIG Computationally mapped isoform of Anoctamin OS=Sus scrofa OX=9823 GN=VWF PE=3 SV=4 CANONICAL=A0A5G2QQ54-1" }, "locus": { "chromosome": "5", "start_pos": 65001817, "end_pos": 64666902, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000776.6", "url": "https://www.ensembl.org/id/ENSSSCT00000000776.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000760.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000760.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3, "start_aa": "Thr", "end_pos": 3, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ54" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ54" } ], "pmid": "" }, { "name": "non-motile cilium", "id": "GO:0097730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097730", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ54" } ], "pmid": "" }, { "name": "presynaptic membrane", "id": "GO:0042734", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042734", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ54" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": 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"https://www.uniprot.org/uniprotkb/F1RZU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZU4-1", "url": "https://www.uniprot.org/uniprotkb/F1RZU4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GM41", "url": "https://www.uniprot.org/uniprotkb/K7GM41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GM41-1", "url": "https://www.uniprot.org/uniprotkb/K7GM41-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGAVASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCLGRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQVRGGGSGQPFLPRRARARLGGGGKKLGRDGEAHPVHLFHHPPPLLGVVPLQV", "length": 401, "header": "tr|A0A5G2QSY3-1|A0A5G2QSY3_PIG Isoform 1 of N-acylglucosamine 2-epimerase OS=Sus scrofa OX=9823 GN=RENBP PE=3 SV=1 CANONICAL=A0A5G2QSY3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY3/entry#A0A5G2QSY3-1", "sequence": { "sequence": "MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGAVASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCLGRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQVRGGGSGQPFLPRRARARLGGGGKKLGRDGEAHPVHLFHHPPPLLGVVPLQV", "length": 401, "header": "tr|A0A5G2QSY3-1|A0A5G2QSY3_PIG Isoform 1 of N-acylglucosamine 2-epimerase OS=Sus scrofa OX=9823 GN=RENBP PE=3 SV=1 CANONICAL=A0A5G2QSY3-1" }, "locus": { "chromosome": "X", "start_pos": 124670212, "end_pos": 124666274, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075693.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075693.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067942.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067942.1" } ] } }, { "isoform_ac": "A0A5G2R324-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY3/entry#A0A5G2R324-1", "sequence": { "sequence": "MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGAVASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCLGRHQNPGDGAGSVGKASLHPPPRSTRWRRGDVAPVPVRQLHESDWHGLGGPAVPRGAQSSSHCGEERKRVSGLSRALSPCLGKDPLPASPRVLTRPRAGSWLVPAPPQQPER", "length": 352, "header": "tr|A0A5G2R324-1|A0A5G2R324_PIG Computationally mapped isoform of N-acylglucosamine 2-epimerase OS=Sus scrofa OX=9823 GN=RENBP PE=3 SV=1 CANONICAL=A0A5G2QSY3-1" }, "locus": { "chromosome": "X", "start_pos": 124670212, "end_pos": 124667096, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085986.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085986.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068597.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068597.1" } ] } }, { "isoform_ac": "A0A900PNS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY3/entry#A0A900PNS1-1", "sequence": { "sequence": "MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGAVASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCLGRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEYGEWFGYLNREGKVALTIKGGPFKGEWEIRQGFRGSERSAAPGPPNPPSCLCAGCFHVPRCLAMCEEMLSALLSRLA", "length": 431, "header": "tr|A0A900PNS1-1|A0A5G2QSY3_PIG Computationally mapped isoform of N-acylglucosamine 2-epimerase OS=Sus scrofa OX=9823 GN=RENBP PE=3 SV=1 CANONICAL=A0A5G2QSY3-1" }, "locus": { "chromosome": "X", "start_pos": 124670212, "end_pos": 124663033, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035242.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035242.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029971.3", "url": "https://www.ensembl.org/id/ENSSSCP00000029971.3" } ] } }, { "isoform_ac": "F1RZU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY3/entry#F1RZU4-1", "sequence": { "sequence": "MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQPHRDPGHRGGSQPKRRAPSVRPSREKRQLVLKRPKLPSGFQGRVFKSQSEAVDMMDQIVHWVREDPSGLGRPQLPGAVASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCLGRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEYGEWFGYLNREGKVALTIKGGPFKGCFHVPRCLAMCEEMLSALLSRLA", "length": 450, "header": "tr|F1RZU4-1|A0A5G2QSY3_PIG Computationally mapped isoform of N-acylglucosamine 2-epimerase OS=Sus scrofa OX=9823 GN=RENBP PE=3 SV=2 CANONICAL=A0A5G2QSY3-1" }, "locus": { "chromosome": "X", "start_pos": 124670212, "end_pos": 124663033, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013984.6", "url": "https://www.ensembl.org/id/ENSSSCT00000013984.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013601.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013601.3" } ] } }, { "isoform_ac": "K7GM41-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY3/entry#K7GM41-1", "sequence": { "sequence": "MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGAVASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCLGRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQCYLGADSHPPAKKGKGKALAFTFVRDSLRSTDCGAV", "length": 385, "header": "tr|K7GM41-1|A0A5G2QSY3_PIG Computationally mapped isoform of N-acylglucosamine 2-epimerase OS=Sus scrofa OX=9823 GN=RENBP PE=3 SV=2 CANONICAL=A0A5G2QSY3-1" }, "locus": { "chromosome": "X", "start_pos": 124670212, "end_pos": 124663368, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035394.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035394.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028929.2", "url": "https://www.ensembl.org/id/ENSSSCP00000028929.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RZU4", "url": "https://www.uniprot.org/uniprotkb/F1RZU4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-446210", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446210", "resource": "Reactome", "description": "Synthesis of UDP-N-acetyl-glucosamine" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "N-acylglucosamine 2-epimerase activity", "id": "GO:0050121", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050121", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY3" } ], "pmid": "" }, { "name": "peptidase inhibitor activity", "id": "GO:0030414", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030414", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY3" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY3" } ], "pmid": "" }, { "name": "N-acetylneuraminate catabolic process", "id": "GO:0019262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019262", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19033", "name": "", "equation": "an N-acyl-D-glucosamine = an N-acyl-D-mannosamine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19033", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19033" } ] }, { "id": "R-SSC-6803761", "name": "RENBP isomerises ManNAc, ManNGc to GlcNAc, GlcNGc", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6803761", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6803761" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSY3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 401, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSY3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSY3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 228, "end_pos": 230 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A5G2QWB4-1", "uniprot_ac": "A0A5G2QWB4", "uniprot_id": "A0A5G2QWB4_PIG", "mass": { "chemical_mass": 86769.0, "monoisotopic_mass": 86769.0 }, "refseq": {}, "gene_names": [ { "name": "SLC9A2", "type": "recommended", "evidence": [ { "id": "A0A5G2QWB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4" } ] } ], "protein_names": [ { "name": "Sodium/hydrogen exchanger", "type": "recommended", "evidence": [ { "id": "A0A5G2QWB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC9A2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4", "locus": { "chromosome": "3", "start_pos": 51535798, "end_pos": 51623057, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008153", "url": "https://www.ensembl.org/id/ENSSSCG00000008153" } ] } } ], "crossref": [ { "id": "A0A5G2QWB4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWB4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008153", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008153", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001953", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001953", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004709", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004709", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032103", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032103", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "INMFRTI", "url": "https://omabrowser.org/oma/group/INMFRTI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10110", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10110", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10110:SF89", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10110:SF89", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00999", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00999", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16644", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16644", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-425986", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-425986", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QWB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STH5", "url": "https://www.uniprot.org/uniprotkb/F1STH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STH5-1", "url": "https://www.uniprot.org/uniprotkb/F1STH5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTSSSPPSPASVVAPGTTPFEESRLPVFTLDYPHVQIPFEITLWILLASLAKIGFHLYHKLPTIVPESCLLIMVGLLLGGIIFGVDEKSPPAMKTDVFFLYLLPPIVLDAGYFMPTRPFFENIGTIFWYAVVGTLWNSIGIGVSLFGICQIEAFGLSDITLLENLLFGSLISAVDPVAVLAVFENIHVNEQLYILVFGESLLNDAVTVVLYNLFKSFCQMKTIETIDVFAGITNFFVVGIGGVMIGIFLGFIAAFTTRFTHNVRVIEPLFVFLYSYLSYITAEMFHLSGIMAITACAMTMNKYVEENVSQKSYTTIKYFMKMLSSVSETLIFIFMGVSTVGKNHEWHWAFVCFTLAFCLIWRALGVFVLTQVINWFRTIPLTFKDQFIIAYGGLRGAICFALVFLLPSSVFPRKKLFITAAIVVIFFTVFILGITIRPLVEFLDVKRSNKKQQAVSEEIHCRFFDHVKTGIEDVCGHWGHNFWRDKFKKFDDKYLRKLLIRENQPKSSIVSLYKKLEIKHAIEMAETGMISTVPSFASLNDCREEKIRKLTPGEMDEIREILSRNLYQIRQRTLSYNRHNLTTDTNERQAKEILIRRRHSLRESIRKDSSLNREHRASTTTSRYLSLPKNTKLPEKLQKKKNISSAGGNSSDSDPDMGTTVLNLQPRARRFLPEQFSKKAPQAYKMEWKNEVDVESGPGQPLTSLAAHSKEGGLKSPGMLCQPLLSKGQSGCVRGDSVNEGVRPKPPPRLVRRASEPGNQKGRPGSEKP", "length": 770, "header": "tr|A0A5G2QWB4-1|A0A5G2QWB4_PIG Isoform 1 of Sodium/hydrogen exchanger OS=Sus scrofa OX=9823 GN=SLC9A2 PE=3 SV=1 CANONICAL=A0A5G2QWB4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4/entry#A0A5G2QWB4-1", "sequence": { "sequence": "MGTSSSPPSPASVVAPGTTPFEESRLPVFTLDYPHVQIPFEITLWILLASLAKIGFHLYHKLPTIVPESCLLIMVGLLLGGIIFGVDEKSPPAMKTDVFFLYLLPPIVLDAGYFMPTRPFFENIGTIFWYAVVGTLWNSIGIGVSLFGICQIEAFGLSDITLLENLLFGSLISAVDPVAVLAVFENIHVNEQLYILVFGESLLNDAVTVVLYNLFKSFCQMKTIETIDVFAGITNFFVVGIGGVMIGIFLGFIAAFTTRFTHNVRVIEPLFVFLYSYLSYITAEMFHLSGIMAITACAMTMNKYVEENVSQKSYTTIKYFMKMLSSVSETLIFIFMGVSTVGKNHEWHWAFVCFTLAFCLIWRALGVFVLTQVINWFRTIPLTFKDQFIIAYGGLRGAICFALVFLLPSSVFPRKKLFITAAIVVIFFTVFILGITIRPLVEFLDVKRSNKKQQAVSEEIHCRFFDHVKTGIEDVCGHWGHNFWRDKFKKFDDKYLRKLLIRENQPKSSIVSLYKKLEIKHAIEMAETGMISTVPSFASLNDCREEKIRKLTPGEMDEIREILSRNLYQIRQRTLSYNRHNLTTDTNERQAKEILIRRRHSLRESIRKDSSLNREHRASTTTSRYLSLPKNTKLPEKLQKKKNISSAGGNSSDSDPDMGTTVLNLQPRARRFLPEQFSKKAPQAYKMEWKNEVDVESGPGQPLTSLAAHSKEGGLKSPGMLCQPLLSKGQSGCVRGDSVNEGVRPKPPPRLVRRASEPGNQKGRPGSEKP", "length": 770, "header": "tr|A0A5G2QWB4-1|A0A5G2QWB4_PIG Isoform 1 of Sodium/hydrogen exchanger OS=Sus scrofa OX=9823 GN=SLC9A2 PE=3 SV=1 CANONICAL=A0A5G2QWB4-1" }, "locus": { "chromosome": "3", "start_pos": 51622638, "end_pos": 51535968, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069546.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069546.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068445.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068445.1" } ] } }, { "isoform_ac": "F1STH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4/entry#F1STH5-1", "sequence": { "sequence": "MEPAGTRRSRRAPSLLLLLLPPLLLQVAGPAGALAETLLDAPQAMGTSSSPPSPASVVAPGTTPFEESRLPVFTLDYPHVQIPFEITLWILLASLAKIGFHLYHKLPTIVPESCLLIMVGLLLGGIIFGVDEKSPPAMKTDVFFLYLLPPIVLDAGYFMPTRPFFENIGTIFWYAVVGTLWNSIGIGVSLFGICQIEAFGLSDITLLENLLFGSLISAVDPVAVLAVFENIHVNEQLYILVFGESLLNDAVTVVLYNLFKSFCQMKTIETIDVFAGITNFFVVGIGGVMIGIFLGFIAAFTTRFTHNVRVIEPLFVFLYSYLSYITAEMFHLSGIMAITACAMTMNKYVEENVSQKSYTTIKYFMKMLSSVSETLIFIFMGVSTVGKNHEWHWAFVCFTLAFCLIWRALGVFVLTQVINWFRTIPLTFKDQFIIAYGGLRGAICFALVFLLPSSVFPRKKLFITAAIVVIFFTVFILGITIRPLVEFLDVKRSNKKQQAVSEEIHCRFFDHVKTGIEDVCGHWGHNFWRDKFKKFDDKYLRKLLIRENQPKSSIVSLYKKLEIKHAIEMAETGMISTVPSFASLNDCREEKIRKLTPGEMDEIREILSRNLYQIRQRTLSYNRHNLTTDTNERQAKEILIRRRHSLRESIRKDSSLNREHRASTTTSRYLSLPKNTKLPEKLQKKKNISSAGGNSSDSDPDMGTTVLNLQPRARRFLPEQFSKKAPQAYKMEWKNEVDVESGPGQPLTSLAAHSKEGGLKSPGMLCQPLLSKGQSGCVRGDSVNEGVRPKPPPRLVRRASEPGNQKGRPGSEKP", "length": 814, "header": "tr|F1STH5-1|A0A5G2QWB4_PIG Computationally mapped isoform of Sodium/hydrogen exchanger OS=Sus scrofa OX=9823 GN=SLC9A2 PE=3 SV=2 CANONICAL=A0A5G2QWB4-1" }, "locus": { "chromosome": "3", "start_pos": 51622770, "end_pos": 51535968, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008930.3", "url": "https://www.ensembl.org/id/ENSSSCT00000008930.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008704.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008704.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STH5", "url": "https://www.uniprot.org/uniprotkb/F1STH5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-425986", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-425986", "resource": "Reactome", "description": "Sodium/Proton exchangers" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QMD8-1", "protein_name": "Sodium/hydrogen exchanger", "gene_name": "Slc9a2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGPSGTECSVRAPSSRLLLLLLFLQVAVPAGALAETLLDAPRARGASSNPPSPASVVAPGTTPFEESRLPVFTLDYPHVQIPFEITLWILLASLAKIGFHLYHKLPTIVPESCLLIMVGLLLGGIIFGVDEKSPPAMKTDVFFLYLLPPIVLDAGYFMPTRPFFENFGTIFWYAVVGTLWNSIGIGVSLFGICQIEAFGLSDITLLQNLLFGSLISAVDPVAVLAVFENIHVNEQLYILVFGESLLNDAVTVVLYNLFKSFCQMKTIHTVDVFAGIANFFVVGIGGVLIGILLGFIAAFTTRFTHNIRVIEPLFVFLYSYLSYITAEMFHLSGIMAITACAMTMNKYVEENVSQKSYTTIKYFMKMLSSVSETLIFIFMGVSTVGKNHEWNWAFVCFTLAFCLIWRALGVFVLTQVINWFRTIPLTFKDQFIIAYGGLRGAICFALVFLLPASVFPRKKLFITAAIVVIFFTVFILGITIRPLVEFLDVKRSNKKQQAVSEEIHCRFFDHVKTGIEDVCGHWGHNFWRDKFKKFDDRYLRKLLIRENQPKSSIVSLYKKLEIKHAIEMAETGMISTVPSFASLNDCREEKLRKLTPVEMDEIREILSRNLYQIRQRTLSYNRHNLTADTSERQAKEILIRRRHSLRESLRKDNSLNRERRASTSTSRYLSLPKNTKLPEQLQRKKISNEDGNSSDSDTDNGTTVLNLQPRSRRFLPDQFSKKASQSYKMEWKNEVDMDGSARVQPSTPPVPRSKEGGTQTPGVLRQPLLSKDQQFGRGRENSLTEDVPPKPPPRLVRRASEPGNRKSRIGNEKP", "length": 814 }, "evidence": [ { "id": "A0A5G2QWB4", "url": "https://omabrowser.org/oma/group/A0A5G2QWB4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BB11-1", "protein_name": "Sodium/hydrogen exchanger", "gene_name": "SLC9A2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPAGPGLRGQAPLLLLLLLLQAAGPAGARAETLLDAPRARGTSSIPPSPASVVAPGTTPFEESRLPVFTLDYPHVQIPFEITLWILLASLAKIGFHLYHKLPTIVPESCLLIMVGLLLGGIIFGVDEKSPPAMKTDVFFLYLLPPIVLDAGYFMPTRPFFENIGTIFWYAVVGTLWNSIGIGVSLFGICQIEAFGLSDITLLQNLLFGSLISAVDPVAVLAVFENIHVNEQLYILVFGESLLNDAVTVVLYNLFKSFCQMKTIETVDVFAGIANFFVVGIGGVLIGIFLGFIAAFTTRFTHNIRVIEPLFVFLYSYLSYITAEMFHLSGIMAITACAMTMNKYVEENVSQKSYTTIKYFMKMLSSVSETLIFIFMGVSTVGKNHEWNWAFVCFTLAFCLIWRALGVFVLTQVINWFRTIPLTFKDQFIIAYGGLRGAICFALVFLLPSSVFPRKKLFITAAIVVIFFTVFILGITIRPLVEFLDVKRSNKKQQAVSEEIHCRFFDHVKTGIEDVCGHWGHNFWRDKFKKFDDKYLRKLLIRENQPKSSIVSLYKKLEIKHAIEMAETGMISTVPSFASLNDCREEKVRKLTPGEMDEIREILSRNLYQIRQRTLSYNRHNLTADTSERQAKEILIRRRHSLRESIRKDSSLNREHRASTSTSRYLSLPKNTKLPEKLQKKKNVSNAGGNSSDSDLEAGTTVLNLQPRARRFLPEQFSKKAPQAYKMEWKNEVDMDSRQDQPRSSPAAHSKEGSPQTPGVLCQPLLSKGHFGSVRGDRVHEGIQPKPPPRLVRRASEPGNRKGRFGSEKP", "length": 810 }, "evidence": [ { "id": "A0A5G2QWB4", "url": "https://omabrowser.org/oma/group/A0A5G2QWB4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BV56-1", "protein_name": "Sodium/hydrogen exchanger", "gene_name": "SLC9A2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGGGGGPPRRGAPRRLLAVLAVLAAAAAEARGTAGSQAPGAAAMGTGTPPSPSGTAFEETRLHVFTLDYPHVQIPFEITLWILLASLAKIGFHLYHKLPSIVPESCLLILVGLLLGGIIFGAEEKSPPVMNSDVFFLYLLPPIVLDAGYFMPTRLFFENFGTIFWYAVVGTLWNAIGIGISLFGICQISAFGLTDITLLQNLLFGSLISAVDPVAVLAVFENIHVNEQLYILVFGESLLNDAITVVLYNLFKSFCQMRTIQVIDIFAGIANFFIVGIGGVLIGILLGFVAAFTTRFTHKIRVIEPLFVFLYSYLSYITAEMFHLSGIMAITACAMTMNKYVEENVSQKSYTTIKYFMKMLSSVSETLIFIFMGVSTVGKNHEWNWAFVSFTLLFCLIWRALGVFVLTQIINVFRTIPLTFKDQFIIAYGGLRGAICFSLVFLLPPSVFPRKKLFITAVIVVIFFTVFIQGITIRPLVEFLDVKRSNKKQPAVSEEIYNRFFDHVKTGIEDVCGHWGHNFWRDKFKKFDNKYLRRLLIRENQPKSSIVSLYKKLEIKHAIEMAESGMISKVPSSVSLSEYHEGKIKPLSPTEMENMREILTKNLYQIRHRTMSYNRHSLAADANEKQAKEILIRRRHSLRESLRKTNSLSRERPAAANTKRFLSLPKNTKLPEKLRVRNKTSSRVGDSSDSEMDATTTVLNLRPRAGKILREQRLRQQRPPSEFSMEWKNEVDGSQNGQGEQQEPGSLPQPSIGFRQPLLTRPRFGTLSREDLTADHGLARPVPPPRLVRQASQGERQRSKPENQPY", "length": 806 }, "evidence": [ { "id": "A0A5G2QWB4", "url": "https://omabrowser.org/oma/group/A0A5G2QWB4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P48763-1", "protein_name": "Sodium/hydrogen exchanger 2", "gene_name": "Slc9a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGPSGTAHRMRAPLSWLLLLLLSLQVAVPAGALAETLLDAPGARGASSNPPSPASVVAPGTTPFEESRLPVFTLDYPHVQIPFEITLWILLASLAKIGFHLYHKLPTIVPESCLLIMVGLLLGGIIFGVDEKSPPAMKTDVFFLYLLPPIVLDAGYFMPTRPFFENLGTIFWYAVVGTLWNSIGIGLSLFGICQIEAFGLSDITLLQNLLFGSLISAVDPVAVLAVFENIHVNEQLYILVFGESLLNDAVTVVLYNLFKSFCQMKTIQTVDVFAGIANFFVVGIGGVLIGILLGFIAAFTTRFTHNIRVIEPLFVFLYSYLSYITAEMFHLSGIMAITACAMTMNKYVEENVSQKSYTTIKYFMKMLSSVSETLIFIFMGVSTVGKNHEWNWAFVCFTLAFCLIWRALGVFVLTQVINWFRTIPLTFKDQFIIAYGGLRGAICFALVFLLPATVFPRKKLFITAAIVVIFFTVFILGITIRPLVEFLDVKRSNKKQQAVSEEIHCRFFDHVKTGIEDVCGHWGHNFWRDKFKKFDDKYLRKLLIRENQPKSSIVSLYKKLEIKHAIEMAETGMISTVPSFASLNDCREEKIRKLTPGEMDEIREILSRNLYQIRQRTLSYNRHNLTADTSERQAKEILIRRRHSLRESLRKDNSLNRERRASTSTSRYLSLPKNTKLPEKLQKKNKVSNADGNSSDSDMDGTTVLNLQPRARRFLPDQFSKKASPAYKMEWKNEVDVGSARAPPSVTPAPRSKEGGTQTPGVLRQPLLSKDQRFGRGREDSLTEDVPPKPPPRLVRRASEPGNRKGRLGNEKP", "length": 813 }, "evidence": [ { "id": "A0A5G2QWB4", "url": "https://omabrowser.org/oma/group/A0A5G2QWB4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3ZAS0-1", "protein_name": "Sodium/hydrogen exchanger 2", "gene_name": "Slc9a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGPRGTAHSVRAPLSWLLLLLLSLQVAVPAGALAETLLDAPRARGASSNPPSPASVVAPGTTPFEESRLPVFTLDYPHVQIPFEITLWILLASLAKIGFHLYHKLPTIVPESCLLIMVGLLLGGIIFGVDEKSPPAMKTDVFFLYLLPPIVLDAGYFMPTRPFFENFGTIFWYAVVGTLWNSIGIGVSLFGICQIEAFGLSDITLLQNLLFGSLISAVDPVAVLAVFENIHVNEQLYILVFGESLLNDAVTVVLYNLFKSFCQMKTIQTVDVFAGIANFFVVGIGGVLIGILLGFIAAFTTRFTHNIRVIEPLFVFLYSYLSYITAEMFHLSGIMAITACAMTMNKYVEENVSQKSYTTIKYFMKMLSSVSETLIFIFMGVSTVGKNHEWNWAFVCFTLAFCLIWRALGVFVLTQVINWFRTIPLTFKDQFIIAYGGLRGAICFALVFLLPATVFPRKKLFITAAIVVIFFTVFILGITIRPLVEFLDVKRSNKKQQAVSEEIHCRFFDHVKTGIEDVCGHWGHNFWRDKFKKFDDKYLRKLLIRENQPKSSIVSLYKKLEIKHAIEMAETGMISTVPSFASLNDCREEKIRKLTPGEMDEIREILSRNLYQIRQRTLSYNRHNLTADTSERQAKEILIRRRHSLRESLRKDNSSNRERRASTSTSRYLSLPKNTKLPEKLQKKKKVSNADGNSSDSDPDVGTTVLNLQPRTRRFLPDQFSKKASQAYKMEWKNEVDVGSVRVPPSVSPAPRSKDGGTQTPGLLRQPLLSKDQRFGRGREDSLTEDVPPKPPPRLVRRASEPGNRKGRLGNEKP", "length": 814 }, "evidence": [ { "id": "A0A5G2QWB4", "url": "https://omabrowser.org/oma/group/A0A5G2QWB4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UBY0-1", "protein_name": "Sodium/hydrogen exchanger 2", "gene_name": "SLC9A2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPLGNWRSLRAPLPPMLLLLLLQVAGPVGALAETLLNAPRAMGTSSSPPSPASVVAPGTTLFEESRLPVFTLDYPHVQIPFEITLWILLASLAKIGFHLYHKLPTIVPESCLLIMVGLLLGGIIFGVDEKSPPAMKTDVFFLYLLPPIVLDAGYFMPTRPFFENIGTIFWYAVVGTLWNSIGIGVSLFGICQIEAFGLSDITLLQNLLFGSLISAVDPVAVLAVFENIHVNEQLYILVFGESLLNDAVTVVLYNLFKSFCQMKTIETIDVFAGIANFFVVGIGGVLIGIFLGFIAAFTTRFTHNIRVIEPLFVFLYSYLSYITAEMFHLSGIMAITACAMTMNKYVEENVSQKSYTTIKYFMKMLSSVSETLIFIFMGVSTVGKNHEWNWAFVCFTLAFCLMWRALGVFVLTQVINRFRTIPLTFKDQFIIAYGGLRGAICFALVFLLPAAVFPRKKLFITAAIVVIFFTVFILGITIRPLVEFLDVKRSNKKQQAVSEEIYCRLFDHVKTGIEDVCGHWGHNFWRDKFKKFDDKYLRKLLIRENQPKSSIVSLYKKLEIKHAIEMAETGMISTVPTFASLNDCREEKIRKVTSSETDEIRELLSRNLYQIRQRTLSYNRHSLTADTSERQAKEILIRRRHSLRESIRKDSSLNREHRASTSTSRYLSLPKNTKLPEKLQKRRTISIADGNSSDSDADAGTTVLNLQPRARRFLPEQFSKKSPQSYKMEWKNEVDVDSGRDMPSTPPTPHSREKGTQTSGLLQQPLLSKDQSGSEREDSLTEGIPPKPPPRLVWRASEPGSRKARFGSEKP", "length": 812 }, "evidence": [ { "id": "A0A5G2QWB4", "url": "https://omabrowser.org/oma/group/A0A5G2QWB4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "sodium:proton antiporter activity", "id": "GO:0015385", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015385", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4" } ], "pmid": "" }, { "name": "potassium:proton antiporter activity", "id": "GO:0015386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015386", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4" } ], "pmid": "" }, { "name": "cell junction", "id": "GO:0030054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030054", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "regulation of pH", "id": "GO:0006885", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006885", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4" } ], "pmid": "" }, { "name": "epithelial cell differentiation", "id": "GO:0030855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030855", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4" } ], "pmid": "" }, { "name": "regulation of intracellular pH", "id": "GO:0051453", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051453", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4" } ], "pmid": "" }, { "name": "potassium ion transmembrane transport", "id": "GO:0071805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071805", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4" } ], "pmid": "" }, { "name": "sodium ion import across plasma membrane", "id": "GO:0098719", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098719", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], 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Catalyzes the second step, that is the pyridoxal 5'-phosphate-dependent transamination of 3-phosphohydroxypyruvate and L-glutamate to O-phosphoserine (OPS) and alpha-ketoglutarate. Acts as an inhibitor of ferroptosis in response to interferon-gamma (IFNG) by promoting GPX4 stability: following phosphorylation by CAMK2A, PSAT1 interacts with GPX4 and provides 2-oxoglutarate to EGLN3, leading to GPX4 hydroxylation and stability.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUN4#function" }, { "database": "UniProtKB", "id": "ARBA00094359", "url": "https://www.uniprot.org/uniprotkb/ARBA00094359#function" }, { "database": "UniProtKB", "id": "F1SIJ9", "url": "https://www.uniprot.org/uniprotkb/F1SIJ9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUN4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PSAT1", "url": 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"https://www.uniprot.org/uniprotkb/F1SIJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIJ9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSLMQVVNFGAGPAKLPRSVLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLVRELLSIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWSAKAAEEAKKFGTVNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLYNTPPCFSVYVMGLVLEWIKNNGGAAAMEKLSCIKSQMIYDIIDNSQGFYVCPVEPQRSKMNIPFRIGNTKGDDALEKRFLDKALELKMISLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKNFLEMHQL", "length": 369, "header": "tr|A0A5G2QUN4-1|A0A5G2QUN4_PIG Isoform 1 of Phosphoserine aminotransferase OS=Sus scrofa OX=9823 GN=PSAT1 PE=1 SV=1 CANONICAL=A0A5G2QUN4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VV92-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUN4/entry#A0A4X1VV92-1", "sequence": { "sequence": "MDSLMQVVNFGAGPAKLPRSVLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLVRELLSIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWSAKAAEEAKKFGTVNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLYNTPPCFSVYVMGLVLEWIKNNGGAAAMEKLSCIKSQMIYDIIDNSQGFYVSVGGIRASLYNAVTIEDVQKLAAFMKNFLEMHQL", "length": 324, "header": "tr|A0A4X1VV92-1|A0A4X1VV92_PIG Computationally mapped isoform of phosphoserine transaminase OS=Sus scrofa OX=9823 GN=PSAT1 PE=1 SV=1 CANONICAL=A0A5G2QUN4-1" }, "locus": { "chromosome": "1", "start_pos": 231171358, "end_pos": 231142771, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069033.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069033.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072229.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072229.1" } ] } }, { "isoform_ac": "A0A5G2QUN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUN4/entry#A0A5G2QUN4-1", "sequence": { "sequence": "MDSLMQVVNFGAGPAKLPRSVLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLVRELLSIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWSAKAAEEAKKFGTVNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLYNTPPCFSVYVMGLVLEWIKNNGGAAAMEKLSCIKSQMIYDIIDNSQGFYVCPVEPQRSKMNIPFRIGNTKGDDALEKRFLDKALELKMISLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKNFLEMHQL", "length": 369, "header": "tr|A0A5G2QUN4-1|A0A5G2QUN4_PIG Isoform 1 of Phosphoserine aminotransferase OS=Sus scrofa OX=9823 GN=PSAT1 PE=1 SV=1 CANONICAL=A0A5G2QUN4-1" }, "locus": { "chromosome": "1", "start_pos": 231171358, "end_pos": 231142771, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067387.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067387.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068666.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068666.1" } ] } }, { "isoform_ac": "F1SIJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUN4/entry#F1SIJ9-1", "sequence": { "sequence": "MRHSCFYNYLLLNRVEISLGQSLLCVVVLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLVRELLSIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWSAKAAEEAKKFGTVNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLYNTPPCFSVYVMGLVLEWIKNNGGAAAMEKLSCIKSQMIYDIIDNSQGFYMSSGAPDRSKMNIPFRIGNTKGDDALEKRFLDKALELKMISLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKNFLEMHQL", "length": 376, "header": "tr|F1SIJ9-1|A0A5G2QUN4_PIG Computationally mapped isoform of Phosphoserine aminotransferase OS=Sus scrofa OX=9823 GN=PSAT1 PE=1 SV=4 CANONICAL=A0A5G2QUN4-1" }, "locus": { "chromosome": "1", "start_pos": 231171358, "end_pos": 231143836, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005824.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005824.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005680.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005680.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIJ9", "url": "https://www.uniprot.org/uniprotkb/F1SIJ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-977347", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977347", "resource": "Reactome", "description": "Serine metabolism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUN4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUN4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "pyridoxal phosphate binding", "id": "GO:0030170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030170", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUN4" } ], "pmid": "" }, { "name": "O-phospho-L-serine:2-oxoglutarate aminotransferase activity", "id": "GO:0004648", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004648", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUN4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "L-serine biosynthetic process", "id": "GO:0006564", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006564", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUN4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "14329", "name": "", "equation": "O-phospho-L-serine + 2-oxoglutarate = 3-phosphooxypyruvate + L-glutamate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "14329", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14329" } ] }, { "id": "R-SSC-977333", "name": "PXLP-K200-PSAT1 dimer transfers amino group from L-Glu to 3POPA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-977329" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-977333", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977333" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-977329", "participant_name": "3POPA [cytosol]", "crossref": [ { "id": "18110", "database": "ChEBI", "url": "" }, { "id": "5460375", "database": "PubChem Compound", "url": "" }, { "id": "3-P-HYDROXYPYRUVATE", "database": "AraCyc", "url": "" }, { "id": "C03232", "database": "KEGG Gene", "url": "" }, { "id": "3913-50-6", "database": "CAS", "url": "" }, { "id": "ZINC000003869279", "database": "ZINC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUN4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 369, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUN4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUN4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QUN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUN4" }, { "id": "PF00266", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00266" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aminotransferase class V", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 356, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 154, "end_pos": 156 }, { "start_pos": 236, "end_pos": 238 }, { "start_pos": 54, "end_pos": 56 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A5G2QUP4-1", "uniprot_ac": "A0A5G2QUP4", "uniprot_id": "A0A5G2QUP4_PIG", "mass": { "chemical_mass": 32426.0, "monoisotopic_mass": 32426.0 }, "refseq": {}, "gene_names": [ { "name": "SMN1", "type": "recommended", "evidence": [ { "id": "A0A5G2QUP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4" } ] } ], "protein_names": [ { "name": "Survival of motor neuron 1, telomeric", "type": "synonym", "evidence": [ { "id": "A0A5G2QUP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUP4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUP4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016970", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016970", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20398", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20398", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22852", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22852", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100170853", "url": "https://www.ncbi.nlm.nih.gov/gene/100170853", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040424", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040424", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047298", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047298", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049481", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049481", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DETVNGM", "url": "https://omabrowser.org/oma/group/DETVNGM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287B5F8", "url": "https://www.orthodb.org/?gene=A0A287B5F8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A480K549", "url": "https://www.orthodb.org/?gene=A0A480K549", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR39267", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39267", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR39267:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39267:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20635", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20635", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20636", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20636", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287B5F8", "url": "https://www.uniprot.org/uniprotkb/A0A287B5F8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5F8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5F8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480K549", "url": "https://www.uniprot.org/uniprotkb/A0A480K549", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480K549-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K549-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKQ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK26", "url": "https://www.uniprot.org/uniprotkb/F1SK26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK26-1", "url": "https://www.uniprot.org/uniprotkb/F1SK26-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "WCRSQVHLGSGVAVAVGSDWIPGLGTSIDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDKPKATPKRKPPKKNKSQKKNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGNREEQNLSDLLSPTSEVANNIEENAQENENESQISTDESESSSRSPGNKPNNIKSKAAPWNSFLPPPPPMPGAGLGPRKPGLKFNGPPPPPPPPPHFLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMVSDHSASFLTVTLCFCDSFVGN", "length": 300, "header": "tr|A0A5G2QUP4-1|A0A5G2QUP4_PIG Isoform 1 of Survival of motor neuron 1, telomeric OS=Sus scrofa OX=9823 GN=SMN1 PE=3 SV=1 CANONICAL=A0A5G2QUP4-1" }, "isoforms": [ { "isoform_ac": "A0A287B5F8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4/entry#A0A287B5F8-1", "sequence": { "sequence": "MAMGGGGGGSGVPEAEDSVLFRRGAGQHALKNGDISEASDKPKATPKRKPPKKNKSQKKNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGNREEQNLSDLLSPTSEVANNIEENAQENENESQISTDESESSSRSPGNKPNNIKSKAAPWNSFLPPPPPMPGAGLGPRKPGLKFNGPPPPPPPPPHFLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEGRCSHFN", "length": 269, "header": "tr|A0A287B5F8-1|A0A5G2QUP4_PIG Computationally mapped isoform of Survival of motor neuron 1, telomeric OS=Sus scrofa OX=9823 GN=SMN1 PE=3 SV=1 CANONICAL=A0A5G2QUP4-1" }, "locus": { "chromosome": "16", "start_pos": 47777318, "end_pos": 47751015, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065110.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065110.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051681.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051681.1" } ] } }, { "isoform_ac": "A0A480K549-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4/entry#A0A480K549-1", "sequence": { "sequence": "MAMGGGGGGSGVPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDKPKATPKRKPPKKNKSQKKNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGNREEQNLSDLLSPTSEVANNIEENAQENENESQISTDESESSSRSPGNKPNNIKSKAAPWNSFLPPPPPMPGAGLGPRKPGLKFNGPPPPPPPPPHFLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEGRCSHFN", "length": 293, "header": "tr|A0A480K549-1|A0A5G2QUP4_PIG Computationally mapped isoform of Survival of motor neuron 1, telomeric OS=Sus scrofa OX=9823 GN=SMN1 PE=3 SV=1 CANONICAL=A0A5G2QUP4-1" }, "locus": { "chromosome": "16", "start_pos": 47777318, "end_pos": 47751015, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084332.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084332.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060482.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060482.2" } ] } }, { "isoform_ac": "A0A5G2QKQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4/entry#A0A5G2QKQ0-1", "sequence": { "sequence": "MAMGGGGGGSGVPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDKPKATPKRKPPKKNKSQKKNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGNREEQNLSDLLSPTSEVANNIEENAQENENESQISTDESESSSRSPGNKPNNIKSKAAPWNSFLPPPPPMPGAGLGPRKIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEGRCSHFN", "length": 262, "header": "tr|A0A5G2QKQ0-1|A0A5G2QKQ0_PIG Computationally mapped isoform of Survival of motor neuron 1, telomeric OS=Sus scrofa OX=9823 GN=SMN1 PE=3 SV=1 CANONICAL=A0A5G2QUP4-1" }, "locus": { "chromosome": "16", "start_pos": 47777318, "end_pos": 47751015, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096715.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096715.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074849.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074849.1" } ] } }, { "isoform_ac": "A0A5G2QUP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4/entry#A0A5G2QUP4-1", "sequence": { "sequence": "WCRSQVHLGSGVAVAVGSDWIPGLGTSIDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDKPKATPKRKPPKKNKSQKKNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGNREEQNLSDLLSPTSEVANNIEENAQENENESQISTDESESSSRSPGNKPNNIKSKAAPWNSFLPPPPPMPGAGLGPRKPGLKFNGPPPPPPPPPHFLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMVSDHSASFLTVTLCFCDSFVGN", "length": 300, "header": "tr|A0A5G2QUP4-1|A0A5G2QUP4_PIG Isoform 1 of Survival of motor neuron 1, telomeric OS=Sus scrofa OX=9823 GN=SMN1 PE=3 SV=1 CANONICAL=A0A5G2QUP4-1" }, "locus": { "chromosome": "16", "start_pos": 47767225, "end_pos": 47757395, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088665.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088665.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068676.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068676.1" } ] } }, { "isoform_ac": "A0A5G2RFK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4/entry#A0A5G2RFK7-1", "sequence": { "sequence": "MAMGGGGGGSGVPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDKPKATPKRKPPKKNKSQKKNTTASLKQNENESQISTDESESSSRSPGNKPNNIKSKAAPWNSFLPPPPPMPGAGLGPRKPGLKFNGPPPPPPPPPHFLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFKQNQKEGRCSHFN", "length": 226, "header": "tr|A0A5G2RFK7-1|A0A5G2QUP4_PIG Computationally mapped isoform of Survival of motor neuron 1, telomeric OS=Sus scrofa OX=9823 GN=SMN1 PE=3 SV=1 CANONICAL=A0A5G2QUP4-1" }, "locus": { "chromosome": "16", "start_pos": 47777318, "end_pos": 47751015, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100009.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100009.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076367.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076367.1" } ] } }, { "isoform_ac": "F1SK26-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4/entry#F1SK26-1", "sequence": { "sequence": "MAMGGGGGGSGVPEAEDSVLFRRGAGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDISEASDKPKATPKRKPPKKNKSQKKNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKRETCIVVYTGYGNREEQNLSDLLSPTSEVANNIEENAQENENESQISTDESESSSRSPGNKPNNIKSKAAPWNSFLPPPPPMPGAGLGPRKPGLKFNGPPPPPPPPPHFLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMVSDHSASFLTVTLCFCDSFVGN", "length": 300, "header": "tr|F1SK26-1|A0A5G2QUP4_PIG Computationally mapped isoform of Survival of motor neuron 1, telomeric OS=Sus scrofa OX=9823 GN=SMN1 PE=3 SV=4 CANONICAL=A0A5G2QUP4-1" }, "locus": { "chromosome": "16", "start_pos": 47777318, "end_pos": 47757395, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018479.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018479.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017979.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017979.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SK26", "url": "https://www.uniprot.org/uniprotkb/F1SK26" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MJF9-1", "protein_name": "Survival motor neuron protein", "gene_name": "LOC100756440", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAMGSGGAVSEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSDKPKGTARRKPAKKNKNQKKNATTPLKQWKVGDKCSAVWSEDGCIYPATITSIDFKKETCVVVYTGYGNREEQNLSDLLSPTCEVANNIEQNTQENESQASTDDSENSSRSLRSKPHGKSKAAPWNSFLPPPPPMPGSGLGPGKPGLRFNGPPPPPPPPPPFLPCWMPPFPSGPPIIPPPPPISPDCLDDTDALGSMLISWYMSGYHTGYYMGFRQNKKEGKCSHTN", "length": 287 }, "evidence": [ { "id": "A0A5G2QUP4", "url": "https://omabrowser.org/oma/group/A0A5G2QUP4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O35876-1", "protein_name": "Survival motor neuron protein", "gene_name": "Smn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMGSGGGAGSEQEDTVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDMCETSDKPKGTARRKPAKKNKNQKKNATAPLKQWKAGDKCSAVWSEDGCVYPATITSVDLKRETCVVVYTGYGNKEEQNLSDLLSPTCEVANNTEQNTQENESQVSTDDSEHSSRSLRSKAHSKSKAAPWTSFLPPPPPVPGAGLGPGKPGLRFSGPPPPPPPPPPFLPCWMPPFPSGPPIIPPPPPISPDCLDDTDALGSMLISWYMSGYHTGYYMGFRQNKKEGKKCSHTN", "length": 289 }, "evidence": [ { "id": "A0A5G2QUP4", "url": "https://omabrowser.org/oma/group/A0A5G2QUP4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P97801-1", "protein_name": "Survival motor neuron protein", "gene_name": "Smn1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAMGSGGAGSEQEDTVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETPDKPKGTARRKPAKKNKSQKKNATTPLKQWKVGDKCSAVWSEDGCIYPATITSIDFKRETCVVVYTGYGNREEQNLSDLLSPTCEVANSTEQNTQENESQVSTDDSEHSSRSLRSKAHSKSKAAPWTSFLPPPPPMPGSGLGPGKPGLKFNGPPPPPPLPPPPFLPCWMPPFPSGPPIIPPPPPISPDCLDDTDALGSMLISWYMSGYHTGYYMGFRQNKKEGKCSHTN", "length": 288 }, "evidence": [ { "id": "A0A5G2QUP4", "url": "https://omabrowser.org/oma/group/A0A5G2QUP4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q16637-1", "protein_name": "Survival motor neuron protein", "gene_name": "SMN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN", "length": 294 }, "evidence": [ { "id": "A0A5G2QUP4", "url": "https://omabrowser.org/oma/group/A0A5G2QUP4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W6S8-1", "protein_name": "Survival motor neuron protein 1", "gene_name": "smn1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANGAEDVVFCRGTGQSDDSDIWDDTALIKAYDKAVASFKNALKGEDGATPQENDNPGKKRKNNKKNKSRKRCNAAPDKEWQVGDSCYAFWSEDGNLYTATITSVDQEKGTCVVFYTDYGNEEEQNLSDLLTEPPDMDEDALKTANVKETESSTEESDRSFTPQKSGHAKHKSKSNFPMGPPSWFPSFPPGPPPPPPHFKKMDGRRGEGPGPSFPGWPPMIPLGPPMIPPPPPMSPDFGEDDEALGSMLISWYMSGYHTGYYMGLRQGRKEAAASKKSHRK", "length": 281 }, "evidence": [ { "id": "A0A5G2QUP4", "url": "https://omabrowser.org/oma/group/A0A5G2QUP4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4" } ], "pmid": "" }, { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "perikaryon", "id": "GO:0043204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043204", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4" } ], "pmid": "" }, { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4" } ], "pmid": "" }, { "name": "Cajal body", "id": "GO:0015030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015030", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4" } ], "pmid": "" }, { "name": "Gemini of Cajal bodies", "id": "GO:0097504", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097504", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP4" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": 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cell-to-cell and cell-to-matrix interactions and is involved in various processes including cellular proliferation, migration, adhesion and attachment, inflammatory response to CNS injury, regulation of vascular inflammation and adaptive responses of the heart to pressure overload and in myocardial function and remodeling. Binds to structural extracellular matrix (ECM) proteins and modulates the ECM in response to tissue damage, contributing to cardioprotective and adaptive ECM remodeling. Plays a role in ER stress response, via its interaction with the activating transcription factor 6 alpha (ATF6) which produces adaptive ER stress response factors and protects myocardium from pressure overload. May contribute to spinal presynaptic hypersensitivity and neuropathic pain states after peripheral nerve injury. May play a role in regulating protective astrogenesis from the subventricular zone (SVZ) niche after injury in a NOTCH1-dependent manner.", "evidence": [ { "database": "UniProtKB", "id": "I3L8H4", "url": "https://www.uniprot.org/uniprotkb/I3L8H4#function" }, { "database": "UniProtKB", "id": "ARBA00054748", "url": "https://www.uniprot.org/uniprotkb/ARBA00054748#function" }, { "database": "UniProtKB", "id": "A0A5G2QTC8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC8#function" }, { "database": "UniProtKB", "id": "F1RF27", "url": "https://www.uniprot.org/uniprotkb/F1RF27#function" }, { "database": "UniProtKB", "id": "F1RF28", "url": "https://www.uniprot.org/uniprotkb/F1RF28#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTC8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "THBS4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC8", "locus": { "chromosome": "2", "start_pos": 88780751, "end_pos": 88726687, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014117", "url": "https://www.ensembl.org/id/ENSSSCG00000014117" } ] } } ], "crossref": [ { "id": "A0A5G2QTC8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTC8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014117", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014117", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16080", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16080", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003367", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003367", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018097", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018097", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024665", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024665", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048287", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048287", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10199", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10199", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10199:SF92", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10199:SF92", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00008", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00008", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05735", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05735", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-186797", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-186797", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QTC8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R891", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R891", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R891-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R891-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RF27", "url": "https://www.uniprot.org/uniprotkb/F1RF27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RF27-1", "url": "https://www.uniprot.org/uniprotkb/F1RF27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RF28", "url": "https://www.uniprot.org/uniprotkb/F1RF28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RF28-1", "url": "https://www.uniprot.org/uniprotkb/F1RF28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8H4", "url": "https://www.uniprot.org/uniprotkb/I3L8H4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8H4-1", "url": "https://www.uniprot.org/uniprotkb/I3L8H4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLATRGAALLLLHLALQPWLAAGAQATPQVFDLLPSASQRLNPSVLQPILSDPTLNELYVISTFKLQTKSSATIFGLYSSADNSKYFEFTVMGRLNKAILRYLKNDGKIHLVVFNNLQLADGRRHRLLLRLTNLHRGAGSVELYLDCTQVDSIHNLPRAFAGLSQSPGSVELRTFQRKAQDSLEELKLVVRGSLFQAASLQDCFLQQSEPLAATNTGDFNRQFLGQMSQLNQLLGEVKDLLRQQVKETSFLRNTIAECQACGPLSFQSPTPNTLVAPAPPASPTPPVRRCDSNPCFRGVRCTDTRDGFQCGPCPEGYTGNGVTCSDVDECRYHPCYPGVRCVNLAPGFRCDACPVGFTGPTVQGVGINFAKTNKQVCTDIDECRNGACVLNSICVNTLGSYRCGPCKPGYIDQMRGCKMERNCRNPELNPCSVNAQCIEERQGDVTCVCGVGWAGDGYICGKDVDIDSYPDEELPCSARNCKKDNCKYVPNSGQEDADRDGIGDACDEDADGDGILNEQDNCVLTHNMDQRNSDKDIYGDACDNCRNVLNNDQRDTDGDGKGDACDDDMDGDGIKNILDNCPKVANRNQQDRDGDGVGDACDSCPDVSNPNQSDVDNDLVGDSCDTNQDSDGDGHQDSTDNCPTVINSAQLDTDKDGIGDECDDDDDNDGIPDLVPPGPDNCRLVPNPGQEDSNSDGVGDICETDFDQDQVIDRIDVCPENAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTQTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKTGPGEHLRNSLWHTGDTSDQVRLLWKDSRNVGWKDKVSYRWFLQHRPQVGYIRVRFYEGSELVADSGVTIDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDFQEFQTQNFDRLDN", "length": 960, "header": "tr|A0A5G2QTC8-1|A0A5G2QTC8_PIG Isoform 1 of Thrombospondin-4 OS=Sus scrofa OX=9823 GN=THBS4 PE=1 SV=1 CANONICAL=A0A5G2QTC8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC8/entry#A0A5G2QTC8-1", "sequence": { "sequence": "MLATRGAALLLLHLALQPWLAAGAQATPQVFDLLPSASQRLNPSVLQPILSDPTLNELYVISTFKLQTKSSATIFGLYSSADNSKYFEFTVMGRLNKAILRYLKNDGKIHLVVFNNLQLADGRRHRLLLRLTNLHRGAGSVELYLDCTQVDSIHNLPRAFAGLSQSPGSVELRTFQRKAQDSLEELKLVVRGSLFQAASLQDCFLQQSEPLAATNTGDFNRQFLGQMSQLNQLLGEVKDLLRQQVKETSFLRNTIAECQACGPLSFQSPTPNTLVAPAPPASPTPPVRRCDSNPCFRGVRCTDTRDGFQCGPCPEGYTGNGVTCSDVDECRYHPCYPGVRCVNLAPGFRCDACPVGFTGPTVQGVGINFAKTNKQVCTDIDECRNGACVLNSICVNTLGSYRCGPCKPGYIDQMRGCKMERNCRNPELNPCSVNAQCIEERQGDVTCVCGVGWAGDGYICGKDVDIDSYPDEELPCSARNCKKDNCKYVPNSGQEDADRDGIGDACDEDADGDGILNEQDNCVLTHNMDQRNSDKDIYGDACDNCRNVLNNDQRDTDGDGKGDACDDDMDGDGIKNILDNCPKVANRNQQDRDGDGVGDACDSCPDVSNPNQSDVDNDLVGDSCDTNQDSDGDGHQDSTDNCPTVINSAQLDTDKDGIGDECDDDDDNDGIPDLVPPGPDNCRLVPNPGQEDSNSDGVGDICETDFDQDQVIDRIDVCPENAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTQTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKTGPGEHLRNSLWHTGDTSDQVRLLWKDSRNVGWKDKVSYRWFLQHRPQVGYIRVRFYEGSELVADSGVTIDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDFQEFQTQNFDRLDN", "length": 960, "header": "tr|A0A5G2QTC8-1|A0A5G2QTC8_PIG Isoform 1 of Thrombospondin-4 OS=Sus scrofa OX=9823 GN=THBS4 PE=1 SV=1 CANONICAL=A0A5G2QTC8-1" }, "locus": { "chromosome": "2", "start_pos": 88780593, "end_pos": 88729694, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085010.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085010.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068181.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068181.1" } ] } }, { "isoform_ac": "A0A5G2R891-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC8/entry#A0A5G2R891-1", "sequence": { "sequence": "VYGSSRGVESELQLLTYTTATQDPSFACNLHYSSWPRWIRDPLIFDLLPSASQRLNPSVLQPILSDPTLNELYVISTFKLQTKSSATIFGLYSSADNSKYFEFTVMGRLNKAILRYLKNDGKIHLVVFNNLQLADGRRHRLLLRLTNLHRGAGSVELYLDCTQVDSIHNLPRAFAGLSQSPGSVELRTFQRKAQDSLEELKLVVRGSLFQAASLQDCFLQQSEPLAATNTGDFNRQFLGQMSQLNQLLGEVKDLLRQQVKETSFLRNTIAECQACGPLSFQSPTPNTLVAPAPPASPTPPVRRCDSNPCFRGVRCTDTRDGFQCGPCPEGYTGNGVTCSDVDECRYHPCYPGVRCVNLAPGFRCDACPVGFTGPTVQGVGINFAKTNKQVCTDIDECRNGACVLNSICVNTLGSYRCGGCKMERNCRNPELNPCSVNAQCIEERQGDVTCVVSLRSLDNCKYVPNSGQEDADRDGIGDACDEDADGDGILNEQDNCVLTHNMDQRNSDKDIYGDACDNCRNVLNNDQRDTDGDGKGDACDDDMDGDGIKNILDNCPKVANRNQQDRDGDGVGDACDSCPDVSNPNQSDVDNDLVGDSCDTNQDSDGDGHQDSTDNCPTVINSAQLDTDKDGIGDECDDDDDNDGIPDLVPPGPDNCRLVPNPGQEDSNSDGVGDICETDFDQDQVIDRIDVCPENAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTQTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKTGPGEHLRNSLWHTGDTSDQVRLLWKDSRNVGWKDKVSYRWFLQHRPQVGYIRVRFYEGSELVADSGVTIDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDFQEFQTQNFDRLDN", "length": 934, "header": "tr|A0A5G2R891-1|A0A5G2R891_PIG Computationally mapped isoform of Thrombospondin 4 OS=Sus scrofa OX=9823 GN=THBS4 PE=1 SV=1 CANONICAL=A0A5G2QTC8-1" }, "locus": { "chromosome": "2", "start_pos": 88780593, "end_pos": 88735037, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088177.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088177.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072538.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072538.1" } ] } }, { "isoform_ac": "F1RF27-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC8/entry#F1RF27-1", "sequence": { "sequence": "MQYSIISYSDRASSPFKTRVCPKFKSLTHCPFSPPFSPVFDLLPSASQRLNPSVLQPILSDPTLNELYVISTFKLQTKSSATIFGLYSSADNSKYFEFTVMGRLNKAILRYLKNDGKIHLVVFNNLQLADGRRHRLLLRLTNLHRGAGSVELYLDCTQVDSIHNLPRAFAGLSQSPGSVELRTFQRKAQDSLEELKLVVRGSLFQAASLQDCFLQQSEPLAATNTGDFNRQFLGQMSQLNQLLGEVKDLLRQQVKETSFLRNTIAECQACGPLSFQSPTPNTLVAPAPPASPTPPVRRCDSNPCFRGVRCTDTRDGFQCGPCPEGYTGNGVTCSDVDECRYHPCYPGVRCVNLAPGFRCDACPVGFTGPTVQGVGINFAKTNKQVCTDIDECRNGACVLNSICVNTLGSYRCGPCKPGGCKMERNCRNPELNPCSVNAQCIEERQGDVTCVCGVGWAGDGYICGKDVDIDSYPDEELPCSARNCKKDNCKYVPNSGQEDADRDGIGDACDEDADGDGILNEQDNCVLTHNMDQRNSDKDIYGDACDNCRNVLNNDQRDTDGDGKGDACDDDMDGDGIKNILDNCPKVANRNQQDRDGDGVGDACDSCPDVSNPNQSDVDNDLVGDSCDTNQDSDGDGHQDSTDNCPTVINSAQLDTDKDGIGDECDDDDDNDGIPDLVPPGPDNCRLVPNPGQEDSNSDGVGDICETDFDQDQVIDRIDVCPENAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTQTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKTGPGEHLRNSLWHTGDTSDQVRLLWKDSRNVGWKDKVSYRWFLQHRPQVGYIRVRFYEGSELVADSGVTIDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDFQEFQTQNFDRLDN", "length": 963, "header": "tr|F1RF27-1|A0A5G2QTC8_PIG Computationally mapped isoform of Thrombospondin-4 OS=Sus scrofa OX=9823 GN=THBS4 PE=1 SV=3 CANONICAL=A0A5G2QTC8-1" }, "locus": { "chromosome": "2", "start_pos": 88780593, "end_pos": 88731122, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015422.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015422.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015013.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015013.3" } ] } }, { "isoform_ac": "F1RF28-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC8/entry#F1RF28-1", "sequence": { "sequence": "TASLTHCPFSPPFSPVFDLLPSASQRLNPSVLQPILSDPTLNELYVISTFKLQTKSSATIFGLYSSADNSKYFEFTVMGRLNKAILRYLKNDGKIHLVVFNNLQLADGRRHRLLLRLTNLHRGAGSVELYLDCTQVDSIHNLPRAFAGLSQSPGSVELRTFQRKAQDSLEELKLVVRGSLFQAASLQDCFLQQSEPLAATNTGDFNRQFLGQMSQLNQLLGEVKDLLRQQVKETSFLRNTIAECQACGPLSFQSPTPNTLVAPAPPASPTPPVRRCDSNPCFRGVRCTDTRDGFQCGPCPEGYTGNGVTCSDVDECRYHPCYPGVRCVNLAPGFRCDACPVGFTGPTVQGVGINFAKTNKQVCTDIDECRNGACVLNSICVNTLGSYRCGGCKMERNCRNPELNPCSVNAQCIEERQGDVTCVCGVGWAGDGYICGKDVDIDSYPDEELPCSARNCKKDNCKYVPNSGQEDADRDGIGDACDEDADGDGILNEQDNCVLTHNMDQRNSDKDIYGDACDNCRNVLNNDQRDTDGDGKGDACDDDMDGDGIKNILDNCPKVANRNQQDRDGDGVGDACDSCPDVSNPNQSDVDNDLVGDSCDTNQDSDGDGHQDSTDNCPTVINSAQLDTDKDGIGDECDDDDDNDGIPDLVPPGPDNCRLVPNPGQEDSNSDGVGDICETDFDQDQVIDRIDVCPENAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTQTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKTGPGEHLRNSLWHTGDTSDQVRLLWKDSRNVGWKDKVSYRWFLQHRPQVGYIRVRFYEGSELVADSGVTIDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDFQEFQTQNFDRLDN", "length": 935, "header": "tr|F1RF28-1|A0A5G2QTC8_PIG Computationally mapped isoform of Thrombospondin-4 OS=Sus scrofa OX=9823 GN=THBS4 PE=1 SV=5 CANONICAL=A0A5G2QTC8-1" }, "locus": { "chromosome": "2", "start_pos": 88780593, "end_pos": 88735072, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015421.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015421.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015012.5", "url": "https://www.ensembl.org/id/ENSSSCP00000015012.5" } ] } }, { "isoform_ac": "I3L8H4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC8/entry#I3L8H4-1", "sequence": { "sequence": "MEVPRLEVESELQLPACARATAIPNPSRALHHSSRQHQILNPGQGSNPQHHIFDLLPSASQRLNPSVLQPILSDPTLNELYVISTFKLQTKSSATIFGLYSSADNSKYFEFTVMGRLNKAILRYLKNDGKIHLVVFNNLQLADGRRHRLLLRLTNLHRGAGSVELYLDCTQVDSIHNLPRAFAGLSQSPGSVELRTFQRKAQDSLEELKLVVRGSLFQAASLQDCFLQQSEPLAATNTGDFNRQFLGQMSQLNQLLGEVKDLLRQQVKETSFLRNTIAECQACGPLSFQSPTPNTLVAPAPPASPTPPVRRCDSNPCFRGVRCTDTRDGFQCGPCPEGYTGNGVTCSDVDECRYHPCYPGVRCVNLAPGFRCDACPVGFTGPTVQGVGINFAKTNKQVCTDIDECRNGACVLNSICVNTLGSYRCGPCKPGGCKMERNCRNPELNPCSVNAQCIEERQGDVTCVCGVGWAGDGYICGKDVDIDSYPDEELPCSARNCKKDNCKYVPNSGQEDADRDGIGDACDEDADGDGILNEQDNCVLTHNMDQRNSDKDIYGDACDNCRNVLNNDQRDTDGDGKGDACDDDMDGDGIKNILDNCPKVANRNQQDRDGDGVGDACDSCPDVSNPNQSDVDNDLVGDSCDTNQDSDGDGHQDSTDNCPTVINSAQLDTDKDGIGDECDDDDDNDGIPDLVPPGPDNCRLVPNPGQEDSNSDGVGDICETDFDQDQVIDRIDVCPENAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTQTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKTGPGEHLRNSLWHTGDTSDQVRLLWKDSRNVGWKDKVSYRWFLQHRPQVGYIRVRFYEGSELVADSGVTIDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDFQEFQTQNFDRLDN", "length": 976, "header": "tr|I3L8H4-1|A0A5G2QTC8_PIG Computationally mapped isoform of Thrombospondin-4 OS=Sus scrofa OX=9823 GN=THBS4 PE=1 SV=2 CANONICAL=A0A5G2QTC8-1" }, "locus": { "chromosome": "2", "start_pos": 88780593, "end_pos": 88734464, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029318.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029318.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020334.2", "url": "https://www.ensembl.org/id/ENSSSCP00000020334.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 284, "start_aa": "Thr", "end_pos": 284, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr284", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L8H4", "url": "https://www.uniprot.org/uniprotkb/I3L8H4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-186797", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-186797", "resource": "Reactome", "description": "Signaling by PDGF" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 12, "go_terms": [ { "name": "endothelial cell-cell adhesion", "id": "GO:0071603", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071603", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTC8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC8" } ], "pmid": "" }, { "name": "positive regulation of endothelial cell proliferation", "id": "GO:0001938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001938", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTC8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC8" } ], "pmid": "" }, { "name": "positive regulation of cell division", "id": "GO:0051781", "url": 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"https://www.uniprot.org/uniprotkb/A0A286ZLR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLR9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0I2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0I2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BF91", "url": "https://www.uniprot.org/uniprotkb/A0A287BF91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BF91-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BF91-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8W8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8W8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4I0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4I0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4I0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4I0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVTEDLHFGPAAGTRFFCTASRGLEPFLLREVRTRLRATQVEYISGKVFFTTCCDLNMLKRLKSAERLFLLIKKQFPFNVSSVSKGQIFNEMEKLINDDPENWLNTLSIWKNLLEFDAKEEELSQKDVNSLKRKVGEDDNTIAKKVKTEQVQEIHENKECQREKQTEETLEQGNCITQREELQEEELQNDAVEAVDTPTKGKHLTFRVSCRCSGAIAKTFTTQEIGRVIGIALKKQFGWKVDLRNPNLEIFIHLSDIYSVVGIPVFRVPLASRAYIKTAGLRSTIAWAMASLAEIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGASDNLKAAGLKDKIELLKGSVIELPLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVGGTIVLLLSGDHLRRLKGCEESSVSLCPKGSRTDEPGSEECLNPEEKAAVPEPAWSSLEASNQEHLDRMPPFGSLVPVECYKVSLGKPDAFIYKYKKSHSPGQ", "length": 504, "header": "tr|A0A287B0I2-1|A0A287B0I2_PIG Isoform 1 of U6 snRNA (guanine-N(2))-methyltransferase THUMPD2 OS=Sus scrofa OX=9823 GN=THUMPD2 PE=1 SV=1 CANONICAL=A0A287B0I2-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2/entry#A0A286ZLR9-1", "sequence": { "sequence": "MAAVTEDLHFGPAAGTRFFCTASRGLEPFLLREVRTRLRATQVEYISGKVFFTTCCDLNMLKRLKSAERLFLLIKKQFPFNVSSVSKGQIFNEMEKLINDDPENWLNTLSIWKNLLEFDAKEEELSQKDVNSLKRKVGEDDNTIAKKVKTEQVQEIHENKECQREKQTEETLEQGNCITQREELQEEELQNDAVEAVDTPTKGKHLTFRVSCRCSGAIAKTFTTQIFIHLSDIYSVVGIPVFRVPLASRAYIKTAGLRSTIAWAMASLAEIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGASDNLKAAGLKDKIELLKGSVIELPLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVGGTIVLLLSGDHLRRLKGCEESSVSLCPKGSRTDEPGSEECLNPEEKAAVPEPAWSSLEASNQEHLDRMPPFGSLVPVECYKVSLGKPDAFIYKYKKSHSPGQ", "length": 478, "header": "tr|A0A286ZLR9-1|A0A287B0I2_PIG Computationally mapped isoform of U6 snRNA (guanine-N(2))-methyltransferase THUMPD2 OS=Sus scrofa OX=9823 GN=THUMPD2 PE=1 SV=1 CANONICAL=A0A287B0I2-1" }, "locus": { "chromosome": "3", "start_pos": 100597268, "end_pos": 100557208, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039948.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039948.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032515.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032515.1" } ] } }, { "isoform_ac": "A0A287B0I2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2/entry#A0A287B0I2-1", "sequence": { "sequence": "MAAVTEDLHFGPAAGTRFFCTASRGLEPFLLREVRTRLRATQVEYISGKVFFTTCCDLNMLKRLKSAERLFLLIKKQFPFNVSSVSKGQIFNEMEKLINDDPENWLNTLSIWKNLLEFDAKEEELSQKDVNSLKRKVGEDDNTIAKKVKTEQVQEIHENKECQREKQTEETLEQGNCITQREELQEEELQNDAVEAVDTPTKGKHLTFRVSCRCSGAIAKTFTTQEIGRVIGIALKKQFGWKVDLRNPNLEIFIHLSDIYSVVGIPVFRVPLASRAYIKTAGLRSTIAWAMASLAEIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGASDNLKAAGLKDKIELLKGSVIELPLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVGGTIVLLLSGDHLRRLKGCEESSVSLCPKGSRTDEPGSEECLNPEEKAAVPEPAWSSLEASNQEHLDRMPPFGSLVPVECYKVSLGKPDAFIYKYKKSHSPGQ", "length": 504, "header": "tr|A0A287B0I2-1|A0A287B0I2_PIG Isoform 1 of U6 snRNA (guanine-N(2))-methyltransferase THUMPD2 OS=Sus scrofa OX=9823 GN=THUMPD2 PE=1 SV=1 CANONICAL=A0A287B0I2-1" }, "locus": { "chromosome": "3", "start_pos": 100597268, "end_pos": 100557208, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062890.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062890.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049728.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049728.1" } ] } }, { "isoform_ac": "A0A287BF91-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2/entry#A0A287BF91-1", "sequence": { "sequence": "MAVATGDPRFGPAVGARFFCTASRGLEPFLLQEVRARLRATQVEYISGKVFFTTCCDLNMLKRLKSAERLFLLIKKQFPFNVSSVSKGQIFNEMEKLINDDPENWLNTLSIWKNLLEFDAKEEELSQKDVNSLKRKVGEDDNTIAKKVKTEQVQEIHENKECQREKQTEETLEQGNCITQREELQEEELQNDAVEAVDTPTKGKHLTFRVSCRCSGAIAKTFTTQEIGRVIGIALKKQFGWKVDLRNPNLEAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGASDNLKAAGLKDKIELLKGSVIELPLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVGGTIVLLLSGDHLRRLKGCEESSVSLCPKGSRTDEPGSEECLNPEEKAAVPEPAWSSLEASNQEHLDRMPPFGSLVPVECYKVSLGKPDAFIYKYKKSHSPGQ", "length": 457, "header": "tr|A0A287BF91-1|A0A287BF91_PIG Computationally mapped isoform of THUMP domain containing 2 OS=Sus scrofa OX=9823 GN=THUMPD2 PE=1 SV=2 CANONICAL=A0A287B0I2-1" }, "locus": { "chromosome": "3", "start_pos": 100597268, "end_pos": 100559291, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052081.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052081.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055202.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055202.2" } ] } }, { "isoform_ac": "A0A5G2Q8W8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2/entry#A0A5G2Q8W8-1", "sequence": { "sequence": "MAVATGDPRFGPAVGARFFCTASRGLEPFLLQEVRARLRATQVEYISGKVFFTTCCDLNMLKRLKSAERLFLLIKKQFPFNVSSVSKGQIFNEMEKLINDDPENWLNTLSIWKNLLEFDAKEEELSQKDVNSLKRKVGEDDNTIAKKVKTEQVQEIHENKECQREKQTEETLEQGNCITQREELQEEELQNDAVEAVDTPTKGKHLTFRVSCRCNSNGVFFVYLFISCSLIYSNTGYSFLCRVPLASRAYIKTAGLRSTIAWAMASLAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGASDNLKAAGLKDKIELLKGSVIELPLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVGGTIVLLLSGDHLRRLKGCEESSVSLCPKGSRTDEPGSEECLNPEEKAAVPEPAWSSLEASNQEHLDRMPPFGSLVPVECYKVSLGKPDAFIYKYKKSHSPGQ", "length": 473, "header": "tr|A0A5G2Q8W8-1|A0A287B0I2_PIG Computationally mapped isoform of U6 snRNA (guanine-N(2))-methyltransferase THUMPD2 OS=Sus scrofa OX=9823 GN=THUMPD2 PE=1 SV=1 CANONICAL=A0A287B0I2-1" }, "locus": { "chromosome": "3", "start_pos": 100597268, "end_pos": 100559291, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087068.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087068.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059712.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059712.1" } ] } }, { "isoform_ac": "A0A5G2R4I0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2/entry#A0A5G2R4I0-1", "sequence": { "sequence": "MAAVTEDLHFGPAAGTRFFCTASRGLEPFLLREVRTRLRATQVILPFPPGSPSATSCLPAPARHLRGRAARARGHVTLKAMAVATGDPRFGPAVGARFFCTASRGLEPFLLQEVRARLRATQVEYISGKVFFTTCCDLNMLKRLKSAERLFLLIKKQFPFNVSSVSKGQIFNEMEKLINDDPENWLNTLSIWKNLLEFDAKEEELSQKDVNSLKRKVGEDDNTIAKKVKTEQVQEIHENKECQREKQTEETLEQGNCITQREELQEEELQNDAVEAVDTPTKGKHLTFRVSCRCSGAIAKTFTTQEIGRVIGIALKKHNGVFFVYLFISCSLIYSNTGYSFLCRVPLASRAYIKTAGLRSTIAWAMASLAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGASDNLKAAGLKDKIELLKGSVIELPLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVGGTIVLLLSGDHLRRLKGCEESSVSLCPKGSRTDEPGSEECLNPEEKAAVPEPAWSSLEASNQEHLDRMPPFGSLVPVECYKVSLGKPDAFIYKYKKSHSPGQ", "length": 575, "header": "tr|A0A5G2R4I0-1|A0A287B0I2_PIG Computationally mapped isoform of U6 snRNA (guanine-N(2))-methyltransferase THUMPD2 OS=Sus scrofa OX=9823 GN=THUMPD2 PE=1 SV=1 CANONICAL=A0A287B0I2-1" }, "locus": { "chromosome": "3", "start_pos": 100597268, "end_pos": 100557208, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072125.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072125.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069095.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069095.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8W8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517336", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517336", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2KA02-1", "protein_name": "THUMP domain containing 2", "gene_name": "Thumpd2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAGADPGSEPAGGAQFFCTAGRGLEPFLMREVRARLEATQVEYISGKVFFTTCSDLPSMKKLKSAERLFLLIKKQLPITVSSLHRGRLLNEMQRFINDDPGSWLKAISLWRKLLDHDTNGEKVSQGDANPLKRKAGENDSITPKKLKLEEMQVVDKSHGESQQDQPQGPLEQGETLARTDELQEQRLHRASETAAHAQSPEDLTFRISCRCSGSIRKVVTGQEAGRVAGLALMRQFGWKADLRKPDLEIFMHLSDAYSVVGIPLLRVPLASRTYLQTAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYVGADVSDSQLLGACDNLKAAGLAHRIELLKGSVADLPLPAQSVDVIISDIPFGKKFKLGKDIKSILQEMERWPLWRKGTEYPAGEGDHPGCAVGIVKRCLPTEVAAEGVLHVDGVMILLLSEDHHRRLTDCGGSSMPPTSQGNVSDPEMKMLLNPDRTGAPDTASPSQKASSLQSLGRPLPCGSLVPVESFKVSLGKTDAFICKYKKASASGLSPSRCHEPGAHPEVAAMQGSPGLQDSICPGAPSAQPLPVGMAKNTAVR", "length": 586 }, "evidence": [ { "id": "A0A287B0I2", "url": "https://omabrowser.org/oma/group/A0A287B0I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0Z076-1", "protein_name": "U6 snRNA (guanine-N(2))-methyltransferase THUMPD2", "gene_name": "THUMPD2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAGARYFCTAGRGLEPFLAREVRARLGATEVDYVLGKVFFTTAAEPGELKELKSGERLFLLLKKCVPLSVSRNKGKMLHEIKSLLTEEPKSCLDVIATWRKLRSHEGKKDEASQENRSPHKRKPEEEINIASKRQKTEQVREIASEECQAGAGENCVVSEEESDQDCQAESKASLEGPTRSSIEKPIENEKQNFSFRVSCRCSGAIAKILTSQEIGRAVGIALRKQFGWQADLRAPDLEIFLHLNDIHSVVGIPLFRLPLANREYIKTAGLRSTVAWAMASLAEISVGAFVLDPMCGLGTILLEAAKEWPEACYWGTDTSDSQLEGASVNIKAAGLDDKIELFKASVKALPLPSESFDAVISDIPFGKKFKITKDIQLLPDILQEMERVLRVGGIIVLLLNQDLRKRMDGIAKTVENESLNAIADGAGETTAVKALNNDGNSSSLGAGIEEPVLSCGQMRFGSLVPDGIYEVSLGKTDAFIYKYKKISTAGNK", "length": 494 }, "evidence": [ { "id": "A0A287B0I2", "url": "https://omabrowser.org/oma/group/A0A287B0I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1B8U2-1", "protein_name": "U6 snRNA (guanine-N(2))-methyltransferase THUMPD2", "gene_name": "THUMPD2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAVVPGGPSSRPAVGAQFFCTAGRGLEPFLMREVRERLAATQVEYISGKVFFTTCSDLNMLKQLKSAERLFLLIKKQLPFPVSSVSKGKILNELQRLINDDPESWLNAISIWKNLLELDAKKEKLSHKNANPLKRKVGEDDITAKKLKTEQIQELQETKECQLEKQIEEKILEQGNFITEGEKFQKLQDDVTEAVDTRNQTNLTFRVSCRCSGAVAKTLTAQEVGRVIGIALMKQFGWKADLRNPNLEIFIHLSDVYSVLGIPVFRVPLACRAYIKTAGLRSTIAWAMASLAEIKAGAVVLDPMCGLGTILLEAAKEWPHVYYVGADVSDSQLSGAYDNLRAAGLRDKIELLQVSVIELPLPSESVDIIISDIPFGKKFKLGKDIKRMLQEMERVLRVGGTIVLLLSEDHHRHLKGGEASSGPLNSQGGHTEEPGGEERLTPAEKAAVSEPVSSPFAASNQGRLDRMPPLGSLVPVDCYRVSLGKTDALISKYKKSHSPGR", "length": 501 }, "evidence": [ { "id": "A0A287B0I2", "url": "https://omabrowser.org/oma/group/A0A287B0I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9BTF0-1", "protein_name": "U6 snRNA (guanine-N(2))-methyltransferase THUMPD2", "gene_name": "THUMPD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSEARGEPGSGPEAGARFFCTAGRGLEPFVMREVRARLAATQVEYISGKVFFTTCSDLNMLKKLKSAERLFLLIKKQFPLIISSVSKGKIFNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQNDIEKAIDTHNQNDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQLEIFIHLNDIYSVVGIPVFRVSLASRAYIKTAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDNLKAAGLEDKIELLKISVIELPLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVGGTIVLLLSEDHHRRLTDCKESNIPFNSKDSHTDEPGIKKCLNPEEKTGAFKTASTSFEASNHKFLDRMSPFGSLVPVECYKVSLGKTDAFICKYKKSHSSGL", "length": 503 }, "evidence": [ { "id": "A0A287B0I2", "url": "https://omabrowser.org/oma/group/A0A287B0I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CZB3-1", "protein_name": "U6 snRNA (guanine-N(2))-methyltransferase THUMPD2", "gene_name": "Thumpd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVAQADPGSDPAGGARFFCTAGRGLEPFLMREVRARLEATQVEYISGKVFFTTCSDLPSMKKLKSAERLFVLIKKQLPIAVSSLHKGKILNEMQRFVNDDPGSWLEAISLWKKLLEHDPKREKVSQRDANPLKRKAGENETIIAKKLKVEEKQEVAKDHGESQEDKLLQGSPEQGEAVTRTELQDHRLNSTTEKAADAQDQEDLTFRVSCRCTGNVRKVITGQEAGRVIGLALMRQFGWKADLRNPNIEIFMHLSDAYSVVGIPLLRMPLASRTYIQTAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYMGADMSDAQLLGACDNLKAAGLTDRIELLKSSVTDLPLPSQSTDVIISDIPFGKKFKLGKDIKSILQEMERVLRVGGAMVLLLSEDHHRHLTDCGGSSIPLTSKGHIAEPEMKTLSNPDRTGAPDTASPSQRASSVQCLGRMRPCGSLVPVESFKVSLGKTDAFICKYKKAQASGLSSAECHEPGAHTEMAAMQESPSLQDSL", "length": 528 }, "evidence": [ { "id": "A0A287B0I2", "url": "https://omabrowser.org/oma/group/A0A287B0I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0I2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2" } ], "pmid": "" }, { "name": "methyltransferase activity", "id": "GO:0008168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008168", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0I2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2" } ], "pmid": "" }, { "name": "tRNA (guanine) methyltransferase activity", "id": "GO:0016423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016423", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0I2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2" } ], "pmid": "" }, { "name": "U6 snRNA (guanine-N(2))-methyltransferase activity", "id": "GO:0160230", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160230", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0I2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2" } ], "pmid": "" }, { "name": "snRNA methyltransferase activity", "id": "GO:0106346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106346", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0I2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2" } ], "pmid": "" }, { "name": "RNA methyltransferase activity", "id": "GO:0008173", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008173", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0I2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0I2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2" } ], "pmid": "" }, { "name": "tRNA methyltransferase complex", "id": "GO:0043527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043527", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0I2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0I2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2" } ], "pmid": "" }, { "name": "tRNA methylation", "id": "GO:0030488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030488", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0I2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2" } ], "pmid": "" }, { "name": "regulation of alternative mRNA splicing, via spliceosome", "id": "GO:0000381", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000381", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0I2", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "83423", "name": "", "equation": "guanosine in U6 snRNA + S-adenosyl-L-methionine = N(2)-methylguanosine in U6 snRNA + S-adenosyl-L-homocysteine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "83423", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/83423" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287B0I2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 504, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287B0I2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287B0I2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287B0I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B0I2" }, { "id": "PS51165", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51165" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "THUMP", "eco_id": "ECO_0000259", "start_pos": 161, "end_pos": 267, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A5G2QSZ0-1", "uniprot_ac": "A0A5G2QSZ0", "uniprot_id": "A0A5G2QSZ0_PIG", "mass": { "chemical_mass": 49259.0, "monoisotopic_mass": 49259.0 }, "refseq": {}, "gene_names": [ { "name": "BCL2L13", "type": "recommended", "evidence": [ { "id": "A0A5G2QSZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0" } ] } ], "protein_names": [ { "name": "BCL2 like 13", "type": "synonym", "evidence": [ { "id": "A0A5G2QSZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BCL2L13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0", "locus": { "chromosome": "5", "start_pos": 69855272, "end_pos": 69778950, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040373", "url": "https://www.ensembl.org/id/ENSSSCG00000040373" } ] } } ], "crossref": [ { "id": "A0A5G2QSZ0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSZ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040373", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040373", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR036834", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036834", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042398", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042398", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046371", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046371", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MHEALQT", "url": "https://omabrowser.org/oma/group/MHEALQT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15758", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15758", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15758:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15758:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00452", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00452", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AZD8", "url": "https://www.uniprot.org/uniprotkb/A0A287AZD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZD8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ79", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ79-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ79-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTR0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5A3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5A3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5A3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RGU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RGU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLY1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLY1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP35", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP35-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VSTTVPLGFHYETKYVVLSYLGLLSQEKLQEHLSLPQGFQDIASQPLDPEVLLKVKTEIEEELKSLDKEISEAFTSTGFDRHTSPVFSPANPESSLEDCLAHLGEKASQELKVPLLGALQVLLSRPVTYQAYRECTLETTVHASGWNKILVPLILLRQMLLELTRRGQEPLGALLQFGVTYLEDHAAEYIIQQGGWGTVFNLESEDEECPAGTAEDSNDIYILPSDSSAHVSPPESPTAAASWQAESLPVSLSASQSWHTESMPVSLGPESWQQVTVDPEEVKSLDSNGAGEKSENNSSNSDIVHVEKEEIPEGVEEAAMAARALPAGELPEVAPGAREPSLPRITAPSLTEAMGPDVEVTAIERVSPTTSVFVELGEEEAEAEPADLEQVGGPVLEPPAPLTSQEGVDGRGRGLRAGPPVASDQKAGLPYEGKSILLFGGAAAVAILAVAVGVALALRRK", "length": 461, "header": "tr|A0A5G2QSZ0-1|A0A5G2QSZ0_PIG Isoform 1 of BCL2 like 13 OS=Sus scrofa OX=9823 GN=BCL2L13 PE=1 SV=2 CANONICAL=A0A5G2QSZ0-1" }, "isoforms": [ { "isoform_ac": "A0A287AZD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0/entry#A0A287AZD8-1", "sequence": { "sequence": "IRAVGRSRRLHHRRGFLSRAAAATAASFTFSGAGAWARFCTSVSRPLWSSASQPHGVSTTVPLGFHYETKYVVLSYLGLLSQEKLQEHLSLPQGIICDIASQPLDPEVLLKVKTEIEEELKSLDKEISEAFTSTGFDRHTSPVFSPANPESSLEDCLAHLGEKASQELKVPLLGALQVLLSEQCHCLYLLFLFFSEDEECPAGTAEDSNDIYILPSDSSAHVSPPESPTAAASWQAESLPVSLSASQSWHTESMPVSLGPESWQQVTVDPEEVKSLDSNGAGEKSENNSSNSDIVHVEKEEIPEGVEEAAMAARALPAGELPEVAPGAREPSLPRITAPSLTEAMGPDVEVTAIERVSPTTSVFVELGEEEAEAEPADLEQVGGPVLEPPAPLTSQEGVDGRGRGLRAGPPVASDQKAGLPYEGKSILLFGGAAAVAILAVAVGVALALRRK", "length": 452, "header": "tr|A0A287AZD8-1|A0A5G2QSZ0_PIG Computationally mapped isoform of BCL2 like 13 OS=Sus scrofa OX=9823 GN=BCL2L13 PE=1 SV=2 CANONICAL=A0A5G2QSZ0-1" }, "locus": { "chromosome": "5", "start_pos": 69841778, "end_pos": 69779368, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060371.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060371.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049227.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049227.2" } ] } }, { "isoform_ac": "A0A5G2QQ79-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0/entry#A0A5G2QQ79-1", "sequence": { "sequence": "IRAVGRSRRLHHRRGFLSRAAAATAASFTFSGAGAWARFCTSVSRPLWSSASQPHGVSTTVPLGFHYETKYVVLSYLGLLSQEKLQEHLSLPQGVQQDIASQPLDPEVLLKVKTEIEEELKSLDKEISEAFTSTGFDRHTSPVFSPANPESSLEDCLAHLGEKASQELKVPLLGALQVLLSRPVTYQAYRECTLETTVHASGWNKGTVFNLESEDEECPAGTAEDSNDIYILPSDSSAHVSPPESPTAAASWQAESLPVSLSASQSWHTESMPVSLGPESWQQVTVDPEEVKSLDSNGAGEKSENNSSNSDIVHVEKEEIPEGVEEAAMAARALPAGELPEVAPGAREPSLPRITAPSLTEAMGPDVEVTAIERVSPTTSVFVELGEEEAEAEPADLEQVGGPVLEPPAPLTSQEGVDGRGRGLRAGPPVASDQKAGLPYEGKSILLFGGAAAVAILAVAVGVALALRRK", "length": 470, "header": "tr|A0A5G2QQ79-1|A0A5G2QSZ0_PIG Computationally mapped isoform of BCL2 like 13 OS=Sus scrofa OX=9823 GN=BCL2L13 PE=1 SV=1 CANONICAL=A0A5G2QSZ0-1" }, "locus": { "chromosome": "5", "start_pos": 69841778, "end_pos": 69779368, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080615.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080615.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067051.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067051.1" } ] } }, { "isoform_ac": "A0A5G2QSZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0/entry#A0A5G2QSZ0-1", "sequence": { "sequence": "VSTTVPLGFHYETKYVVLSYLGLLSQEKLQEHLSLPQGFQDIASQPLDPEVLLKVKTEIEEELKSLDKEISEAFTSTGFDRHTSPVFSPANPESSLEDCLAHLGEKASQELKVPLLGALQVLLSRPVTYQAYRECTLETTVHASGWNKILVPLILLRQMLLELTRRGQEPLGALLQFGVTYLEDHAAEYIIQQGGWGTVFNLESEDEECPAGTAEDSNDIYILPSDSSAHVSPPESPTAAASWQAESLPVSLSASQSWHTESMPVSLGPESWQQVTVDPEEVKSLDSNGAGEKSENNSSNSDIVHVEKEEIPEGVEEAAMAARALPAGELPEVAPGAREPSLPRITAPSLTEAMGPDVEVTAIERVSPTTSVFVELGEEEAEAEPADLEQVGGPVLEPPAPLTSQEGVDGRGRGLRAGPPVASDQKAGLPYEGKSILLFGGAAAVAILAVAVGVALALRRK", "length": 461, "header": "tr|A0A5G2QSZ0-1|A0A5G2QSZ0_PIG Isoform 1 of BCL2 like 13 OS=Sus scrofa OX=9823 GN=BCL2L13 PE=1 SV=2 CANONICAL=A0A5G2QSZ0-1" }, "locus": { "chromosome": "5", "start_pos": 69841778, "end_pos": 69789512, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090353.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090353.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061285.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061285.2" } ] } }, { "isoform_ac": "A0A5G2QTR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0/entry#A0A5G2QTR0-1", "sequence": { "sequence": "MASTTVPLGFHYETKYVVLSYLGLLSQEKLQEHLSLPQGQQDIASQPLDPEVLLKVKTEIEEELKSLDKEISEDFGASDFATTNALGVNKTWSRTFGCFAAVWCDIPGGPRRRVHHSTRWLGHCL", "length": 125, "header": "tr|A0A5G2QTR0-1|A0A5G2QSZ0_PIG Computationally mapped isoform of BCL2 like 13 OS=Sus scrofa OX=9823 GN=BCL2L13 PE=1 SV=1 CANONICAL=A0A5G2QSZ0-1" }, "locus": { "chromosome": "5", "start_pos": 69840994, "end_pos": 69789507, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088436.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088436.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065380.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065380.1" } ] } }, { "isoform_ac": "A0A5G2R5A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0/entry#A0A5G2R5A3-1", "sequence": { "sequence": "MKQSMSFSATWDSSLRRSCRNIFPYPKQDIASQPLDPEVLLKVKTEIEEELKSLDKEISEAFTSTGFDRHTSPVFSPANPESSLEDCLAHLGEKASQELKVPLLGALQVLLSRPVTYQAYRECTLETTVHASGWNKILVPLILLRQMLLELTRRGQEPLGALLQFGVTYLEDHAAEYIIQQGGWGTVFNLESEDEECPAGTAEDSNDIYILPSDSSAHVSPPESPTAAASWQAESLPVSLSASQSWHTESMPVSLGPESWQQVTVDPEEVKSLDSNGAGEKSENNSSNSDIVHVEKEEIPEGVEEAAMAARALPAGELPEVAPGAREPSLPRITAPSLTEAMGPDVEVTAIERVSPTTSVFVELGEEEAEAEPADLEQVGGPVLEPPAPLTSQEGVDGRGRGLRAGPPVASDQKAGLPYEGKSILLFGGAAAVAILAVAVGVALALRRK", "length": 449, "header": "tr|A0A5G2R5A3-1|A0A5G2R5A3_PIG Computationally mapped isoform of BCL2 like 13 OS=Sus scrofa OX=9823 GN=BCL2L13 PE=1 SV=1 CANONICAL=A0A5G2QSZ0-1" }, "locus": { "chromosome": "5", "start_pos": 69841778, "end_pos": 69789543, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068418.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068418.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069355.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069355.1" } ] } }, { "isoform_ac": "A0A5G2RGU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0/entry#A0A5G2RGU6-1", "sequence": { "sequence": "MASTTVPLGFHYETKYVVLSYLGLLSQEKLQEHLSLPQDFGASDFATTNALGVNKTWSRTFGCFAAVWCDIPGGPRRRVHHSTRWLGHCL", "length": 90, "header": "tr|A0A5G2RGU6-1|A0A5G2QSZ0_PIG Computationally mapped isoform of BCL2 like 13 OS=Sus scrofa OX=9823 GN=BCL2L13 PE=1 SV=1 CANONICAL=A0A5G2QSZ0-1" }, "locus": { "chromosome": "5", "start_pos": 69840994, "end_pos": 69789507, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089357.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089357.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074288.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074288.1" } ] } }, { "isoform_ac": "A0A5G2RKB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0/entry#A0A5G2RKB0-1", "sequence": { "sequence": "MASTTVPLGFHYETKYVVLSYLGLLSQEKLQEHLSLPQGQQDIASQPLDPEVLLKVKTEIEEELKSLDKEISEAFTSTGFDRHTSPVFSPANPESSLEDCLAHLGEKASQELKVPLLGALQVLLSRPVTYQAYRECTLETTVHASGWNKILVPLILLRQMLLELTRRGQEPLGALLQFGVTYLEDHAAEYIIQQGGWGTVFNLESEDEECPAGTAEDSNDIYILPSDSSAHVSPPESPTAAASWQAESLPVSLSASQSWHTESMPVSLGPESWQQVTVDPEEVKSLDSNGAGEKSENNSSNSDIVHVEKEEIPEGVEEAAMAARALPAGELPEVAPGAREPSLPRITAPSLTEAMGPDVEVTAIERVSPTTSVFVELGEEEAEAEPADLEQVGGPVLEPPAPLTSQEGVDGRGRGLRAGPPVASDQKAGLPYEGKSILLFGGAAAVAILAVAVGVALALRRK", "length": 462, "header": "tr|A0A5G2RKB0-1|A0A5G2RKB0_PIG Computationally mapped isoform of BCL2 like 13 OS=Sus scrofa OX=9823 GN=BCL2L13 PE=1 SV=1 CANONICAL=A0A5G2QSZ0-1" }, "locus": { "chromosome": "5", "start_pos": 69841778, "end_pos": 69789507, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077265.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077265.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072497.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072497.1" } ] } }, { "isoform_ac": "A0A8W4FLY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0/entry#A0A8W4FLY1-1", "sequence": { "sequence": "MASTTVPLGFHYETKYVVLSYLGLLSQEKLQEHLSLPQGQQDIASQPLDPEVLLKVKTEIEEELKSLDKEISEAFTSTGFDRHTSPVFSPANPESSLEDCLAHLGEKASQELKVPLLGALQVLLSRALSLTWSRRMRSALRAPQRTATTSTSYPATALHTSVPQNRQQQ", "length": 169, "header": "tr|A0A8W4FLY1-1|A0A5G2QSZ0_PIG Computationally mapped isoform of BCL2 like 13 OS=Sus scrofa OX=9823 GN=BCL2L13 PE=1 SV=1 CANONICAL=A0A5G2QSZ0-1" }, "locus": { "chromosome": "5", "start_pos": 69841113, "end_pos": 69789507, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103088.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103088.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080344.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080344.1" } ] } }, { "isoform_ac": "A0A8W4FP35-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0/entry#A0A8W4FP35-1", "sequence": { "sequence": "MASTTVPLGFHYETKYVVLSYLGLLSQEKLQEHLSLPQGQQDIASQPLDPEVLLKVKTEIEEELKSLDKEISEGHCL", "length": 77, "header": "tr|A0A8W4FP35-1|A0A5G2QSZ0_PIG Computationally mapped isoform of BCL2 like 13 OS=Sus scrofa OX=9823 GN=BCL2L13 PE=1 SV=1 CANONICAL=A0A5G2QSZ0-1" }, "locus": { "chromosome": "5", "start_pos": 69840994, "end_pos": 69789507, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103314.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103314.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080943.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080943.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 238, "start_aa": "Thr", "end_pos": 238, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr238", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ79", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ79" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YHC3-1", "protein_name": "BCL2 like 13", "gene_name": "BCL2L13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDAALIHLQLGSCSVTQRKPYVPHKSTNKLQANPMASSTAVPVGFHYETKYVVLSYLGLLSQEKPQEHPPASTQGTQQQLTAQHASEKEALEKIKIEIEEELKHLDEEILEAFTTTGFDCHTSPVFSPVNPESSIEDCLAHLGEKVSQELKEHLHKALESLLSKPVTYQEYRERTQETAAHASGWNKVLVPLVLLQQFLMELTRRGQEPLSALVNFGVTYLEDYSADYIIQQGGWGTVFSLESEEEEYPGLIAEDSNDIYILTSDNSGQVSPPESPTVTTSWQSESLPVSLSASQSWHTESLPVSLGPESWQQVAMDPEEVKSLDSNGGAEERSENNSSNSDIVHVEKEEIPEGIEEAVVSAVAAETVQAAFPETPASLQEVKPQAEIVAVEKAHPSARRTKQEEKGKVAEELVEPEIPALSKPVPKLTPSEGKATPEPEKILLPGEKKVGKEGPLEEIEEKSSAAEEKPILLPEGKSILLYGGAAAVAILAVAVGVALALRKK", "length": 504 }, "evidence": [ { "id": "A0A5G2QSZ0", "url": "https://omabrowser.org/oma/group/A0A5G2QSZ0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZT71-1", "protein_name": "Bcl2-like 13", "gene_name": "Bcl2l13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASSSSSTTVPLGFHYETKYVVLSYLGLLSQEKQQGPSPQGSQLDVAPQSLNPEVLLKIKSEIEEELKSLDKEVSEAFTSTGFDCHTSPVFSPANPESSVEDCLAQLGERVSRDLSEPLQKALQMILSQPVTYEAYRECTVETAVHASGWNKILVPLVLLQQMLLELARRGQEPLSTLLQFGVMYLEEHGAEFIIQQGGWGTVFSLESEEEEFPGIIAEDSNDIYILPSDNSGQVSPPESPTVTTSWQSESLPVSLSASQSWHTESLPVSLGPESWQQIAMDPEEVKSLDSSGAGEKSENNSSNSDIVHVEKEEVPEEAFPGATGPLLPQVTPMEASEMMRVEKTSPTPSVFVELGEEDLEVVTVRPDAVEGAAQLSEERSGRRRKSHTGEAIAARGTKSGLPAEGKAVLLFGGAAAVALLAVAVGVALALRKK", "length": 434 }, "evidence": [ { "id": "A0A5G2QSZ0", "url": "https://omabrowser.org/oma/group/A0A5G2QSZ0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HQ88-1", "protein_name": "Bcl-2-like protein 13 isoform X1", "gene_name": "Bcl2l13", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASSTTVPLGFHYETKYVVLSYLGLLSQGKQEGPSSQGVQLDVPPQSLDPEVLLKVKSEIEEELKSLDKEVSEAFTSTGFDCHTSPVFSPANPESSIEDCLAHLGERVSRDLKEPLNKALQVILSQPVTYQAYRECTVETAVHASGWNKILVPLVLLQQMLLELTRRGQEPLSTLLQFGVTYLEDHAAEFIIQQGGWGTVFSLESEEEEYPGIIAEDSNDIYILPSDNSGQVSPPESPTVTTSWQSESLPVSLSASQSWHTESLPVSLGPESWQQIAMDPEEVKSLDSSGAGEKSENNSSNSDIVHVEKEEVPEEAFPGAAAPLLPQTTAKEATEMRVEKGSPTPSVFAEFGEEELEAAAVRPAALEGAEQAVQLSAEGAGSRKESHTGEPTTAGAAKGAMPSEGKAVLLFGGAAAVAILAVAVGVALALRKK", "length": 433 }, "evidence": [ { "id": "A0A5G2QSZ0", "url": "https://omabrowser.org/oma/group/A0A5G2QSZ0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P59017-1", "protein_name": "Bcl-2-like protein 13", "gene_name": "Bcl2l13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSTTASLGFHYETKYVVLSYLGLLSQEKQQGPSPPGVQLDVAPQSLNPEVLLKLKSEIEEELKTLDKEVSEAFTSTGFDCHTSPVFSPANPESSIEDCLAHLGERVSQDLKEPLQKALQTILSQPVTYEAYRECTVETAVHASGWNKLLVPLVLLQHLLLELTRRGQEPLRMLLQFGVMYLEEHAAEFIIQQGGWGSVFSLEPEEEEYPGIIAEDSNDIYILPSDNSGQVSPPESPTVTTSWQSESLPVSLSASQSWHTESLPVSLGPESWQQIAMDPEEVKSLDSSGAGEKSENNSSNSDIVHVEKEEVPEEAFPGAAAPLLTQVPTVEAPEMMRAEKTSPTPSVFVELGEEELEAVTARPEAVERAEGAAQLSEERAGSRKKSHTGEAAAVRGAKSGLPAEGKAVLLFGGAAAVAILAVAVGVALALRRK", "length": 434 }, "evidence": [ { "id": "A0A5G2QSZ0", "url": "https://omabrowser.org/oma/group/A0A5G2QSZ0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BXK5-1", "protein_name": "Bcl-2-like protein 13", "gene_name": "BCL2L13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASSSTVPLGFHYETKYVVLSYLGLLSQEKLQEQHLSSPQGVQLDIASQSLDQEILLKVKTEIEEELKSLDKEISEAFTSTGFDRHTSPVFSPANPESSMEDCLAHLGEKVSQELKEPLHKALQMLLSQPVTYQAFRECTLETTVHASGWNKILVPLVLLRQMLLELTRRGQEPLSALLQFGVTYLEDYSAEYIIQQGGWGTVFSLESEEEEYPGITAEDSNDIYILPSDNSGQVSPPESPTVTTSWQSESLPVSLSASQSWHTESLPVSLGPESWQQIAMDPEEVKSLDSNGAGEKSENNSSNSDIVHVEKEEVPEGMEEAAVASVVLPARELQEALPEAPAPLLPHITATSLLGTREPDTEVITVEKSSPATSLFVELDEEEVKAATTEPTEVEEVVPALEPTETLLSEKEINAREESLVEELSPASEKKPVPPSEGKSRLSPAGEMKPMPLSEGKSILLFGGAAAVAILAVAIGVALALRKK", "length": 485 }, "evidence": [ { "id": "A0A5G2QSZ0", "url": "https://omabrowser.org/oma/group/A0A5G2QSZ0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0" } ], "pmid": "" }, { "name": "regulation of apoptotic process", "id": "GO:0042981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 297, "end_pos": 299, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSZ0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 461, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSZ0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSZ0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QSZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ0" }, { "id": "PF00452", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00452" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Bcl-2 Bcl-2 homology region 1-3", "eco_id": "ECO_0000259", "start_pos": 100, "end_pos": 196, "start_aa": "Leu", "end_aa": "Trp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 238 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 296, "end_pos": 298 }, { "start_pos": 297, "end_pos": 299 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A5G2QTS3-1", "uniprot_ac": "A0A5G2QTS3", "uniprot_id": "A0A5G2QTS3_PIG", "mass": { "chemical_mass": 161423.0, "monoisotopic_mass": 161423.0 }, "refseq": { "ac": "XP_001925162", "name": "membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925162" }, "gene_names": [ { "name": "MAGI3", "type": "recommended", "evidence": [ { "id": "A0A5G2QTS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3" } ] }, { "name": "MAGI3", "type": "synonym", "evidence": [ { "id": "XP_001925162", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925162" } ] } ], "protein_names": [ { "name": "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3", "type": "recommended", "evidence": [ { "id": "A0A5G2QTS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3/entry#names_and_taxonomy" } ] }, { "name": "Membrane-associated guanylate kinase inverted 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QTS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3/entry#names_and_taxonomy" } ] }, { "name": "membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001925162", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925162" } ] } ], "function": [ { "annotation": "Acts as a scaffolding protein at cell-cell junctions, thereby regulating various cellular and signaling processes. Cooperates with PTEN to modulate the kinase activity of AKT1. Its interaction with PTPRB and tyrosine phosphorylated proteins suggests that it may link receptor tyrosine phosphatase with its substrates at the plasma membrane. In polarized epithelial cells, involved in efficient trafficking of TGFA to the cell surface. Regulates the ability of LPAR2 to activate ERK and RhoA pathways. Regulates the JNK signaling cascade via its interaction with FZD4 and VANGL2.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZLH9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLH9#function" }, { "database": "UniProtKB", "id": "ARBA00056578", "url": "https://www.uniprot.org/uniprotkb/ARBA00056578#function" }, { "database": "UniProtKB", "id": "A0A287BIU8", "url": "https://www.uniprot.org/uniprotkb/A0A287BIU8#function" }, { "database": "UniProtKB", "id": "A0A287A5B0", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B0#function" }, { "database": "UniProtKB", "id": "A0A5G2QTS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MAGI3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3", "locus": { "chromosome": "4", "start_pos": 106882435, "end_pos": 107120035, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006767", "url": "https://www.ensembl.org/id/ENSSSCG00000006767" } ] } } ], "crossref": [ { "id": "A0A5G2QTS3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTS3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006767", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006767", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00201", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00201", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06730", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06730", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06731", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06731", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06732", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06732", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06733", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06733", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06734", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06734", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06735", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06735", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153223", "url": "https://www.ncbi.nlm.nih.gov/gene/100153223", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008144", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008144", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020590", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020590", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153223", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153223", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PEAKYQG", "url": "https://omabrowser.org/oma/group/PEAKYQG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BIU8", "url": "https://www.orthodb.org/?gene=A0A287BIU8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QTS3", "url": "https://www.orthodb.org/?gene=A0A5G2QTS3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10316", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10316", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10316:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10316:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00397", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00397", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00625", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00625", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001925162", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925162", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZLH9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLH9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5B0", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5B0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5B0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3P9", "url": "https://www.uniprot.org/uniprotkb/A0A287B3P9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3P9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3P9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIU8", "url": "https://www.uniprot.org/uniprotkb/A0A287BIU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIU8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKTLKKKKHWLSKVQECAVSWAGPPGDLGSEIRGGAERGEFPYLGRLREEPGGGTCCVVSGKAPSPGDVLLEVNGTPVSGLTNRDTLAVIRHFREPIRLKTVKPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCTTRAPRDGEVPGVDYNFISVEQFKALEESGALLESGTYDGNFYGTPKPPAEPSPFQPDPVDQVLFDNEFDTESQRKRTTSVSKMERMDSSLPEEEEDEDKEAVNGSGNAENRERHSEASDWMKTVPSYNQTNSSMDFRNYMMRDENLEPLPKNWEMAYTDTGMIYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHLNQKTQFENPVEEAKRKKQLGQADPGASKPDVEKSHFTRDPSQLKGILVRASLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGNCVLGHTHADVVQMFQLVPVNQYVNLTLCRGYPLPDDNEDPVVDIVAATPVINGQPLTKGETCMSTQEFKSGAVILDQNGKSGHTLISDRLNGPVDLSEQRASMASSGSSQPELVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMKTEKKENSGSLEAINEPIPQPMPFPPSIIRSGSPKLDPSEVYLKSKTLYEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGIPVKGKSHKQVLDLMTTAARNGHVLLTVRRKIFYGEKQPEDDSSQAFLSTQNGSPRLNRAEVPARPAPQEAYDVVLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGSPADRCGKLKVGDHISAVNGQSIVELSHDNIVQLIKDAGVTVTLTVVAEEEHLGPPSGTNSARQSPALQHRPMGQSQANHLPGDRSATEGEVGKDVPTSYRHSWSDHKHLAQPDTATISVVGGRHNQSLGCYPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVLLLLRPGTGLIPDHGDWDVNNPSSSNVIYDEQSSFPPSSHSASIFEESQVPVTEESLMRVQICEKAEELKDIVPEKKSTLNEHQSDIKHQSLLHKNVNKRDPPNSHGHGDKKNLLKAENGVTQRGRSASPKKSASRHSEEHLEKIPSPLKNDPKRRPRDRSLSPRKGENKSCQTGPDHCRKGRGRSSSPKQQPKTEGSKDQSSMSRRAGGHASDHAEQIADRKERSGVTRKDATQSQLGKSRARSPEKKSKRMEEKSLPSRKTNNISSRVVSENDKGKKATLGETSSSKDETGENVKRAEKKLKQQPEERMVTNKIEDHKGKELETADKNKESRGFKPESGSPAKKTPITPGPWKVPSASRATGTTGVAEKRL", "length": 1468, "header": "tr|A0A5G2QTS3-1|A0A5G2QTS3_PIG Isoform 1 of Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 OS=Sus scrofa OX=9823 GN=MAGI3 PE=1 SV=2 CANONICAL=A0A5G2QTS3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3/entry#A0A286ZLH9-1", "sequence": { "sequence": "MSKTLKKKKHWLSKVQECAVSWAGPPGDLGSEIRGGAERGEFPYLGRLREEPGGGTCCVVSGKAPSPGDVLLEVNGTPVSGLTNRDTLAVIRHFREPIRLKTVKPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCTTRAPRDGEVPGVDYNFISVEQFKALEESGALLESGTYDGNFYGTPKPPAEPSPFQPDPVDQVLFDNEFDTESQRKRTTSVSKMERMDSSLPEEEEDEDKEAVNGSGNAENRERHSEASDWMKTVPSYNQTNSSMDFRNYMMRDENLEPLPKNWEMAYTDTGMIYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHLNQKTQFENPVEEAKRKKQLGQADPGASKPDVEKSHFTRDPSQLKGILVRASLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGNCVLGHTHADVVQMFQLVPVNQYVNLTLCRGYPLPDDNEDPVVDIVAATPVINGQPLTKGETCMSTQEFKSGAVILDQNGKSGHTLISDRLNGPVDLSEQRASMASSGSSQPELVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMKTEKKENSGSLEAINEPIPQPMPFPPSIIRSGSPKLDPSEVYLKSKTLYEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGIPVKGKSHKQVLDLMTTAARNGHVLLTVRRKIFYGEKQPEDDSSQAFLSTQNGSPRLNRAEVPARPAPQEAYDVVLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGSPADRCGKLKVGDHISAVNGQSIVELSHDNIVQLIKDAGVTVTLTVVAEEEHLGPPSGTNSARQSPALQHRPMGQSQANHLPGDRSATEGEVGKDVPTSYRHSWSDHKHLAQPDTATISVVGGRHNQPWLLPSGAGARPPGLWLQPQGREGVQHGALHPASRRGRSCDWDVNNPSSSNVIYDEQSSFPPSSHSASIFEESQVPVTEESLMRVQICEKAEELKDIVPEKKSTLNEHQSDIKHQSLLHKNVNKRDPPNSHGHGDKKNLLKAENGVTQRGRSASPKKSASRHSEEHLEKIPSPLKNDPKRRPRDRSLSPRKGENKSCQTGPDHCRKGRGRSSSPKQQPKTEGSKDQSSMSRRAGGHASDHAEQIADRKERSGVTRKDATQSQLGKSRARSPEKKSKRMEEKSLPSRKTNNISSRVVSENDKGKKATLGETSSSKDETGENVKRAEKKLKQQPEERMVTNKIEDHKGKELETADKNKESRGFKPESGSPAKKTPITPGPWKVPSASRATGTTGVAEKRL", "length": 1413, "header": "tr|A0A286ZLH9-1|A0A5G2QTS3_PIG Computationally mapped isoform of Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 OS=Sus scrofa OX=9823 GN=MAGI3 PE=1 SV=2 CANONICAL=A0A5G2QTS3-1" }, "locus": { "chromosome": "4", "start_pos": 107119488, "end_pos": 106882510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050793.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050793.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032473.3", "url": "https://www.ensembl.org/id/ENSSSCP00000032473.3" } ] } }, { "isoform_ac": "A0A287A5B0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3/entry#A0A287A5B0-1", "sequence": { "sequence": "MSKTLKKKKHWLSKVQECAVSWAGPPGDLGSEIRGGAERGEFPYLGRLREEPGGGTCCVVSGKAPSPGDVLLEVNGTPVSGLTNRDTLAVIRHFREPIRLKTVKPGNFYGTPKPPAEPSPFQPDPVDQVLFDNEFDTESQRKRTTSVSKMERMDSSLPEEEEDEDKEAVNGSGNAENRERHSEASDWMKTVPSYNQTNSSMDFRNYMMRDENLEPLPKNWEMAYTDTGMIYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHLNQKTQFENPVEEAKRKKQLGQADPGASKPDVEKSHFTRDPSQLKGILVRASLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGNCVLGHTHADVVQMFQLVPVNQYVNLTLCRGYPLPDDNEDPVVDIVAATPVINGQPLTKGETCMSTQEFKSGAVILDQNGKSGHTLISDRLNGPVDLSEQRASMASSGSSQPELVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMKTEKKENSGSLEAINEPIPQPMPFPPSIIRSGSPKLDPSEVYLKSKTLYEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGIPVKGKSHKQVLDLMTTAARNGHVLLTVRRKIFYGEKQPEDDSSQAFLSTQNGSPRLNRAEVPARPAPQEAYDVVLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGSPADRCGKLKVGDHISAVNGQSIVELSHDNIVQLIKDAGVTVTLTVVAEEEHLGPPSGTNSARQSPALQHRPMGQSQANHLPGDRSATEGEVGKDVPTSYRHSWSDHKHLAQPDTATISVVGGRHNQSLGCYPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVLLLLRPGTGLIPDHGDWDVNNPSSSNVIYDEQSSFPPSSHSASIFEESQVPVTEESLMRVQICEKAEELKDIVPEKKSTLNEHQSDIKHQSLLHKNVNKRDPPNSHGHGDKKNLLKAENGVTQRGRSASPKKSASRHSEEHLEKIPSPLKNDPKRRPRDRSLSPRKGENKSCQTGPDHCRKGRGRSSSPKQQPKTEGSKDQSSMSRRAGGHASDHAEQIADRKERSGVTRKDATQSQLGKSRARSPEKKSKRMEEKSLPSRKTNNISSRVVSENDKGKKATLGETSSSKDETGENVKRAEKKLKQQPEERMVTNKIEDHKGKELETADKNKESRGFKPESGSPAKKTPITPGPWKVPSASRATGTTGVAEKRL", "length": 1389, "header": "tr|A0A287A5B0-1|A0A5G2QTS3_PIG Computationally mapped isoform of Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 OS=Sus scrofa OX=9823 GN=MAGI3 PE=1 SV=1 CANONICAL=A0A5G2QTS3-1" }, "locus": { "chromosome": "4", "start_pos": 107119488, "end_pos": 106882510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043371.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043371.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038987.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038987.1" } ] } }, { "isoform_ac": "A0A287B3P9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3/entry#A0A287B3P9-1", "sequence": { "sequence": "NFHMPRVQPEKAGKKDKKNRERHSEASDWMKTVPSYNQTNSSMDFRNYMMRDENLEPLPKNWEMAYTDTGMIYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHLNQKTQFENPVEEAKRKKQLGQADPGASKPDVEKSHFTRDPSQLKGILVRASLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGNCVLGHTHADVVQMFQLVPVNQYVNLTLCRGYPLPDDNEDPVVDIVAATPVINGQPLTKGETCMSTQEFKSGAVILDQNGKSGHTLISDRLNGPVDLSEQRASMASSGSSQPELVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMKTEKKENSGSLEAINEPIPQPMPFPPSIIRSGSPKLDPSEVYLKSKTLYEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGIPVKGKSHKQVLDLMTTAARNGHVLLTVRRKIFYGEKQPEDDSSQAFLSTQNGSPRLNRAEVPARPAPQEAYDVVLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGSPADRCGKLKVGDHISAVNGQSIVELSHDNIVQLIKDAGVTVTLTVVAEEEHLGPPSGTNSARQSPALQHRPMGQSQANHLPGDRSATEGEVGKDVPTSYRHSWSDHKHLAQPDTATISVVGGRHNQSLGCYPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVLLLLRPGTGLIPDHGDWDVNNPSSSNVIYDEQSSFPPSSHSASIFEESQVPVTEESLMRVQICEKAEELKDIVPEKKSTLNEHQSDIKHQSLLHKNVNKRDPPNSHGHGDKKNLLKAENGVTQRGRSASPKKSASRHSEEHLEKIPSPLKNDPKRRPRDRSLSPRKGENKSCQTGPDHCRKGRGRSSSPKQQPKTEGSKDQSSMSRRAGGHASDHAEQIADRKERSGVTRKDATQSQLGKSRARSPEKKSKRMEEKSLPSRKTNNISSRVVSENDKGKKATLGETSSSKDETGENVKRAEKKLKQQPEERMVTNKIEDHKGKELETADKNKESRGFKPESGSPAKKTPITPGPWKVPSASRATGTTGVAEKRL", "length": 1231, "header": "tr|A0A287B3P9-1|A0A287B3P9_PIG Computationally mapped isoform of Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 OS=Sus scrofa OX=9823 GN=MAGI3 PE=1 SV=2 CANONICAL=A0A5G2QTS3-1" }, "locus": { "chromosome": "4", "start_pos": 106957713, "end_pos": 106882510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061767.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061767.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050719.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050719.2" } ] } }, { "isoform_ac": "A0A287BIU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3/entry#A0A287BIU8-1", "sequence": { "sequence": "MSKTLKKKKHWLSKVQECAVSWAGPPGDLGSEIRGGAERGEFPYLGRLREEPGGGTCCVVSGKAPSPGDVLLEVNGTPVSGLTNRDTLAVIRHFREPIRLKTVKPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCTTRAPRDGEVPGVDYNFISVEQFKALEESGALLESGTYDGNFYGTPKPPAEPSPFQPDPVDQVLFDNEFDTESQRKRTTSVSKMERMDSSLPEEEEDEDKEAVNGSGNAENRERHSEASDWMKTVPSYNQTNSSMDFRNYMMRDENLEPLPKNWEMAYTDTGMIYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHLNQKTQFENPVEEAKRKKQLGQADPGASKPDVEKSHFTRDPSQLKGILVRASLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGNCVLGHTHADVVQMFQLVPVNQYVNLTLCRGYPLPDDNEDPVVDIVAATPVINGQPLTKGETCMSTQEFKSGAVILDQNGKSGHTLISDRLNGPVDLSEQRASMASSGSSQPELVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMKTEKKENSGSLEAINEPIPQPMPFPPSIIRSGSPKLDPSEVYLKSKTLYEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGIPVKGKSHKQVLDLMTTAARNGHVLLTVRRKIFYGEKQPEDDSSQAFLSTQNGSPRLNRAEVPARPAPQEAYDVVLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGSPADRCGKLKVGDHISAVNGQSIVELSHDNIVQLIKDAGVTVTLTVVAEEEHLGPPSGTNSARQSPALQHRPMGQSQANHLPGDRSATEGEVGKDVPTSYRHSWSDHKHLAQPDTATISVVGGRHNQSLGCYPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVLLLLRPGTGLIPDHGLAPSGLCSYVKPEQH", "length": 1125, "header": "tr|A0A287BIU8-1|A0A5G2QTS3_PIG Computationally mapped isoform of Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 OS=Sus scrofa OX=9823 GN=MAGI3 PE=1 SV=2 CANONICAL=A0A5G2QTS3-1" }, "locus": { "chromosome": "4", "start_pos": 107119488, "end_pos": 106884234, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037874.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037874.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056460.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056460.2" } ] } }, { "isoform_ac": "A0A5G2QTS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3/entry#A0A5G2QTS3-1", "sequence": { "sequence": "MSKTLKKKKHWLSKVQECAVSWAGPPGDLGSEIRGGAERGEFPYLGRLREEPGGGTCCVVSGKAPSPGDVLLEVNGTPVSGLTNRDTLAVIRHFREPIRLKTVKPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCTTRAPRDGEVPGVDYNFISVEQFKALEESGALLESGTYDGNFYGTPKPPAEPSPFQPDPVDQVLFDNEFDTESQRKRTTSVSKMERMDSSLPEEEEDEDKEAVNGSGNAENRERHSEASDWMKTVPSYNQTNSSMDFRNYMMRDENLEPLPKNWEMAYTDTGMIYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHLNQKTQFENPVEEAKRKKQLGQADPGASKPDVEKSHFTRDPSQLKGILVRASLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGNCVLGHTHADVVQMFQLVPVNQYVNLTLCRGYPLPDDNEDPVVDIVAATPVINGQPLTKGETCMSTQEFKSGAVILDQNGKSGHTLISDRLNGPVDLSEQRASMASSGSSQPELVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMKTEKKENSGSLEAINEPIPQPMPFPPSIIRSGSPKLDPSEVYLKSKTLYEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGIPVKGKSHKQVLDLMTTAARNGHVLLTVRRKIFYGEKQPEDDSSQAFLSTQNGSPRLNRAEVPARPAPQEAYDVVLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGSPADRCGKLKVGDHISAVNGQSIVELSHDNIVQLIKDAGVTVTLTVVAEEEHLGPPSGTNSARQSPALQHRPMGQSQANHLPGDRSATEGEVGKDVPTSYRHSWSDHKHLAQPDTATISVVGGRHNQSLGCYPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVLLLLRPGTGLIPDHGDWDVNNPSSSNVIYDEQSSFPPSSHSASIFEESQVPVTEESLMRVQICEKAEELKDIVPEKKSTLNEHQSDIKHQSLLHKNVNKRDPPNSHGHGDKKNLLKAENGVTQRGRSASPKKSASRHSEEHLEKIPSPLKNDPKRRPRDRSLSPRKGENKSCQTGPDHCRKGRGRSSSPKQQPKTEGSKDQSSMSRRAGGHASDHAEQIADRKERSGVTRKDATQSQLGKSRARSPEKKSKRMEEKSLPSRKTNNISSRVVSENDKGKKATLGETSSSKDETGENVKRAEKKLKQQPEERMVTNKIEDHKGKELETADKNKESRGFKPESGSPAKKTPITPGPWKVPSASRATGTTGVAEKRL", "length": 1468, "header": "tr|A0A5G2QTS3-1|A0A5G2QTS3_PIG Isoform 1 of Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 OS=Sus scrofa OX=9823 GN=MAGI3 PE=1 SV=2 CANONICAL=A0A5G2QTS3-1" }, "locus": { "chromosome": "4", "start_pos": 107119488, "end_pos": 106882510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073436.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073436.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068331.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068331.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZLH9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLH9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153223", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153223", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IGT8-1", "protein_name": "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3", "gene_name": "magi3a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSKTLKKKKHWSSKVQECAVSWGNAEELCAVLEIRGGAEHGEFPHLGQVLSDALVCHVGRLPGPGDVLLEVNGTPVSGLTNRDTLAVIRHFREPLRLKTVKPGKVLNTDLRHYLSLQFQKGSLDHKLQQVIRDNLYLRTIPCTTRQPREGEVPGVDYNFISVGEFRVLEESGLLLESGTYDGNYYGTPKPPAEPSPVQPDLVDQVLFDEEFDAEVQRKRTTSVSKMDRKDSAAPEEEEEDERPPMVNGLTEHKEGPDWRKTVPSYTQSSSSMDFRNWNTMPRDDSQDPLPKNWEMAYTETGMVYFIDHNSKTTTWLDPRLAKKAKPPEKCEDGELPYGWEKIEDPQYGTYYVDHINQKTQFENPVQEAKKKLSQETSPTNQPTAAASAAVAAPAAAPSGEVGLRGFTRDPSQLQGAILRTTLKKSPQGFGFTIIGGDRPDEFLQVKNVLRDGPAAHDNKIASGDVIVDINGACVLGKTHADVVQMFQSIPVNQYVDMVLCRGYPLPEDTNSSEEGTGDIMTAMPGMDGQPIHLDGTAPLQDLHYMSADGRLPAAAMPNGRHPEAGESTLLQPELVSVPLVKGPGGFGFAIADCPLGQKVKMILDAQWCRGLLKGDVIKEINRQNVQTLSHAQVVDILKDLPVGSEVNVLVLRGGQTSPVKSLKPITPAMPITQKQDIITTSSISTDTPSPAEPAPQSLPFPPQLIRSSSPKLDPTELYLKSKAMQDSKPINTKELDVFIKRNQETGFGFRVLGGEGPDQPVYIGAIVPLGAAEKDGRLRAGDELICIDGVPVKGKSHKQVLELMTNAARNGQVMLTVRRKLTFQDREEDDGVYPPAPQALSLVNGSPKPSHVEVSGHSHPQPYDVTLQRKDNEGFGFVILTSKNKPPPGVIPHKIGRIIEGSPTDRSGHLKVGDRISAVNGQSIIDLSHNDIVQLIKEAGNAVTLTVVPEEGELWGKYLEHSGPPSGTSSAKQSPAIQHRAMGQQPASREDRNGVETEERKDSLGRVEYKALPQGEMGTVITSGIKQGCYPVELERGQRGFGFSLRGGKEYNMGLFILRLAEDGPALKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVLLLLRPGLGLVPDHNMQDLMTGPSANSPRYSASSEPSTPASPSFISHSPAVSPPPTEELLNTSYGQLHQHYRDAKQQTRKIDPSMPRDTNDNLAIPRKLDGKERSRSPKKTYPGEHEPRSSSPRKTKKDNIRQEMPQKAIDGLRSSSGRRHQDEDPAQKQDRAMEVSRGDSERYQRNKTAEPQKPHNESGTINRKDHRGLDSPRWDEDSKAAPSETPQNGGNPSAKKAPITPGPWKVPSSTRVQPPVHGV", "length": 1355 }, "evidence": [ { "id": "A0A5G2QTS3", "url": "https://omabrowser.org/oma/group/A0A5G2QTS3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V1A385-1", "protein_name": "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3", "gene_name": "MAGI3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSKTLRKKRHWLSKVQECVVSWGGPAGPDPELLHGGAERGEFPYLAGRLPTGAEGAPGPALLSGKAPAPGDVLLEVNGTPVSGLTHRDTLAVIRHFREPVRLKTVRPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCTTRAPRDGEVPGVDYNFIPVEQFKALEESGALLESGTYDGNFYGTPKPPAEPSPFQPDPVDQVLFDNDFDTESQRKRTTSVSKMQRMDSSLPEDEEEEEKEAVNGSGGIENKEKHSDSSDWMKPVPSYNQTSSSMDFRNYMSRDETLEPLPKNWEMAYTDTGMIYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHINQKTQFENPVLEAKRKKQLGQTDGGPSKSVPEKSLFTRDPSQLIGALIRTSLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGRIAPGDVIVDINGNCVLGHTHADVVQMFQLVPVNQYVNMTLCRGYPLPDDNEDPVVDIVTATPIINGPPVTKGDICLTSQELIAGTVVLDQNGKTGPMLVNGRLNGPSMDTNEQRISVASSGGSQPELVTIPLVKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDVIKEICHQNVQSLTHLQVVEVLKQFPIGAEVPLLILRGGPPSPTKTGKMKDKQESSGSLEALSDAIPQPMPFPPTAVRSGSPKLDPSEVYLKSKTMYEDKPPNTRDLDVFLRKQESGFGFRVLGGDGPDQPIYIGAIIPLGAAEKDGRLRAADELMCIDGVPVKGKSHKQVLDLMTSAARNGQVLLTVRRKIFFGGEKQAEEEESQAVVTQNSSPRLNRAEFATQQSPEVYDVCLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIDGSPADQCGKLKVGDRISAVNGQSIVELSHDSIVQLIKDAGHVVTLTVVAEEEHRGPPSGTNSAKQSPAPQHRPLGPAQSSASSTDRGATEGEAGKEVSNSYRLSWPEHKHLAQPDAGSASGVGSRHSQTQNSGCFPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAVKDGRVHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVLLLLRPGTGLIPDHSDWDSYNPSSSNVIYEEQSPLSSSSHSASPPEMCYFPVPGEALRKVQLSEKLEQAKNTVPEKISTLTENQFEMKPPSSPQRTKNRWDLPSSTGFEVTKGTLELGTRKDRSASQEKFGAAEGHHPTGLHSPRKSDADKTHSNLPRKPTETGMSSSNRKQHSSGDQGASASPQKLLSKGCAEVVGRLQEHHDRTGGDKTTAEQLRGGSGKTGVTRKDTKQKVSGKKELWFSERKYATLDEGRFPFGDSRRNRAEDEKTRKLNSGEPGSSRSKTSSLSDIPLLSMEKLRRLEVQEIDVLNSQRGDGHGELPDETKDDGIPKPESSSPVKKTPITPGPWRVPSACKVTNTACEAEKRV", "length": 1466 }, "evidence": [ { "id": "A0A5G2QTS3", "url": "https://omabrowser.org/oma/group/A0A5G2QTS3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5TCQ9-4", "protein_name": "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3", "gene_name": "MAGI3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSKTLKKKKHWLSKVQECAVSWAGPPGDFGAEIRGGAERGEFPYLGRLREEPGGGTCCVVSGKAPSPGDVLLEVNGTPVSGLTNRDTLAVIRHFREPIRLKTVKPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCTTRAPRDGEVPGVDYNFISVEQFKALEESGALLESGTYDGNFYGTPKPPAEPSPFQPDPVDQVLFDNEFDAESQRKRTTSVSKMERMDSSLPEEEEDEDKEAINGSGNAENRERHSESSDWMKTVPSYNQTNSSMDFRNYMMRDETLEPLPKNWEMAYTDTGMIYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHLNQKTQFENPVEEAKRKKQLGQVEIGSSKPDMEKSHFTRDPSQLKGVLVRASLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGNCVLGHTHADVVQMFQLVPVNQYVNLTLCRGYPLPDDSEDPVVDIVAATPVINGQSLTKGETCMNPQDFKPGAMVLEQNGKSGHTLTGDGLNGPSDASEQRVSMASSGSSQPELVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMKTDKKENAGSLEAINEPIPQPMPFPPSIIRSGSPKLDPSEVYLKSKTLYEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGIPVKGKSHKQVLDLMTTAARNGHVLLTVRRKIFYGEKQPEDDSSQAFISTQNGSPRLNRAEVPARPAPQEPYDVVLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGSPADRCGKLKVGDHISAVNGQSIVELSHDNIVQLIKDAGVTVTLTVIAEEEHHGPPSGTNSARQSPALQHRPMGQSQANHIPGDRSALEGEIGKDVSTSYRHSWSDHKHLAQPDTAVISVVGSRHNQNLGCYPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVLLLLRPGTGLIPDHGDWDINNPSSSNVIYDEQSPLPPSSHFASIFEESHVPVIEESLRVQICEKAEELKDIVPEKKSTLNENQPEIKHQSLLQKNVSKRDPPSSHGHSNKKNLLKVENGVTRRGRSVSPKKPASQHSEEHLDKIPSPLKNNPKRRPRDQSLSPSKGENKSCQVSTRAGSGQDQCRKSRGRSASPKKQQKIEGSKAPSNAEAKLLEGKSRRIAGYTGSNAEQIPDGKEKSDVIRKDAKQNQLEKSRTRSPEKKIKRMVEKSLPSKMTNKTTSKEVSENEKGKKVTTGETSSSNDKIGENVQLSEKRLKQEPEEKVVSNKTEDHKGKELEAADKNKETGRFKPESSSPVKKTLITPGPWKVPSGNKVTGTIGMAEKRQ", "length": 1481 }, "evidence": [ { "id": "A0A5G2QTS3", "url": "https://omabrowser.org/oma/group/A0A5G2QTS3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9EQJ9-1", "protein_name": "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3", "gene_name": "Magi3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSKTLKKKKHWLSKVQECAVSWAGPPGDLGAEIRGGAERGEFPYLGRLRDEAGGGGGTCCVVSGKAPSPGDVLLEVNGTPVSGLTNRDTLAVIRHFREPIRLKTVKPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCTTRAPRDGEVPGVDYNFISVEQFKALEESGALLESGTYDGNFYGTPKPPAEPSPFQPDPVDQVLFDNEFDTESQRKRTTSVSKMERMDSSLPEEEEDEDKEAVNGSGSMETREMHSETSDCWMKTVPSYNQTNSSMDFRNYMMRDENLEPLPKNWEMAYTDTGMIYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHLNQKTQFENPVEEAKRKKQLGQAEIHSAKTDVERAHFTRDPSQLKGVLVRASLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGNCVLGHTHADVVQMFQLVPVNQYVNLTLCRGYPLPDDSEDPVVDIVAATPVINGQSLTKGETCMNTQDFKLGAMVLDQNGKSGQILASDRLNGPSESSEQRASLASSGSSQPELVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPCSPTKTAKTKTDTKENSGSLETINEPIPQPMPFPPSIIRSGSPKLDPSEVYLKSKTLYEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGIPVKGKSHKQVLDLMTTAARNGHVLLTVRRKIFYGEKQPEDESHQAFSQNGSPRLNRAELPTRSAPQEAYDVTLQRKENEGFGFVILTSKSKPPPGVIPHKIGRVIDGSPADRCGGLKVGDHISAVNGQSIVDLSHDNIVQLIKDAGVTVTLTVVAEEEHHGPPSGTNSARQSPALQHRPMGQAQANHIPGDRIALEGEIGRDVCSSYRHSWSDHKHLAQPDTAVISVVGSRHNQSLGCYPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVLLLLRPGTGLIPDHGDWDTNSPSSSNVIYDEQPPPLPSSHSASTFEESHVPATEDSLTRVQICEKAEELKDTVQEKKSTLNGSQPEMKYQSVHKTMSKKDPPRGSGHGEKSRLKGENGVTRRGRSASPKKSVNRHSEEHLEKIPRPLKSDPKEKSRDRSLSPRKGESKGRLTIKAGSGQDPYRKDRGRSSSPKKQQKIGGNSLSNTEGKLSEAGSRRAAGHPRDSTEQLPDGREKSGVSRKDLKQSQPGKTRTKSPEKKSSKVDETSLPSKKTSSTAGRVVSEKEKGKKPTAGETSRETVEHTQISAKQLKQEAQEKTALGNADDHKGRESEVTDRCRERAGCTPQSSSLVKKAPITPGPWRVPRANKVTGTTGMADKQL", "length": 1476 }, "evidence": [ { "id": "A0A5G2QTS3", "url": "https://omabrowser.org/oma/group/A0A5G2QTS3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JK71-1", "protein_name": "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3", "gene_name": "Magi3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKTLKKKKHWLSKVQECAVSWAGPPGDLGAEIRGGAERGEFPYLGRLRDEPGGGGGTCCVVSGKAPSPGDVLLEVNGTPVSGLTNRDTLAVIRHFREPIRLKTVKPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYLITIPCTTRAPRDGEVPGVDYNFISVEQFKALEESGALLESGTYDGNFYGTPKPPAEPSPFQPDPVDQVLFDNEFDTESQRKRTTSVSKMERMDSSLPEEEEDEDKEAVNGSGSMETREMHSESSDCWMKTVPSYNQTNRSMDFRNYMMRDENLEPLPKNWEMAYTDTGTIYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIEDPQYGTYYVDHLNQKTQFENPVEEAKRKKQIGQAETHSAKTDVERAHFTRDPSQLKGVLVRASLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGPAAQDGKMAPGDVIVDINGNCVLGHTHADVVQMFQLVPVNQYVNLTLCRGYALPDDSEDPVVDIVAATPVINGQSLAKGEACMSTQDFKLGAMVLDQNGKSGKLLSSDRLNGPSDSNEQRASLASSGSSQPELVTIPLVKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPCSPTKTAKMKTDTKETSGSLETINEPTPQPMPFPPSIIRSGSPKLDPSEVYLKSKTLYEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGIPVKGKSHKQVLDLMTTAARNGHVLLTVRRKIFYGEKQPEDESPQAFSQSGSPRLNRTELPTRSAPQESYDVILQRKENEGFGFVILTSKSKPPPGVIPHKIGRVIDGSPADRCGRLKVGDHISAVNGQSIVDLSHDNIVQLIKDAGVTVTLTVVAEEEHHGPPSGTNSARQSPALQHRPMGQAQATHIPGDRTALEGEVGKDVCSSYRHSWSDHKHLAQPDTAVISVVGSRHSQSLGCYPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVLLLLRPGTGLIPDHGDWDIYSPSSSNVIYDEQPPPLPSSHSAATFEESHVPVTEDSLIRVQTCEKAEELKDTVQEKKSTLNGSQPEMKYQSIQKNVSKKDPSRSHGHGDKNLLKGENGVTRRGRSASPKKSVNRHSEEHLEKIPRPLRSDPKGKSRDRSLSPRKGENKGQVTIKAGSGQDPCRKDRGRSSSPRKQQKIGGNSLSNTEGKLSEAGSRRAAGLSSDSPEQLPEGKEKSGVSRKDLKLSQLGKNRTRSPEKRSSKVDEASLPSKKTSDTASRVVSEKEKGRKPGTGERSRDKTGESVQTSAKPLTQEAGEKMALSKASEVTDRGKERAGGAPESSSPVKKAPITPGPWRVPRANKVTGTAGMADKQL", "length": 1470 }, "evidence": [ { "id": "A0A5G2QTS3", "url": "https://omabrowser.org/oma/group/A0A5G2QTS3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3" } ], "pmid": "" }, { "name": "frizzled binding", "id": "GO:0005109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005109", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3" } ], "pmid": "" }, { "name": "bicellular tight junction", "id": "GO:0005923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005923", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1014, "end_pos": 1016, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1264, "end_pos": 1266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1360, "end_pos": 1362, "annotation": "n_glycosylation_sequon" }, { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" }, { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" }, { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 487, "end_pos": 489, "annotation": "n_glycosylation_sequon" }, { "start_pos": 629, "end_pos": 631, "annotation": "n_glycosylation_sequon" }, { "start_pos": 75, "end_pos": 77, "annotation": "n_glycosylation_sequon" }, { "start_pos": 830, "end_pos": 832, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTS3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1468, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTS3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTS3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QTS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3" }, { "id": "PS50052", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50052" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Guanylate kinase-like", "eco_id": "ECO_0000259", "start_pos": 114, "end_pos": 190, "start_aa": "Arg", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QTS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 106, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QTS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS3" }, { "id": "PS50020", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50020" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WW", "eco_id": "ECO_0000259", "start_pos": 293, "end_pos": 326, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1014, "end_pos": 1016 }, { "start_pos": 1264, "end_pos": 1266 }, { "start_pos": 1360, "end_pos": 1362 }, { "start_pos": 249, "end_pos": 251 }, { "start_pos": 274, "end_pos": 276 }, { "start_pos": 277, "end_pos": 279 }, { "start_pos": 487, "end_pos": 489 }, { "start_pos": 629, "end_pos": 631 }, { "start_pos": 75, "end_pos": 77 }, { "start_pos": 830, "end_pos": 832 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A5G2QWB1-1", "uniprot_ac": "A0A5G2QWB1", "uniprot_id": "A0A5G2QWB1_PIG", "mass": { "chemical_mass": 98830.0, "monoisotopic_mass": 98830.0 }, "refseq": {}, "gene_names": [ { "name": "WDR44", "type": "recommended", "evidence": [ { "id": "A0A5G2QWB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 44", "type": "recommended", "evidence": [ { "id": "A0A5G2QWB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDR44", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1", "locus": { "chromosome": "X", "start_pos": 97027050, "end_pos": 96950288, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035488", "url": "https://www.ensembl.org/id/ENSSSCG00000035488" } ] } } ], "crossref": [ { "id": "A0A5G2QWB1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWB1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035488", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035488", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006141", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006141", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040324", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040324", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14221", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14221", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14221:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14221:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A081", "url": "https://www.uniprot.org/uniprotkb/A0A287A081", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A081-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A081-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QST7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QST7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASESDTEEFFDAPEDVHLGGGYPVGSPGKVGTSTLKETENTAYKVGNESPVQELKQDVSKKIIESIIEESQKVLQLEDDSLDSRGKGHSDQATANPVVAETDLSNIPVLLAIDQVLQEGSQKAESQDVSEETEIESQKCFPSDDTCEKPVDETTKLTEISSAEQLNVPETETEMLNKEAVEVKESDVLEPASSHSLSTKDFAVVEEVAPAKPPRQLTPEPDIVASTKKPVPARPPPPTNFPPPRPPPPSRPAPPPRKKKSELEFEALKTPDLDVPKENITPDTLLTTSLASESTVKDSQPSLDLASATSGDKIVTAQENGKAPDGQTIAGEVMGPQRPRSNSGRELTDEEILASVMIKNLDTGEEIPLSLAEEKLPTGINPLTLHIMRRTKEYVSNDAAQSDDEEKLQSQQTDTDGGRLKQKTTQLKKFLGKSVKRAKHLAEEYGERAVNKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAAHGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTEGRVSPSPSQESLNSSKSDTDTGVCSGADEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFSYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLSLDMQSEKSEGNDKGEDAEVLDTMPSVASLTYGYS", "length": 890, "header": "tr|A0A5G2QWB1-1|A0A5G2QWB1_PIG Isoform 1 of WD repeat-containing protein 44 OS=Sus scrofa OX=9823 GN=WDR44 PE=4 SV=1 CANONICAL=A0A5G2QWB1-1" }, "isoforms": [ { "isoform_ac": "A0A287A081-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1/entry#A0A287A081-1", "sequence": { "sequence": "MASESDTEEFFDAPEDVHLGGGYPVGSPGKVGTSTLKETENTAYKVGNESPVQELKQDVSKKIIESIIEESQKVLQLEDDSLDSRGKGHSDQATANPVVAETDLSNIPVLLAIDQVLQEGSQKAESQDVSEETEIESQKCFPSDDTCEKPVDETTKLTEISSAEQLNVPETETEMLNKEAVEVKESDVLEPASSHSLSTKDFAVVEEVAPAKPPRQLTPEPDIVASTKKPVPARPPPPTNFPPPRPPPPSRPAPPPRKKKSELEFEALKTPDLDVPKENITPDTLLTTSLASESTVKDSQPSLDLASATSGDKIVTAQENGKAPDGQTIAGEVMGPQRPRSNSGRELTDEEILASVMIKNLDTGEEIPLSLAEEKLPTGINPLTLHIMRRTKEYVSNDAAQSDDEEKLQSQQTDTDGGRLKQKTTQLKKFLGKSVKRAKHLAEEYGERAVNKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAAHGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTEGRVSPSPSQESLNSSKSDTDTGVCSGADEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFSYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLSLDMQSEKSEGNDKGEDAEVLDTMPSGIMKTDNTEVLLSADFTGAIKVFINKRKNVS", "length": 878, "header": "tr|A0A287A081-1|A0A5G2QWB1_PIG Computationally mapped isoform of WD repeat-containing protein 44 OS=Sus scrofa OX=9823 GN=WDR44 PE=4 SV=1 CANONICAL=A0A5G2QWB1-1" }, "locus": { "chromosome": "X", "start_pos": 97024824, "end_pos": 96950830, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053734.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053734.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037318.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037318.2" } ] } }, { "isoform_ac": "A0A5G2QST7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1/entry#A0A5G2QST7-1", "sequence": { "sequence": "MASESDTEEFFDAPEDVHLGGGYPVGSPGKVGTSTLKIIESIIEESQKVLQLEDDSLDSRGKGHSDQATANPVVAETDLSNIPVLLAIDQVLQEGSQKAESQDVSEETEIESQKCFPSDDTCEKPVDETTKLTEISSAEQLNVPETETEMLNKEAVEVKESDVLEPASSHSLSTKDFAVVEEVAPAKPPRQLTPEPDIVASTKKPVPARPPPPTNFPPPRPPPPSRPAPPPRKKKSELEFEALKTPDLDVPKENITPDTLLTTSLASESTVKDSQPSLDLASATSGDKIVTAQENGKAPDGQTIAGEVMGPQRPRSNSGRELTDEEILASVMIKNLDTGEEIPLSLAEEKLPTGINPLTLHIMRRTKEYVSNDAAQSDDEEKLQSQQTDTDGGRLKQKTTQLKKFLGKSVKRAKHLAEEYGERAVNKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAAHGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTEGRVSPSPSQESLNSSKSDTDTGVCSGADEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFSYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLSLDMQSEKSEGNDKGEDAEVLDTMPSGIMKTDNTEVLLSADFTGAIKVFINKRKNVS", "length": 823, "header": "tr|A0A5G2QST7-1|A0A5G2QWB1_PIG Computationally mapped isoform of WD repeat-containing protein 44 OS=Sus scrofa OX=9823 GN=WDR44 PE=4 SV=1 CANONICAL=A0A5G2QWB1-1" }, "locus": { "chromosome": "X", "start_pos": 97024824, "end_pos": 96950830, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070157.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070157.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067201.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067201.1" } ] } }, { "isoform_ac": "A0A5G2QWB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1/entry#A0A5G2QWB1-1", "sequence": { "sequence": "MASESDTEEFFDAPEDVHLGGGYPVGSPGKVGTSTLKETENTAYKVGNESPVQELKQDVSKKIIESIIEESQKVLQLEDDSLDSRGKGHSDQATANPVVAETDLSNIPVLLAIDQVLQEGSQKAESQDVSEETEIESQKCFPSDDTCEKPVDETTKLTEISSAEQLNVPETETEMLNKEAVEVKESDVLEPASSHSLSTKDFAVVEEVAPAKPPRQLTPEPDIVASTKKPVPARPPPPTNFPPPRPPPPSRPAPPPRKKKSELEFEALKTPDLDVPKENITPDTLLTTSLASESTVKDSQPSLDLASATSGDKIVTAQENGKAPDGQTIAGEVMGPQRPRSNSGRELTDEEILASVMIKNLDTGEEIPLSLAEEKLPTGINPLTLHIMRRTKEYVSNDAAQSDDEEKLQSQQTDTDGGRLKQKTTQLKKFLGKSVKRAKHLAEEYGERAVNKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAAHGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTEGRVSPSPSQESLNSSKSDTDTGVCSGADEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFSYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLSLDMQSEKSEGNDKGEDAEVLDTMPSVASLTYGYS", "length": 890, "header": "tr|A0A5G2QWB1-1|A0A5G2QWB1_PIG Isoform 1 of WD repeat-containing protein 44 OS=Sus scrofa OX=9823 GN=WDR44 PE=4 SV=1 CANONICAL=A0A5G2QWB1-1" }, "locus": { "chromosome": "X", "start_pos": 97021880, "end_pos": 96950830, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081455.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081455.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069239.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069239.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QST7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "intein-mediated protein splicing", "id": "GO:0016539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016539", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1" } ], "pmid": "" }, { "name": "negative regulation of cilium assembly", "id": "GO:1902018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902018", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1" } ], "pmid": "" }, { "name": "regulation of vesicle-mediated transport", "id": "GO:0060627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060627", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1" } ], "pmid": "" }, { "name": "cytosolic ciliogenesis", "id": "GO:0061824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061824", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1" } ], "pmid": "" }, { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1" } ], "pmid": "" }, { "name": "molecular sequestering activity", "id": "GO:0140313", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140313", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 569, "end_pos": 571, "annotation": "n_glycosylation_sequon" }, { "start_pos": 761, "end_pos": 763, "annotation": "n_glycosylation_sequon" }, { "start_pos": 784, "end_pos": 786, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 279, "end_pos": 281 }, { "start_pos": 48, "end_pos": 50 }, { "start_pos": 569, "end_pos": 571 }, { "start_pos": 761, "end_pos": 763 }, { "start_pos": 784, "end_pos": 786 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A5G2QTJ0-1", "uniprot_ac": "A0A5G2QTJ0", "uniprot_id": "A0A5G2QTJ0_PIG", "mass": { "chemical_mass": 38131.0, "monoisotopic_mass": 38131.0 }, "refseq": {}, "gene_names": [ { "name": "MTFR1", "type": "recommended", "evidence": [ { "id": "A0A5G2QTJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0" } ] } ], "protein_names": [ { "name": "Mitochondrial fission regulator", "type": "recommended", "evidence": [ { "id": "A0A5G2QTJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May play a role in mitochondrial aerobic respiration. May also regulate mitochondrial organization and fission.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A611", "url": "https://www.uniprot.org/uniprotkb/A0A287A611#function" }, { "database": "UniProtKB", "id": "ARBA00037378", "url": "https://www.uniprot.org/uniprotkb/ARBA00037378#function" }, { "database": "UniProtKB", "id": "A0A287AF55", "url": "https://www.uniprot.org/uniprotkb/A0A287AF55#function" }, { "database": "UniProtKB", "id": "A0A287AIG8", "url": "https://www.uniprot.org/uniprotkb/A0A287AIG8#function" }, { "database": "UniProtKB", "id": "A0A5G2QTJ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0#function" }, { "database": "UniProtKB", "id": "F1RTB1", "url": "https://www.uniprot.org/uniprotkb/F1RTB1#function" } ] }, { "annotation": "Plays a role in mitochondrial aerobic respiration. Regulates mitochondrial organization and fission.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A611", "url": "https://www.uniprot.org/uniprotkb/A0A287A611#function" }, { "database": "UniProtKB", "id": "RU369053", "url": "https://www.uniprot.org/uniprotkb/RU369053#function" }, { "database": "UniProtKB", "id": "A0A287AF55", "url": "https://www.uniprot.org/uniprotkb/A0A287AF55#function" }, { "database": "UniProtKB", "id": "A0A287AIG8", "url": "https://www.uniprot.org/uniprotkb/A0A287AIG8#function" }, { "database": "UniProtKB", "id": "A0A5G2QTJ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0#function" }, { "database": "UniProtKB", "id": "F1RTB1", "url": "https://www.uniprot.org/uniprotkb/F1RTB1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTJ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MTFR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0", "locus": { "chromosome": "4", "start_pos": 68902857, "end_pos": 68969615, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006219", "url": "https://www.ensembl.org/id/ENSSSCG00000006219" } ] } } ], "crossref": [ { "id": "A0A5G2QTJ0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTJ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006219", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006219", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522611", "url": "https://www.ncbi.nlm.nih.gov/gene/100522611", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522611", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522611", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CPRIHFQ", "url": "https://omabrowser.org/oma/group/CPRIHFQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RTB1", "url": "https://www.orthodb.org/?gene=F1RTB1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14215", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14215", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14215:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14215:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05308", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05308", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A611", "url": "https://www.uniprot.org/uniprotkb/A0A287A611", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A611-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A611-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AF55", "url": "https://www.uniprot.org/uniprotkb/A0A287AF55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AF55-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF55-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIG8", "url": "https://www.uniprot.org/uniprotkb/A0A287AIG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIG8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTJ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTB1", "url": "https://www.uniprot.org/uniprotkb/F1RTB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTB1-1", "url": "https://www.uniprot.org/uniprotkb/F1RTB1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SEVKTLESGWLGVEEAPRGRRREPLVTLRVLWSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSPTTEWSPSNPEEDAVVSFADIGWVAKEDGECSTRRRAEVRSRQPLQDELPFFEQPPSRQFSFPSLSPEEPQLQTTILANEEALQKICALESELAALRAQIAKIVTLQEQQNLSAGDLDSTTSVATAPPSVPPAPPLPPPPPPPPLPPSGFHQNTSVIDLIKERKEKNARAGKTSVKNSPKKPAMPNMLEILKDMNSVKLRSVKRSDQDAKPKPVDAADPAALIAEALKRKFAYRYRSDSQGEAEKGIPKSEPEVSPERVLFGPHMLKSTGKMKALIENVSTS", "length": 347, "header": "tr|A0A5G2QTJ0-1|A0A5G2QTJ0_PIG Isoform 1 of Mitochondrial fission regulator OS=Sus scrofa OX=9823 GN=MTFR1 PE=3 SV=2 CANONICAL=A0A5G2QTJ0-1" }, "isoforms": [ { "isoform_ac": "A0A287A611-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0/entry#A0A287A611-1", "sequence": { "sequence": "MLGWIKRLIRMVFQQVGNMQSVLWSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSPTTEWSPSNPEEDAVVSFADIGWVAKEDGECSTRRRAEVRSRQPLQDELPFFEQPPSRQFSFPSLSPEEPQLQTTILANEEALQKICALESELAALRAQIAKIVTLQEQQNLSAGDLDSTTSVATAPPSVPPAPPLPPPPPPPPLPPSGFHQNTSVIDLIKERKEKNARAGKTSVKNSPKKPAMPNMLEILKDMNSVKLRSVKRSDQDAKPKPVDAADPAALIAEALKRKFAYRYRSDSQGEAEKGIPKSEPEVSPERVLFGPHMLKYSVVSF", "length": 330, "header": "tr|A0A287A611-1|A0A5G2QTJ0_PIG Computationally mapped isoform of Mitochondrial fission regulator OS=Sus scrofa OX=9823 GN=MTFR1 PE=3 SV=3 CANONICAL=A0A5G2QTJ0-1" }, "locus": { "chromosome": "4", "start_pos": 68958159, "end_pos": 68904221, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060836.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060836.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039254.3", "url": "https://www.ensembl.org/id/ENSSSCP00000039254.3" } ] } }, { "isoform_ac": "A0A287AF55-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0/entry#A0A287AF55-1", "sequence": { "sequence": "GKIIYWGRTFKVLWSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSPTTEWSPSNPEEDAVVSFADIGWVAKEDGECSTRRRAEVRSRQPLQDELPFFEQPPSRQFSFPSLSPEEPQLQTTILANEEALQKICALESELAALRAQIAKIVTLQEQQNLSAGDLDSTTSVATAPPSVPPAPPLPPPPPPPPLPPSGFHQNTSVIDLIKERKEKNARAGKTSVKNSPKKPAMPNMLEILKDMNSVKLRSVKRSDQDAKPKPVDAADPAALIAEALKRKFAYRYRSDSQGEAEKGIPKSEPEVSPERVLFGPHMLKSTGKMKALIENVSTS", "length": 329, "header": "tr|A0A287AF55-1|A0A5G2QTJ0_PIG Computationally mapped isoform of Mitochondrial fission regulator OS=Sus scrofa OX=9823 GN=MTFR1 PE=3 SV=2 CANONICAL=A0A5G2QTJ0-1" }, "locus": { "chromosome": "4", "start_pos": 68947915, "end_pos": 68904343, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046248.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046248.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042470.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042470.2" } ] } }, { "isoform_ac": "A0A287AIG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0/entry#A0A287AIG8-1", "sequence": { "sequence": "LGWFFNRLETCSRWGRTFKVLWSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSPTTEWSPSNPEEDAVVSFADIGWVAKEDGECSTRRRAEVRSRQPLQDELPFFEQPPSRQFSFPSLSPEEPQLQTTILANEEALQKICALESELAALRAQIAKIVTLQEQQNLSAGDLDSTTSVATAPPSVPPAPPLPPPPPPPPLPPSGFHQNTSVIDLIKERKEKNARAGKTSVKNSPKKPAMPNMLEILKDMNSVKLRSVKRSDQDAKPKPVDAADPAALIAEALKRKFAYRYRSDSQGEAEKGIPKSEPEVSPERVLFGPHMLKSTGKMKALIENVSTS", "length": 337, "header": "tr|A0A287AIG8-1|A0A5G2QTJ0_PIG Computationally mapped isoform of Mitochondrial fission regulator OS=Sus scrofa OX=9823 GN=MTFR1 PE=3 SV=3 CANONICAL=A0A5G2QTJ0-1" }, "locus": { "chromosome": "4", "start_pos": 68958134, "end_pos": 68904343, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043683.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043683.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043688.3", "url": "https://www.ensembl.org/id/ENSSSCP00000043688.3" } ] } }, { "isoform_ac": "A0A5G2QTJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0/entry#A0A5G2QTJ0-1", "sequence": { "sequence": "SEVKTLESGWLGVEEAPRGRRREPLVTLRVLWSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSPTTEWSPSNPEEDAVVSFADIGWVAKEDGECSTRRRAEVRSRQPLQDELPFFEQPPSRQFSFPSLSPEEPQLQTTILANEEALQKICALESELAALRAQIAKIVTLQEQQNLSAGDLDSTTSVATAPPSVPPAPPLPPPPPPPPLPPSGFHQNTSVIDLIKERKEKNARAGKTSVKNSPKKPAMPNMLEILKDMNSVKLRSVKRSDQDAKPKPVDAADPAALIAEALKRKFAYRYRSDSQGEAEKGIPKSEPEVSPERVLFGPHMLKSTGKMKALIENVSTS", "length": 347, "header": "tr|A0A5G2QTJ0-1|A0A5G2QTJ0_PIG Isoform 1 of Mitochondrial fission regulator OS=Sus scrofa OX=9823 GN=MTFR1 PE=3 SV=2 CANONICAL=A0A5G2QTJ0-1" }, "locus": { "chromosome": "4", "start_pos": 68969559, "end_pos": 68904343, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068385.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068385.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065315.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065315.2" } ] } }, { "isoform_ac": "F1RTB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0/entry#F1RTB1-1", "sequence": { "sequence": "MLGWIKRLIRMVFQQVGNMQSVLWSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSPTTEWSPSNPEEDAVVSFADIGWVAKEDGECSTRRRAEVRSRQPLQDELPFFEQPPSRQFSFPSLSPEEPQLQTTILANEEALQKICALESELAALRAQIAKIVTLQEQQNLSAGDLDSTTSVATAPPSVPPAPPLPPPPPPPPLPPSGFHQNTSVIDLIKERKEKNARAGKTSVKNSPKKPAMPNMLEILKDMNSVKLRSVKRSDQDAKPKPVDAADPAALIAEALKRKFAYRYRSDSQGEAEKGIPKSEPEVSPERVLFGPHMLKSTGKMKALIENVSTS", "length": 339, "header": "tr|F1RTB1-1|A0A5G2QTJ0_PIG Computationally mapped isoform of Mitochondrial fission regulator OS=Sus scrofa OX=9823 GN=MTFR1 PE=3 SV=3 CANONICAL=A0A5G2QTJ0-1" }, "locus": { "chromosome": "4", "start_pos": 68958159, "end_pos": 68904343, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006815.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006815.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006630.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006630.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A611", "url": "https://www.uniprot.org/uniprotkb/A0A287A611" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522611", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522611", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1RCE7-1", "protein_name": "Mitochondrial fission regulator 1", "gene_name": "mtfr1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSRNHRRIEMDLAVGSSSKHYGSSRSIVRRIATNLPLAPCPRVHFQLHPFASGASFLNSPNGPNVATLADVAWIDREESDGPGRIRCEADSGLVFRTQERRPLRRQRSLPSLHQVEPAQQSQTVINDEAIQKISVLETELAKLRAQIAQIVQAQEQSAQSTAPAPGGPPVPPPMVPVPPPPPPPPPCPTPSMQRSYSAIDLIRERRGKKAEQNTVLDSAPKKPELPNMLDVLKDMGKVKLRSVKSHQEDGNVKAKPVEPTDAAAMIAEALKRKFAHRYRNDSECDGTFTFTAFENKPHVETPLFGQHMLKSTGRRKMH", "length": 318 }, "evidence": [ { "id": "A0A5G2QTJ0", "url": "https://omabrowser.org/oma/group/A0A5G2QTJ0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3V9A7-1", "protein_name": "Mitochondrial fission regulator 1", "gene_name": "Mtfr1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLGWIKCLMRMWFQRVGVSMQSVLWSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSHATEWSPTHPGEDVVATFADVGWVATDEGECSTRLRTEVRSKPPLENNPPCFEKPPSRHISLPNSSQDKPSPKTTLASEEALQKISALENELAALRAQIAKIVTLQEQQSPSAGCLDSSTPVIVVPPPPPPPPPPPPLPPPPLVLHPSTSALDLIKERREQRLSAGKTLAKGHPKKLDMPNMLEILKDMNSVKLRPVKRSEKDEKPRPVDITDPAALIAEALKKKFAYRHRHNSQGEAERGIPKPESDATSEPALFGPHTLKSTGKMKALIENVSDS", "length": 335 }, "evidence": [ { "id": "A0A5G2QTJ0", "url": "https://omabrowser.org/oma/group/A0A5G2QTJ0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q15390-1", "protein_name": "Mitochondrial fission regulator 1", "gene_name": "MTFR1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLGWIKRLIRMVFQQVGVSMQSVLWSRKPYGSSRSIVRKIGTNLSLIQCPRVQFQINSHATEWSPSHPGEDAVASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAPSRQISLPDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTFGTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDEVEKGIPKSESEATSERVLFGPHMLKPTGKMKALIENVSDS", "length": 333 }, "evidence": [ { "id": "A0A5G2QTJ0", "url": "https://omabrowser.org/oma/group/A0A5G2QTJ0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99MB2-1", "protein_name": "Mitochondrial fission regulator 1", "gene_name": "Mtfr1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLGWIKCLMRMWFQRVGVSMQSVLWSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSHATEWSPAHSGEDAVASFADVGLVATEEGECSIRLRAEVSSKPPHEDDPPCFEKPPSRHTSFPSLSQDKPSPERTLASEEALQKISALENELAALRAQIAKIVTLQEQQSPSAGCLDSSTSVTVAPPPPPPPPPPPLPLVLHQSTSALDLIKERREQRLSAGKTLATGHPKKPDMPNMLEILKDMNSVKLRSVKRSEKDVKPRPADTDHAAFIAEALKKKFAYRHNSQGETERGIPKPESEATSEPALFGPHILKSTGKMKALIENVPDS", "length": 328 }, "evidence": [ { "id": "A0A5G2QTJ0", "url": "https://omabrowser.org/oma/group/A0A5G2QTJ0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9PTD5-1", "protein_name": "Mitochondrial fission regulator 1", "gene_name": "MTFR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MIRWFKCFMRMIFEQVGLNMESVLWSSKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSQAAEGNHPHQFREDAVASFADVGWVAQEEGEVSTRLRSEVWSKTAQPLPGELHQPGHSLGRQDSVPNLLHEEPAPRSTVIANEEAMQKISALENELATLRAQIAKIVILQEQQNLTAAGLSPVASAAVPCVPPPPPPPPPPPLPPPALQQSMSAIELIRERKNRKTNSGPIPTENGPKKPEIPNMLEILKDMNSVKLRSVKKSSGDTKPKVADPTDPAALIAEALKKKFAYRYRRDSQSESDKVIPKSETNTKTEVVLFGPHMLKSTGKMKTLIEKS", "length": 335 }, "evidence": [ { "id": "A0A5G2QTJ0", "url": "https://omabrowser.org/oma/group/A0A5G2QTJ0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTJ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTJ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTJ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitochondrial fission", "id": "GO:0000266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000266", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTJ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0" } ], "pmid": "" }, { "name": "aerobic respiration", "id": "GO:0009060", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009060", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTJ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 176, "end_pos": 178, "annotation": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287B0Y8-1", "uniprot_ac": "A0A287B0Y8", "uniprot_id": "A0A287B0Y8_PIG", "mass": { "chemical_mass": 530523.0, "monoisotopic_mass": 530523.0 }, "refseq": { "ac": "XP_020946029", "name": "plectin isoform X7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946029" }, "gene_names": [ { "name": "PLEC", "type": "recommended", "evidence": [ { "id": "A0A287B0Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ] }, { "name": "PLEC", "type": "synonym", "evidence": [ { "id": "XP_020946029", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946029" } ] } ], "protein_names": [ { "name": "Plectin", "type": "recommended", "evidence": [ { "id": "A0A287B0Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8/entry#names_and_taxonomy" } ] }, { "name": "Plectin-1", "type": "synonym", "evidence": [ { "id": "A0A287B0Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8/entry#names_and_taxonomy" } ] }, { "name": "plectin isoform X7", "type": "synonym", "evidence": [ { "id": "XP_020946029", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946029" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLEC", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8", "locus": { "chromosome": "4", "start_pos": 753696, "end_pos": 689034, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039094", "url": "https://www.ensembl.org/id/ENSSSCG00000039094" } ] } } ], "crossref": [ { "id": "ENSSSCG00000039094", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039094", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00176", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00176", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12547", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12547", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21188", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21188", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21238", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21238", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110260403", "url": "https://www.ncbi.nlm.nih.gov/gene/110260403", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001101", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001101", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005326", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005326", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034464", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034464", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041573", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041573", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041615", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041615", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049538", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049538", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23169", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23169", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23169:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23169:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03501", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03501", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17902", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17902", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21019", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21019", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21020", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21020", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21097", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21097", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27824", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27824", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2022090", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-264870", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-264870", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-446107", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446107", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020946029", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946029", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A8C7", "url": "https://www.uniprot.org/uniprotkb/A0A287A8C7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8C7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA88", "url": "https://www.uniprot.org/uniprotkb/A0A287AA88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA88-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA88-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B217", "url": "https://www.uniprot.org/uniprotkb/A0A287B217", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B217-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B217-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B9H1", "url": "https://www.uniprot.org/uniprotkb/A0A287B9H1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B9H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B9H1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN04", "url": "https://www.uniprot.org/uniprotkb/A0A287BN04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN04-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN04-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BNK7", "url": "https://www.uniprot.org/uniprotkb/A0A287BNK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BNK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BNK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVAGMLMPLDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVSNLQVMRAMASLRARGLVRETFAWRHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRPPHVQAVQGPLGCPPKRGPLPAEDPAREERWVYRRKKPEEGAPEPPVVPATTPGTLVRPGPEPAPATDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPMLIDMNKVYRQSNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPDAQDGVKANELQLRWQEYRELVLLLLQWVRQHTAAFEERRFPSSFEEVEVLWCQFLKFKETELPAKEADKNRSKSIYQTLEGAVQAGQLKMPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADALLQSDVRLLAAGKAPQRASEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLRGAARHPELEDSSLRYLQELLAWVEENQRRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARADEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHGFVAAATKELMWLSEKEEEEVAFDWSERNANMVAKKEAYSALMRELELKEKKIKEIQSTGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLRKLQETLRRKYTCDRSITVTRLEDLLQDAQDEKDQLNEYRGHLSGLAKRAKAIVQLKPRNPAHPTRGHVPLLAVCDYKQVEVTVHKGDECQMVGPAQPFHWKVLSSSGSEAAVPSVCFLVPPPNQEAQDAITRLEAQHQALVALWHQLHTDMKSLLAWQSLSRDVQLIRSWSLVTFRTLKPEEQRQALRSLELHYQAFLRDSQDAGGFGPEDRLQAEREYGSCSRHYQQLLQSLEQGEQEESRCQRCISELKDIRLQLEACETRTVHRLRLPLDKEPARECAQRIAEQQKAQAEVEGLGKGVARLSVEAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLRAHEEHLKEAQTVPATLPELEATKAALKKLRAQAEAQQPVFDALRDELRGAQEVGERLQQRHGERDVEVERWRERVTQLLERWQAVLVQTDVRQRELEQLGRQLRYYRESADPLGAWLQDAKRRQEQIQAVPLAHSQAVREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFITETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAEREAQELQRRMQEEVARREEVAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQVEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDETQRKRQAEAELALRVKAEAEAAREKQRALQALEELRLQAEEAERRLRQAEAERARQVQVALETAQRSAEAELQSKQASFVEKTAQLERTLKEEHVTVAQLREEATRRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQQEAAVATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEILALKANFEKAAAGKAELELELGRIRGNAEDTLRSKEQAEQEAARQRQLAAEEERRRREAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLERLRGEAEAARRAAEEAEEARERAEREAAQSRRQLEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLRQKAQVEQELTALRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALVLRDKDNTQRLLQEEAEKMKQVAEEAARLTVAAQEAARLRQLAEEDLAQQRSLAEKMLKEKMQAVQEATRLKAEAELLQQQKDLAQEQARRLQEDKEQMAQQLAQETQGFQRTLETERQRQLEMSAEAERLRLRVAEMSRAQARAEEDAQRFRKQAEEIGERLHRTELATQEKVTLVQTLETQRQQSDQDAERLREAIAELEREKAKLKQEAELLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAQKLREEQQRQQQQMEQEKQQLVASMEEARRRQHAAEEGVRRKQEELQRLEQQRQQQEKLLAEENQRLRERLQHLEEEHRAALAHSEEIAASQAAAAKALPNGRDAPDGPAVEAEPEHAFDGLRRKVPAQRLQEVGILSTEELQRLAQGRTTVAELAQREDVRHYLQGRSGIAGLLLKPANEKLTIYAALRRQLLSPGTALILLEAQAASGFLLDPVRNRWLTVNEAVKEGLVGPELHHKLLSAERAVTGYKDPYTGEQISLFQAMKKDLIVREHGLRLLEAQIATGGIIDPVRSHRVPVAVAYQRGYFDEEMSRVLEDPSDDTKGFFDPNTHENLTYMQLLERCVEDPETGLRLLPLTDQAAKAGELVYTDSEARDVFEKATVSAPFGKFQGRTVTIWELINSEYFTAEQRQELLRQFRTGKVTVEKIIKIVVTVLEEHEQKSQLCFKGLRALVPAAELLESRVIDHDLYRQLQRGERSVQEVAEVEAVRRALRGSSVIAGVWLEEAGRKLSVYEALKKDLLQPEAAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPELHEKLLSAEKAVTGYKDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLCTGGIVDPSKSHRVPLDVACARGYLDEETSTALSAPRDDAKAYRDPSTWEPVSYRQLQQQCRADQLTGLSLLPLSEEAARARQQELYSELQAREAFQKATVEVPVGSFQGRTVTVWELISSEYFSAEQRRELLRQFRTGKVTVEKIIKIVITIVEEAEAVRQERLSFSGLRAPVPASELVAAGVLSQAQFEQLQDGRTSVKDLSEVDSVRTLLQGSGCLAGVYLEDSREKVSVYEAMRRGLLRPSTAALLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGSTISLFQAMKKGLVLREHGLRLLEAQVATGGVIDPVHSHRVPLAVACQRGYLDEELSRVLEDPGDDAKGFFDPNTHENLTYGQLLARCVEDPETGLRLLPLRGAEKAEVVETTRVYTEEETRRAFEETQIDIPGGGRHGGATMSLWEVMQSDLIPEEQRARLLADFQAGRVTKERMIVIIIEIIERTEVVRQQHAASYEHGRRRLTAEDLVEARVISREAYSLLREGARTLREVLEAESAWRYLHGTGCVAGVYLPGSKQTLSVYQALKKGLLSAEVARLLLEAQAATGFLLDPAKGERLTVDEAVRKGLVGPELHDRLLSAERAVSGYRDPYTEQTISLFEAMRKDLIPAEEALRLLDAQLATGGIMDPRLSIHLPLEVAYQRGYLNKDTHDQLSEPSEVRGYLDPSTDERLSYTQLLRRCRRDEGSGLLLLPLSDARQLTFRGLRKQITVEELVRSHVMDEATALRLQEGLTSVEEVSKNLQKFLEGTSSIAGVLVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYRDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATGGIIDPEESHRLPVDVAYQRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCVTDPQTGLRLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITTSSSDGVVKSMIIDRRSGRQYDIDEALAKSLIDRSALDQYRAGTLSITEFADMLSGSAGGFRSRSSSVGSSSSYPVSPAVSRTPLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPGTGERFPVTEAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTRMSAAQALKKGWLYYEAGQRFLEAQYLTGGLIEPDTPGRVPLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGSGSTAGSRSGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRRYASGPAPSLGGPESAVA", "length": 4673, "header": "tr|A0A287B0Y8-1|A0A287B0Y8_PIG Isoform 1 of Plectin OS=Sus scrofa OX=9823 GN=PLEC PE=3 SV=2 CANONICAL=A0A287B0Y8-1" }, "isoforms": [ { "isoform_ac": "A0A287A8C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8/entry#A0A287A8C7-1", "sequence": { "sequence": "MGEVGTVVEVSGLTPDVPEELLMLYFENRRSSGGGPVLSWQRLGPGGILSFREPADAARVLAQEEHTLCGARLSLRPAPPRAPARLLLQALPPGLAPQRLEQHVQALLRATGHPEQPCRALASPRPDRALVQLPKPLSEAAAERVLQRDHRLQGSELSLVPHYEVLEPEELAEDTRGGSHLAALGPGAPEHALPEAGRPTRAQSCAGPVTLGSEEAPGPSGASVRTGSPWRRSSLGPAGPISSGPMESSEQAGLVGPGPGGSPGPVENTMGSPEQVESVSLGPVGSPGQEGPMDTVLPMEPGAMRFLQLYHEDLLAGLGDVALFPLEGSDTTGFRLCGAPGPCRAAEEFLQSLLGSISCHVLSLKHPGSAGFLLSPEGQHLLRGLEAQFQCVFGTEHLARAALHTDPEEVDPRALGPPDDAGRDQENVSLEEVQELLATLEGLEGEERLPLVLGEEEPEGRPEEEEEEEAVTPRAGEGPVAPGTGVPGPLEEEAALQLALYQSLEPQDQVAEREEAVALQRALALSLLEPPWLEEGEHEGQGPGGCAQLVVHVAFEQDLDELDRALEAALEVHLREETVAPQGCMLPAELCARLGRCHGVSVALRGDHTVFRGFGAQPTRAARHLAALLAGPRDQSLAFLLATLGPTWPPQRPREPLGSLERLAESSREFQTVVQAFYDTLDAAHGKILVVRKAMSGEDHEVRATVEDGSNGGSGSPSPGDTLPWNLEKTQRSRRSGGGPGGNGSVLDPAERAVIRIADERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPMLIDMNKVYRQSNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPDAQDGVKANELQLRWQEYRELVLLLLQWVRQHTAAFEERRFPSSFEEVEVLWCQFLKFKETELPAKEADKNRSKSIYQTLEGAVQAGQLKMPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADALLQSDVRLLAAGKAPQRASEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLRGAARHPELEDSSLRYLQELLAWVEENQRRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARADEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHGFVAAATKELMWLSEKEEEEVAFDWSERNANMVAKKEAYSALMRELELKEKKIKEIQSTGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLRKLQETLRRKYTCDRSITVTRLEDLLQDAQDEKDQLNEYRGHLSGLAKRAKAIVQLKPRNPAHPTRGHVPLLAVCDYKQVEVTVHKGDECQMVGPAQPFHWKVLSSSGSEAAVPSVCFLVPPPNQEAQDAITRLEAQHQALVALWHQLHTDMKSLLAWQSLSRDVQLIRSWSLVTFRTLKPEEQRQALRSLELHYQAFLRDSQDAGGFGPEDRLQAEREYGSCSRHYQQLLQSLEQGEQEESRCQRCISELKDIRLQLEACETRTVHRLRLPLDKEPARECAQRIAEQQKAQAEVEGLGKGVARLSVEAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLRAHEEHLKEAQTVPATLPELEATKAALKKLRAQAEAQQPVFDALRDELRGAQEVGERLQQRHGERDVEVERWRERVTQLLERWQAVLVQTDVRQRELEQLGRQLRYYRESADPLGAWLQDAKRRQEQIQAVPLAHSQAVREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFITETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAEREAQELQRRMQEEVARREEVAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQVEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDETQRKRQAEAELALRVKAEAEAAREKQRALQALEELRLQAEEAERRLRQAEAERARQVQVALETAQRSAEAELQSKQASFVEKTAQLERTLKEEHVTVAQLREEATRRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQQEAAVATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEILALKANFEKAAAGKAELELELGRIRGNAEDTLRSKEQAEQEAARQRQLAAEEERRRREAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLERLRGEAEAARRAAEEAEEARERAEREAAQSRRQLEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLRQKAQVEQELTALRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALVLRDKDNTQRLLQEEAEKMKQVAEEAARLTVAAQEAARLRQLAEEDLAQQRSLAEKMLKEKMQAVQEATRLKAEAELLQQQKDLAQEQARRLQEDKEQMAQQLAQETQGFQRTLETERQRQLEMSAEAERLRLRVAEMSRAQARAEEDAQRFRKQAEEIGERLHRTELATQEKVTLVQTLETQRQQSDQDAERLREAIAELEREKAKLKQEAELLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAQKLREEQQRQQQQMEQEKQQLVASMEEARRRQHAAEEGVRRKQEELQRLEQQRQQQEKLLAEENQRLRERLQHLEEEHRAALAHSEEIAASQAAAAKALPNGRDAPDGPAVEAEPEHAFDGLRRKVPAQRLQEVGILSTEELQRLAQGRTTVAELAQREDVRHYLQGRSGIAGLLLKPANEKLTIYAALRRQLLSPGTALILLEAQAASGFLLDPVRNRWLTVNEAVKEGLVGPELHHKLLSAERAVTGYKDPYTGEQISLFQAMKKDLIVREHGLRLLEAQIATGGIIDPVRSHRVPVAVAYQRGYFDEEMSRVLEDPSDDTKGFFDPNTHENLTYMQLLERCVEDPETGLRLLPLTDQAAKAGELVYTDSEARDVFEKATVSAPFGKFQGRTVTIWELINSEYFTAEQRQELLRQFRTGKVTVEKIIKIVVTVLEEHEQKSQLCFKGLRALVPAAELLESRVIDHDLYRQLQRGERSVQEVAEVEAVRRALRGSSVIAGVWLEEAGRKLSVYEALKKDLLQPEAAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPELHEKLLSAEKAVTGYKDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLCTGGIVDPSKSHRVPLDVACARGYLDEETSTALSAPRDDAKAYRDPSTWEPVSYRQLQQQCRADQLTGLSLLPLSEEAARARQQELYSELQAREAFQKATVEVPVGSFQGRTVTVWELISSEYFSAEQRRELLRQFRTGKVTVEKIIKIVITIVEEAEAVRQERLSFSGLRAPVPASELVAAGVLSQAQFEQLQDGRTSVKDLSEVDSVRTLLQGSGCLAGVYLEDSREKVSVYEAMRRGLLRPSTAALLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGSTISLFQAMKKGLVLREHGLRLLEAQVATGGVIDPVHSHRVPLAVACQRGYLDEELSRVLEDPGDDAKGFFDPNTHENLTYGQLLARCVEDPETGLRLLPLRGAEKAEVVETTRVYTEEETRRAFEETQIDIPGGGRHGGATMSLWEVMQSDLIPEEQRARLLADFQAGRVTKERMIVIIIEIIERTEVVRQQHAASYEHGRRRLTAEDLVEARVISREAYSLLREGARTLREVLEAESAWRYLHGTGCVAGVYLPGSKQTLSVYQALKKGLLSAEVARLLLEAQAATGFLLDPAKGERLTVDEAVRKGLVGPELHDRLLSAERAVSGYRDPYTEQTISLFEAMRKDLIPAEEALRLLDAQLATGGIMDPRLSIHLPLEVAYQRGYLNKDTHDQLSEPSEVRGYLDPSTDERLSYTQLLRRCRRDEGSGLLLLPLSDARQLTFRGLRKQITVEELVRSHVMDEATALRLQEGLTSVEEVSKNLQKFLEGTSSIAGVLVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYRDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATGGIIDPEESHRLPVDVAYQRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCVTDPQTGLRLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITTSSSDGVVKSMIIDRRSGRQYDIDEALAKSLIDRSALDQYRAGTLSITEFADMLSGSAGGFRSRSSSVGSSSSYPVSPAVSRTPLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPGTGERFPVTEAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTRMSAAQALKKGWLYYEAGQRFLEAQYLTGGLIEPDTPGRVPLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGSGSTAGSRSGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRRYASGPAPSLGGPESAVA", "length": 5252, "header": "tr|A0A287A8C7-1|A0A287B0Y8_PIG Computationally mapped isoform of Plectin OS=Sus scrofa OX=9823 GN=PLEC PE=3 SV=1 CANONICAL=A0A287B0Y8-1" }, "locus": { "chromosome": "4", "start_pos": 752692, "end_pos": 689233, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054546.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054546.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040135.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040135.1" } ] } }, { "isoform_ac": "A0A287AA88-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8/entry#A0A287AA88-1", "sequence": { "sequence": "MEPSGSLFPSLVVVGHVVTLAAVWHWRRGRRRVQDEQDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPMLIDMNKVYRQSNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPDAQDGVKANELQLRWQEYRELVLLLLQWVRQHTAAFEERRFPSSFEEVEVLWCQFLKFKETELPAKEADKNRSKSIYQTLEGAVQAGQLKMPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADALLQSDVRLLAAGKAPQRASEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLRGAARHPELEDSSLRYLQELLAWVEENQRRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARADEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHGFVAAATKELMWLSEKEEEEVAFDWSERNANMVAKKEAYSALMRELELKEKKIKEIQSTGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLRKLQETLRRKYTCDRSITVTRLEDLLQDAQDEKDQLNEYRGHLSGLAKRAKAIVQLKPRNPAHPTRGHVPLLAVCDYKQVEVTVHKGDECQMVGPAQPFHWKVLSSSGSEAAVPSVCFLVPPPNQEAQDAITRLEAQHQALVALWHQLHTDMKSLLAWQSLSRDVQLIRSWSLVTFRTLKPEEQRQALRSLELHYQAFLRDSQDAGGFGPEDRLQAEREYGSCSRHYQQLLQSLEQGEQEESRCQRCISELKDIRLQLEACETRTVHRLRLPLDKEPARECAQRIAEQQKAQAEVEGLGKGVARLSVEAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLRAHEEHLKEAQTVPATLPELEATKAALKKLRAQAEAQQPVFDALRDELRGAQEVGERLQQRHGERDVEVERWRERVTQLLERWQAVLVQTDVRQRELEQLGRQLRYYRESADPLGAWLQDAKRRQEQIQAVPLAHSQAVREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFITETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAEREAQELQRRMQEEVARREEVAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQVEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDETQRKRQAEAELALRVKAEAEAAREKQRALQALEELRLQAEEAERRLRQAEAERARQVQVALETAQRSAEAELQSKQASFVEKTAQLERTLKEEHVTVAQLREEATRRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQQEAAVATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEILALKANFEKAAAGKAELELELGRIRGNAEDTLRSKEQAEQEAARQRQLAAEEERRRREAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLERLRGEAEAARRAAEEAEEARERAEREAAQSRRQLEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLRQKAQVEQELTALRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALVLRDKDNTQRLLQEEAEKMKQVAEEAARLTVAAQEAARLRQLAEEDLAQQRSLAEKMLKEKMQAVQEATRLKAEAELLQQQKDLAQEQARRLQEDKEQMAQQLAQETQGFQRTLETERQRQLEMSAEAERLRLRVAEMSRAQARAEEDAQRFRKQAEEIGERLHRTELATQEKVTLVQTLETQRQQSDQDAERLREAIAELEREKAKLKQEAELLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAQKLREEQQRQQQQMEQEKQQLVASMEEARRRQHAAEEGVRRKQEELQRLEQQRQQQEKLLAEENQRLRERLQHLEEEHRAALAHSEEIAASQAAAAKALPNGRDAPDGPAVEAEPEHAFDGLRRKVPAQRLQEVGILSTEELQRLAQGRTTVAELAQREDVRHYLQGRSGIAGLLLKPANEKLTIYAALRRQLLSPGTALILLEAQAASGFLLDPVRNRWLTVNEAVKEGLVGPELHHKLLSAERAVTGYKDPYTGEQISLFQAMKKDLIVREHGLRLLEAQIATGGIIDPVRSHRVPVAVAYQRGYFDEEMSRVLEDPSDDTKGFFDPNTHENLTYMQLLERCVEDPETGLRLLPLTDQAAKAGELVYTDSEARDVFEKATVSAPFGKFQGRTVTIWELINSEYFTAEQRQELLRQFRTGKVTVEKIIKIVVTVLEEHEQKSQLCFKGLRALVPAAELLESRVIDHDLYRQLQRGERSVQEVAEVEAVRRALRGSSVIAGVWLEEAGRKLSVYEALKKDLLQPEAAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPELHEKLLSAEKAVTGYKDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLCTGGIVDPSKSHRVPLDVACARGYLDEETSTALSAPRDDAKAYRDPSTWEPVSYRQLQQQCRADQLTGLSLLPLSEEAARARQQELYSELQAREAFQKATVEVPVGSFQGRTVTVWELISSEYFSAEQRRELLRQFRTGKVTVEKIIKIVITIVEEAEAVRQERLSFSGLRAPVPASELVAAGVLSQAQFEQLQDGRTSVKDLSEVDSVRTLLQGSGCLAGVYLEDSREKVSVYEAMRRGLLRPSTAALLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGSTISLFQAMKKGLVLREHGLRLLEAQVATGGVIDPVHSHRVPLAVACQRGYLDEELSRVLEDPGDDAKGFFDPNTHENLTYGQLLARCVEDPETGLRLLPLRGAEKAEVVETTRVYTEEETRRAFEETQIDIPGGGRHGGATMSLWEVMQSDLIPEEQRARLLADFQAGRVTKERMIVIIIEIIERTEVVRQQHAASYEHGRRRLTAEDLVEARVISREAYSLLREGARTLREVLEAESAWRYLHGTGCVAGVYLPGSKQTLSVYQALKKGLLSAEVARLLLEAQAATGFLLDPAKGERLTVDEAVRKGLVGPELHDRLLSAERAVSGYRDPYTEQTISLFEAMRKDLIPAEEALRLLDAQLATGGIMDPRLSIHLPLEVAYQRGYLNKDTHDQLSEPSEVRGYLDPSTDERLSYTQLLRRCRRDEGSGLLLLPLSDARQLTFRGLRKQITVEELVRSHVMDEATALRLQEGLTSVEEVSKNLQKFLEGTSSIAGVLVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYRDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATGGIIDPEESHRLPVDVAYQRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCVTDPQTGLRLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITTSSSDGVVKSMIIDRRSGRQYDIDEALAKSLIDRSALDQYRAGTLSITEFADMLSGSAGGFRSRSSSVGSSSSYPVSPAVSRTPLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPGTGERFPVTEAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTRMSAAQALKKGWLYYEAGQRFLEAQYLTGGLIEPDTPGRVPLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGSGSTAGSRSGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRRYASGPAPSLGGPESAVA", "length": 4531, "header": "tr|A0A287AA88-1|A0A287B0Y8_PIG Computationally mapped isoform of Plectin OS=Sus scrofa OX=9823 GN=PLEC PE=3 SV=3 CANONICAL=A0A287B0Y8-1" }, "locus": { "chromosome": "4", "start_pos": 752692, "end_pos": 725835, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061968.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061968.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040926.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040926.3" } ] } }, { "isoform_ac": "A0A287B0Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8/entry#A0A287B0Y8-1", "sequence": { "sequence": "MVAGMLMPLDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVSNLQVMRAMASLRARGLVRETFAWRHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRPPHVQAVQGPLGCPPKRGPLPAEDPAREERWVYRRKKPEEGAPEPPVVPATTPGTLVRPGPEPAPATDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPMLIDMNKVYRQSNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPDAQDGVKANELQLRWQEYRELVLLLLQWVRQHTAAFEERRFPSSFEEVEVLWCQFLKFKETELPAKEADKNRSKSIYQTLEGAVQAGQLKMPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADALLQSDVRLLAAGKAPQRASEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLRGAARHPELEDSSLRYLQELLAWVEENQRRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARADEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHGFVAAATKELMWLSEKEEEEVAFDWSERNANMVAKKEAYSALMRELELKEKKIKEIQSTGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLRKLQETLRRKYTCDRSITVTRLEDLLQDAQDEKDQLNEYRGHLSGLAKRAKAIVQLKPRNPAHPTRGHVPLLAVCDYKQVEVTVHKGDECQMVGPAQPFHWKVLSSSGSEAAVPSVCFLVPPPNQEAQDAITRLEAQHQALVALWHQLHTDMKSLLAWQSLSRDVQLIRSWSLVTFRTLKPEEQRQALRSLELHYQAFLRDSQDAGGFGPEDRLQAEREYGSCSRHYQQLLQSLEQGEQEESRCQRCISELKDIRLQLEACETRTVHRLRLPLDKEPARECAQRIAEQQKAQAEVEGLGKGVARLSVEAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLRAHEEHLKEAQTVPATLPELEATKAALKKLRAQAEAQQPVFDALRDELRGAQEVGERLQQRHGERDVEVERWRERVTQLLERWQAVLVQTDVRQRELEQLGRQLRYYRESADPLGAWLQDAKRRQEQIQAVPLAHSQAVREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFITETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAEREAQELQRRMQEEVARREEVAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQVEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDETQRKRQAEAELALRVKAEAEAAREKQRALQALEELRLQAEEAERRLRQAEAERARQVQVALETAQRSAEAELQSKQASFVEKTAQLERTLKEEHVTVAQLREEATRRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQQEAAVATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEILALKANFEKAAAGKAELELELGRIRGNAEDTLRSKEQAEQEAARQRQLAAEEERRRREAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLERLRGEAEAARRAAEEAEEARERAEREAAQSRRQLEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLRQKAQVEQELTALRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALVLRDKDNTQRLLQEEAEKMKQVAEEAARLTVAAQEAARLRQLAEEDLAQQRSLAEKMLKEKMQAVQEATRLKAEAELLQQQKDLAQEQARRLQEDKEQMAQQLAQETQGFQRTLETERQRQLEMSAEAERLRLRVAEMSRAQARAEEDAQRFRKQAEEIGERLHRTELATQEKVTLVQTLETQRQQSDQDAERLREAIAELEREKAKLKQEAELLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAQKLREEQQRQQQQMEQEKQQLVASMEEARRRQHAAEEGVRRKQEELQRLEQQRQQQEKLLAEENQRLRERLQHLEEEHRAALAHSEEIAASQAAAAKALPNGRDAPDGPAVEAEPEHAFDGLRRKVPAQRLQEVGILSTEELQRLAQGRTTVAELAQREDVRHYLQGRSGIAGLLLKPANEKLTIYAALRRQLLSPGTALILLEAQAASGFLLDPVRNRWLTVNEAVKEGLVGPELHHKLLSAERAVTGYKDPYTGEQISLFQAMKKDLIVREHGLRLLEAQIATGGIIDPVRSHRVPVAVAYQRGYFDEEMSRVLEDPSDDTKGFFDPNTHENLTYMQLLERCVEDPETGLRLLPLTDQAAKAGELVYTDSEARDVFEKATVSAPFGKFQGRTVTIWELINSEYFTAEQRQELLRQFRTGKVTVEKIIKIVVTVLEEHEQKSQLCFKGLRALVPAAELLESRVIDHDLYRQLQRGERSVQEVAEVEAVRRALRGSSVIAGVWLEEAGRKLSVYEALKKDLLQPEAAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPELHEKLLSAEKAVTGYKDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLCTGGIVDPSKSHRVPLDVACARGYLDEETSTALSAPRDDAKAYRDPSTWEPVSYRQLQQQCRADQLTGLSLLPLSEEAARARQQELYSELQAREAFQKATVEVPVGSFQGRTVTVWELISSEYFSAEQRRELLRQFRTGKVTVEKIIKIVITIVEEAEAVRQERLSFSGLRAPVPASELVAAGVLSQAQFEQLQDGRTSVKDLSEVDSVRTLLQGSGCLAGVYLEDSREKVSVYEAMRRGLLRPSTAALLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGSTISLFQAMKKGLVLREHGLRLLEAQVATGGVIDPVHSHRVPLAVACQRGYLDEELSRVLEDPGDDAKGFFDPNTHENLTYGQLLARCVEDPETGLRLLPLRGAEKAEVVETTRVYTEEETRRAFEETQIDIPGGGRHGGATMSLWEVMQSDLIPEEQRARLLADFQAGRVTKERMIVIIIEIIERTEVVRQQHAASYEHGRRRLTAEDLVEARVISREAYSLLREGARTLREVLEAESAWRYLHGTGCVAGVYLPGSKQTLSVYQALKKGLLSAEVARLLLEAQAATGFLLDPAKGERLTVDEAVRKGLVGPELHDRLLSAERAVSGYRDPYTEQTISLFEAMRKDLIPAEEALRLLDAQLATGGIMDPRLSIHLPLEVAYQRGYLNKDTHDQLSEPSEVRGYLDPSTDERLSYTQLLRRCRRDEGSGLLLLPLSDARQLTFRGLRKQITVEELVRSHVMDEATALRLQEGLTSVEEVSKNLQKFLEGTSSIAGVLVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYRDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATGGIIDPEESHRLPVDVAYQRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCVTDPQTGLRLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITTSSSDGVVKSMIIDRRSGRQYDIDEALAKSLIDRSALDQYRAGTLSITEFADMLSGSAGGFRSRSSSVGSSSSYPVSPAVSRTPLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPGTGERFPVTEAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTRMSAAQALKKGWLYYEAGQRFLEAQYLTGGLIEPDTPGRVPLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGSGSTAGSRSGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRRYASGPAPSLGGPESAVA", "length": 4673, "header": "tr|A0A287B0Y8-1|A0A287B0Y8_PIG Isoform 1 of Plectin OS=Sus scrofa OX=9823 GN=PLEC PE=3 SV=2 CANONICAL=A0A287B0Y8-1" }, "locus": { "chromosome": "4", "start_pos": 752692, "end_pos": 719778, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038538.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038538.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049773.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049773.2" } ] } }, { "isoform_ac": "A0A287B217-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8/entry#A0A287B217-1", "sequence": { "sequence": "MKIVPDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPMLIDMNKVYRQSNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPDAQDGVKANELQLRWQEYRELVLLLLQWVRQHTAAFEERRFPSSFEEVEVLWCQFLKFKETELPAKEADKNRSKSIYQTLEGAVQAGQLKMPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADALLQSDVRLLAAGKAPQRASEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLRGAARHPELEDSSLRYLQELLAWVEENQRRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARADEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHGFVAAATKELMWLSEKEEEEVAFDWSERNANMVAKKEAYSALMRELELKEKKIKEIQSTGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLRKLQETLRRKYTCDRSITVTRLEDLLQDAQDEKDQLNEYRGHLSGLAKRAKAIVQLKPRNPAHPTRGHVPLLAVCDYKQVEVTVHKGDECQMVGPAQPFHWKVLSSSGSEAAVPSVCFLVPPPNQEAQDAITRLEAQHQALVALWHQLHTDMKSLLAWQSLSRDVQLIRSWSLVTFRTLKPEEQRQALRSLELHYQAFLRDSQDAGGFGPEDRLQAEREYGSCSRHYQQLLQSLEQGEQEESRCQRCISELKDIRLQLEACETRTVHRLRLPLDKEPARECAQRIAEQQKAQAEVEGLGKGVARLSVEAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLRAHEEHLKEAQTVPATLPELEATKAALKKLRAQAEAQQPVFDALRDELRGAQEVGERLQQRHGERDVEVERWRERVTQLLERWQAVLVQTDVRQRELEQLGRQLRYYRESADPLGAWLQDAKRRQEQIQAVPLAHSQAVREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFITETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAEREAQELQRRMQEEVARREEVAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQVEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDETQRKRQAEAELALRVKAEAEAAREKQRALQALEELRLQAEEAERRLRQAEAERARQVQVALETAQRSAEAELQSKQASFVEKTAQLERTLKEEHVTVAQLREEATRRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQQEAAVATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEILALKANFEKAAAGKAELELELGRIRGNAEDTLRSKEQAEQEAARQRQLAAEEERRRREAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLERLRGEAEAARRAAEEAEEARERAEREAAQSRRQLEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLRQKAQVEQELTALRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALVLRDKDNTQRLLQEEAEKMKQVAEEAARLTVAAQEAARLRQLAEEDLAQQRSLAEKMLKEKMQAVQEATRLKAEAELLQQQKDLAQEQARRLQEDKEQMAQQLAQETQGFQRTLETERQRQLEMSAEAERLRLRVAEMSRAQARAEEDAQRFRKQAEEIGERLHRTELATQEKVTLVQTLETQRQQSDQDAERLREAIAELEREKAKLKQEAELLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAQKLREEQQRQQQQMEQEKQQLVASMEEARRRQHAAEEGVRRKQEELQRLEQQRQQQEKLLAEENQRLRERLQHLEEEHRAALAHSEEIAASQAAAAKALPNGRDAPDGPAVEAEPEHAFDGLRRKVPAQRLQEVGILSTEELQRLAQGRTTVAELAQREDVRHYLQGRSGIAGLLLKPANEKLTIYAALRRQLLSPGTALILLEAQAASGFLLDPVRNRWLTVNEAVKEGLVGPELHHKLLSAERAVTGYKDPYTGEQISLFQAMKKDLIVREHGLRLLEAQIATGGIIDPVRSHRVPVAVAYQRGYFDEEMSRVLEDPSDDTKGFFDPNTHENLTYMQLLERCVEDPETGLRLLPLTDQAAKAGELVYTDSEARDVFEKATVSAPFGKFQGRTVTIWELINSEYFTAEQRQELLRQFRTGKVTVEKIIKIVVTVLEEHEQKSQLCFKGLRALVPAAELLESRVIDHDLYRQLQRGERSVQEVAEVEAVRRALRGSSVIAGVWLEEAGRKLSVYEALKKDLLQPEAAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPELHEKLLSAEKAVTGYKDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLCTGGIVDPSKSHRVPLDVACARGYLDEETSTALSAPRDDAKAYRDPSTWEPVSYRQLQQQCRADQLTGLSLLPLSEEAARARQQELYSELQAREAFQKATVEVPVGSFQGRTVTVWELISSEYFSAEQRRELLRQFRTGKVTVEKIIKIVITIVEEAEAVRQERLSFSGLRAPVPASELVAAGVLSQAQFEQLQDGRTSVKDLSEVDSVRTLLQGSGCLAGVYLEDSREKVSVYEAMRRGLLRPSTAALLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGSTISLFQAMKKGLVLREHGLRLLEAQVATGGVIDPVHSHRVPLAVACQRGYLDEELSRVLEDPGDDAKGFFDPNTHENLTYGQLLARCVEDPETGLRLLPLRGAEKAEVVETTRVYTEEETRRAFEETQIDIPGGGRHGGATMSLWEVMQSDLIPEEQRARLLADFQAGRVTKERMIVIIIEIIERTEVVRQQHAASYEHGRRRLTAEDLVEARVISREAYSLLREGARTLREVLEAESAWRYLHGTGCVAGVYLPGSKQTLSVYQALKKGLLSAEVARLLLEAQAATGFLLDPAKGERLTVDEAVRKGLVGPELHDRLLSAERAVSGYRDPYTEQTISLFEAMRKDLIPAEEALRLLDAQLATGGIMDPRLSIHLPLEVAYQRGYLNKDTHDQLSEPSEVRGYLDPSTDERLSYTQLLRRCRRDEGSGLLLLPLSDARQLTFRGLRKQITVEELVRSHVMDEATALRLQEGLTSVEEVSKNLQKFLEGTSSIAGVLVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYRDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATGGIIDPEESHRLPVDVAYQRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCVTDPQTGLRLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITTSSSDGVVKSMIIDRRSGRQYDIDEALAKSLIDRSALDQYRAGTLSITEFADMLSGSAGGFRSRSSSVGSSSSYPVSPAVSRTPLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPGTGERFPVTEAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTRMSAAQALKKGWLYYEAGQRFLEAQYLTGGLIEPDTPGRVPLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGSGSTAGSRSGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRRYASGPAPSLGGPESAVA", "length": 4499, "header": "tr|A0A287B217-1|A0A287B217_PIG Computationally mapped isoform of Plectin OS=Sus scrofa OX=9823 GN=PLEC PE=3 SV=3 CANONICAL=A0A287B0Y8-1" }, "locus": { "chromosome": "4", "start_pos": 752692, "end_pos": 725130, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051979.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051979.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050450.3", "url": "https://www.ensembl.org/id/ENSSSCP00000050450.3" } ] } }, { "isoform_ac": "A0A287B9H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8/entry#A0A287B9H1-1", "sequence": { "sequence": "MAAPGSRGAGVAFAAQGVVLERPCWLDGGCEQARRGYLYRQLCCVDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPMLIDMNKVYRQSNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPDAQDGVKANELQLRWQEYRELVLLLLQWVRQHTAAFEERRFPSSFEEVEVLWCQFLKFKETELPAKEADKNRSKSIYQTLEGAVQAGQLKMPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADALLQSDVRLLAAGKAPQRASEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLRGAARHPELEDSSLRYLQELLAWVEENQRRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARADEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHGFVAAATKELMWLSEKEEEEVAFDWSERNANMVAKKEAYSALMRELELKEKKIKEIQSTGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLRKLQETLRRKYTCDRSITVTRLEDLLQDAQDEKDQLNEYRGHLSGLAKRAKAIVQLKPRNPAHPTRGHVPLLAVCDYKQVEVTVHKGDECQMVGPAQPFHWKVLSSSGSEAAVPSVCFLVPPPNQEAQDAITRLEAQHQALVALWHQLHTDMKSLLAWQSLSRDVQLIRSWSLVTFRTLKPEEQRQALRSLELHYQAFLRDSQDAGGFGPEDRLQAEREYGSCSRHYQQLLQSLEQGEQEESRCQRCISELKDIRLQLEACETRTVHRLRLPLDKEPARECAQRIAEQQKAQAEVEGLGKGVARLSVEAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLRAHEEHLKEAQTVPATLPELEATKAALKKLRAQAEAQQPVFDALRDELRGAQEVGERLQQRHGERDVEVERWRERVTQLLERWQAVLVQTDVRQRELEQLGRQLRYYRESADPLGAWLQDAKRRQEQIQAVPLAHSQAVREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFITETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAEREAQELQRRMQEEVARREEVAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQVEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDETQRKRQAEAELALRVKAEAEAAREKQRALQALEELRLQAEEAERRLRQAEAERARQVQVALETAQRSAEAELQSKQASFVEKTAQLERTLKEEHVTVAQLREEATRRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQQEAAVATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEILALKANFEKAAAGKAELELELGRIRGNAEDTLRSKEQAEQEAARQRQLAAEEERRRREAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLERLRGEAEAARRAAEEAEEARERAEREAAQSRRQLEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLRQKAQVEQELTALRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALVLRDKDNTQRLLQEEAEKMKQVAEEAARLTVAAQEAARLRQLAEEDLAQQRSLAEKMLKEKMQAVQEATRLKAEAELLQQQKDLAQEQARRLQEDKEQMAQQLAQETQGFQRTLETERQRQLEMSAEAERLRLRVAEMSRAQARAEEDAQRFRKQAEEIGERLHRTELATQEKVTLVQTLETQRQQSDQDAERLREAIAELEREKAKLKQEAELLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAQKLREEQQRQQQQMEQEKQQLVASMEEARRRQHAAEEGVRRKQEELQRLEQQRQQQEKLLAEENQRLRERLQHLEEEHRAALAHSEEIAASQAAAAKALPNGRDAPDGPAVEAEPEHAFDGLRRKVPAQRLQEVGILSTEELQRLAQGRTTVAELAQREDVRHYLQGRSGIAGLLLKPANEKLTIYAALRRQLLSPGTALILLEAQAASGFLLDPVRNRWLTVNEAVKEGLVGPELHHKLLSAERAVTGYKDPYTGEQISLFQAMKKDLIVREHGLRLLEAQIATGGIIDPVRSHRVPVAVAYQRGYFDEEMSRVLEDPSDDTKGFFDPNTHENLTYMQLLERCVEDPETGLRLLPLTDQAAKAGELVYTDSEARDVFEKATVSAPFGKFQGRTVTIWELINSEYFTAEQRQELLRQFRTGKVTVEKIIKIVVTVLEEHEQKSQLCFKGLRALVPAAELLESRVIDHDLYRQLQRGERSVQEVAEVEAVRRALRGSSVIAGVWLEEAGRKLSVYEALKKDLLQPEAAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPELHEKLLSAEKAVTGYKDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLCTGGIVDPSKSHRVPLDVACARGYLDEETSTALSAPRDDAKAYRDPSTWEPVSYRQLQQQCRADQLTGLSLLPLSEEAARARQQELYSELQAREAFQKATVEVPVGSFQGRTVTVWELISSEYFSAEQRRELLRQFRTGKVTVEKIIKIVITIVEEAEAVRQERLSFSGLRAPVPASELVAAGVLSQAQFEQLQDGRTSVKDLSEVDSVRTLLQGSGCLAGVYLEDSREKVSVYEAMRRGLLRPSTAALLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGSTISLFQAMKKGLVLREHGLRLLEAQVATGGVIDPVHSHRVPLAVACQRGYLDEELSRVLEDPGDDAKGFFDPNTHENLTYGQLLARCVEDPETGLRLLPLRGAEKAEVVETTRVYTEEETRRAFEETQIDIPGGGRHGGATMSLWEVMQSDLIPEEQRARLLADFQAGRVTKERMIVIIIEIIERTEVVRQQHAASYEHGRRRLTAEDLVEARVISREAYSLLREGARTLREVLEAESAWRYLHGTGCVAGVYLPGSKQTLSVYQALKKGLLSAEVARLLLEAQAATGFLLDPAKGERLTVDEAVRKGLVGPELHDRLLSAERAVSGYRDPYTEQTISLFEAMRKDLIPAEEALRLLDAQLATGGIMDPRLSIHLPLEVAYQRGYLNKDTHDQLSEPSEVRGYLDPSTDERLSYTQLLRRCRRDEGSGLLLLPLSDARQLTFRGLRKQITVEELVRSHVMDEATALRLQEGLTSVEEVSKNLQKFLEGTSSIAGVLVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYRDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATGGIIDPEESHRLPVDVAYQRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCVTDPQTGLRLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITTSSSDGVVKSMIIDRRSGRQYDIDEALAKSLIDRSALDQYRAGTLSITEFADMLSGSAGGFRSRSSSVGSSSSYPVSPAVSRTPLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPGTGERFPVTEAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTRMSAAQALKKGWLYYEAGQRFLEAQYLTGGLIEPDTPGRVPLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGSGSTAGSRSGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRRYASGPAPSLGGPESAVA", "length": 4539, "header": "tr|A0A287B9H1-1|A0A287B0Y8_PIG Computationally mapped isoform of Plectin OS=Sus scrofa OX=9823 GN=PLEC PE=3 SV=2 CANONICAL=A0A287B0Y8-1" }, "locus": { "chromosome": "4", "start_pos": 752692, "end_pos": 727403, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050712.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050712.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052979.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052979.2" } ] } }, { "isoform_ac": "A0A287BN04-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8/entry#A0A287BN04-1", "sequence": { "sequence": "MDPSRAIQHEISSLKDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPMLIDMNKVYRQSNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPDAQDGVKANELQLRWQEYRELVLLLLQWVRQHTAAFEERRFPSSFEEVEVLWCQFLKFKETELPAKEADKNRSKSIYQTLEGAVQAGQLKMPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADALLQSDVRLLAAGKAPQRASEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLRGAARHPELEDSSLRYLQELLAWVEENQRRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARADEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHGFVAAATKELMWLSEKEEEEVAFDWSERNANMVAKKEAYSALMRELELKEKKIKEIQSTGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLRKLQETLRRKYTCDRSITVTRLEDLLQDAQDEKDQLNEYRGHLSGLAKRAKAIVQLKPRNPAHPTRGHVPLLAVCDYKQVEVTVHKGDECQMVGPAQPFHWKVLSSSGSEAAVPSVCFLVPPPNQEAQDAITRLEAQHQALVALWHQLHTDMKSLLAWQSLSRDVQLIRSWSLVTFRTLKPEEQRQALRSLELHYQAFLRDSQDAGGFGPEDRLQAEREYGSCSRHYQQLLQSLEQGEQEESRCQRCISELKDIRLQLEACETRTVHRLRLPLDKEPARECAQRIAEQQKAQAEVEGLGKGVARLSVEAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLRAHEEHLKEAQTVPATLPELEATKAALKKLRAQAEAQQPVFDALRDELRGAQEVGERLQQRHGERDVEVERWRERVTQLLERWQAVLVQTDVRQRELEQLGRQLRYYRESADPLGAWLQDAKRRQEQIQAVPLAHSQAVREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFITETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAEREAQELQRRMQEEVARREEVAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQVEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDETQRKRQAEAELALRVKAEAEAAREKQRALQALEELRLQAEEAERRLRQAEAERARQVQVALETAQRSAEAELQSKQASFVEKTAQLERTLKEEHVTVAQLREEATRRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQQEAAVATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEILALKANFEKAAAGKAELELELGRIRGNAEDTLRSKEQAEQEAARQRQLAAEEERRRREAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLERLRGEAEAARRAAEEAEEARERAEREAAQSRRQLEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLRQKAQVEQELTALRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALVLRDKDNTQRLLQEEAEKMKQVAEEAARLTVAAQEAARLRQLAEEDLAQQRSLAEKMLKEKMQAVQEATRLKAEAELLQQQKDLAQEQARRLQEDKEQMAQQLAQETQGFQRTLETERQRQLEMSAEAERLRLRVAEMSRAQARAEEDAQRFRKQAEEIGERLHRTELATQEKVTLVQTLETQRQQSDQDAERLREAIAELEREKAKLKQEAELLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAQKLREEQQRQQQQMEQEKQQLVASMEEARRRQHAAEEGVRRKQEELQRLEQQRQQQEKLLAEENQRLRERLQHLEEEHRAALAHSEEIAASQAAAAKALPNGRDAPDGPAVEAEPEHAFDGLRRKVPAQRLQEVGILSTEELQRLAQGRTTVAELAQREDVRHYLQGRSGIAGLLLKPANEKLTIYAALRRQLLSPGTALILLEAQAASGFLLDPVRNRWLTVNEAVKEGLVGPELHHKLLSAERAVTGYKDPYTGEQISLFQAMKKDLIVREHGLRLLEAQIATGGIIDPVRSHRVPVAVAYQRGYFDEEMSRVLEDPSDDTKGFFDPNTHENLTYMQLLERCVEDPETGLRLLPLTDQAAKAGELVYTDSEARDVFEKATVSAPFGKFQGRTVTIWELINSEYFTAEQRQELLRQFRTGKVTVEKIIKIVVTVLEEHEQKSQLCFKGLRALVPAAELLESRVIDHDLYRQLQRGERSVQEVAEVEAVRRALRGSSVIAGVWLEEAGRKLSVYEALKKDLLQPEAAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPELHEKLLSAEKAVTGYKDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLCTGGIVDPSKSHRVPLDVACARGYLDEETSTALSAPRDDAKAYRDPSTWEPVSYRQLQQQCRADQLTGLSLLPLSEEAARARQQELYSELQAREAFQKATVEVPVGSFQGRTVTVWELISSEYFSAEQRRELLRQFRTGKVTVEKIIKIVITIVEEAEAVRQERLSFSGLRAPVPASELVAAGVLSQAQFEQLQDGRTSVKDLSEVDSVRTLLQGSGCLAGVYLEDSREKVSVYEAMRRGLLRPSTAALLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGSTISLFQAMKKGLVLREHGLRLLEAQVATGGVIDPVHSHRVPLAVACQRGYLDEELSRVLEDPGDDAKGFFDPNTHENLTYGQLLARCVEDPETGLRLLPLRGAEKAEVVETTRVYTEEETRRAFEETQIDIPGGGRHGGATMSLWEVMQSDLIPEEQRARLLADFQAGRVTKERMIVIIIEIIERTEVVRQQHAASYEHGRRRLTAEDLVEARVISREAYSLLREGARTLREVLEAESAWRYLHGTGCVAGVYLPGSKQTLSVYQALKKGLLSAEVARLLLEAQAATGFLLDPAKGERLTVDEAVRKGLVGPELHDRLLSAERAVSGYRDPYTEQTISLFEAMRKDLIPAEEALRLLDAQLATGGIMDPRLSIHLPLEVAYQRGYLNKDTHDQLSEPSEVRGYLDPSTDERLSYTQLLRRCRRDEGSGLLLLPLSDARQLTFRGLRKQITVEELVRSHVMDEATALRLQEGLTSVEEVSKNLQKFLEGTSSIAGVLVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYRDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATGGIIDPEESHRLPVDVAYQRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCVTDPQTGLRLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITTSSSDGVVKSMIIDRRSGRQYDIDEALAKSLIDRSALDQYRAGTLSITEFADMLSGSAGGFRSRSSSVGSSSSYPVSPAVSRTPLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPGTGERFPVTEAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTRMSAAQALKKGWLYYEAGQRFLEAQYLTGGLIEPDTPGRVPLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGSGSTAGSRSGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRRYASGPAPSLGGPESAVA", "length": 4509, "header": "tr|A0A287BN04-1|A0A287BN04_PIG Computationally mapped isoform of Plectin OS=Sus scrofa OX=9823 GN=PLEC PE=3 SV=2 CANONICAL=A0A287B0Y8-1" }, "locus": { "chromosome": "4", "start_pos": 752692, "end_pos": 716706, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044959.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044959.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057461.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057461.2" } ] } }, { "isoform_ac": "A0A287BNK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8/entry#A0A287BNK7-1", "sequence": { "sequence": "MSQHRLRVPEPEGLGQKRTSSEDNLYLAVLRASEGKKDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRERDVIRSSRLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPMLIDMNKVYRQSNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPDAQDGVKANELQLRWQEYRELVLLLLQWVRQHTAAFEERRFPSSFEEVEVLWCQFLKFKETELPAKEADKNRSKSIYQTLEGAVQAGQLKMPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADALLQSDVRLLAAGKAPQRASEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLRGAARHPELEDSSLRYLQELLAWVEENQRRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARADEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHGFVAAATKELMWLSEKEEEEVAFDWSERNANMVAKKEAYSALMRELELKEKKIKEIQSTGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLRKLQETLRRKYTCDRSITVTRLEDLLQDAQDEKDQLNEYRGHLSGLAKRAKAIVQLKPRNPAHPTRGHVPLLAVCDYKQVEVTVHKGDECQMVGPAQPFHWKVLSSSGSEAAVPSVCFLVPPPNQEAQDAITRLEAQHQALVALWHQLHTDMKSLLAWQSLSRDVQLIRSWSLVTFRTLKPEEQRQALRSLELHYQAFLRDSQDAGGFGPEDRLQAEREYGSCSRHYQQLLQSLEQGEQEESRCQRCISELKDIRLQLEACETRTVHRLRLPLDKEPARECAQRIAEQQKAQAEVEGLGKGVARLSVEAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLRAHEEHLKEAQTVPATLPELEATKAALKKLRAQAEAQQPVFDALRDELRGAQEVGERLQQRHGERDVEVERWRERVTQLLERWQAVLVQTDVRQRELEQLGRQLRYYRESADPLGAWLQDAKRRQEQIQAVPLAHSQAVREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFITETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAEREAQELQRRMQEEVARREEVAVDAQQQKRSIQEELQHLRQSSEAEIQAKARQVEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDETQRKRQAEAELALRVKAEAEAAREKQRALQALEELRLQAEEAERRLRQAEAERARQVQVALETAQRSAEAELQSKQASFVEKTAQLERTLKEEHVTVAQLREEATRRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQQEAAVATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEILALKANFEKAAAGKAELELELGRIRGNAEDTLRSKEQAEQEAARQRQLAAEEERRRREAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLERLRGEAEAARRAAEEAEEARERAEREAAQSRRQLEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLRQKAQVEQELTALRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALVLRDKDNTQRLLQEEAEKMKQVAEEAARLTVAAQEAARLRQLAEEDLAQQRSLAEKMLKEKMQAVQEATRLKAEAELLQQQKDLAQEQARRLQEDKEQMAQQLAQETQGFQRTLETERQRQLEMSAEAERLRLRVAEMSRAQARAEEDAQRFRKQAEEIGERLHRTELATQEKVTLVQTLETQRQQSDQDAERLREAIAELEREKAKLKQEAELLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAQKLREEQQRQQQQMEQEKQQLVASMEEARRRQHAAEEGVRRKQEELQRLEQQRQQQEKLLAEENQRLRERLQHLEEEHRAALAHSEEIAASQAAAAKALPNGRDAPDGPAVEAEPEHAFDGLRRKVPAQRLQEVGILSTEELQRLAQGRTTVAELAQREDVRHYLQGRSGIAGLLLKPANEKLTIYAALRRQLLSPGTALILLEAQAASGFLLDPVRNRWLTVNEAVKEGLVGPELHHKLLSAERAVTGYKDPYTGEQISLFQAMKKDLIVREHGLRLLEAQIATGGIIDPVRSHRVPVAVAYQRGYFDEEMSRVLEDPSDDTKGFFDPNTHENLTYMQLLERCVEDPETGLRLLPLTDQAAKAGELVYTDSEARDVFEKATVSAPFGKFQGRTVTIWELINSEYFTAEQRQELLRQFRTGKVTVEKIIKIVVTVLEEHEQKSQLCFKGLRALVPAAELLESRVIDHDLYRQLQRGERSVQEVAEVEAVRRALRGSSVIAGVWLEEAGRKLSVYEALKKDLLQPEAAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPELHEKLLSAEKAVTGYKDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLCTGGIVDPSKSHRVPLDVACARGYLDEETSTALSAPRDDAKAYRDPSTWEPVSYRQLQQQCRADQLTGLSLLPLSEEAARARQQELYSELQAREAFQKATVEVPVGSFQGRTVTVWELISSEYFSAEQRRELLRQFRTGKVTVEKIIKIVITIVEEAEAVRQERLSFSGLRAPVPASELVAAGVLSQAQFEQLQDGRTSVKDLSEVDSVRTLLQGSGCLAGVYLEDSREKVSVYEAMRRGLLRPSTAALLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGSTISLFQAMKKGLVLREHGLRLLEAQVATGGVIDPVHSHRVPLAVACQRGYLDEELSRVLEDPGDDAKGFFDPNTHENLTYGQLLARCVEDPETGLRLLPLRGAEKAEVVETTRVYTEEETRRAFEETQIDIPGGGRHGGATMSLWEVMQSDLIPEEQRARLLADFQAGRVTKERMIVIIIEIIERTEVVRQQHAASYEHGRRRLTAEDLVEARVISREAYSLLREGARTLREVLEAESAWRYLHGTGCVAGVYLPGSKQTLSVYQALKKGLLSAEVARLLLEAQAATGFLLDPAKGERLTVDEAVRKGLVGPELHDRLLSAERAVSGYRDPYTEQTISLFEAMRKDLIPAEEALRLLDAQLATGGIMDPRLSIHLPLEVAYQRGYLNKDTHDQLSEPSEVRGYLDPSTDERLSYTQLLRRCRRDEGSGLLLLPLSDARQLTFRGLRKQITVEELVRSHVMDEATALRLQEGLTSVEEVSKNLQKFLEGTSSIAGVLVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYRDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATGGIIDPEESHRLPVDVAYQRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCVTDPQTGLRLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITTSSSDGVVKSMIIDRRSGRQYDIDEALAKSLIDRSALDQYRAGTLSITEFADMLSGSAGGFRSRSSSVGSSSSYPVSPAVSRTPLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPGTGERFPVTEAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTRMSAAQALKKGWLYYEAGQRFLEAQYLTGGLIEPDTPGRVPLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGSGSTAGSRSGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRRYASGPAPSLGGPESAVA", "length": 4543, "header": "tr|A0A287BNK7-1|A0A287BNK7_PIG Computationally mapped isoform of Plectin OS=Sus scrofa OX=9823 GN=PLEC PE=3 SV=3 CANONICAL=A0A287B0Y8-1" }, "locus": { "chromosome": "4", "start_pos": 752692, "end_pos": 730137, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055970.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055970.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058201.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058201.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8C7", "url": "https://www.uniprot.org/uniprotkb/A0A287A8C7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2022090", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "resource": "Reactome", "description": "Assembly of collagen fibrils and other multimeric structures" }, { "id": "R-SSC-264870", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-264870", "resource": "Reactome", "description": "Caspase-mediated cleavage of cytoskeletal proteins" }, { "id": "R-SSC-446107", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446107", "resource": "Reactome", "description": "Type I hemidesmosome assembly" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 32, "go_terms": [ { "name": "skeletal myofibril assembly", "id": "GO:0014866", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014866", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "leukocyte migration involved in immune response", "id": "GO:0002522", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002522", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "establishment of skin barrier", "id": "GO:0061436", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061436", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "response to food", "id": "GO:0032094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032094", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "cell morphogenesis", "id": "GO:0000902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000902", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "multicellular organism growth", "id": "GO:0035264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035264", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "skeletal muscle fiber development", "id": "GO:0048741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048741", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "regulation of vascular permeability", "id": "GO:0043114", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043114", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "transmission of nerve impulse", "id": "GO:0019226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019226", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "keratinocyte development", "id": "GO:0003334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003334", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "adherens junction organization", "id": "GO:0034332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034332", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "cellular response to mechanical stimulus", "id": "GO:0071260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071260", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "mitochondrion organization", "id": "GO:0007005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007005", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y8", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y8" } ], "pmid": "" }, { "name": "sarcomere organization", "id": "GO:0045214", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045214", "evidence": [ { "database": "UniProtKB", "id": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF01421", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8941237", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8941237", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9762292", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9762292", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AHV9", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUT2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAW4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAW4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLR0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1M6U2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1M6U2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1M6U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1M6U2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQF1", "url": "https://www.uniprot.org/uniprotkb/F1RQF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQF1-1", "url": "https://www.uniprot.org/uniprotkb/F1RQF1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRGVGTAQLCVLVLALQGWTRRGSGDGSPQLQHELIIPQWKTAESPVREKHPLKAELRVMAEGRELILDLEKNEHLFAPDYTETHYTPSGNPRTTTLKSEDHCFYHGTVRKAEESSVTLSTCRGMRGLITVSSNLSYIIEPLPGSEGHHLIYRSEHLKLPLGNCGFQHPKPTARDWALQFTNQTKKRPRRMKREDLHSMKYVELYLVADYAEFQKNRRDQDATKHKLMEIANYVDKFYRSLNIRIALVGLEVWTHGNMCEVSENPYSTLWSFLSWRRKLLAQKNHDNAQLITGMSFHGTTIGLAPLMAMCSVYQSGGVNMDHSENAVGVAATMAHEMGHNFGMSHDSADCCSASAADGGCIMAAATGHPFPRVFNRCNRRELDRYLQSGGGMCLSNMPDTRTLYGGRRCGNGYLEDGEECDCGEEEECDNPCCNASNCTLREGAECAHGSCCHRCKLLAPGTLCREQARQCDLPEFCTGKSPHCPTNFYQMDGTPCEGGQAYCYNGMCLTYQEQCQQLWGPGARPAPDLCFEKVNVAGDTFGNCGKDLNGEHRKCNMRDAKCGKIQCQSSEARPLESNAVPIDTTIIMNGRQIRCRGTHVYRGPEEEGDMLDPGLVMTGTKCGYNHICFEGQCRNTSFFETEGCGKKCNGHGVCNNNQNCHCFRGWAPPFCNTPGQGGSIDSGPMPPEGAGPVVAGVFSAIFVLAVLVLMYHCCKQKNKLGYLKPLALPSTLRQQFSCPFRVSHNSGTGHANPTFKLQTPQGKRKVTNTPETLRKPSQPPPRPPPDYLHGGSPPVPLPAHLSRAARNSPGAGSPVERKESSRRPPPTRPAPPAPKCVLSQDFSRPRPPQKALPANPVPGRKNLPRPGGPSVLQPTVSSPQQTQPLPAPALKFPEYRSQRAMGMTSSKI", "length": 909, "header": "tr|A0A5G2QUT2-1|A0A5G2QUT2_PIG Isoform 1 of ADAM metallopeptidase domain 19 OS=Sus scrofa OX=9823 GN=ADAM19 PE=4 SV=2 CANONICAL=A0A5G2QUT2-1" }, "isoforms": [ { "isoform_ac": "A0A287AHV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT2/entry#A0A287AHV9-1", "sequence": { "sequence": "MPRGVGTAQLCVLVLALQGWTRRGSGDGSPQLQHELIIPQWKTAESPVREKHPLKAELRVMAEGRELILDLEKNEHLFAPDYTETHYTPSGNPRTTTLKSEDHCFYHGTVRKAEESSVTLSTCRGMRGLITVSSNLSYIIEPLPGSEGHHLIYRSEHLKLPLGNCGFQHPKPTARDWALQFTNQTKKRPRRMKREDLHSMKYVELYLVADYAEFQKNRRDQDATKHKLMEIANYVDKPCPCLKASLCPVSVFVSLSQVALAPPPDRFYRSLNIRIALVGLEVWTHGNMCEVSENPYSTLWSFLSWRRKLLAQKNHDNAQLITGMSFHGTTIGLAPLMAMCSVYQSGGVNMDHSENAVGVAATMAHEMGHNFGMSHDSADCCSASAADGGCIMAAATGHPFPRVFNRCNRRELDRYLQSGGGMCLSNMPDTRTLYGGRRCGNGYLEDGEECDCGEEEECDNPCCNASNCTLREGAECAHGSCCHRCKLLAPGTLCREQARQCDLPEFCTGKSPHCPTNFYQMDGTPCEGGQAYCYNGMCLTYQEQCQQLWGPGARPAPDLCFEKVNVAGDTFGNCGKDLNGEHRKCNMRDAKCGKIQCQSSEARPLESNAVPIDTTIIMNGRQIRCRGTHVYRGPEEEGDMLDPGLVMTGTKCGYNHICFEGQCRNTSFFETEGCGKKCNGHGVCNNNQNCHCFRGWAPPFCNTPGQGGSIDSGPMPPEGAGPVVAGVFSAIFVLAVLVLMYHCCKQKNKLGYLKPLALPSTLRQQFSCPFRVSHNSGTGHANPTFKLQTPQGKRKVTNTPETLRKPSQPPPRPPPDYLHGGSPPVPLPAHLSRAARNSPGAGSPVERKESSRRPPPTRPAPPAPKCVLSQDFSRPRPPQKALPANPVPGRKNLPRPGGPSVLQPTVSSPQQTQPLPAPALKFPEYRSQRAMGMTSSKI", "length": 938, "header": "tr|A0A287AHV9-1|A0A5G2QUT2_PIG Computationally mapped isoform of ADAM metallopeptidase domain 19 OS=Sus scrofa OX=9823 GN=ADAM19 PE=4 SV=3 CANONICAL=A0A5G2QUT2-1" }, "locus": { "chromosome": "16", "start_pos": 65811036, "end_pos": 65715982, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064509.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064509.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043454.3", "url": "https://www.ensembl.org/id/ENSSSCP00000043454.3" } ] } }, { "isoform_ac": "A0A5G2QUT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT2/entry#A0A5G2QUT2-1", "sequence": { "sequence": "MPRGVGTAQLCVLVLALQGWTRRGSGDGSPQLQHELIIPQWKTAESPVREKHPLKAELRVMAEGRELILDLEKNEHLFAPDYTETHYTPSGNPRTTTLKSEDHCFYHGTVRKAEESSVTLSTCRGMRGLITVSSNLSYIIEPLPGSEGHHLIYRSEHLKLPLGNCGFQHPKPTARDWALQFTNQTKKRPRRMKREDLHSMKYVELYLVADYAEFQKNRRDQDATKHKLMEIANYVDKFYRSLNIRIALVGLEVWTHGNMCEVSENPYSTLWSFLSWRRKLLAQKNHDNAQLITGMSFHGTTIGLAPLMAMCSVYQSGGVNMDHSENAVGVAATMAHEMGHNFGMSHDSADCCSASAADGGCIMAAATGHPFPRVFNRCNRRELDRYLQSGGGMCLSNMPDTRTLYGGRRCGNGYLEDGEECDCGEEEECDNPCCNASNCTLREGAECAHGSCCHRCKLLAPGTLCREQARQCDLPEFCTGKSPHCPTNFYQMDGTPCEGGQAYCYNGMCLTYQEQCQQLWGPGARPAPDLCFEKVNVAGDTFGNCGKDLNGEHRKCNMRDAKCGKIQCQSSEARPLESNAVPIDTTIIMNGRQIRCRGTHVYRGPEEEGDMLDPGLVMTGTKCGYNHICFEGQCRNTSFFETEGCGKKCNGHGVCNNNQNCHCFRGWAPPFCNTPGQGGSIDSGPMPPEGAGPVVAGVFSAIFVLAVLVLMYHCCKQKNKLGYLKPLALPSTLRQQFSCPFRVSHNSGTGHANPTFKLQTPQGKRKVTNTPETLRKPSQPPPRPPPDYLHGGSPPVPLPAHLSRAARNSPGAGSPVERKESSRRPPPTRPAPPAPKCVLSQDFSRPRPPQKALPANPVPGRKNLPRPGGPSVLQPTVSSPQQTQPLPAPALKFPEYRSQRAMGMTSSKI", "length": 909, "header": "tr|A0A5G2QUT2-1|A0A5G2QUT2_PIG Isoform 1 of ADAM metallopeptidase domain 19 OS=Sus scrofa OX=9823 GN=ADAM19 PE=4 SV=2 CANONICAL=A0A5G2QUT2-1" }, "locus": { "chromosome": "16", "start_pos": 65811036, "end_pos": 65715982, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082057.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082057.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067904.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067904.2" } ] } }, { "isoform_ac": "A0A5G2RAW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT2/entry#A0A5G2RAW4-1", "sequence": { "sequence": "MPRGVGTAQLCVLVLALQGWTRRGSGDGSPQLQHELIIPQWKTAESPVREKHPLKAELRVMAEGRELILDLEKNEHLFAPDYTETHYTPSGNPRTTTLKSEDHCFYHGTVRKAEESSVTLSTCRGMRILPPQGSHCYQFLGYPFRNTASEKGHRGLITVSSNLSYIIEPLPGSEGHHLIYRSEHLKLPLGNCGFQHPKPTARDWALQFTNQTKKRPRRMKREDLHSMKYVELYLVADYAEFQKNRRDQDATKHKLMEIANYVDKFYRSLNIRIALVGLEVWTHGNMCEVSENPYSTLWSFLSWRRKLLAQKNHDNAQLITGMSFHGTTIGLAPLMAMCSVYQSGGVNMDHSENAVGVAATMAHEMGHNFGMSHDSADCCSASAADGGCIMAAATGHPFPRVFNRCNRRELDRYLQSGGGMCLSNMPDTRTLYGGRRCGNGYLEDGEECDCGEEEECDNPCCNASNCTLREGAECAHGSCCHRCKLLAPGTLCREQARQCDLPEFCTGKSPHCPTNFYQMDGTPCEGGQAYCYNGMCLTYQEQCQQLWGPGARPAPDLCFEKVNVAGDTFGNCGKDLNGEHRKCNMRDAKCGKIQCQSSEARPLESNAVPIDTTIIMNGRQIRCRGTHVYRGPEEEGDMLDPGLVMTGTKCGYNHICFEGQCRNTSFFETEGCGKKCNGHGVCNNNQNCHCFRGWAPPFCNTPGQGGSIDSGPMPPEGAGPVVAGVFSAIFVLAVLVLMYHCCKQKNKLGYLKPLALPSTLRQQFSCPFRVSHNSGTGHANPTFKLQTPQGKRKVTNTPETLRKPSQPPPRPPPDYLHGGSPPVPLPAHLSRAARNSPGAGSPVERKESSRRPPPTRPAPPAPKCVLSQDFSRPRPPQKALPANPVPGRKNLPRPGGPSVLQPTVSSPQQTQPLPAPALKFPEYRSQRAMGMTSSKI", "length": 936, "header": "tr|A0A5G2RAW4-1|A0A5G2RAW4_PIG Computationally mapped isoform of ADAM metallopeptidase domain 19 OS=Sus scrofa OX=9823 GN=ADAM19 PE=4 SV=2 CANONICAL=A0A5G2QUT2-1" }, "locus": { "chromosome": "16", "start_pos": 65811036, "end_pos": 65715982, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088804.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088804.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067748.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067748.2" } ] } }, { "isoform_ac": "A0A5G2RLR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT2/entry#A0A5G2RLR0-1", "sequence": { "sequence": "MPRGVGTAQLCVLVLALQGWTRRGSGDGSPQLQHELIIPQWKTAESPVREKHPLKAELRVMAEGRELILDLEKNEHLFAPDYTETHYTPSGNPRTTTLKSEDHCFYHGTVRKAEESSVTLSTCRGMRGLITVSSNLSYIIEPLPGSEGHHLIYRSEHLKLPLGNCGFQHPKPTARDWALQFTNQTKKRPRRMKREDLHSMKYVELYLVADYAEFQKNRRDQDATKHKLMEIANYVDKFYRSLNIRIALVGLEVWTHGNMCEVSENPYSTLWSFLSWRRKLLAQKNHDNAQLITGMSFHGTTIGLAPLMAMCSVYQSGGVNMDHSENAVGVAATMAHEMGHNFGMSHDSADCCSASAADGGCIMAAATGHPFPRVFNRCNRRELDRYLQSGGGMCLSNMPDTRTLYGGRRCGNGYLEDGEECDCGEEEECDNPCCNASNCTLREGAECAHGSCCHRGWAPPFCNTPGQGGSIDSGPMPPEGAGPVVAGVFSAIFVLAVLVLMYHCCKQKNKLGYLKPLALPSTLRQQFSCPFRVSHNSGTGHANPTFKLQTPQGKRKVTNTPETLRKPSQPPPRPPPDYLHGGSPPVPLPAHLSRAARNSPGAGSPVERKESSRRPPPTRPAPPAPKCVLSQDFSRPRPPQKALPANPVPGRKNLPRPGGPSVLQPTVSSPQQTQPLPAPALKFPEYRSQRAMGMTSSKI", "length": 699, "header": "tr|A0A5G2RLR0-1|A0A5G2RLR0_PIG Computationally mapped isoform of ADAM metallopeptidase domain 19 OS=Sus scrofa OX=9823 GN=ADAM19 PE=4 SV=2 CANONICAL=A0A5G2QUT2-1" }, "locus": { "chromosome": "16", "start_pos": 65811036, "end_pos": 65715982, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077792.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077792.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073329.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073329.2" } ] } }, { "isoform_ac": "A0A8D1M6U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT2/entry#A0A8D1M6U2-1", "sequence": { "sequence": "MPRGVGTAQLCVLVLALQGWTRRGSGDGSPQLQHELIIPQWKTAESPVREKHPLKAELRVMAEGRELILDLEKNEHLFAPDYTETHYTPSGNPRTTTLKSEDHCFYHGTVRKAEESSVTLSTCRGMRGLITVSSNLSYIIEPLPGSEGHHLIYRSEHLKLPLGNCGFQHPKPTARDWALQFTNQTKKRPRRMKREDLHSMKYVELYLVADYAEFQKNRRDQDATKHKLMEIANYVDKFYRSLNIRIALVGLEVWTHGNMCEVSENPYSTLWSFLSWRRKLLAQKNHDNAQLITGMSFHGTTIGLAPLMAMCSVYQSGGVNMDHSENAVGVAATMAHEMGHNFGMSHDSADCCSASAADGGCIMAAATGHPFPRVFNRCNRRELDRYLQSGGGMCLSNMPDTRTLYGGRRCGNGYLEDGEECDCGEEEECDNPCCNASNCTLREGAECAHGSCCHRCKLLAPGTLCREQARQCDLPEFCTGKSPHCPTNFYQMDGTPCEGGQAYCYNGMCLTYQEQCQQLWGPESWLQYGISG", "length": 532, "header": "tr|A0A8D1M6U2-1|A0A5G2QUT2_PIG Computationally mapped isoform of ADAM metallopeptidase domain 19 OS=Sus scrofa OX=9823 GN=ADAM19 PE=4 SV=1 CANONICAL=A0A5G2QUT2-1" }, "locus": { "chromosome": "16", "start_pos": 65785313, "end_pos": 65715982, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077836.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077836.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063667.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063667.1" } ] } }, { "isoform_ac": "F1RQF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT2/entry#F1RQF1-1", "sequence": { "sequence": "MLALQGWTRRGSGDGSPQLQHELIIPQWKTAESPVREKHPLKAELRVMAEGRELILDLEKNEHLFAPDYTETHYTPSGNPRTTTLKSEDHCFYHGTVRKAEESSVTLSTCRGMRGLITVSSNLSYIIEPLPGSEGHHLIYRSEHLKLPLGNCGFQHPKPTARDWALQFTNQTKKRPRRMKREDLHSMKYVELYLVADYAEFQKNRRDQDATKHKLMEIANYVDKFYRSLNIRIALVGLEVWTHGNMCEVSENPYSTLWSFLSWRRKLLAQKNHDNAQLITGMSFHGTTIGLAPLMAMCSVYQSGGVNMDHSENAVGVAATMAHEMGHNFGMSHDSADCCSASAADGGCIMAAATGHPFPRVFNRCNRRELDRYLQSGGGMCLSNMPDTRTLYGGRRCGNGYLEDGEECDCGEEEECDNPCCNASNCTLREGAECAHGSCCHRCKLLAPGTLCREQARQCDLPEFCTGKSPHCPTNFYQMDGTPCEGGQAYCYNGMCLTYQEQCQQLWGPGARPAPDLCFEKVNVAGDTFGNCGKDLNGEHRKCNMRDAKCGKIQCQSSEARPLESNAVPIDTTIIMNGRQIRCRGTHVYRGPEEEGDMLDPGLVMTGTKCGYNHICFEGQCRNTSFFETEGCGKKCNGHGVCNNNQNCHCFRGWAPPFCNTPGQGGSIDSGPMPPEGAGPVVAGVFSAIFVLAVLVLMYHCCKQKNKLGYLKPLALPSTLRQQFSCPFRVSHNSGTGHANPTFKLQTPQGKRKVTNTPETLRKPSQPPPRPPPDYLHGGSPPVPLPAHLSRAARNSPGAGSPVERKESSRRPPPTRPAPPAPKCVLSQDFSRPRPPQKALPANPVPGRKNLPRPGGPSVLQPTVSSPQQTQPLPAPALKFPEYRSQRAMGMTSSKI", "length": 896, "header": "tr|F1RQF1-1|A0A5G2QUT2_PIG Computationally mapped isoform of ADAM metallopeptidase domain 19 OS=Sus scrofa OX=9823 GN=ADAM19 PE=4 SV=3 CANONICAL=A0A5G2QUT2-1" }, "locus": { "chromosome": "16", "start_pos": 65811036, "end_pos": 65715552, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018565.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018565.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018065.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018065.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., 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{ "id": "IPR050089", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050089", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43599", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43599", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43599:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43599:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00731", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00731", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01259", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01259", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-73817", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73817", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "10792", "url": 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTV5", "url": "https://www.uniprot.org/uniprotkb/F1RTV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTV5-1", "url": "https://www.uniprot.org/uniprotkb/F1RTV5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQTRLGVLNIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNTITSCVFQLLQEAGIKTAFTRKCGETAFIAPKCEMIPIEWVCRRIATGSFLKRNPGVKEGYKFYPPKVEMFFKDDANNDPQWSEEQLIAANFCFAGLVIGQTEVDVMSHATQAIFEILEKSWLPQNCTLVDMKVQIQWRFEKIVLADVIDNDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKTESQCRVVVLMGSTSDLSHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAFPVISCPPLSPDWGAQDVWSSLRLPSGLGCSTILSPEGSAQFAAQIFGLNNHLVWAKLRANVLNTWISLKQADKKIREGNL", "length": 424, "header": "tr|A0A5G2QTY6-1|A0A5G2QTY6_PIG Isoform 1 of Bifunctional phosphoribosylaminoimidazole carboxylase/phosphoribosylaminoimidazole succinocarboxamide synthetase OS=Sus scrofa OX=9823 GN=PAICS PE=1 SV=1 CANONICAL=A0A5G2QTY6-1" }, "isoforms": [ { "isoform_ac": "A0A287AI68-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6/entry#A0A287AI68-1", "sequence": { "sequence": "GAPAALRLLNIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNTITSCVFQLLQEAGIKTAFTRKCGETAFIAPKCEMIPIEWVCRRIATGSFLKRNPGVKEGYKFYPPKVEMFFKDDANNDPQWSEEQLIAANFCFAGLVIGQTEVDVMSHATQAIFEILEKSWLPQNCTLVDMKVQIQWRFEKIVLADVIDNDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKTESQCRVVVLMGSTSDLSHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAFPVISCPPLSPDWGAQDVWSSLRLPSGLGCSTILSPEGSAQFAAQIFGLNNHLVWAKLRANVLNTWISLKQADKKIREGNL", "length": 425, "header": "tr|A0A287AI68-1|A0A5G2QTY6_PIG Computationally mapped isoform of Bifunctional phosphoribosylaminoimidazole carboxylase/phosphoribosylaminoimidazole succinocarboxamide synthetase OS=Sus scrofa OX=9823 GN=PAICS PE=1 SV=1 CANONICAL=A0A5G2QTY6-1" }, "locus": { "chromosome": "8", "start_pos": 55720418, "end_pos": 55700956, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047001.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047001.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043575.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043575.1" } ] } }, { "isoform_ac": "A0A5G2QTY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6/entry#A0A5G2QTY6-1", "sequence": { "sequence": "MQTRLGVLNIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNTITSCVFQLLQEAGIKTAFTRKCGETAFIAPKCEMIPIEWVCRRIATGSFLKRNPGVKEGYKFYPPKVEMFFKDDANNDPQWSEEQLIAANFCFAGLVIGQTEVDVMSHATQAIFEILEKSWLPQNCTLVDMKVQIQWRFEKIVLADVIDNDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKTESQCRVVVLMGSTSDLSHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAFPVISCPPLSPDWGAQDVWSSLRLPSGLGCSTILSPEGSAQFAAQIFGLNNHLVWAKLRANVLNTWISLKQADKKIREGNL", "length": 424, "header": "tr|A0A5G2QTY6-1|A0A5G2QTY6_PIG Isoform 1 of Bifunctional phosphoribosylaminoimidazole carboxylase/phosphoribosylaminoimidazole succinocarboxamide synthetase OS=Sus scrofa OX=9823 GN=PAICS PE=1 SV=1 CANONICAL=A0A5G2QTY6-1" }, "locus": { "chromosome": "8", "start_pos": 55720418, "end_pos": 55703859, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075971.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075971.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061590.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061590.1" } ] } }, { "isoform_ac": "A0A5G2R2Q4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6/entry#A0A5G2R2Q4-1", "sequence": { "sequence": "FISTVLNIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNTITSCVFQLLQEAGIKTAFTRKCGETAFIAPKCEMIPIEWVCRRIATGSFLKRNPGVKEGYKFYPPKVEMFFKDDANNDPQWSEEQLIAANFCFAGLVIGQTEVDVMSHATQAIFEILEKSWLPQNCTLVDMKVQIQWRFEKIVLADVIDNDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKTESQCRVVVLMGSTSDLSHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAFPVISCPPLSPDWGAQDVWSSLRLPSGLGCSTILSPEGSAQFAAQIFGLNNHLVWAKLRANVLNTWISLKQADKKIREGNL", "length": 422, "header": "tr|A0A5G2R2Q4-1|A0A5G2R2Q4_PIG Computationally mapped isoform of Bifunctional phosphoribosylaminoimidazole carboxylase/phosphoribosylaminoimidazole succinocarboxamide synthetase OS=Sus scrofa OX=9823 GN=PAICS PE=1 SV=2 CANONICAL=A0A5G2QTY6-1" }, "locus": { "chromosome": "8", "start_pos": 55720418, "end_pos": 55704800, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087570.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087570.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064824.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064824.2" } ] } }, { "isoform_ac": "F1RTV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6/entry#F1RTV5-1", "sequence": { "sequence": "LSTLLNIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNTITSCVFQLLQEAGIKTAFTRKCGETAFIAPKCEMIPIEWVCRRIATGSFLKRNPGVKEGYKFYPPKVEMFFKDDANNDPQWSEEQLIAANFCFAGLVIGQTEVDVMSHATQAIFEILEKSWLPQNCTLVDMKVQIQWRFEKIVLADVIDNDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKTESQCRVVVLMGSTSDLSHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAFPVISCPPLSPDWGAQDVWSSLRLPSGLGCSTILSPEGSAQFAAQIFGLNNHLVWAKLRANVLNTWISLKQADKKIREGNL", "length": 421, "header": "tr|F1RTV5-1|A0A5G2QTY6_PIG Computationally mapped isoform of Bifunctional phosphoribosylaminoimidazole carboxylase/phosphoribosylaminoimidazole succinocarboxamide synthetase OS=Sus scrofa OX=9823 GN=PAICS PE=1 SV=3 CANONICAL=A0A5G2QTY6-1" }, "locus": { "chromosome": "8", "start_pos": 55720418, "end_pos": 55703884, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009745.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009745.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009493.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009493.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AI68", "url": "https://www.uniprot.org/uniprotkb/A0A287AI68" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-73817", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73817", "resource": "Reactome", "description": "Purine ribonucleoside monophosphate biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6" } ], "pmid": "" }, { "name": "phosphoribosylaminoimidazolesuccinocarboxamide synthase activity", "id": "GO:0004639", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004639", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6" } ], "pmid": "" }, { "name": "phosphoribosylaminoimidazole carboxylase activity", "id": "GO:0004638", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004638", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "GMP biosynthetic process", "id": "GO:0006177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006177", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6" } ], "pmid": "" }, { "name": "purine nucleobase biosynthetic process", "id": "GO:0009113", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009113", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6" } ], "pmid": "" }, { "name": "'de novo' IMP biosynthetic process", "id": "GO:0006189", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006189", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6" } ], "pmid": "" }, { "name": "'de novo' AMP biosynthetic process", "id": "GO:0044208", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044208", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6" } ], "pmid": "" }, { "name": "'de novo' XMP biosynthetic process", "id": "GO:0097294", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097294", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10792", "name": "", "equation": "5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + H(+) = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole + CO2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "10792", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10792" } ] }, { "id": "22628", "name": "", "equation": "5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + L-aspartate + ATP = (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate + ADP + phosphate + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "22628", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/22628" } ] }, { "id": "R-SSC-73805", "name": "CAIR + Aspartate + ATP => SAICAR + ADP + Pi", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-29448", "R-ALL-111395" ], "output_participant_list": [ "R-ALL-111399" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-73805", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73805" } ] }, { "id": "R-SSC-73806", "name": "AIR + CO2 => CAIR", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-111370" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-73806", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73806" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-111370", "participant_name": "AIR [cytosol]", "crossref": [ { "id": "137981", "database": "ChEBI", "url": "" }, { "id": "C03373", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-111395", "participant_name": "CAIR [cytosol]", "crossref": [ { "id": "77657", "database": "ChEBI", "url": "" }, { "id": "ZINC000004096533", "database": "ZINC", "url": "" }, { "id": "C04751", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-111399", "participant_name": "SAICAR [cytosol]", "crossref": [ { "id": "ZINC000004096553", "database": "ZINC", "url": "" }, { "id": "58443", "database": "ChEBI", "url": "" }, { "id": "C04823", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-29448", "participant_name": "L-Asp [cytosol]", "crossref": [ { "id": "29991", "database": "ChEBI", "url": "" }, { "id": "ZINC000000895032", "database": "ZINC", "url": "" }, { "id": "C00049", "database": "COMPOUND", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTY6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 424, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTY6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTY6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QTY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY6" }, { "id": "SM01001", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PurE", "eco_id": "ECO_0000259", "start_pos": 265, "end_pos": 412, "start_aa": "Cys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 185, "end_pos": 187 }, { "start_pos": 210, "end_pos": 212 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287B0W0-1", "uniprot_ac": "A0A287B0W0", "uniprot_id": "A0A287B0W0_PIG", "mass": { "chemical_mass": 24941.0, "monoisotopic_mass": 24941.0 }, "refseq": {}, "gene_names": [ { "name": "NDFIP1", "type": "recommended", "evidence": [ { "id": "A0A287B0W0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0" } ] } ], "protein_names": [ { "name": "Nedd4 family interacting protein 1", "type": "synonym", "evidence": [ { "id": "A0A287B0W0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287B0W0", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NDFIP1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0", "locus": { "chromosome": "2", "start_pos": 143734520, "end_pos": 143629783, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025295", "url": "https://www.ensembl.org/id/ENSSSCG00000025295" } ] } } ], "crossref": [ { "id": "A0A287B0W0", "url": "https://alphafold.ebi.ac.uk/entry/A0A287B0W0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025295", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025295", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22305", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22305", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR019325", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019325", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ASMVKWT", "url": "https://omabrowser.org/oma/group/ASMVKWT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13396", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13396", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13396:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13396:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10176", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10176", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AVF5", "url": "https://www.uniprot.org/uniprotkb/A0A287AVF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVF5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B069", "url": "https://www.uniprot.org/uniprotkb/A0A287B069", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B069-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B069-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0W0", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RM52", "url": "https://www.uniprot.org/uniprotkb/F1RM52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RM52-1", "url": "https://www.uniprot.org/uniprotkb/F1RM52-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALALAALAAVEPACGSRYQQLQNEEEPGEPEQAAGDAPPPYSSISAESAVYFDYKDESGFPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQMRIGNDGVFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY", "length": 221, "header": "tr|A0A287B0W0-1|A0A287B0W0_PIG Isoform 1 of Nedd4 family interacting protein 1 OS=Sus scrofa OX=9823 GN=NDFIP1 PE=4 SV=3 CANONICAL=A0A287B0W0-1" }, "isoforms": [ { "isoform_ac": "A0A287AVF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0/entry#A0A287AVF5-1", "sequence": { "sequence": "EAWGWHGFAHSQKHSYWSENIADWLIFRTKILQNEEEPGEPEQAAGDAPPPYSSISAESAVYFDYKDESGFPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQMRIGNDGVFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY", "length": 231, "header": "tr|A0A287AVF5-1|A0A287B0W0_PIG Computationally mapped isoform of Nedd4 family interacting protein 1 OS=Sus scrofa OX=9823 GN=NDFIP1 PE=4 SV=2 CANONICAL=A0A287B0W0-1" }, "locus": { "chromosome": "2", "start_pos": 143728296, "end_pos": 143629784, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050856.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050856.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048098.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048098.3" } ] } }, { "isoform_ac": "A0A287B069-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0/entry#A0A287B069-1", "sequence": { "sequence": "PRRRQRSSLPEESGRLGSSGGQRDPAEARPRRPPRAPSARSLALLPCGRRYQQLQNEEEPGEPEQAAGDAPPPYSSISAESAVYFDYKDESGFPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQMRIGNDGVFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY", "length": 253, "header": "tr|A0A287B069-1|A0A287B0W0_PIG Computationally mapped isoform of Nedd4 family interacting protein 1 OS=Sus scrofa OX=9823 GN=NDFIP1 PE=4 SV=3 CANONICAL=A0A287B0W0-1" }, "locus": { "chromosome": "2", "start_pos": 143728296, "end_pos": 143688968, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059424.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059424.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049800.3", "url": "https://www.ensembl.org/id/ENSSSCP00000049800.3" } ] } }, { "isoform_ac": "A0A287B0W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0/entry#A0A287B0W0-1", "sequence": { "sequence": "MALALAALAAVEPACGSRYQQLQNEEEPGEPEQAAGDAPPPYSSISAESAVYFDYKDESGFPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQMRIGNDGVFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY", "length": 221, "header": "tr|A0A287B0W0-1|A0A287B0W0_PIG Isoform 1 of Nedd4 family interacting protein 1 OS=Sus scrofa OX=9823 GN=NDFIP1 PE=4 SV=3 CANONICAL=A0A287B0W0-1" }, "locus": { "chromosome": "2", "start_pos": 143728296, "end_pos": 143689120, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050118.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050118.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049860.3", "url": "https://www.ensembl.org/id/ENSSSCP00000049860.3" } ] } }, { "isoform_ac": "F1RM52-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0/entry#F1RM52-1", "sequence": { "sequence": "AAQLTARGERPARQQRRPARPSRGASPSASPRPFRSLARPPSLRPLQNEEEPGEPEQAAGDAPPPYSSISAESAVYFDYKDESGFPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQMRIGNDGVFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY", "length": 245, "header": "tr|F1RM52-1|A0A287B0W0_PIG Computationally mapped isoform of Nedd4 family interacting protein 1 OS=Sus scrofa OX=9823 GN=NDFIP1 PE=4 SV=4 CANONICAL=A0A287B0W0-1" }, "locus": { "chromosome": "2", "start_pos": 143728296, "end_pos": 143688979, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015730.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015730.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015315.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015315.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B069", "url": "https://www.uniprot.org/uniprotkb/A0A287B069" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0ABI0P0F0-1", "protein_name": "Nedd4 family interacting protein 1", "gene_name": "NDFIP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALALAALAAVEPACGNRYQQLQNEEEPGEPEQAAGDAPPPYSSISAESAAYFDYKDESGFPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEEFAGREEFDDPDQMRIGNDGIFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPENFSNLPRTRVLFIY", "length": 221 }, "evidence": [ { "id": "A0A287B0W0", "url": "https://omabrowser.org/oma/group/A0A287B0W0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6DGP4-1", "protein_name": "NEDD4 family-interacting protein 1-like", "gene_name": "ndfip1l", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAEPSGRYQQLPCEEEPEAGPQVAADAPPPYSSIAADSAAFFDYKDDAAFPNPPSYNVATSLPSYDEAERTKTETSVPLVSGRDDDFVARDDFEDADQLRIGNDGIFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKIRKMADSFSTLPRTRVLFIY", "length": 210 }, "evidence": [ { "id": "A0A287B0W0", "url": "https://omabrowser.org/oma/group/A0A287B0W0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8R0W6-1", "protein_name": "NEDD4 family-interacting protein 1", "gene_name": "Ndfip1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALALAALAAVEPACGSGYQQLQNEEEPGEPEQTAGDAPPPYSSITAESAAYFDYKDESGFPKPPSYNVATTLPSYDEAERTKTEATIPLVPGRDEDFVGRDDFDDTDQLRIGNDGIFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY", "length": 221 }, "evidence": [ { "id": "A0A287B0W0", "url": "https://omabrowser.org/oma/group/A0A287B0W0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BT67-1", "protein_name": "NEDD4 family-interacting protein 1", "gene_name": "NDFIP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALALAALAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESGFPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY", "length": 221 }, "evidence": [ { "id": "A0A287B0W0", "url": "https://omabrowser.org/oma/group/A0A287B0W0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "vacuolar transport", "id": "GO:0007034", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007034", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0W0", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0" } ], "pmid": "" }, { "name": "intracellular iron ion homeostasis", "id": "GO:0006879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006879", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0W0", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0W0", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0" } ], "pmid": "" }, { "name": "positive regulation of protein ubiquitination", "id": "GO:0031398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031398", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0W0", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0" } ], "pmid": "" }, { "name": "metal ion transport", "id": "GO:0030001", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030001", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0W0", "url": "https://www.uniprot.org/uniprotkb/A0A287B0W0" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0W0", 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"header": "tr|A0A8D0V2X2-1|A0A5G2QPQ4_PIG Computationally mapped isoform of Non-SMC condensin I complex subunit G OS=Sus scrofa OX=9823 GN=NCAPG PE=3 SV=1 CANONICAL=A0A5G2QPQ4-1" }, "locus": { "chromosome": "8", "start_pos": 12807074, "end_pos": 12764210, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075230.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075230.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066204.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066204.1" } ] } }, { "isoform_ac": "F1S5C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPQ4/entry#F1S5C5-1", "sequence": { "sequence": 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"length": 1034, "header": "tr|F1S5C5-1|A0A5G2QPQ4_PIG Computationally mapped isoform of Non-SMC condensin I complex subunit G OS=Sus scrofa OX=9823 GN=NCAPG PE=3 SV=4 CANONICAL=A0A5G2QPQ4-1" }, "locus": { "chromosome": "8", "start_pos": 12807074, "end_pos": 12764210, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009570.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009570.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009323.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009323.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund 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"https://www.ensembl.org/id/ENSSSCT00000044227.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032126.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032126.1" } ] } }, { "isoform_ac": "A0A286ZZZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0V1/entry#A0A286ZZZ4-1", "sequence": { "sequence": "MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEYKFNRKALERPYTSKHSWGKTYGEHKRHLEFSHAQYRELQKFAEEVGIFFTASGMDEMAVEFLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFCFLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHITLDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEMACNEKVGSDPARCFCWEGLQWACLRGGL", "length": 313, "header": "tr|A0A286ZZZ4-1|A0A287B0V1_PIG Computationally mapped isoform of N-acetylneuraminate-9-phosphate synthase OS=Sus scrofa OX=9823 GN=NANS PE=1 SV=1 CANONICAL=A0A287B0V1-1" }, "locus": { "chromosome": "1", "start_pos": 239910414, "end_pos": 239881984, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045745.3", 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"ENSSSCT00000055524.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055524.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050044.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050044.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZL00", "url": "https://www.uniprot.org/uniprotkb/A0A286ZL00" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-4085001", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4085001", "resource": "Reactome", "description": "Sialic acid metabolism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "carbohydrate biosynthetic process", "id": "GO:0016051", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016051", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0V1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0V1" } ], "pmid": "" }, { "name": "N-acetylneuraminate metabolic process", "id": "GO:0006054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006054", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0V1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0V1" } ], "pmid": "" }, { "name": "carbohydrate derivative biosynthetic process", "id": "GO:1901137", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901137", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0V1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0V1" } ], "pmid": "" }, { "name": "CMP-N-acetylneuraminate biosynthetic process", "id": "GO:0006055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006055", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0V1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0V1" } ], "pmid": "" }, { "name": "N-acetylneuraminate biosynthetic process", "id": "GO:0046380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046380", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0V1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0V1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "N-acylneuraminate-9-phosphate synthase activity", "id": "GO:0047444", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047444", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0V1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0V1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0V1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0V1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0V1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0V1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "80835", "name": "", "equation": "aldehydo-N-acetyl-D-mannosamine 6-phosphate + phosphoenolpyruvate + H2O = N-acetylneuraminate 9-phosphate + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "80835", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/80835" } ] }, { "id": "R-SSC-4084976", "name": "NANS converts ManNAc-6-P to Neu5Ac-9-P", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-4085225" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-4084976", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4084976" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-4085225", "participant_name": "ManNAc-6-P [cytosol]", "crossref": [ { "id": "58557", "database": "ChEBI", "url": "" }, { "id": "ZINC000034997269", "database": "ZINC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287B0V1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 335, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287B0V1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287B0V1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287B0V1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B0V1" }, { "id": "PS50844", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50844" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AFP-like", "eco_id": "ECO_0000259", "start_pos": 270, "end_pos": 329, "start_aa": "Ser", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A5G2QUT3-1", "uniprot_ac": "A0A5G2QUT3", "uniprot_id": "A0A5G2QUT3_PIG", "mass": { "chemical_mass": 13362.0, "monoisotopic_mass": 13362.0 }, "refseq": {}, "gene_names": [ { "name": "EIF4EBP2", "type": "recommended", "evidence": [ { "id": "A0A5G2QUT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT3" } ] } ], "protein_names": [ { "name": "Eukaryotic translation initiation factor 4E binding protein 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QUT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUT3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EIF4EBP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT3", "locus": { "chromosome": "14", "start_pos": 73349291, "end_pos": 73323642, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000034444", "url": "https://www.ensembl.org/id/ENSSSCG00000034444" } ] } } ], "crossref": [ { "id": "A0A5G2QUT3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUT3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000034444", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034444", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523927", "url": "https://www.ncbi.nlm.nih.gov/gene/100523927", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008606", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008606", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523927", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523927", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PMMTRKI", "url": "https://omabrowser.org/oma/group/PMMTRKI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZLA1", "url": "https://www.orthodb.org/?gene=A0A286ZLA1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12669", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12669", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12669:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12669:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZLA1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLA1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUT3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSSAGSGHQPSQSRAIPTRTVPISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRKFLLDRRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGKRILWVKDLVLP", "length": 123, "header": "tr|A0A5G2QUT3-1|A0A5G2QUT3_PIG Isoform 1 of Eukaryotic translation initiation factor 4E binding protein 2 OS=Sus scrofa OX=9823 GN=EIF4EBP2 PE=3 SV=1 CANONICAL=A0A5G2QUT3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT3/entry#A0A286ZLA1-1", "sequence": { "sequence": "MSSSAGSGHQPSQSRAIPTRTVPISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRKFLLDRRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGDDAQFEMDI", "length": 120, "header": "tr|A0A286ZLA1-1|A0A5G2QUT3_PIG Computationally mapped isoform of Eukaryotic translation initiation factor 4E binding protein 2 OS=Sus scrofa OX=9823 GN=EIF4EBP2 PE=3 SV=1 CANONICAL=A0A5G2QUT3-1" }, "locus": { "chromosome": "14", "start_pos": 73342848, "end_pos": 73323925, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059458.2", "url": "https://www.ensembl.org/id/ENSSSCT00000059458.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032221.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032221.1" } ] } }, { "isoform_ac": "A0A5G2QUT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT3/entry#A0A5G2QUT3-1", "sequence": { "sequence": "MSSSAGSGHQPSQSRAIPTRTVPISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRKFLLDRRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGKRILWVKDLVLP", "length": 123, "header": "tr|A0A5G2QUT3-1|A0A5G2QUT3_PIG Isoform 1 of Eukaryotic translation initiation factor 4E binding protein 2 OS=Sus scrofa OX=9823 GN=EIF4EBP2 PE=3 SV=1 CANONICAL=A0A5G2QUT3-1" }, "locus": { "chromosome": "14", "start_pos": 73341745, "end_pos": 73323925, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072871.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072871.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068721.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068721.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZLA1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLA1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523927", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523927", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A0I3-1", "protein_name": "Eukaryotic translation initiation factor 4E binding protein 2", "gene_name": "Eif4ebp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSASAGGGHQPSQSRAIPTRTVAISDAAQLPQDYCTTPGGTLFSTTPGGTRIIYDRKFLLDRRNSPMAQTPPCHLPNIPGVTSPGALMEDSKVEVNNLNNLNNHDRKHAVGLCEAARAPDVD", "length": 122 }, "evidence": [ { "id": "A0A5G2QUT3", "url": "https://omabrowser.org/oma/group/A0A5G2QUT3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70445-1", "protein_name": "Eukaryotic translation initiation factor 4E-binding protein 2", "gene_name": "Eif4ebp2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSASAGGSHQPSQSRAIPTRTVAISDAAQLPQDYCTTPGGTLFSTTPGGTRIIYDRKFLLDRRNSPMAQTPPCHLPNIPGVTSPGALIEDSKVEVNNLNNLNNHDRKHAVGDEAQFEMDI", "length": 120 }, "evidence": [ { "id": "A0A5G2QUT3", "url": "https://omabrowser.org/oma/group/A0A5G2QUT3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q13542-1", "protein_name": "Eukaryotic translation initiation factor 4E-binding protein 2", "gene_name": "EIF4EBP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSSAGSGHQPSQSRAIPTRTVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRKFLLDRRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGDDAQFEMDI", "length": 120 }, "evidence": [ { "id": "A0A5G2QUT3", "url": "https://omabrowser.org/oma/group/A0A5G2QUT3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9XZ56-1", "protein_name": "Eukaryotic translation initiation factor 4E-binding protein", "gene_name": "Thor", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSASPTARQAITQALPMITRKVVISDPIQMPEVYSSTPGGTLYSTTPGGTKLIYERAFMKNLRGSPLSQTPPSNVPSCLLRGTPRTPFRKCVPVPTELIKQTKSLKIEDQEQFQLDL", "length": 117 }, "evidence": [ { "id": "A0A5G2QUT3", "url": "https://omabrowser.org/oma/group/A0A5G2QUT3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "eukaryotic initiation factor 4E binding", "id": "GO:0008190", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008190", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUT3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT3" } ], "pmid": "" }, { "name": "translation repressor activity", "id": "GO:0030371", "url": 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}, { "name": "social behavior", "id": "GO:0035176", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035176", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUT3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "neuronal ribonucleoprotein granule", "id": "GO:0071598", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071598", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUT3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUT3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 123, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUT3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUT3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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{ "name": "ZNF484", "type": "recommended", "evidence": [ { "id": "A0A287B152", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B152" } ] }, { "name": "ZNF484", "type": "synonym", "evidence": [ { "id": "XP_020942638", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942638" } ] } ], "protein_names": [ { "name": "Zinc finger protein 484", "type": "synonym", "evidence": [ { "id": "A0A287B152", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B152/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 484 isoform X7", "type": "synonym", "evidence": [ { "id": "XP_020942638", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942638" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQB4", "url": "https://www.uniprot.org/uniprotkb/A0A287AQB4#function" }, { "database": "UniProtKB", "id": 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"https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624662", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624662", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AQB4", "url": "https://www.orthodb.org/?gene=A0A287AQB4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384:SF242", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384:SF242", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47772", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47772", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47772:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47772:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47772:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47772:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020942638", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942638", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZRZ9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZRZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A7B8", "url": "https://www.uniprot.org/uniprotkb/A0A287A7B8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A7B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7B8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQB4", "url": "https://www.uniprot.org/uniprotkb/A0A287AQB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B152", "url": "https://www.uniprot.org/uniprotkb/A0A287B152", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B152-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B152-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCV8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAGSVSFKDVIVDFSREEWQQLDRVQKSLYRNVMLENYFNLISVGCQVPKPEVIFNLEWGEEPCMLGGEVSSLSCVDQVIGFETLQQGKSEEDLIRFERINLFTRDDPYSILGELWQDDKQTGRCEENLNRHLNHVTFINENTLANEKDYEYNKDIGKIFHVNTYLVSSRKRLYDSLQKSLKPILSLCNYNRNNATENFDKVIGYDNIFTHVKSHTETHASEYNRRKKLLSHKQALSQHQKIHTGGNLCLFSDCGKLFTHKSHLFAHQRIYTEEKHEWSKCETVFTEKLQLAVPPKVYREEKNSVCTEYGKDFSLNSNHEKTHTEGTGYKCSAHEKAFLQKSDLFRHQRIHIGGKKPYDYNECETNVSQNSNLSVHKKVHIGEKHFECTECGKAFTRKSTLSMHQKIHTGEKPYVCTECGKAFIRKSHFITHERIHTGEKPYACSDCGKSFIKKSQLHVHRRIHTGENPFICTECGKVFAHKTNLIIHEKIHTGERPYICTECGKAFTDRSNLIKHQKIHTGEKPYKCNDCGKSFTWKSRLRIHQKCHTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPYVCTECGKAFFHKSHFITHERIHTGEKPYECSDCGKSFTKKSQLHVHQQIHTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHYECSECGKAFARKSTLIMHQRIHTGEKPYICTECGKSFIQKSHLNRHQRIHTGEKPYECGDCGRAFIKKSQLHEHHRIHTGEKPYMCTECGKAFTIRSNLIKHQKIHTKQKPYKCSDFRKAFNWKPQLSIHQKSNTGEVDCPIPQSWHGDTKL", "length": 847, "header": "tr|A0A287B152-1|A0A287B152_PIG Isoform 1 of Zinc finger protein 484 OS=Sus scrofa OX=9823 GN=ZNF484 PE=3 SV=1 CANONICAL=A0A287B152-1" }, "isoforms": [ { "isoform_ac": "A0A286ZRZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B152/entry#A0A286ZRZ9-1", "sequence": { "sequence": "MTRSLGSVSFKDVIVDFSREEWQQLDRVQKSLYRNVMLENYFNLISVGCQVPKPEVIFNLEWGEEPCMLGGEVSSLSCVDQVIGFETLQQGKSEEDLIRFERINLFTRDDPYSILGELWQDDKQTGRCEENLNRHLNHVTFINENTLANEKDYEYNKDIGKIFHVNTYLVSSRKRLYDSLQKSLKPILSLCNYNRNNATENFDKVIGYDNIFTHVKSHTETHASEYNRRKKLLSHKQALSQHQKIHTGGNLCLFSDCGKLFTHKSHLFAHQRIYTEEKHEWSKCETVFTEKLQLAVPPKVYREEKNSVCTEYGKDFSLNSNHEKTHTEGTGYKCSAHEKAFLQKSDLFRHQRIHIGGKKPYDYNECETNVSQNSNLSVHKKVHIGEKHFECTECGKAFTRKSTLSMHQKIHTGEKPYVCTECGKAFIRKSHFITHERIHTGEKPYACSDCGKSFIKKSQLHVHRRIHTGENPFICTECGKVFAHKTNLIIHEKIHTGERPYICTECGKAFTDRSNLIKHQKIHTGEKPYKCNDCGKSFTWKSRLRIHQKCHTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPYVCTECGKAFFHKSHFITHERIHTGEKPYECSDCGKSFTKKSQLHVHQQIHTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHYECSECGKAFARKSTLIMHQRIHTGEKPYICTECGKSFIQKSHLNRHQRIHTGEKPYECGDCGRAFIKKSQLHEHHRIHTGEKPYMCTECGKAFTIRSNLIKHQKIHTKQKPYKCSDFRKAFNWKPQLSIHQKSNTGEVDCPIPQSWHGDTKL", "length": 849, "header": "tr|A0A286ZRZ9-1|A0A287B152_PIG Computationally mapped isoform of Zinc finger protein 484 OS=Sus scrofa OX=9823 GN=ZNF484 PE=3 SV=2 CANONICAL=A0A287B152-1" }, "locus": { "chromosome": "3", "start_pos": 41908023, "end_pos": 41896829, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064943.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064943.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034347.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034347.2" } ] } }, { "isoform_ac": "A0A287A7B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B152/entry#A0A287A7B8-1", "sequence": { "sequence": "MTSLYLMFPQISVPFPEEPEMTRSLGSVSFKDVIVDFSREEWQQLDRVQKSLYRNVMLENYFNLISVGCQVPKPEVIFNLEWGEEPCMLGGEVSSLSCVDQVIGFETLQQGKSEEDLIRFERINLFTRDDPYSILGELWQDDKQTGRCEENLNRHLNHVTFINENTLANEKDYEYNKDIGKIFHVNTYLVSSRKRLYDSLQKSLKPILSLCNYNRNNATENFDKVIGYDNIFTHVKSHTETHASEYNRRKKLLSHKQALSQHQKIHTGGNLCLFSDCGKLFTHKSHLFAHQRIYTEEKHEWSKCETVFTEKLQLAVPPKVYREEKNSVCTEYGKDFSLNSNHEKTHTEGTGYKCSAHEKAFLQKSDLFRHQRIHIGGKKPYDYNECETNVSQNSNLSVHKKVHIGEKHFECTECGKAFTRKSTLSMHQKIHTGEKPYVCTECGKAFIRKSHFITHERIHTGEKPYACSDCGKSFIKKSQLHVHRRIHTGENPFICTECGKVFAHKTNLIIHEKIHTGERPYICTECGKAFTDRSNLIKHQKIHTGEKPYKCNDCGKSFTWKSRLRIHQKCHTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPYVCTECGKAFFHKSHFITHERIHTGEKPYECSDCGKSFTKKSQLHVHQQIHTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHYECSECGKAFARKSTLIMHQRIHTGEKPYICTECGKSFIQKSHLNRHQRIHTGEKPYECGDCGRAFIKKSQLHEHHRIHTGEKPYMCTECGKAFTIRSNLIKHQKIHTKQKPYKCSDFRKAFNWKPQLSIHQKSNTGEVDCPIPQSWHGDTKL", "length": 869, "header": "tr|A0A287A7B8-1|A0A287B152_PIG Computationally mapped isoform of Zinc finger protein 484 OS=Sus scrofa OX=9823 GN=ZNF484 PE=3 SV=1 CANONICAL=A0A287B152-1" }, "locus": { "chromosome": "3", "start_pos": 41917890, "end_pos": 41896829, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040763.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040763.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039709.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039709.1" } ] } }, { "isoform_ac": "A0A287AQB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B152/entry#A0A287AQB4-1", "sequence": { "sequence": "MRTPGRRLKNIARTGRDPEGGMFPQISVPFPEEPEMTRSLGSVSFKDVIVDFSREEWQQLDRVQKSLYRNVMLENYFNLISVGCQVPKPEVIFNLEWGEEPCMLGGEVSSLSCVDQVIGFETLQQGKSEEDLIRFERINLFTRDDPYSILGELWQDDKQTGRCEENLNRHLNHVTFINENTLANEKDYEYNKDIGKIFHVNTYLVSSRKRLYDSLQKSLKPILSLCNYNRNNATENFDKVIGYDNIFTHVKSHTETHASEYNRRKKLLSHKQALSQHQKIHTGGNLCLFSDCGKLFTHKSHLFAHQRIYTEEKHEWSKCETVFTEKLQLAVPPKVYREEKNSVCTEYGKDFSLNSNHEKTHTEGTGYKCSAHEKAFLQKSDLFRHQRIHIGGKKPYDYNECETNVSQNSNLSVHKKVHIGEKHFECTECGKAFTRKSTLSMHQKIHTGEKPYVCTECGKAFIRKSHFITHERIHTGEKPYACSDCGKSFIKKSQLHVHRRIHTGENPFICTECGKVFAHKTNLIIHEKIHTGERPYICTECGKAFTDRSNLIKHQKIHTGEKPYKCNDCGKSFTWKSRLRIHQKCHTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPYVCTECGKAFFHKSHFITHERIHTGEKPYECSDCGKSFTKKSQLHVHQQIHTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHYECSECGKAFARKSTLIMHQRIHTGEKPYICTECGKSFIQKSHLNRHQRIHTGEKPYECGDCGRAFIKKSQLHEHHRIHTGEKPYMCTECGKAFTIRSNLIKHQKIHTKQKPYKCSDFRKAFNWKPQLSIHQKSNTGEVDCPIPQSWHGDTKL", "length": 884, "header": "tr|A0A287AQB4-1|A0A287B152_PIG Computationally mapped isoform of Zinc finger protein 484 OS=Sus scrofa OX=9823 GN=ZNF484 PE=3 SV=3 CANONICAL=A0A287B152-1" }, "locus": { "chromosome": "3", "start_pos": 41918681, "end_pos": 41896829, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064676.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064676.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046254.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046254.3" } ] } }, { "isoform_ac": "A0A287B152-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B152/entry#A0A287B152-1", "sequence": { "sequence": "MEAGSVSFKDVIVDFSREEWQQLDRVQKSLYRNVMLENYFNLISVGCQVPKPEVIFNLEWGEEPCMLGGEVSSLSCVDQVIGFETLQQGKSEEDLIRFERINLFTRDDPYSILGELWQDDKQTGRCEENLNRHLNHVTFINENTLANEKDYEYNKDIGKIFHVNTYLVSSRKRLYDSLQKSLKPILSLCNYNRNNATENFDKVIGYDNIFTHVKSHTETHASEYNRRKKLLSHKQALSQHQKIHTGGNLCLFSDCGKLFTHKSHLFAHQRIYTEEKHEWSKCETVFTEKLQLAVPPKVYREEKNSVCTEYGKDFSLNSNHEKTHTEGTGYKCSAHEKAFLQKSDLFRHQRIHIGGKKPYDYNECETNVSQNSNLSVHKKVHIGEKHFECTECGKAFTRKSTLSMHQKIHTGEKPYVCTECGKAFIRKSHFITHERIHTGEKPYACSDCGKSFIKKSQLHVHRRIHTGENPFICTECGKVFAHKTNLIIHEKIHTGERPYICTECGKAFTDRSNLIKHQKIHTGEKPYKCNDCGKSFTWKSRLRIHQKCHTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPYVCTECGKAFFHKSHFITHERIHTGEKPYECSDCGKSFTKKSQLHVHQQIHTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHYECSECGKAFARKSTLIMHQRIHTGEKPYICTECGKSFIQKSHLNRHQRIHTGEKPYECGDCGRAFIKKSQLHEHHRIHTGEKPYMCTECGKAFTIRSNLIKHQKIHTKQKPYKCSDFRKAFNWKPQLSIHQKSNTGEVDCPIPQSWHGDTKL", "length": 847, "header": "tr|A0A287B152-1|A0A287B152_PIG Isoform 1 of Zinc finger protein 484 OS=Sus scrofa OX=9823 GN=ZNF484 PE=3 SV=1 CANONICAL=A0A287B152-1" }, "locus": { "chromosome": "3", "start_pos": 41918463, "end_pos": 41896829, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056372.2", "url": "https://www.ensembl.org/id/ENSSSCT00000056372.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049889.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049889.1" } ] } }, { "isoform_ac": "A0A5G2QCV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B152/entry#A0A5G2QCV8-1", "sequence": { "sequence": "MTSLYLMFPQISVPFPEEPEMTRSLGSVSFKDVIVDFSREEWQQLDRVQKSLYRNVMLENYFNLISVGCQVPKPEVIFNLEWGEEPCMLGGEVSSLSCVDQVIGFETLQQGKSEEDLIRFERINLFTRDDPYSILGELWQDDKQTGRCEENLNRHLNHVTFINENTLANEKDYEYNKDIGKIFHVNTYLVSSRKRLYDSLQKSLKPILSLCNYNRNNATENFDKVIGYDNIFTHVKSHTETHASEYNRRKKLLSHKQALSQHQKIHTGGNLCLFSDCGKLFTHKSHLFAHQRIYTEEKHEWSKCETVFTEKLQLAVPPKVYREEKNSVCTEYGKDFSLNSNHEKTHTEGTGYKCSAHEKAFLQKSDLFRHQRIHIGGKKPYDYNECETNVSQNSNLSVHKKVHIGEKHFECTECGKAFTRKSTLSMHQKIHTGEKPYVCTECGKAFIRKSHFITHERIHTGEKPYACSDCGKSFIKKSQLHVHRRIHTGENPFICTECGKVFAHKTNLIIHEKIHTGERPYICTECGKAFTDRSNLIKHQKIHTGEKPYKCNDCGKSFTWKSRLRIHQKCHTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPYVCTECGKAFFHKSHFITHERIHTGEKPYECSDCGKSFTKKSQLHVHQQIHTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHYECSECGKAFARKSTLIMHQRIHTGEKPYICTECGKSFIQKSHLNRHQRIHTGEKPYECGDCGRAFIKKSQLHEHHRIHTGEKPYMCTECGKAFTIRSNLIKHQKIHTKQKPYKCSDFRKAFNWKPQLSIHQKSNTGEVDCPIPQSWHGDTKGNQSQLFSM", "length": 877, "header": "tr|A0A5G2QCV8-1|A0A287B152_PIG Computationally mapped isoform of Zinc finger protein 484 OS=Sus scrofa OX=9823 GN=ZNF484 PE=3 SV=2 CANONICAL=A0A287B152-1" }, "locus": { "chromosome": "3", "start_pos": 41917890, "end_pos": 41896771, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089529.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089529.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062431.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062431.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCV8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624662", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624662", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287B152", "url": "https://www.uniprot.org/uniprotkb/A0A287B152" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287B152", "url": "https://www.uniprot.org/uniprotkb/A0A287B152" } ], "pmid": "" }, { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "A0A287B152", "url": "https://www.uniprot.org/uniprotkb/A0A287B152" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287B152", "url": "https://www.uniprot.org/uniprotkb/A0A287B152" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287B152", "url": "https://www.uniprot.org/uniprotkb/A0A287B152" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A287B152", "url": "https://www.uniprot.org/uniprotkb/A0A287B152" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A287B152", "url": "https://www.uniprot.org/uniprotkb/A0A287B152" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 367, "end_pos": 369, "annotation": "n_glycosylation_sequon" }, { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287B152-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 847, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287B152-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287B152" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287B152", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B152" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 248, "end_pos": 277, "start_aa": "Asn", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287B152", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287B152" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 77, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 195, "end_pos": 197 }, { "start_pos": 367, "end_pos": 369 }, { "start_pos": 373, "end_pos": 375 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A5G2QSL5-1", "uniprot_ac": "A0A5G2QSL5", "uniprot_id": 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"MLEKGAMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA", "length": 163, "header": "tr|A0A5G2QSL5-1|A0A5G2QSL5_PIG Isoform 1 of AP complex subunit sigma OS=Sus scrofa OX=9823 GN=AP1S1 PE=1 SV=1 CANONICAL=A0A5G2QSL5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSL5/entry#A0A5G2QSL5-1", "sequence": { "sequence": "MLEKGAMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA", "length": 163, "header": "tr|A0A5G2QSL5-1|A0A5G2QSL5_PIG Isoform 1 of AP complex subunit sigma OS=Sus scrofa OX=9823 GN=AP1S1 PE=1 SV=1 CANONICAL=A0A5G2QSL5-1" }, "locus": { "chromosome": "3", "start_pos": 8886864, "end_pos": 8882776, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075871.1", "url": 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} ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LVB8", "url": "https://www.uniprot.org/uniprotkb/I3LVB8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": 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"https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052446", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052446", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16267", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16267", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16267:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16267:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14545", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14545", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18567", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18567", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QSU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV85-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3I1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3I1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3I1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3I1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LV96", "url": "https://www.uniprot.org/uniprotkb/I3LV96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LV96-1", "url": "https://www.uniprot.org/uniprotkb/I3LV96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPAVPGRAGGSRVARSGSAPPENTKDILMIYEEDAEEWALYLREVFLNAVKREAILLYCLENYCLWDLELLDLNSYKCKLLILSNSLLKNLTPKKCQFLESVLHLPESVVTLLCGVKSSDQFYKSLNISRGRWELSTEQEAEDYISVIKSIIFKDYEDYLEIITPEDIRVKHSGEISEKKEMEESSEASRSTIPQAVVLPAEIPCENPGEIFVILRDEVIGDTVEVEFTSSSKCIRTRPALWNKTVWWMKALDFPAGSVNVHVFCDGVIKATAEIKYYTAAKAMESLLGAAGPGDGVCQNDIDGLDDILTSTFKHEIPHYEFRPFQTEIHPQKEYTYFKELPTLLHCAAKFGLKNLAIHLLQCSGANWASKIKNLEGSDPAHIAERHGHEELKKIFEEFSIQDAGGDDEQESDYEEDFISFCTHSPSIQNPALHQESQQTYRQRAEGAEVKEMAEEEIEQDSGSEAQPTPEEVDSESEDQYDDLYVFIPGDNPEDNSQEALMSRPPLPPPRPAATAFQLEKPHFTLQGKILSGQMERSQSWCDSSARFEAGGEPKGEEEKENEKDQEEEEDPYTFAEIDDSEYDMILANTSIKKKTESRSFIMNRPPAPTPRPTNIPPKEETTPYIAQVFQQKTARGQSDGDKFHGPKKQDRARMESQAFSTVRNCLAAGQEELILLQEKVKNGKLSMDEALEKFKQWQMGKTGLETIQQEKLRQLRDCIIGKRPEEENVYNKLTIVHHPNGNESAHNENTLHNIPFGNKLPARFQAEKEFGFCYRKDH", "length": 780, "header": "tr|A0A5G2QSU2-1|A0A5G2QSU2_PIG Isoform 1 of B-cell scaffold protein with ankyrin repeats OS=Sus scrofa OX=9823 GN=BANK1 PE=4 SV=1 CANONICAL=A0A5G2QSU2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2/entry#A0A5G2QSU2-1", "sequence": { "sequence": "MLPAVPGRAGGSRVARSGSAPPENTKDILMIYEEDAEEWALYLREVFLNAVKREAILLYCLENYCLWDLELLDLNSYKCKLLILSNSLLKNLTPKKCQFLESVLHLPESVVTLLCGVKSSDQFYKSLNISRGRWELSTEQEAEDYISVIKSIIFKDYEDYLEIITPEDIRVKHSGEISEKKEMEESSEASRSTIPQAVVLPAEIPCENPGEIFVILRDEVIGDTVEVEFTSSSKCIRTRPALWNKTVWWMKALDFPAGSVNVHVFCDGVIKATAEIKYYTAAKAMESLLGAAGPGDGVCQNDIDGLDDILTSTFKHEIPHYEFRPFQTEIHPQKEYTYFKELPTLLHCAAKFGLKNLAIHLLQCSGANWASKIKNLEGSDPAHIAERHGHEELKKIFEEFSIQDAGGDDEQESDYEEDFISFCTHSPSIQNPALHQESQQTYRQRAEGAEVKEMAEEEIEQDSGSEAQPTPEEVDSESEDQYDDLYVFIPGDNPEDNSQEALMSRPPLPPPRPAATAFQLEKPHFTLQGKILSGQMERSQSWCDSSARFEAGGEPKGEEEKENEKDQEEEEDPYTFAEIDDSEYDMILANTSIKKKTESRSFIMNRPPAPTPRPTNIPPKEETTPYIAQVFQQKTARGQSDGDKFHGPKKQDRARMESQAFSTVRNCLAAGQEELILLQEKVKNGKLSMDEALEKFKQWQMGKTGLETIQQEKLRQLRDCIIGKRPEEENVYNKLTIVHHPNGNESAHNENTLHNIPFGNKLPARFQAEKEFGFCYRKDH", "length": 780, "header": "tr|A0A5G2QSU2-1|A0A5G2QSU2_PIG Isoform 1 of B-cell scaffold protein with ankyrin repeats OS=Sus scrofa OX=9823 GN=BANK1 PE=4 SV=1 CANONICAL=A0A5G2QSU2-1" }, "locus": { "chromosome": "8", "start_pos": 119114762, "end_pos": 118816206, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090381.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090381.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067206.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067206.1" } ] } }, { "isoform_ac": "A0A5G2QV85-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2/entry#A0A5G2QV85-1", "sequence": { "sequence": "MKAGVCFWDPYFFLEGSASWKPLNGTRMATGTENTKDILMIYEEDAEEWALYLREVFLNAVKREAILLYCLENYCLWDLELLDLNSYKCKLLILSNSLLKNLTPKKCQFLESVLHLPESVVTLLCGVKSSDQFYKSLNISRGRWELSTEQEAEDYISVIKSIIFKDYEDYLEIITPEDIRVKHSGEISEKKEMEESSEASRSTIPQAVVLPAEIPCENPGEIFVILRDEVIGDTVEVEFTSSSKCIRTRPALWNKTVWWMKALDFPAGSVNVHVFCDGVIKATAEIKYYTAAKAMESLLGAAGPGDGVCQNDIDGLDDILTSTFKHEIPHYEFRPFQTEIHPQKEYTYFKELPTLLHCAAKFGLKNLAIHLLQCSGANWASKIKNLEGSDPAHIAERHGHEELKKIFEEFSIQDAGGDDEQESDYEEDFISFCTHSPSIQNPALHQESQQTYRQRAEGAEVKEMAEEEIEQDSGSEAQPTPEEVDSESEDQYDDLYVFIPGDNPEDNSQEALMSRPPLPPPRPAATAFQLEKPHFTLQGKILSGQMERSQSWCDSSARFEAGGEPKGEEEKENEKDQEEEEDPYTFAEIDDSEYDMILANTSIKKKTESRSFIMNRPPAPTPRPTNIPPKEETTPYIAQVFQQKTARGQSDGDKFHGPKKQDRARMESQAFSTVRNCLAAGQEELILLQEKVKNGKLSMDEALEKFKQWQMGKTGLETIQQEKLRQLRDCIIGKRPEEENVYNKLTIVHHPNGNESAHNENTLHNIPFGNKLPARFQAEKEFGFCYRKDH", "length": 790, "header": "tr|A0A5G2QV85-1|A0A5G2QSU2_PIG Computationally mapped isoform of B-cell scaffold protein with ankyrin repeats OS=Sus scrofa OX=9823 GN=BANK1 PE=4 SV=2 CANONICAL=A0A5G2QSU2-1" }, "locus": { "chromosome": "8", "start_pos": 119157342, "end_pos": 118816206, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080224.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080224.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065868.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065868.2" } ] } }, { "isoform_ac": "A0A5G2R3I1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2/entry#A0A5G2R3I1-1", "sequence": { "sequence": "MKAGVCFWDPYFFLEGSASWKPLNGTRMATGTENTKDILMIYEEDAEEWALYLREVFLNAVKREAILLYCLENYCLWDLELLDLNSYKCKLLILSNSLLKNLTPKKCQFLESVLHLPESVVTLLCGVKSSDQFYKSLNISRGRWELSTEQEAEDYISVIKSIIFKDYEDYLEIITPEDIRVKHSGEISEKKEMEESSEASRSTIPQAVVLPAEIPCENPGEIFVILRDEVIGDTVEVEFTSSSKCIRTRPALWNKTVWWMKALDFPAGSVNVHVFCDGVIKATAEIKYYTAAKAMESLLGAAGPGDGVCQNDIDGLDDILTSTFKHEIPHYEFRPFQTEIHPQKEYTYFKELPTLLHCAAKFGLKNLAIHLLQCSGANWASKIKNLEGSDPAHIAERHGHEELKKIFEEFSIQDAGGDDEQESDYEEDFISFCTHSPSIQNPALHQESQQTYRQREEIEQDSGSEAQPTPEEVDSESEDQYDDLYVFIPGDNPEDNSQEALMSRPPLPPPRPAATAFQLEKPHFTLQGKILSGQMERSQSWCDSSARFEAGGEPKGEEEKENEKDQEEEEDPYTFAEIDDSEYDMILANTSIKKKTESRSFIMNRPPAPTPRPTNIPPKEETTPYIAQVFQQKTARGQSDGDKFHGPKKQDRARMESQAFSTVRNCLAAGQEELILLQEKVKNGKLSMDEALEKFKQWQMGKTGLETIQQEKLRQLRDCIIGKRPEEENVYNKLTIVHHPNGNESAHNENTLHNIPFGNKVAIFFQEQDFG", "length": 771, "header": "tr|A0A5G2R3I1-1|A0A5G2QSU2_PIG Computationally mapped isoform of B-cell scaffold protein with ankyrin repeats OS=Sus scrofa OX=9823 GN=BANK1 PE=4 SV=2 CANONICAL=A0A5G2QSU2-1" }, "locus": { "chromosome": "8", "start_pos": 119157342, "end_pos": 118816537, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085752.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085752.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070902.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070902.2" } ] } }, { "isoform_ac": "I3LV96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2/entry#I3LV96-1", "sequence": { "sequence": "MLPAVPGRAGGSRVARSGSAPPDYEDYLEIITPEDIRVKHSGEISEKKEMEESSEASRSTIPQAVVLPAEIPCENPGEIFVILRDEVIGDTVEVEFTSSSKCIRTRPALWNKTVWWMKALDFPAGSVNVHVFCDGVIKATAEIKYYTAAKAMESLLGAAGPGDGVCQNDIDGLDDILTSTFKHEIPHYEFRPFQTEIHPQKEYTYFKELPTLLHCAAKFGLKNLAIHLLQCSGANWASKIKNLEGSDPAHIAERHGHEELKKIFEEFSIQDAGGDDEQESDYEEDFISFCTHSPSIQNPALHQESQQTYRQRAEGAEVKEMAEEEIEQDSGSEAQPTPEEVDSESEDQYDDLYVFIPGDNPEDNSQEALMSRPPLPPPRPAATAFQLEKPHFTLQGKILSGQMERSQSWCDSSARFEAGGEPKGEEEKENEKDQEEEEDPYTFAEIDDSEYDMILANTSIKKKTESRSFIMNRPPAPTPRPTNIPPKEETTPYIAQVFQQKTARGQSDGDKFHGPKKQDRARMESQAFSTVRNCLAAGQEELILLQEKVKNGKLSMDEALEKFKQWQMGKTGLETIQQEKLRQLRDCIIGKRPEEENVYNKLTIVHHPNGNESAHNENTLHNIPFGNKLPARFQAEKEFGFCYRKDH", "length": 647, "header": "tr|I3LV96-1|A0A5G2QSU2_PIG Computationally mapped isoform of B-cell scaffold protein with ankyrin repeats OS=Sus scrofa OX=9823 GN=BANK1 PE=4 SV=3 CANONICAL=A0A5G2QSU2-1" }, "locus": { "chromosome": "8", "start_pos": 119114762, "end_pos": 118816206, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025850.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025850.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028048.3", "url": "https://www.ensembl.org/id/ENSSSCP00000028048.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 611, "start_aa": "Thr", "end_pos": 611, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr611", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R3I1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3I1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "protease binding", "id": "GO:0002020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" } ], "pmid": "" }, { "name": "signaling receptor binding", "id": "GO:0005102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005102", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" } ], "pmid": "" }, { "name": "signaling adaptor activity", "id": "GO:0035591", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035591", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" } ], "pmid": "" }, { "name": "phospholipase binding", "id": "GO:0043274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043274", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" } ], "pmid": "" }, { "name": "protein tyrosine kinase binding", "id": "GO:1990782", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990782", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" } ], "pmid": "" }, { "name": "B cell activation", "id": "GO:0042113", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042113", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" } ], "pmid": "" }, { "name": "negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction", "id": "GO:0051898", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051898", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" } ], "pmid": "" }, { "name": "regulation of protein metabolic process", "id": "GO:0051246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051246", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" } ], "pmid": "" }, { "name": "negative regulation of B cell activation", "id": "GO:0050869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050869", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" } ], "pmid": "" }, { "name": "regulation of immune system process", "id": "GO:0002682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002682", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 590, "end_pos": 592, "annotation": "n_glycosylation_sequon" }, { "start_pos": 744, "end_pos": 746, "annotation": "n_glycosylation_sequon" }, { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSU2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 780, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSU2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSU2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QSU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" }, { "id": "PS51376", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51376" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DBB", "eco_id": "ECO_0000259", "start_pos": 199, "end_pos": 326, "start_aa": "Val", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QSU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU2" }, { "id": "PS50104", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50104" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TIR", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 152, "start_aa": "Asn", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 611 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 }, { "start_pos": 244, "end_pos": 246 }, { "start_pos": 590, "end_pos": 592 }, { "start_pos": 744, "end_pos": 746 }, { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A5G2QS32-1", "uniprot_ac": "A0A5G2QS32", "uniprot_id": "A0A5G2QS32_PIG", "mass": { "chemical_mass": 87773.0, "monoisotopic_mass": 87773.0 }, "refseq": {}, "gene_names": [ { "name": "CUL4A", "type": "recommended", "evidence": [ { "id": "A0A5G2QS32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS32" } ] } ], "protein_names": [ { "name": "Cullin-4A", "type": "recommended", "evidence": [ { "id": "A0A5G2QS32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS32/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS32" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CUL4A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS32", "locus": { "chromosome": "11", "start_pos": 78589193, "end_pos": 78557013, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009556", "url": "https://www.ensembl.org/id/ENSSSCG00000009556" } ] } } ], "crossref": [ { "id": "A0A5G2QS32", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS32", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009556", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009556", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001373", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001373", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019559", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019559", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036317", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036317", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045093", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045093", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059120", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059120", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11932", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11932", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00888", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00888", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10557", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10557", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26557", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26557", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-110314", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110314", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5696394", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696394", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5696395", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696395", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5696400", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696400", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6781823", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6781823", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6782135", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782135", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6782210", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782210", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QS32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS32-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RG48", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RG48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RG48-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RG48-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFK3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFK3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHN6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHN6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLS4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLS4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RN43", "url": "https://www.uniprot.org/uniprotkb/F1RN43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RN43-1", "url": "https://www.uniprot.org/uniprotkb/F1RN43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADETPRKGSFSALVGHTNGLTKPASLAAAAVTSKPGGSGGSKKLVIKNFRDRPKLPDNYTQDTWHKLHEAVKAIQSSTSIRYNLEELYQAVENLCSHKVAPTLYQQLREACESHVQAQILQFREYSLDSVFFLKKINTCWQDHCRQMIMVRSIFLFLDRTYVLQNSLLPSIWDMGLELFRSHVISDRMVQTKTIDGILLLIARERSGEAVDRSLLRGLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLTQMYQLFSRVRGGQQALLQHWSEYIKTFGTTIVINPEKDKDMVQDLLDFKDRVDHVIDVCFQRNEKFINLMKESFEAFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERILDKVMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQYMQNQSDPGSIDLTVNILTMGYWPTYTPMDVHLTPEMVKLQEVFKTFYLGKHSGRKLQWQTALGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFGFEEIKAATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFFFNGDFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDSPNQYHYVA", "length": 761, "header": "tr|A0A5G2QS32-1|A0A5G2QS32_PIG Isoform 1 of Cullin-4A OS=Sus scrofa OX=9823 GN=CUL4A PE=1 SV=2 CANONICAL=A0A5G2QS32-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QS32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS32/entry#A0A5G2QS32-1", "sequence": { "sequence": "MADETPRKGSFSALVGHTNGLTKPASLAAAAVTSKPGGSGGSKKLVIKNFRDRPKLPDNYTQDTWHKLHEAVKAIQSSTSIRYNLEELYQAVENLCSHKVAPTLYQQLREACESHVQAQILQFREYSLDSVFFLKKINTCWQDHCRQMIMVRSIFLFLDRTYVLQNSLLPSIWDMGLELFRSHVISDRMVQTKTIDGILLLIARERSGEAVDRSLLRGLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLTQMYQLFSRVRGGQQALLQHWSEYIKTFGTTIVINPEKDKDMVQDLLDFKDRVDHVIDVCFQRNEKFINLMKESFEAFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERILDKVMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQYMQNQSDPGSIDLTVNILTMGYWPTYTPMDVHLTPEMVKLQEVFKTFYLGKHSGRKLQWQTALGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFGFEEIKAATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFFFNGDFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDSPNQYHYVA", "length": 761, "header": "tr|A0A5G2QS32-1|A0A5G2QS32_PIG Isoform 1 of Cullin-4A OS=Sus scrofa OX=9823 GN=CUL4A PE=1 SV=2 CANONICAL=A0A5G2QS32-1" }, "locus": { "chromosome": "11", "start_pos": 78587838, "end_pos": 78557212, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071346.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071346.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067602.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067602.2" } ] } }, { "isoform_ac": "A0A5G2RG48-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS32/entry#A0A5G2RG48-1", "sequence": { "sequence": "MADETPRKGSFSALVGHTNGLTKPASLAAAAVTSKPGGSGGSKKLVIKNFRDRPKLPDNYTQDTWHKLHEAVKAIQSSTSIRYNLEELYQAVENLCSHKVAPTLYQQLREACESHVQAQILQFREDSLDSVFFLKKINTCWQDHCRQMIMVRSIFLFLDRTYVLQNSLLPSICLGSRSWRRDMGLELFRSHVISDRMVQTKTIDGILLLIARERSGEAVDRSLLRGLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLTQMYQLFSRVRGGQQALLQHWSEYIKTFGTTIVINPEKDKDMVQDLLDFKDRVDHVIDVCFQRNEKFINLMKESFEAFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERILDKVMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQYMQNQSDPGSIDLTVNILTMGYWPTYTPMDVHLTPEMVKLQEVFKTFYLGKHSGRKLQWQTALGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFGFEEIKAATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFFFNGDFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDSPNQYHYVA", "length": 769, "header": "tr|A0A5G2RG48-1|A0A5G2QS32_PIG Computationally mapped isoform of Cullin-4A OS=Sus scrofa OX=9823 GN=CUL4A PE=1 SV=2 CANONICAL=A0A5G2QS32-1" }, "locus": { "chromosome": "11", "start_pos": 78587838, "end_pos": 78557212, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073791.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073791.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070119.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070119.2" } ] } }, { "isoform_ac": "A0A8W4FFK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS32/entry#A0A8W4FFK3-1", "sequence": { "sequence": "MWKQPRAGSLERETARGKAVENLCSHKVAPTLYQQLREACESHVQAQILQFREDSLDSVFFLKKINTCWQDHCRQMIMVRSIFLFLDRTYVLQNSLLPSICLGSRSWRRDMGLELFRSHVISDRMVQTKTIDGILLLIARERSGEAVDRSLLRGLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLTQMYQLFSRVRGGQQALLQHWSEYIKTFGTTIVINPEKDKDMVQDLLDFKDRVDHVIDVCFQRNEKFINLMKESFEAFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERILDKVMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQYMQNQSDPGSIDLTVNILTMGYWPTYTPMDVHLTPEMVKLQEVFKTFYLGKHSGRKLQWQTALGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFGFEEIKAATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFFFNGDFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDSPNQYHYVA", "length": 697, "header": "tr|A0A8W4FFK3-1|A0A5G2QS32_PIG Computationally mapped isoform of Cullin-4A OS=Sus scrofa OX=9823 GN=CUL4A PE=1 SV=1 CANONICAL=A0A5G2QS32-1" }, "locus": { "chromosome": "11", "start_pos": 78587838, "end_pos": 78565564, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094865.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094865.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077648.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077648.1" } ] } }, { "isoform_ac": "A0A8W4FHN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS32/entry#A0A8W4FHN6-1", "sequence": { "sequence": "MADETPRKGSFSALVGHTNGLTKPASLAAAAVTSKPGGSGGSKKLVIKNFRDRPKLPDNYTQDTWHKLHEAVKAIQSSTSIRYNLEELYQAVENLCSHKVAPTLYQQLREACESHVQAQILQFREYPFLVCTDSLDSVFFLKKINTCWQDHCRQMIMVRSIFLFLDRTYVLQNSLLPSIWDMGLELFRSHVISDRMVQTKTIDGILLLIARERSGEAVDRSLLRGLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLTQMYQLFSRVRGGQQALLQHWSEYIKTFGTTIVINPEKDKDMVQDLLDFKDRVDHVIDVCFQRNEKFINLMKESFEAFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERILDKVMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHGKAGGRTPFTLESSCPDLLCSQYMQNQSDPGSIDLTVNILTMGYWPTYTPMDVHLTPEVSVREALCPLLVSGWCCPGITGVPLVTWCRAASPQKALEPTLRENFSLSVVPGKLCLHVPSSLTYCVHQLAVRKALAQPCLPAAVGLPVWLLPHVRCEGPLCPHHLGEEPGARGPAVSVPPEQGAGGRPAVSVSLWRGVAGSCVHVTLVSRDVRAPGRTLGSGP", "length": 712, "header": "tr|A0A8W4FHN6-1|A0A5G2QS32_PIG Computationally mapped isoform of Cullin-4A OS=Sus scrofa OX=9823 GN=CUL4A PE=1 SV=1 CANONICAL=A0A5G2QS32-1" }, "locus": { "chromosome": "11", "start_pos": 78579653, "end_pos": 78557212, "strand": "-", "evidence": [ { 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"id": "IPR041815", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041815", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050227", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050227", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100151805", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151805", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HEIDTNC", "url": "https://omabrowser.org/oma/group/HEIDTNC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BFE6", "url": "https://www.orthodb.org/?gene=A0A287BFE6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47977", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47977", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8854214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8876198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BFE6", "url": "https://www.uniprot.org/uniprotkb/A0A287BFE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BFE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BFE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R497", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R497", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R497-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R497-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RN98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RN98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RN98-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RN98-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1Y626", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y626", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1Y626-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y626-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARDYDHLFKLLIIGDSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKRKKRCC", "length": 184, "header": "tr|A0A287B0Y9-1|A0A287B0Y9_PIG Isoform 1 of Ras-related protein Rab-35 OS=Sus scrofa OX=9823 GN=RAB35 PE=1 SV=1 CANONICAL=A0A287B0Y9-1" }, "isoforms": [ { "isoform_ac": "A0A287B0Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9/entry#A0A287B0Y9-1", "sequence": { "sequence": "MARDYDHLFKLLIIGDSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKRKKRCC", "length": 184, "header": "tr|A0A287B0Y9-1|A0A287B0Y9_PIG Isoform 1 of Ras-related protein Rab-35 OS=Sus scrofa OX=9823 GN=RAB35 PE=1 SV=1 CANONICAL=A0A287B0Y9-1" }, "locus": { "chromosome": "14", "start_pos": 40141133, "end_pos": 40126404, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058621.1", "url": "https://www.ensembl.org/id/ENSSSCT00000058621.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050063.1", "url": "https://www.ensembl.org/id/ENSSSCP00000050063.1" } ] } }, { "isoform_ac": "A0A287BFE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9/entry#A0A287BFE6-1", "sequence": { "sequence": "MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKRKKRCC", "length": 201, "header": "tr|A0A287BFE6-1|A0A287BFE6_PIG Computationally mapped isoform of Ras-related protein Rab-35 OS=Sus scrofa OX=9823 GN=RAB35 PE=1 SV=1 CANONICAL=A0A287B0Y9-1" }, "locus": { "chromosome": "14", "start_pos": 40141133, "end_pos": 40126404, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051638.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051638.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054851.1", "url": "https://www.ensembl.org/id/ENSSSCP00000054851.1" } ] } }, { "isoform_ac": "A0A5G2QWE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9/entry#A0A5G2QWE8-1", "sequence": { "sequence": "MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILDVQLHHRAGPPSKERQLSKTTAAATERCGEAHKEQ", "length": 152, "header": "tr|A0A5G2QWE8-1|A0A287B0Y9_PIG Computationally mapped isoform of Ras-related protein Rab-35 OS=Sus scrofa OX=9823 GN=RAB35 PE=1 SV=1 CANONICAL=A0A287B0Y9-1" }, "locus": { "chromosome": "14", "start_pos": 40141133, "end_pos": 40126426, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084290.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084290.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062509.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062509.1" } ] } }, { "isoform_ac": "A0A5G2R497-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9/entry#A0A5G2R497-1", "sequence": { "sequence": "KLRDRGLANMLVCAGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKRKKRCC", "length": 181, "header": "tr|A0A5G2R497-1|A0A287B0Y9_PIG Computationally mapped isoform of Ras-related protein Rab-35 OS=Sus scrofa OX=9823 GN=RAB35 PE=1 SV=1 CANONICAL=A0A287B0Y9-1" }, "locus": { "chromosome": "14", "start_pos": 40132591, "end_pos": 40126404, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078001.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078001.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072033.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072033.1" } ] } }, { "isoform_ac": "A0A5G2RN98-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9/entry#A0A5G2RN98-1", "sequence": { "sequence": "MALIALDIVFIALFHCILSFVLTSTEGSLGQEPCLFCSGLCPPGTRSAWGGSDQGSRGLANMLVCAGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKRKKRCC", "length": 233, "header": "tr|A0A5G2RN98-1|A0A287B0Y9_PIG Computationally mapped isoform of Ras-related protein Rab-35 OS=Sus scrofa OX=9823 GN=RAB35 PE=1 SV=1 CANONICAL=A0A287B0Y9-1" }, "locus": { "chromosome": "14", "start_pos": 40132475, "end_pos": 40126404, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078379.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078379.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074270.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074270.1" } ] } }, { "isoform_ac": "A0A8D1Y626-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9/entry#A0A8D1Y626-1", "sequence": { "sequence": "KARPYTVLCVLLSSPAFSPAGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKRKKRCC", "length": 204, "header": "tr|A0A8D1Y626-1|A0A287B0Y9_PIG Computationally mapped isoform of Ras-related protein Rab-35 OS=Sus scrofa OX=9823 GN=RAB35 PE=1 SV=1 CANONICAL=A0A287B0Y9-1" }, "locus": { "chromosome": "14", "start_pos": 40136761, "end_pos": 40126404, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068409.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068409.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066941.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066941.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWE8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100151805", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151805", "resource": "KEGG Pathway" }, { "id": "R-SSC-8854214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "resource": "Reactome", "description": "TBC/RABGAPs" }, { "id": "R-SSC-8876198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "resource": "Reactome", "description": "RAB GEFs exchange GTP for GDP on RABs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AC58JL54-1", "protein_name": "Ras-related protein Rab-35", "gene_name": "rab35a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARDYDYLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPASKVVETNDAQKFAEQMGIRLFETSAKENLNVEDMFNCITELVLKARKESVAKQQQQQQSEVVKLSKSNKRKKKCC", "length": 201 }, "evidence": [ { "id": "A0A287B0Y9", "url": "https://omabrowser.org/oma/group/A0A287B0Y9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q15286-1", "protein_name": "Ras-related protein Rab-35", "gene_name": "RAB35", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKRKKRCC", "length": 201 }, "evidence": [ { "id": "A0A287B0Y9", "url": "https://omabrowser.org/oma/group/A0A287B0Y9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5U316-1", "protein_name": "Ras-related protein Rab-35", "gene_name": "Rab35", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKRKKRCC", "length": 201 }, "evidence": [ { "id": "A0A287B0Y9", "url": "https://omabrowser.org/oma/group/A0A287B0Y9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6PHN9-1", "protein_name": "Ras-related protein Rab-35", "gene_name": "Rab35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKRKKRCC", "length": 201 }, "evidence": [ { "id": "A0A287B0Y9", "url": "https://omabrowser.org/oma/group/A0A287B0Y9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9W5X0-1", "protein_name": "Rab35, isoform A", "gene_name": "Rab35", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MARGFDHLFKLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTVDIEGMRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFANVRRWLEEIQNNCDVVKKVLVGNKNDDPDRKVVITEDAQRFAKQMDIELFETSAKDNINVENMFLSITRQVLDHKLRTSPNEQQKDTLHLKPNPKGSKGGKCCR", "length": 201 }, "evidence": [ { "id": "A0A287B0Y9", "url": "https://omabrowser.org/oma/group/A0A287B0Y9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "phosphatidylinositol-4,5-bisphosphate binding", "id": "GO:0005546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005546", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "GDP binding", "id": "GO:0019003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019003", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "clathrin-coated pit", "id": "GO:0005905", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005905", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "melanosome", "id": "GO:0042470", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042470", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "intercellular bridge", "id": "GO:0045171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045171", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "clathrin-coated endocytic vesicle", "id": "GO:0045334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045334", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "cell projection membrane", "id": "GO:0031253", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031253", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "clathrin-coated vesicle", "id": "GO:0030136", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030136", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "neuron projection development", "id": "GO:0031175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031175", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "endosomal transport", "id": "GO:0016197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016197", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "protein localization to endosome", "id": "GO:0036010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036010", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "mitotic cytokinesis", "id": "GO:0000281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000281", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "antigen processing and presentation", "id": "GO:0019882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019882", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "plasma membrane to endosome transport", "id": "GO:0048227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048227", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "endocytic recycling", "id": "GO:0032456", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032456", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" }, { "name": "Rab protein signal transduction", "id": "GO:0032482", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032482", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Y9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] }, { "id": "R-SSC-8854173", "name": "TBC RabGAPs accelerate GTP hydrolysis by RAB35", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, clathrin-coated endocytic vesicle membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8854173", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854173" } ] }, { "id": "R-SSC-8877612", "name": "DENND1s exchange GTP for GDP on RAB35", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, recycling endosome membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8877612", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8877612" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287B0Y9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 184, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287B0Y9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287B0Y9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A5G2QQ04-1", "uniprot_ac": "A0A5G2QQ04", "uniprot_id": "A0A5G2QQ04_PIG", "mass": { "chemical_mass": 111658.0, "monoisotopic_mass": 111658.0 }, "refseq": {}, "gene_names": [ { "name": "EMC1", "type": "recommended", "evidence": [ { "id": "A0A5G2QQ04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04" } ] } ], "protein_names": [ { "name": "ER membrane protein complex subunit 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QQ04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ04", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EMC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04", "locus": { "chromosome": "6", "start_pos": 77718849, "end_pos": 77747771, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003489", "url": "https://www.ensembl.org/id/ENSSSCG00000003489" } ] } } ], "crossref": [ { "id": "A0A5G2QQ04", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ04", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003489", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003489", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011678", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011678", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21573", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21573", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21573:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21573:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07774", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07774", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25293", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25293", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ACB6", "url": "https://www.uniprot.org/uniprotkb/A0A287ACB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACB6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFL4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ04", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ04-1", "url": 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"MAAGWASRFWLWAALLIPAAAVYEDQVGKFDWRQQYVGKLKFASLEFSPGSKKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGAVDAMLLYGQDAITVSNGGRIMRSWETNIGGLNWEMTLDSGSFQALGLVGLQESVRYVAVLKKTTLALHHLSSGHLKWAEHLPESDNIHYQMVYSYGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQSLTGACGVVDEAVLVCPDPSSRSLQTLALETEWELRQIPLQSLDLEFASGFQPRVLPTQPNPMDPSRAQFFLQLSPSHYALLHHHHGVLSLLKNFPQTALVSFATTGEKTVAAVMTCRNEVKPSSSEDGSMGSFSEKSSAQDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQNGTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGRVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKETGMSSLYVFNPIFGKWSQVAPPVLKRPILQSLLLPIMDQDYAKVLLLIDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVTVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDVHHERTFIGIFLVDGVTGRIIHSSVQRKARGPVHIVHSENWVVYQYWNTKARRNEFTALELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFPSPISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQVKLLNRAWR", "length": 992, "header": "tr|A0A5G2QQ04-1|A0A5G2QQ04_PIG Isoform 1 of ER membrane protein complex subunit 1 OS=Sus scrofa OX=9823 GN=EMC1 PE=1 SV=1 CANONICAL=A0A5G2QQ04-1" }, "isoforms": [ { "isoform_ac": "A0A287ACB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04/entry#A0A287ACB6-1", "sequence": { "sequence": "MAFGGCPRACLNQSARRPASPCRLHAFLCFQGDFSRRLGIPESRASHQRLCLRPQLYGSSGACGPVHAGPAVGGARAPIMAAAVAAAASRFWLWAALLIPAAAVYEDQVGKFDWRQQYVGKLKFASLEFSPGSKKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGAVDAMLLYGQDAITVSNGGRIMRSWETNIGGLNWEMTLDSGSFQALGLVGLQESVRYVAVLKKTTLALHHLSSGHLKWAEHLPESDNIHYQMVYSYGSGVVWALGVVPFSHVNIVKFNVEDGEIVHWADSLDLEFASGFQPRVLPTQPNPMDPSRAQFFLQLSPSHYALLHHHHGVLSLLKNFPQTALVSFATTGEKTVAAVMTCRNEVQKPSSSEDGSMGSFSEKSSAQDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQNGTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGRVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKETGMSSLYVFNPIFGKWSQVAPPVLKRPILQSLLLPIMDQDYAKVLLLIDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVTVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDVHHERTFIGIFLVDGVTGRIIHSSVQRKARGPVHIVHSENWVVYQYWNTKARRNEFTALELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFPSPISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQVKLLNRAWR", "length": 1027, "header": "tr|A0A287ACB6-1|A0A5G2QQ04_PIG Computationally mapped isoform of ER membrane protein complex subunit 1 OS=Sus scrofa OX=9823 GN=EMC1 PE=1 SV=3 CANONICAL=A0A5G2QQ04-1" }, "locus": { "chromosome": "6", "start_pos": 77747771, "end_pos": 77724510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061644.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061644.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041451.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041451.3" } ] } }, { "isoform_ac": "A0A5G2QFL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04/entry#A0A5G2QFL4-1", "sequence": { "sequence": "MAAAVAAAASRFWLWAALLIPAAAVYEDQVGKFDWRQQYVGKLKFASLEFSPGSKKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGAVDAMLLYGQDAITVSNGGRIMRSWETNIGGLNWEMTLDSGSFQALGLVGLQESVRYVAVLKKTTLALHHLSSGHLKWAEHLPESDNIHYQMVYSYGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQSLTGACGVVDEAVLVCPDPSSRSLQTLALETEWELRQIPLQSLDLEFASGFQPRVLPTQPNPMDPSRAQFFLQLSPSHYALLHHHHGVLSLLKNFPQTALVSFATTGEKTVAAVMTCRNEVQKPSSSEDGSMGSFSEKSSAQDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQNGTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGRVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKETGMSSLYVFNPIFGKWSQVAPPVLKRPILQSLLLPIMDQDYAKVLLLIDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVTVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDVHHERTFIGIFLVDGVTGRIIHSSVQRKARGPVHIVHSENWVVYQYWNTKARRNEFTALELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFPSPISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQVKLLNRAWR", "length": 996, "header": "tr|A0A5G2QFL4-1|A0A5G2QFL4_PIG Computationally mapped isoform of ER membrane protein complex subunit 1 OS=Sus scrofa OX=9823 GN=EMC1 PE=1 SV=2 CANONICAL=A0A5G2QQ04-1" }, "locus": { "chromosome": "6", "start_pos": 77747534, "end_pos": 77724510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087478.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087478.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060818.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060818.2" } ] } }, { "isoform_ac": "A0A5G2QQ04-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04/entry#A0A5G2QQ04-1", "sequence": { "sequence": "MAAGWASRFWLWAALLIPAAAVYEDQVGKFDWRQQYVGKLKFASLEFSPGSKKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGAVDAMLLYGQDAITVSNGGRIMRSWETNIGGLNWEMTLDSGSFQALGLVGLQESVRYVAVLKKTTLALHHLSSGHLKWAEHLPESDNIHYQMVYSYGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQSLTGACGVVDEAVLVCPDPSSRSLQTLALETEWELRQIPLQSLDLEFASGFQPRVLPTQPNPMDPSRAQFFLQLSPSHYALLHHHHGVLSLLKNFPQTALVSFATTGEKTVAAVMTCRNEVKPSSSEDGSMGSFSEKSSAQDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQNGTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGRVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKETGMSSLYVFNPIFGKWSQVAPPVLKRPILQSLLLPIMDQDYAKVLLLIDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVTVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDVHHERTFIGIFLVDGVTGRIIHSSVQRKARGPVHIVHSENWVVYQYWNTKARRNEFTALELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFPSPISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQVKLLNRAWR", "length": 992, "header": "tr|A0A5G2QQ04-1|A0A5G2QQ04_PIG Isoform 1 of ER membrane protein complex subunit 1 OS=Sus scrofa OX=9823 GN=EMC1 PE=1 SV=1 CANONICAL=A0A5G2QQ04-1" }, "locus": { "chromosome": "6", "start_pos": 77747534, "end_pos": 77724510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089360.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089360.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066141.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066141.1" } ] } }, { "isoform_ac": "A0A5G2RH38-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04/entry#A0A5G2RH38-1", "sequence": { "sequence": "MPGRRWAGPGLLSWRRRWRRLLPDSGCGPPCLSLRPRSTKTKWASLTVWRHVDKGTAEGAVDAMLLYGQDAITVSNGGRIMRSWETNIGGLNWEMTLDSGSFQALGLVGLQESVRYVAVLKKTTLALHHLSSGHLKWAEHLPESDNIHYQMVYSYGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQSLTGACGVVDEAVLVCPDPSSRSLQTLALETEWELRQIPLQSLDLEFASGFQPRVLPTQPNPMDPSRAQFFLQLSPSHYALLHHHHGVLSLLKNFPQTALVSFATTGEKTVAAVMTCRNEVQKPSSSEDGSMGSFSEKSSAQDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQNGTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGRVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKAGIPDGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKETGMSSLYVFNPIFGKWSQVAPPVLKRPILQSLLLPIMDQDYAKVLLLIDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVTVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDVHHERTFIGIFLVDGVTGRIIHSSVQRKARGPVHIVHSENWVVYQYWNTKARRNEFTALELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFPSPISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQVKLLNRAWR", "length": 970, "header": "tr|A0A5G2RH38-1|A0A5G2QQ04_PIG Computationally mapped isoform of ER membrane protein complex subunit 1 OS=Sus scrofa OX=9823 GN=EMC1 PE=1 SV=1 CANONICAL=A0A5G2QQ04-1" }, "locus": { "chromosome": "6", "start_pos": 77747572, "end_pos": 77724510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069619.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069619.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070610.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070610.1" } ] } }, { "isoform_ac": "A0A5G2RLN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04/entry#A0A5G2RLN7-1", "sequence": { "sequence": "MAAAVAAAASRFWLWAALLIPAAAVYEDQVGKFDWRQQYVGKLKFASLEFSPGSKKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGAVDAMLLYGQDAITVSNGGRIMRSWETNIGGLNWEMTLDSGSFQALGLVGLQESVRYVAVLKKTTLALHHLSSGHLKWAEHLPESDNIHYQMVYSYGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQSLTGACGVVDEAVLVCPDPSSRSLQTLALETEWELRQIPLQSLDLEFASGFQPRVLPTQPNPMDPSRAQFFLQLSPSHYALLHHHHGVLSLLKNFPQTALVSFATTGEKTVAAVMTCRNEVKPSSSEDGSMGSFSEKSSAQDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQNGTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGRVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKAGIPDGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKETGMSSLYVFNPIFGKWSQVAPPVLKRPILQSLLLPIMDQDYAKVLLLIDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVTVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDVHHERTFIGIFLVDGVTGRIIHSSVQRKARGPVHIVHSENWVVYQYWNTKARRNEFTALELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFPSPISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQVKLLNRAWR", "length": 998, "header": "tr|A0A5G2RLN7-1|A0A5G2RLN7_PIG Computationally mapped isoform of ER membrane protein complex subunit 1 OS=Sus scrofa OX=9823 GN=EMC1 PE=1 SV=1 CANONICAL=A0A5G2QQ04-1" }, "locus": { "chromosome": "6", "start_pos": 77747534, "end_pos": 77724510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081229.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081229.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073288.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073288.1" } ] } }, { "isoform_ac": "A0A8W4FGA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04/entry#A0A8W4FGA1-1", "sequence": { "sequence": "MAAAVAAAASRFWLWAALLIPAAAVYEDQVGKFDWRQQYVGKLKFASLEFSPGSKKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGAVDAMLLYGQDAITVSNGGRIMRSWETNIGGLNWEMTLDSGSFQALGLVGLQESVRYVAVLKKTTLALHHLSSGHLKWAEHLPESDNIHYQMVYSYGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQSLTGACGVVDEAVLVCPDPSSRSLQTLALETEWELRQIPLQSLDLEFASGFQPRVLPTQPNPMDPSRAQFFLQLSPSHYALLHHHHGVLSLLKNFPQTALVSFATTGEKTVAAVMTCRNEVKPSSSEDGSMGSFSEKSSAQDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQNGTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGRVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVTVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDVHHERTFIGIFLVDGVTGRIIHSSVQRKARGPVHIVHSENWVVYQYWNTKARRNEFTALELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFPSPISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQVKLLNRAWR", "length": 941, "header": "tr|A0A8W4FGA1-1|A0A5G2QQ04_PIG Computationally mapped isoform of ER membrane protein complex subunit 1 OS=Sus scrofa OX=9823 GN=EMC1 PE=1 SV=1 CANONICAL=A0A5G2QQ04-1" }, "locus": { "chromosome": "6", "start_pos": 77747534, "end_pos": 77724510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106465.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106465.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077339.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077339.1" } ] } }, { "isoform_ac": "F1SUQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04/entry#F1SUQ3-1", "sequence": { "sequence": "MAAAVAAAASRFWLWAALLIPAAAVYEDQVGKFDWRQQYVGKLKFASLEFSPGSKKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGAVDAMLLYGQDAITVSNGGRIMRSWETNIGGLNWEMTLDSGSFQALGLVGLQESVRYVAVLKKTTLALHHLSSGHLKWAEHLPESDNIHYQMVYSYGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQSQSLDLEFASGFQPRVLPTQPNPMDPSRAQFFLQLSPSHYALLHHHHGVLSLLKNFPQTALVSFATTGEKTVAAVMTCRNEVKPSSSEDGSMGSFSEKSSAQDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQNGTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGRVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKETGMSSLYVFNPIFGKWSQVAPPVLKRPILQSLLLPIMDQDYAKVLLLIDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVTVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDVHHERTFIGIFLVDGVTGRIIHSSVQRKARGPVHIVHSENWVVVRRGPPPGPDPARGWGRSPCVTNAFLASCSRNQLLLCVFIAFRTPPWLAAEGLVGSWAQESNCPHLVPGLHLLTLQPQASCLTLCVILTYEMGVTAVISSLV", "length": 848, "header": "tr|F1SUQ3-1|A0A5G2QQ04_PIG Computationally mapped isoform of ER membrane protein complex subunit 1 OS=Sus scrofa OX=9823 GN=EMC1 PE=1 SV=5 CANONICAL=A0A5G2QQ04-1" }, "locus": { "chromosome": "6", "start_pos": 77747534, "end_pos": 77727916, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003876.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003876.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003788.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003788.5" } ] } }, { "isoform_ac": "I3LHU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04/entry#I3LHU9-1", "sequence": { "sequence": "MAAAVAAAASRFWLWAALLIPAAAVYEDQVGKFDWRQQYVGKLKFASLEFSPGSKKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGAVDAMLLYGQDAITVSNGGRIMRSWETNIGGLNWEMTLDSGSFQALGLVGLQESVRYVAVLKKTTLALHHLSSGHLKWAEHLPESDNIHYQMVYSYGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQSLTGACGVVDEAVLVCPDPSSRSLQTLALETEWELRQIPLQSLDLEFASGFQPRVLPTQPNPMDPSRAQFFLQLSPSHYALLHHHHGVLSLLKNFPQTALVSFATTGEKTVAAVMTCRNEVDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQNGTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGRVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKADGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKETGMSSLYVFNPIFGKWSQVAPPVLKRPILQSLLLPIMDQDYAKVLLLIDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVTVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDVHHERTFIGIFLVDGVTGRIIHSSVQRKARGPVHIVHSENWVVYQYWNTKARRNEFTALELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFPSPISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQVKLLNRAWR", "length": 975, "header": "tr|I3LHU9-1|A0A5G2QQ04_PIG Computationally mapped isoform of ER membrane protein complex subunit 1 OS=Sus scrofa OX=9823 GN=EMC1 PE=1 SV=3 CANONICAL=A0A5G2QQ04-1" }, "locus": { "chromosome": "6", "start_pos": 77747534, "end_pos": 77724510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026199.3", "url": "https://www.ensembl.org/id/ENSSSCT00000026199.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023646.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023646.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ3", "url": "https://www.uniprot.org/uniprotkb/F1SUQ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "EMC complex", "id": "GO:0072546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072546", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ04", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ04" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "tail-anchored membrane protein insertion into ER membrane", 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00736", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00736", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10587", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10587", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-156842", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156842", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020946118", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946118", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ANN7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANN7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BF97", "url": 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"categories": [ "Protein" ] } ], "sequence": { "sequence": "MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKSLAGSSGPGASSGPSGDHSELVIRIASLEVENQSLRGVVQDLQQAVSKLEARLSALEKTSPAHRATAPQTQHVSPMRQVEPPSRKAATATEDDEDDDIDLFGSDEEEDKEAARLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNKI", "length": 280, "header": "tr|A0A5G2QUG9-1|A0A5G2QUG9_PIG Isoform 1 of Elongation factor 1-delta OS=Sus scrofa OX=9823 GN=EEF1D PE=1 SV=2 CANONICAL=A0A5G2QUG9-1" }, "isoforms": [ { "isoform_ac": "A0A287ANN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUG9/entry#A0A287ANN7-1", "sequence": { "sequence": "MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQVGVVGGCACTGRGLERAGVLIPPSPPVLQSSGPGASSGPSGDHSELVIRIASLEVENQSLRGVVQDLQQAVSKLEARLSALEKTSPAHRATAPQTQHVSPMRQVEPPSRKAATATEDDEDDDIDLFGSDEEEDKEAARLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVSGAWPGGNKVQPCVGFEFPSSTLSPAARTPSPAGTRMLQGELG", "length": 317, "header": "tr|A0A287ANN7-1|A0A5G2QUG9_PIG Computationally mapped isoform of Elongation factor 1-delta OS=Sus scrofa OX=9823 GN=EEF1D PE=1 SV=2 CANONICAL=A0A5G2QUG9-1" }, "locus": { "chromosome": "4", "start_pos": 983267, "end_pos": 977438, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052787.2", "url": "https://www.ensembl.org/id/ENSSSCT00000052787.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045626.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045626.2" } ] } }, { "isoform_ac": "A0A287BF97-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUG9/entry#A0A287BF97-1", "sequence": { "sequence": "ARKMRSGKASCALETVWEDKQKHGEDERRCHGPEAAQAAATQQLLAEAEAEAEAPAVNGLGREEAEAAGPDGGGGGSDPGRRPLQKKRKRSPKGWPGPADPALMGLSADHVWLDKPLFDQAERSYRQRLADVAAQAGRPPAPAARGPCTHGSQVACHHVTWGVWANKSAFDQAERAFVEWSQALLLAAEASGRQGASGPRLVRQPSPPADEQPPPPGSLQALVREVWLEKPRYDAAETAFYEALVDSHPPGKVRLQERAGQAEGARRGRRDRRARNAVGGKRLGPRRSDGEAPSALPYWYFLHKDAEAPWLSKPAYDSAECRHHAAEALRMAWRLEAASLAHRPSVRSGPSMSSLRPNRKMATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKSLAGSSGPGASSGPSGDHSELVIRIASLEVENQSLRGVVQDLQQAVSKLEARLSALEKTSPAHRATAPQTQHVSPMRQVEPPSRKAATATEDDEDDDIDLFGSDEEEDKEAARLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVSGRTPLGGGAAPRDRAPCDPRPLPLRCRVWTLPPSTRSESPGPRLRVRCLAANKD", "length": 684, "header": "tr|A0A287BF97-1|A0A5G2QUG9_PIG Computationally mapped isoform of Elongation factor 1-delta OS=Sus scrofa OX=9823 GN=EEF1D PE=1 SV=3 CANONICAL=A0A5G2QUG9-1" }, "locus": { "chromosome": "4", "start_pos": 982235, "end_pos": 974799, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039371.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039371.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054997.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054997.3" } ] } }, { "isoform_ac": "A0A5G2QUG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUG9/entry#A0A5G2QUG9-1", "sequence": { "sequence": "MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKSLAGSSGPGASSGPSGDHSELVIRIASLEVENQSLRGVVQDLQQAVSKLEARLSALEKTSPAHRATAPQTQHVSPMRQVEPPSRKAATATEDDEDDDIDLFGSDEEEDKEAARLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNKI", "length": 280, "header": "tr|A0A5G2QUG9-1|A0A5G2QUG9_PIG Isoform 1 of Elongation factor 1-delta OS=Sus scrofa OX=9823 GN=EEF1D PE=1 SV=2 CANONICAL=A0A5G2QUG9-1" }, "locus": { "chromosome": "4", "start_pos": 982183, "end_pos": 977438, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068566.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068566.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065617.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065617.2" } ] } }, { "isoform_ac": "F1SEV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUG9/entry#F1SEV8-1", "sequence": { "sequence": "MRSGKASCALETVWEDKQKHGEDERRCHGPEAAQAAATQQLLAEAEAEAEAPAVNGLGREEAEAAGPDGGGGGSDPGRRPLQKKRKRSPKGWPGPADPALMGLSADHVWLDKPLFDQAERSYRQRLADVAAQAGRPPAPAARGPCTHGSQVACHHVTWGVWANKSAFDQAERAFVEWSQALLLAAEASGRQGASGPRLVRQPSPPADEQPPPPGSLQALVREVWLEKPRYDAAETAFYEALVDSHPPGKVRLQERAGQAEGARRGRRDRRARNAVGGKRLGPRRSDGEAPSALPYWYFLHKDAEAPWLSKPAYDSAECRHHAAEALRMAWRLEAASLAHRPSVRSGPSMSSLRPNRKMATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQVGVVGGCACTGRGLERAGVLIPPSPPVLQSSGPGASSGPSGDHSELVIRIASLEVENQSLRGVVQDLQQAVSKLEARLSALEKTSPAHRATAPQTQHVSPMRQVEPPSRKAATATEDDEDDDIDLFGSDEEEDKEAARLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNKI", "length": 642, "header": "tr|F1SEV8-1|F1SEV8_PIG Computationally mapped isoform of Elongation factor 1-delta OS=Sus scrofa OX=9823 GN=EEF1D PE=1 SV=5 CANONICAL=A0A5G2QUG9-1" }, "locus": { "chromosome": "4", "start_pos": 982183, "end_pos": 974808, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007619.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007619.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007416.5", "url": "https://www.ensembl.org/id/ENSSSCP00000007416.5" } ] } }, { "isoform_ac": "I3LT08-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUG9/entry#I3LT08-1", "sequence": { "sequence": 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"A0A5G2R8A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8A7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7M1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7M1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7M1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8P1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8P1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8P1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHQ1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7W3", "url": "https://www.uniprot.org/uniprotkb/I3L7W3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7W3-1", "url": "https://www.uniprot.org/uniprotkb/I3L7W3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASEVVCGLIFRLLLPICLAVACAFRYNGLSFVYLIYLLLIPLFSEPTKATMQGHTGRLLKSLCFISFSFLLLHIIFHITLASLEAQHHTAASYNCSTWEKTFRQIGFESLKGADVGNGIRVFVPDIGMFIASLTIWLVCRNIVQKPVGEEAAQYNPEFENEESAGGEKIDSEEALVYEEDLDEGDGVDGRLEESTKLKLFRRLASVASKLKEFIGNMITTAGKVVVTILLGSSGMMLPSLTSSVYFFVFLGLCTWWSWCRTFDPLLFSCLCVLLAIFTAGHLIGLYLYQFQFFQEAVPPDDYYARLFGIKSVIQIDCSSTWKIIANPDLSWYHHANPILLLVMYYTLATLIRIWLQEPLVQDERTKEEDRALACSPVPITAERRRSLWYATHYPTDERKLLSMTQDDYKPSDGLLVTVNGNPVDYHTIHPSLPLENGPAKADLYSTPQYRWEPPEDSSEKKEEEEEEREEFEEERSHEEKRSVKVHAMVSVFQFIMKQSYICALIAMMAWSITYHSWLTFVLLIWSCTLWMIRNRRKYAMISSPFMVIYGNLLLVLQYIWSFELPEIKKVPGFLEKKEPGELASKILFTITFWLLLRQHLTEQKALQEKEALLSEVKIGSQEDEEKDDDQDVHVDGEAPEKEDEEMTKEEKQELEEEEEEEDDQDVMKVLGNLVVALFIKYWIYVCGGMFFFVSFEGKIVMYKIIYMVLFLFCVALYQVHYEWWRRILKYFWMSVVIYTMLVLIFIYTYQFENFPGLWQNMTGLKKEKLEDLGLKQFTVAELFTRIFIPTSFLLVCILHLHYFHDRFLELTDLKSIPSKEDSTIYSHAKVNGRVYLIINRWVLQCFLSWLAHPEGSLPDLAMMNLTTTLEASEAKQLAGPEEEKPGGCLAKAKKGELSRDSEDEEEEEDEEEETSVSNESDHLRNKWHLVMDRLTVLLLKFLECFHRLQTFLWWVLELHVIKVVSSYIIWVSVKEVSLFNYVFLISWAFALPYAKLRRLASSVCTVWTCVIIVCKMLYQLQTIKPENFSVNCSLPNENQTNIPLHQLNKSLLYSAPIDPTEWVGLRKSAPLLVYLRNNLLMLEYYRGRNNLTAPVSKTIFHDITRLHLDDGLVNCAKYFINYFFYKFGLETCFLMSVNVIGQRMDFYAMIHACWLIAVLYRRRRKAIAEIWPKYCCFLACILSFQYLICIGFPPAPCRDYPWRFKGASFNDNIVKWLYFPDFIVRPNPVFLVYDFMLLLCASLQRQIFEDENKAAVRIMAGDNVEICMNLDAASFSQHNPVPDFIHCRSYLDMSKVIIFSYLFWFVLTIIFITGTTRISIFCMGYLVACFYFLLFGGDLLLKPIKSILRYWDWLIAYNVFVITMKNILSIGACGYIEKLVQNSCWLIQAFSLACTVKGYKMPDDDSSCKLPSGEAGIIWDSICFAFLLLQRRVFMSYYFLHVVADIKASQILASRGAELFQATIVKAVKARIEEEKKSMDQLKRQMDRIKARQQKYKKGKERMLSLTQESGEGQDIQKLSEEDDEITILFCSVVRSGDYYLFETDSEEEEEEEFKKEDEEPPRRSAFQRAIGKFASAILALPKSVIKLPKTILQYLIRAAKFVYQAWITDPKTALRQRRKEKKRSAREEQKRRRKGSGEGPVEWEDREAEPVKKKSDGPDNIIKRIFNILKFTWVLFLATVDSFTTWLNSISREHIDISTVLRIERCMLTREIKKGNVPTRESIHVYYQNHIMNLSRESGLDTIDDGPGGAAGAQSAHRMDSLDSHDSISSCYTEATMLFSRQSTLDDLDGPETVPKTSERARPGLRKMLSMDVSSSSAESASLASSEPTQCTTLYSRQGTTETIEEVEAEQDEEAPTGAQDTESPQDPTEDGDMEAPPSYSKAVSFERLSFDSRDDSAGQTHMAVSPDDSRSDRLEASILPPLTHELTASELLLNKMFRDDELEESEKFYVGQPRFLLLFYAMYNTLVARSEMVCYFVIILNHMVSASVITLVLPILIFLWAMLSVPRPSRRFWMMAIVYTEVAIVVKYFFQFGFFPWNKNVELYKDKPYHPPNIIGVEKKEGYVLYDLIQLLALFFHRSILKCHGLWDEDDIVDSGSDQEDSDGELSVGQGRRASSDSLKSINLAASVESVHVTFPEQPVTIRRKRPSSGSQMSQGSSFSSDRSKRGSTSTRNSSQKGSSVLSIKQKSKRELYMEKLQEHLIKAKAFTIKKALQIYVPVKQFFYNLIHPDYSAVTDVYVLMFLADTVDFVIIVFGFWAFGKHSAAADITSSLSEDQVPGPFLVMVLIQFGTMVVDRALYLRKTVLGKVIFQVILVFGIHFWMFFILPGVTERKFSQNLVAQLWYFVKCVYFGLSAYQIRCGYPTRVLGNFLTKSYNYVNLFLFQGFRLVPFLTELRAVMDWVWTDTTLSLSSWICVEDIYAHIFILKCWRESEKRYPQPRGQKKKKVVKYGMGGMIIVLLICIVWFPLLFMSLIKSVAGVINQPLDVSVTITLGGYQPIFTMSAQQSQLKVMDQPKFNKFMKGAMQFLENYEKEDITVAELEGNSNSLWTISPPSKQKMISELMDHNSSFSVVFSWSIQRNMSLGAKAEIATDKLSFPLKNNTRKSIAKMIAGNDMESSTTPVTIERIYPYYVKAPSDSNSKPIKQLLSENNFMNITIILSRDNTTKSNSEWWVLNLTGNRLYNQEAQALELVVFNDKVSPPSLGFLAGYGIMGLYASVVLVIGKFVREFFSGISHSIMFEELPNVDRILKLCTDIFLVRETGELELEEDLYAKLIFLYRSPETMIKWTREKTN", "length": 2797, "header": "tr|A0A5G2QRD6-1|A0A5G2QRD6_PIG Isoform 1 of Piezo type mechanosensitive ion channel component 2 OS=Sus scrofa OX=9823 GN=PIEZO2 PE=3 SV=1 CANONICAL=A0A5G2QRD6-1" }, "isoforms": [ { "isoform_ac": "A0A287AAC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6/entry#A0A287AAC9-1", "sequence": { "sequence": "MLYQLQTIKPENFSVNCSLPNENQTNIPLHQLNKSLLYSAPIDPTEWVGLRKSAPLLVYLRNNLLMLEYYRGRNNLTAPVSKTIFHDITRLHLDDGLVNCAKYFINYFFYKFGLETCFLMSVNVIGQRMDFYAMIHACWLIAVLYRRRRKAIAEIWPKYCCFLACILSFQYLICIGFPPAPCRDYPWRFKGASFNDNIVKWLYFPDFIVRPNPVFLVYDFMLLLCASLQRQIFEDENKAAVRIMAGDNVEICMNLDAASFSQHNPVPDFIHCRSYLDMSKVIIFSYLFWFVLTIIFITGTTRISIFCMGYLVACFYFLLFGGDLLLKPIKSILRYWDWLIAYNVFVITMKNILSIGACGYIEKLVQNSCWLIQAFSLACTVKGYKMPDDDSSCKLPKKSFHELLFPTCRGGYKGVTDPGIEVGQAKN", "length": 427, "header": "tr|A0A287AAC9-1|A0A5G2QRD6_PIG Computationally mapped isoform of Piezo type mechanosensitive ion channel component 2 OS=Sus scrofa OX=9823 GN=PIEZO2 PE=3 SV=2 CANONICAL=A0A5G2QRD6-1" }, "locus": { "chromosome": "6", "start_pos": 97884001, "end_pos": 97873721, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044264.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044264.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040895.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040895.2" } ] } }, { "isoform_ac": "A0A287APZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6/entry#A0A287APZ1-1", "sequence": { "sequence": "MQIGHTGRLLKSLCFISFSFLLLHIIFHITLASLEAQHHTAASYNCSTWEKTFRQIGFESLKGADVGNGIRVFVPDIGMFIASLTIWLVCRNIVQKPVGEEAAQYNPEFENEESAGGEKIDSEEALVYEEDLDEGDGVDGRLEESTKLKLFRRLASVASKLKEFIGNMITTAGKVVVTILLGSSGMMLPSLTSSVYFFVFLGLCTWWSWCRTFDPLLFSCLCVLLAIFTAGHLIGLYLYQFQFFQEAVPPDDYYARLFGIKSVIQIDCSSTWKIIANPDLSWYHHANPILLLVMYYTLATLIRIWLQEPLVQDERTKEEDRALACSPVPITAERRRSLWYATHYPTDERKLLSMTQDDYKPSDGLLVTVNGNPVDYHTIHPSLPLENGPAKADLYSTPQYRWEPPEDSSEKKEEEEEEREEFEEERSHEEKRSVKVHAMVSVFQFIMKQSYICALIAMMAWSITYHSWLTFVLLIWSCTLWMIRNRRKYAMISSPFMVIYGNLLLVLQYIWSFELPEIKKVPGFLEKKEPGELASKILFTITFWLLLRQHLTEQKALQEKEALLSEVKIGSQEDEEKDDDQDVHVDGEAPEKEDEEMTKEEKQELEEEEEEEDDQDVMKVLGNLVVALFIKYWIYVCGGMFFFVSFEGKIVMYKIIYMVLFLFCVALYQVHYEWWRRILKYFWMSVVIYTMLVLIFIYTYQFENFPGLWQNMTGLKKEKLEDLGLKQFTVAELFTRIFIPTSFLLVCILHLHYFHDRFLELTDLKSIPSKEDSTIYRLAHPEGSLPDLAMMNLTTTLEASEAKQLAGPEEEKPGGCLAKAKKGELSRDSEDEEEEEDEEEETSDLRNKWHLVMDRLTVLLLKFLECFHRLQTFLWWVLELHVIKVVSSYIIWVSVKEVSLFNYVFLISWAFALPYAKLRRLASSVCTVWTCVIIVCKMLYQLQTIKPENFSVNCSLPNENQTNIPLHQLNKSLLYSAPIDPTEWVGLRKSAPLLVYLRNNLLMLEYYRGRNNLTAPVSKTIFHDITRLHLDDGLVNCAKYFINYFFYKFGLETCFLMSVNVIGQRMDFYAMIHACWLIAVLYRRRRKAIAEIWPKYCCFLACILSFQYLICIGFPPAPCRDYPWRFKGASFNDNIVKWLYFPDFIVRPNPVFLVYDFMLLLCASLQRQIFEDENKAAVRIMAGDNVEICMNLDAASFSQHNPVPDFIHCRSYLDMSKVIIFSYLFWFVLTIIFITGTTRISIFCMGYLVACFYFLLFGGDLLLKPIKSILRYWDWLIAYNVFVITMKNILSIGACGYIEKLVQNSCWLIQAFSLACTVKGYKMPDDDSSCKLPSGEAGIIWDSICFAFLLLQRRVFMSYYFLHVVADIKASQILASRGAELFQATIVKAVKARIEEEKKSMDQLKRQMDRIKARQQKYKKGKERMLSLTQESGEGQDIQKLSEEDDEITILFCSVVRSGDYYLFETDSEEEEEEEFKKEDEEPPRRSAFQFVYQAWITDPKTALRQRRKEKKRSAREEQKRRRKGSGEGPVEWEDREAEPVKKKSDGPDNIIKRIFNILKFTWVLFLATVDSFTTWLNSISREHIDISTVLRIERCMLTREIKKGNVPTRESIHVYYQNHIMNLSRESGLDTIDDGPGGAAGAQSAHRMDSLDSHDSISSEPTQCTTLYSRQGTTETIEEVEAEQDEEAPTGAQDTESPQDPTEDGDMEAPPSYSKAVSFERLSFDSRDDSAGQTHMAVSPDDSRSDRLEASILPPLTHELTASELLLNKMFRDDELEESEKFYVGQPRFLLLFYAMYNTLVARSEMVCYFVIILNHMVSASVITLVLPILIFLWAMLSVPRPSRRFWMMAIVYTEVAIVVKYFFQFGFFPWNKNVELYKDKPYHPPNIIGVEKKEGYVLYDLIQLLALFFHRSILKCHGLWDEDDIVDSGSDQEDSDGELSVGQGRRASSDSLKSINLAASVESVHVTFPEQPVTIRRKRPSSGSQMSQGSSFSSDRSKRGSTSTRNSSQKGSSVLSIKQKSKRELYMEKLQEHLIKAKAFTIKKALQIYVPVKQFFYNLIHPDYSAVTDVYVLMFLADTVDFVIIVFGFWAFGKHSAAADITSSLSEDQVPGPFLVMVLIQFGTMVVDRALYLRKTVLGKVIFQVILVFGIHFWMFFILPGVTERKFSQNLVAQLWYFVKCVYFGLSAYQIRCGYPTRVLGNFLTKSYNYVNLFLFQGFRLVPFLTELRAVMDWVWTDTTLSLSSWICVEDIYAHIFILKCWRESEKRYPQPRGQKKKKVVKYGMGGMIIVLLICIVWFPLLFMSLIKSVAGVINQPLDVSVTITLGGYQPIFTMSAQQSQLKVMDQPKFNKFMKAFSRDTGAMQFLENYEKEDITVAELEGNSNSLWTISPPSKQKMISELMDHNSSFSVVFSWSIQRNMSLGAKAEIATDKLSFPLKNNTRKSIAKMIAGNDMESSTTPVTIERIYPYYVKAPSDSNSKPIKQLLSENNFMNITIILSRDNTTKSNSEWWVLNLTGNRLYNQEAQALELVVFNDKVSPPSLGFLAGYGIMGLYASVVLVIGKFVREFFSGISHSIMFEELPNVDRILKLCTDIFLVRETGELELEEDLYAKLIFLYRSPETMIKWTREKTN", "length": 2635, "header": "tr|A0A287APZ1-1|A0A5G2QRD6_PIG Computationally mapped isoform of Piezo type mechanosensitive ion channel component 2 OS=Sus scrofa OX=9823 GN=PIEZO2 PE=3 SV=1 CANONICAL=A0A5G2QRD6-1" }, "locus": { "chromosome": "6", "start_pos": 97944409, "end_pos": 97746019, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055219.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055219.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046025.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046025.2" } ] } }, { "isoform_ac": "A0A5G2QRD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6/entry#A0A5G2QRD6-1", "sequence": { "sequence": "MASEVVCGLIFRLLLPICLAVACAFRYNGLSFVYLIYLLLIPLFSEPTKATMQGHTGRLLKSLCFISFSFLLLHIIFHITLASLEAQHHTAASYNCSTWEKTFRQIGFESLKGADVGNGIRVFVPDIGMFIASLTIWLVCRNIVQKPVGEEAAQYNPEFENEESAGGEKIDSEEALVYEEDLDEGDGVDGRLEESTKLKLFRRLASVASKLKEFIGNMITTAGKVVVTILLGSSGMMLPSLTSSVYFFVFLGLCTWWSWCRTFDPLLFSCLCVLLAIFTAGHLIGLYLYQFQFFQEAVPPDDYYARLFGIKSVIQIDCSSTWKIIANPDLSWYHHANPILLLVMYYTLATLIRIWLQEPLVQDERTKEEDRALACSPVPITAERRRSLWYATHYPTDERKLLSMTQDDYKPSDGLLVTVNGNPVDYHTIHPSLPLENGPAKADLYSTPQYRWEPPEDSSEKKEEEEEEREEFEEERSHEEKRSVKVHAMVSVFQFIMKQSYICALIAMMAWSITYHSWLTFVLLIWSCTLWMIRNRRKYAMISSPFMVIYGNLLLVLQYIWSFELPEIKKVPGFLEKKEPGELASKILFTITFWLLLRQHLTEQKALQEKEALLSEVKIGSQEDEEKDDDQDVHVDGEAPEKEDEEMTKEEKQELEEEEEEEDDQDVMKVLGNLVVALFIKYWIYVCGGMFFFVSFEGKIVMYKIIYMVLFLFCVALYQVHYEWWRRILKYFWMSVVIYTMLVLIFIYTYQFENFPGLWQNMTGLKKEKLEDLGLKQFTVAELFTRIFIPTSFLLVCILHLHYFHDRFLELTDLKSIPSKEDSTIYSHAKVNGRVYLIINRWVLQCFLSWLAHPEGSLPDLAMMNLTTTLEASEAKQLAGPEEEKPGGCLAKAKKGELSRDSEDEEEEEDEEEETSVSNESDHLRNKWHLVMDRLTVLLLKFLECFHRLQTFLWWVLELHVIKVVSSYIIWVSVKEVSLFNYVFLISWAFALPYAKLRRLASSVCTVWTCVIIVCKMLYQLQTIKPENFSVNCSLPNENQTNIPLHQLNKSLLYSAPIDPTEWVGLRKSAPLLVYLRNNLLMLEYYRGRNNLTAPVSKTIFHDITRLHLDDGLVNCAKYFINYFFYKFGLETCFLMSVNVIGQRMDFYAMIHACWLIAVLYRRRRKAIAEIWPKYCCFLACILSFQYLICIGFPPAPCRDYPWRFKGASFNDNIVKWLYFPDFIVRPNPVFLVYDFMLLLCASLQRQIFEDENKAAVRIMAGDNVEICMNLDAASFSQHNPVPDFIHCRSYLDMSKVIIFSYLFWFVLTIIFITGTTRISIFCMGYLVACFYFLLFGGDLLLKPIKSILRYWDWLIAYNVFVITMKNILSIGACGYIEKLVQNSCWLIQAFSLACTVKGYKMPDDDSSCKLPSGEAGIIWDSICFAFLLLQRRVFMSYYFLHVVADIKASQILASRGAELFQATIVKAVKARIEEEKKSMDQLKRQMDRIKARQQKYKKGKERMLSLTQESGEGQDIQKLSEEDDEITILFCSVVRSGDYYLFETDSEEEEEEEFKKEDEEPPRRSAFQRAIGKFASAILALPKSVIKLPKTILQYLIRAAKFVYQAWITDPKTALRQRRKEKKRSAREEQKRRRKGSGEGPVEWEDREAEPVKKKSDGPDNIIKRIFNILKFTWVLFLATVDSFTTWLNSISREHIDISTVLRIERCMLTREIKKGNVPTRESIHVYYQNHIMNLSRESGLDTIDDGPGGAAGAQSAHRMDSLDSHDSISSCYTEATMLFSRQSTLDDLDGPETVPKTSERARPGLRKMLSMDVSSSSAESASLASSEPTQCTTLYSRQGTTETIEEVEAEQDEEAPTGAQDTESPQDPTEDGDMEAPPSYSKAVSFERLSFDSRDDSAGQTHMAVSPDDSRSDRLEASILPPLTHELTASELLLNKMFRDDELEESEKFYVGQPRFLLLFYAMYNTLVARSEMVCYFVIILNHMVSASVITLVLPILIFLWAMLSVPRPSRRFWMMAIVYTEVAIVVKYFFQFGFFPWNKNVELYKDKPYHPPNIIGVEKKEGYVLYDLIQLLALFFHRSILKCHGLWDEDDIVDSGSDQEDSDGELSVGQGRRASSDSLKSINLAASVESVHVTFPEQPVTIRRKRPSSGSQMSQGSSFSSDRSKRGSTSTRNSSQKGSSVLSIKQKSKRELYMEKLQEHLIKAKAFTIKKALQIYVPVKQFFYNLIHPDYSAVTDVYVLMFLADTVDFVIIVFGFWAFGKHSAAADITSSLSEDQVPGPFLVMVLIQFGTMVVDRALYLRKTVLGKVIFQVILVFGIHFWMFFILPGVTERKFSQNLVAQLWYFVKCVYFGLSAYQIRCGYPTRVLGNFLTKSYNYVNLFLFQGFRLVPFLTELRAVMDWVWTDTTLSLSSWICVEDIYAHIFILKCWRESEKRYPQPRGQKKKKVVKYGMGGMIIVLLICIVWFPLLFMSLIKSVAGVINQPLDVSVTITLGGYQPIFTMSAQQSQLKVMDQPKFNKFMKGAMQFLENYEKEDITVAELEGNSNSLWTISPPSKQKMISELMDHNSSFSVVFSWSIQRNMSLGAKAEIATDKLSFPLKNNTRKSIAKMIAGNDMESSTTPVTIERIYPYYVKAPSDSNSKPIKQLLSENNFMNITIILSRDNTTKSNSEWWVLNLTGNRLYNQEAQALELVVFNDKVSPPSLGFLAGYGIMGLYASVVLVIGKFVREFFSGISHSIMFEELPNVDRILKLCTDIFLVRETGELELEEDLYAKLIFLYRSPETMIKWTREKTN", "length": 2797, "header": "tr|A0A5G2QRD6-1|A0A5G2QRD6_PIG Isoform 1 of Piezo type mechanosensitive ion channel component 2 OS=Sus scrofa OX=9823 GN=PIEZO2 PE=3 SV=1 CANONICAL=A0A5G2QRD6-1" }, "locus": { "chromosome": "6", "start_pos": 97944409, "end_pos": 97644177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075210.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075210.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067483.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067483.1" } ] } }, { "isoform_ac": "A0A5G2R4B6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6/entry#A0A5G2R4B6-1", "sequence": { "sequence": "MASEVVCGLIFRLLLPICLAVACAFRYNGLSFVYLIYLLLIPLFSEPTKATMQGHTGRLLKSLCFISFSFLLLHIIFHITLASLEAQHHTAASYNCSTWEKTFRQIGFESLKGADVGNGIRVFVPDIGMFIASLTIWLVCRNIVQKPVGEEAAQYNPEFENEESAGGEKIDSEEALVYEEDLDEGDGVDGRLEESTKLKLFRRLASVASKLKEFIGNMITTAGKVVVTILLGSSGMMLPSLTSSVYFFVFLGLCTWWSWCRTFDPLLFSCLCVLLAIFTAGHLIGLYLYQFQFFQEAVPPDDYYARLFGIKSVIQIDCSSTWKIIANPDLSWYHHANPILLLVMYYTLATLIRIWLQEPLVQDERTKEEDRALACSPVPITAERRRSLWYATHYPTDERKLLSMTQDDYKPSDGLLVTVNGNPVDYHTIHPSLPLENGPAKADLYSTPQYRWEPPEDSSEKKEEEEEEREEFEEERSHEEKRSVKVHAMVSVFQFIMKQSYICALIAMMAWSITYHSWLTFVLLIWSCTLWMIRNRRKYAMISSPFMVIYGNLLLVLQYIWSFELPEIKKVPGFLEKKEPGELASKILFTITFWLLLRQHLTEQKALQEKEALLSEVKIGSQEDEEKDDDQDVHVDGEAPEKEDEEMTKEEKQELEEEEEEEDDQDVMKVLGNLVVALFIKYWIYVCGGMFFFVSFEGKIVMYKIIYMVLFLFCVALYQVHYEWWRRILKYFWMSVVIYTMLVLIFIYTYQFENFPGLWQNMTGLKKEKLEDLGLKQFTVAELFTRIFIPTSFLLVCILHLHYFHDRFLELTDLKSIPSKEDSTIYSHAKVNGRVYLIINRLAHPEGSLPDLAMMNLTTTLEASEAKQLAGPEEEKPGGCLAKAKKGELSRDSEDEEEEEDEEEETSVSNESDHLRNKWHLVMDRLTVLLLKFLECFHRLQTFLWWVLELHVIKVVSSYIIWVSVKEVSLFNYVFLISWAFALPYAKLRRLASSVCTVWTCVIIVCKMLYQLQTIKPENFSVNCSLPNENQTNIPLHQLNKSLLYSAPIDPTEWVGLRKSAPLLVYLRNNLLMLEYYRGRNNLTAPVSKTIFHDITRLHLDDGLVNCAKYFINYFFYKFGLETCFLMSVNVIGQRMDFYAMIHACWLIAVLYRRRRKAIAEIWPKYCCFLACILSFQYLICIGFPPAPCRDYPWRFKGASFNDNIVKWLYFPDFIVRPNPVFLVYDFMLLLCASLQRQIFEDENKAAVRIMAGDNVEICMNLDAASFSQHNPVPDFIHCRSYLDMSKVIIFSYLFWFVLTIIFITGTTRISIFCMGYLVACFYFLLFGGDLLLKPIKSILRYWDWLIAYNVFVITMKNILSIGACGYIEKLVQNSCWLIQAFSLACTVKGYKMPDDDSSCKLPSGEAGIIWDSICFAFLLLQRRVFMSYYFLHVVADIKASQILASRGAELFQATIVKAVKARIEEEKKSMDQLKRQMDRIKARQQKYKKGKERMLSLTQESGEGQDIQKLSEEDDEITILFCSVVRSGDYYLFETDSEEEEEEEFKKEDEEPPRRSAFQFVYQAWITDPKTALRQRRKEKKRSAREEQKRRRKGSGEGPVEWEDREAEPVKKKSDGPDNIIKRIFNILKFTWVLFLATVDSFTTWLNSISREHIDISTVLRIERCMLTREIKKGNVPTRESIHVYYQNHIMNLSRESGLDTIDDGPGGAAGAQSAHRMDSLDSHDSISSCYTEATMLFSRQSTLDDLDGPETVPKTSERARPGLRKMLSMDVSSSSAESASLASSEPTQCTTLYSRQGTTETIEEVEAEQDEEAPTGAQDTESPQDPTEDGDMEAPPSYSKAVSFERLSFDSRDDSAGQTHMAVSPDDSRSDRLEASILPPLTHELTASELLLNKMFRDDELEESEKFYVGQPRFLLLFYAMYNTLVARSEMVCYFVIILNHMVSASVITLVLPILIFLWAMLSVPRPSRRFWMMAIVYTEVAIVVKYFFQFGFFPWNKNVELYKDKPYHPPNIIGVEKKEGYVLYDLIQLLALFFHRSILKCHGLWDEDDIVDSGSDQEDSDGELSVGQGRRASSDSLKSINLAASVESVHVTFPEQPVTIRRKRPSSGSQMSQGSSFSSDRSKRGSTSTRNSSQKGSSVLSIKQKSKRELYMEKLQEHLIKAKAFTIKKALQIYVPVKQFFYNLIHPDYSAVTDVYVLMFLADTVDFVIIVFGFWAFGKHSAAADITSSLSEDQVPGPFLVMVLIQFGTMVVDRALYLRKTVLGKVIFQVILVFGIHFWMFFILPGVTERKFSQNLVAQLWYFVKCVYFGLSAYQIRCGYPTRVLGNFLTKSYNYVNLFLFQGFRLVPFLTELRAVMDWVWTDTTLSLSSWICVEDIYAHIFILKCWRESEKRYPQPRGQKKKKVVKYGMGGMIIVLLICIVWFPLLFMSLIKSVAGVINQPLDVSVTITLGGYQPIFTMSAQQSQLKVMDQPKFNKFMKGAMQFLENYEKEDITVAELEGNSNSLWTISPPSKQKMISELMDHNSSFSVVFSWSIQRNMSLGAKAEIATDKLSFPLKNNTRKSIAKMIAGNDMESSTTPVTIERIYPYYVKAPSDSNSKPIKQLLSENNFMNITIILSRDNTTKSNSEWWVLNLTGNRLYNQEAQALELVVFNDKVSPPSLGFLAGYGIMGLYASVVLVIGKFVREFFSGISHSIMFEELPNVDRILKLCTDIFLVRETGELELEEDLYAKLIFLYRSPETMIKWTREKTN", "length": 2755, "header": "tr|A0A5G2R4B6-1|A0A5G2R4B6_PIG Computationally mapped isoform of Piezo type mechanosensitive ion channel component 2 OS=Sus scrofa OX=9823 GN=PIEZO2 PE=3 SV=1 CANONICAL=A0A5G2QRD6-1" }, "locus": { "chromosome": "6", "start_pos": 97944409, "end_pos": 97644177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085005.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085005.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071178.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071178.1" } ] } }, { "isoform_ac": "A0A5G2R8A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6/entry#A0A5G2R8A7-1", "sequence": { "sequence": "MASEVVCGLIFRLLLPICLAVACAFRYNGLSFVYLIYLLLIPLFSEPTKATMQGHTGRLLKSLCFISFSFLLLHIIFHITLASLEAQHHTAASYNCSTWEKTFRQIGFESLKGADVGNGIRVFVPDIGMFIASLTIWLVCRNIVQKPVGEEAAQYNPEFENEESAGGEKIDSEEALVYEEDLDEGDGVDGRLEESTKLKLFRRLASVASKLKEFIGNMITTAGKVVVTILLGSSGMMLPSLTSSVYFFVFLGLCTWWSWCRTFDPLLFSCLCVLLAIFTAGHLIGLYLYQFQFFQEAVPPDDYYARLFGIKSVIQIDCSSTWKIIANPDLSWYHHANPILLLVMYYTLATLIRIWLQEPLVQDERTKEEDRALACSPVPITAERRRSLWYATHYPTDERKLLSMTQDDYKPSDGLLVTVNGNPVDYHTIHPSLPLENGPAKADLYSTPQYRWEPPEDSSEKKEEEEEEREEFEEERSHEEKRSVKVHAMVSVFQFIMKQSYICALIAMMAWSITYHSWLTFVLLIWSCTLWMIRNRRKYAMISSPFMVIYGNLLLVLQYIWSFELPEIKKVPGFLEKKEPGELASKILFTITFWLLLRQHLTEQKALQEKEALLSEVKIGSQEDEEKDDDQDVHVDGEAPEKEDEEMTKEEKQELEEEEEEEDDQDVMKVLGNLVVALFIKYWIYVCGGMFFFVSFEGKIVMYKIIYMVLFLFCVALYQVHYEWWRRILKYFWMSVVIYTMLVLIFIYTYQFENFPGLWQNMTGLKKEKLEDLGLKQFTVAELFTRIFIPTSFLLVCILHLHYFHDRFLELTDLKSIPSKEDSTIYSHAKVNGRVYLIINRWVLQCFLSWLAHPEGSLPDLAMMNLTTTLEASEAKQLAGPEEEKPGGCLAKAKKGELSRDSEDEEEEEDEEEETSDLRNKWHLVMDRLTVLLLKFLECFHRLQTFLWWVLELHVIKVVSSYIIWVSVKEVSLFNYVFLISWAFALPYAKLRRLASSVCTVWTCVIIVCKMLYQLQTIKPENFSVNCSLPNENQTNIPLHQLNKSLLYSAPIDPTEWVGLRKSAPLLVYLRNNLLMLEYYRGRNNLTAPVSKTIFHDITRLHLDDGLVNCAKYFINYFFYKFGLETCFLMSVNVIGQRMDFYAMIHACWLIAVLYRRRRKAIAEIWPKYCCFLACILSFQYLICIGFPPAPCRDYPWRFKGASFNDNIVKWLYFPDFIVRPNPVFLVYDFMLLLCASLQRQIFEDENKAAVRIMAGDNVEICMNLDAASFSQHNPVPDFIHCRSYLDMSKVIIFSYLFWFVLTIIFITGTTRISIFCMGYLVACFYFLLFGGDLLLKPIKSILRYWDWLIAYNVFVITMKNILSIGACGYIEKLVQNSCWLIQAFSLACTVKGYKMPDDDSSCKLPSGEAGIIWDSICFAFLLLQRRVFMSYYFLHVVADIKASQILASRGAELFQATIVKAVKARIEEEKKSMDQLKRQMDRIKARQQKYKKGKERMLSLTQESGEGQDIQKLSEEDDEITILFCSVVRSGDYYLFETDSEEEEEEEFKKEDEEPPRRSAFQRAIGKFASAILALPKSVIKLPKTILQYLIRAAKFVYQAWITDPKTALRQRRKEKKRSAREEQKRRRKGSGEGPVEWEDREAEPVKKKSDGPDNIIKRIFNILKFTWVLFLATVDSFTTWLNSISREHIDISTVLRIERCMLTREIKKGNVPTRESIHVYYQNHIMNLSRESGLDTIDDGPGGAAGAQSAHRMDSLDSHDSISSCYTEATMLFSRQSTLDDLDGPETVPKTSERARPGLRKMLSMDVSSSSAESASLASSEPTQCTTLYSRQGTTETIEEVEAEQDEEAPTGAQDTESPQDPTEDGDMEAPPSYSKAVSFERLSFDSRDDSAGQTHMAVSPDDSRSDRLEASILPPLTHELTASELLLNKMFRDDELEESEKFYVGQPRFLLLFYAMYNTLVARSEMVCYFVIILNHMVSASVITLVLPILIFLWAMLSVPRPSRRFWMMAIVYTEVAIVVKYFFQFGFFPWNKNVELYKDKPYHPPNIIGVEKKEGYVLYDLIQLLALFFHRSILKCHGLWDEDDIVDSGSDQEDSDGELSVGQGRRASSDSLKSINLAASVESVHVTFPEQPVTIRRKRPSSGSQMSQGSSFSSDRSKRGSTSTRNSSQKGSSVLSIKQKSKRELYMEKLQEHLIKAKAFTIKKALQIYVPVKQFFYNLIHPDYSAVTDVYVLMFLADTVDFVIIVFGFWAFGKHSAAADITSSLSEDQVPGPFLVMVLIQFGTMVVDRALYLRKTVLGKVIFQVILVFGIHFWMFFILPGVTERKFSQNLVAQLWYFVKCVYFGLSAYQIRCGYPTRVLGNFLTKSYNYVNLFLFQGFRLVPFLTELRAVMDWVWTDTTLSLSSWICVEDIYAHIFILKCWRESEKRYPQPRGQKKKKVVKYGMGGMIIVLLICIVWFPLLFMSLIKSVAGVINQPLDVSVTITLGGYQPIFTMSAQQSQLKVMDQPKFNKFMKAFSRDTGAMQFLENYEKEDITVAELEGNSNSLWTISPPSKQKMISELMDHNSSFSVVFSWSIQRNMSLGAKAEIATDKLSFPLKNNTRKSIAKMIAGNDMESSTTPVTIERIYPYYVKAPSDSNSKPIKQLLSENNFMNITIILSRDNTTKSNSEWWVLNLTGNRLYNQEAQALELVVFNDKVSPPSLGFLAGYGIMGLYASVVLVIGKFVREFFSGISHSIMFEELPNVDRILKLCTDIFLVRETGELELEEDLYAKLIFLYRSPETMIKWTREKTN", "length": 2797, "header": "tr|A0A5G2R8A7-1|A0A5G2R8A7_PIG Computationally mapped isoform of Piezo type mechanosensitive ion channel component 2 OS=Sus scrofa OX=9823 GN=PIEZO2 PE=3 SV=1 CANONICAL=A0A5G2QRD6-1" }, "locus": { "chromosome": "6", "start_pos": 97944409, "end_pos": 97644177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083168.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083168.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072553.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072553.1" } ] } }, { "isoform_ac": "A0A8W4F7M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6/entry#A0A8W4F7M1-1", "sequence": { "sequence": "MASEVVCGLIFRLLLPICLAVACAFRYNGLSFVYLIYLLLIPLFSEPTKATMQGHTGRLLKSLCFISFSFLLLHIIFHITLASLEAQHHTAASYNCSTWEKTFRQIGFESLKGADVGNGIRVFVPDIGMFIASLTIWLVCRNIVQKPVGEEAAQYNPEFENEESAGGEKIDSEEALVYEEDLDEGDGVDGRLEESTKLKLFRRLASVASKLKEFIGNMITTAGKVVVTILLGSSGMMLPSLTSSVYFFVFLGLCTWWSWCRTFDPLLFSCLCVLLAIFTAGHLIGLYLYQFQFFQEAVPPDDYYARLFGIKSVIQIDCSSTWKIIANPDLSWYHHANPILLLVMYYTLATLIRIWLQEPLVQDERTKEEDRALACSPVPITAERRRSLWYATHYPTDERKGLLVTVNGNPVDYHTIHPSLPLENGPAKADLYSTPQYRWEPPEDSSEKKEEEEEEREEFEEERSHEEKRSVKVHAMVSVFQFIMKQSYICALIAMMAWSITYHSWLTFVLLIWSCTLWMIRNRRKYAMISSPFMVIYGNLLLVLQYIWSFELPEIKKVPGFLEKKEPGELASKILFTITFWLLLRQHLTEQKALQEKEALLSEVKIGSQEDEEKDDDQDVHVDGEAPEKEDEEMTKEEKQELEEEEEEEDDQDVMKVLGNLVVALFIKYWIYVCGGMFFFVSFEGKIVMYKIIYMVLFLFCVALYQVHYEWWRRILKYFWMSVVIYTMLVLIFIYTYQFENFPGLWQNMTGLKKEKLEDLGLKQFTVAELFTRIFIPTSFLLVCILHLHYFHDRFLELTDLKSIPSKEDSTIYSHAKVNGRVYLIINRLAHPEGSLPDLAMMNLTTTLEASEAKQLAGPEEEKPGGCLAKAKKGELSRDSEDEEEEEDEEEETSDLRNKWHLVMDRLTVLLLKFLECFHRLQTFLWWVLELHVIKVVSSYIIWVSVKEVSLFNYVFLISWAFALPYAKLRRLASSVCTVWTCVIIVCKMLYQLQTIKPENFSVNCSLPNENQTNIPLHQLNKSLLYSAPIDPTEWVGLRKSAPLLVYLRNNLLMLEYYRGRNNLTAPVSKTIFHDITRLHLDDGLVNCAKYFINYFFYKFGLETCFLMSVNVIGQRMDFYAMIHACWLIAVLYRRRRKAIAEIWPKYCCFLACILSFQYLICIGFPPAPCRDYPWRFKGASFNDNIVKWLYFPDFIVRPNPVFLVYDFMLLLCASLQRQIFEDENKAAVRIMAGDNVEICMNLDAASFSQHNPVPDFIHCRSYLDMSKVIIFSYLFWFVLTIIFITGTTRISIFCMGYLVACFYFLLFGGDLLLKPIKSILRYWDWLIAYNVFVITMKNILSIGACGYIEKLVQNSCWLIQAFSLACTVKGYKMPDDDSSCKLPSGEAGIIWDSICFAFLLLQRRVFMSYYFLHVVADIKASQILASRGAELFQATIVKAVKARIEEEKKSMDQLKRQMDRIKARQQKYKKGKERMLSLTQESGEGQDIQKLSEEDDEITILFCSVVRSGDYYLFETDSEEEEEEEFKKEDEEPPRRSAFQRAIGKFASAILALPKSVIKLPKTILQYLIRAAKFVYQAWITDPKTALRQRRKEKKRSAREEQKRRRKGSGEGPVEWEDREAEPVKKKSDGPDNIIKRIFNILKFTWVLFLATVDSFTTWLNSISREHIDISTVLRIERCMLTREIKKGNVPTRESIHVYYQNHIMNLSRESGLDTIDDGPGGAAGAQSAHRMDSLDSHDSISSCYTEATMLFSRQSTLDDLDGPETVPKTSERARPGLRKMLSMDVSSSSAESASLASSEPTQCTTLYSRQGTTETIEEVEAEQDEEAPTGAQDTESPQDPTEDGDMEAPPSYSKAVSFERLSFDSRDDSAGQTHMAVSPDDSRSDRLEASILPPLTHELTASELLLNKMFRDDELEESEKFYVGQPRFLLLFYAMYNTLVARSEMVCYFVIILNHMVSASVITLVLPILIFLWAMLSVPRPSRRFWMMAIVYTEVAIVVKYFFQFGFFPWNKNVELYKDKPYHPPNIIGVEKKEGYVLYDLIQLLALFFHRSILKCHGLWDEDDIVDSGSDQEDSDGELSVGQGRRASSDSLKSINLAASVESVHVTFPEQPVTIRRKRPSSGSQMSQGSSFSSDRSKRGSTSTRNSSQKGSSVLSIKQKSKRELYMEKLQEHLIKAKAFTIKKALQIYVPVKQFFYNLIHPDYSAVTDVYVLMFLADTVDFVIIVFGFWAFGKHSAAADITSSLSEDQVPGPFLVMVLIQFGTMVVDRALYLRKTVLGKVIFQVILVFGIHFWMFFILPGVTERKFSQNLVAQLWYFVKCVYFGLSAYQIRCGYPTRVLGNFLTKSYNYVNLFLFQGFRLVPFLTELRAVMDWVWTDTTLSLSSWICVEDIYAHIFILKCWRESEKRYPQPRGQKKKKVVKYGMGGMIIVLLICIVWFPLLFMSLIKSVAGVINQPLDVSVTITLGGYQPIFTMSAQQSQLKVMDQPKFNKFMKAFSRDTGAMQFLENYEKEDITVAELEGNSNSLWTISPPSKQKMISELMDHNSSFSVVFSWSIQRNMSLGAKAEIATDKLSFPLKNNTRKSIAKMIAGNDMESSTTPVTIERIYPYYVKAPSDSNSKPIKQLLSENNFMNITIILSRDNTTKSNSEWWVLNLTGNRLYNQEAQALELVVFNDKVSPPSLGFLAGYGIMGLYASVVLVIGKFVREFFSGISHSIMFEELPNVDRILKLCTDIFLVRETGELELEEDLYAKLIFLYRSPETMIKWTREKTN", "length": 2775, "header": "tr|A0A8W4F7M1-1|A0A5G2QRD6_PIG Computationally mapped isoform of Piezo type mechanosensitive ion channel component 2 OS=Sus scrofa OX=9823 GN=PIEZO2 PE=3 SV=1 CANONICAL=A0A5G2QRD6-1" }, "locus": { "chromosome": "6", "start_pos": 97944409, "end_pos": 97644177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099493.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099493.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075308.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075308.1" } ] } }, { "isoform_ac": "A0A8W4F8P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6/entry#A0A8W4F8P1-1", "sequence": { "sequence": "MASEVVCGLIFRLLLPICLAVACAFRYNGLSFVYLIYLLLIPLFSEPTKATMQGHTGRLLKSLCFISFSFLLLHIIFHITLASLEAQHHTAASYNCSTWEKTFRQIGFESLKGADVGNGIRVFVPDIGMFIASLTIWLVCRNIVQKPVGEEAAQYNPEFENEESAGGEKIDSEEALVYEEDLDEGDGVDGRLEESTKLKLFRRLASVASKLKEFIGNMITTAGKVVVTILLGSSGMMLPSLTSSVYFFVFLGLCTWWSWCRTFDPLLFSCLCVLLAIFTAGHLIGLYLYQFQFFQEAVPPDDYYARLFGIKSVIQIDCSSTWKIIANPDLSWYHHANPILLLVMYYTLATLIRIWLQEPLVQDERTKEEDRALACSPVPITAERRRSLWYATHYPTDERKLLSMTQDDYKPSDGLLVTVNGNPVDYHTIHPSLPLENGPAKADLYSTPQYRWEPPEDSSEKKEEEEEEREEFEEERSHEEKRSVKVHAMVSVFQFIMKQSYICALIAMMAWSITYHSWLTFVLLIWSCTLWMIRNRRKYAMISSPFMVIYGNLLLVLQYIWSFELPEIKKVPGFLEKKEPGELASKILFTITFWLLLRQHLTEQKALQEKEALLSEVKIGSQEDEEKDDDQDVHVDGEAPEKEDEEMTKEEKQELEEEEEEEDDQDVMKVLGNLVVALFIKYWIYVCGGMFFFVSFEGKIVMYKIIYMVLFLFCVALYQVHYEWWRRILKYFWMSVVIYTMLVLIFIYTYQFENFPGLWQNMTGLKKEKLEDLGLKQFTVAELFTRIFIPTSFLLVCILHLHYFHDRFLELTDLKSIPSKEDSACFLQPERQLAHPEGSLPDLAMMNLTTTLEASEAKQLAGPEEEKPGGCLAKAKKGELSRDSEDEEEEEDEEEETSDLRNKWHLVMDRLTVLLLKFLECFHRLQTFLWWVLELHVIKVVSSYIIWVSVKEVSLFNYVFLISWAFALPYAKLRRLASSVCTVWTCVIIVCKMLYQLQTIKPENFSVNCSLPNENQTNIPLHQLNKSLLYSAPIDPTEWVGLRKSAPLLVYLRNNLLMLEYYRGRNNLTAPVSKTIFHDITRLHLDDGLVNCAKYFINYFFYKFGLETCFLMSVNVIGQRMDFYAMIHACWLIAVLYRRRRKAIAEIWPKYCCFLACILSFQYLICIGFPPAPCRDYPWRFKGASFNDNIVKWLYFPDFIVRPNPVFLVYDFMLLLCASLQRQIFEDENKAAVRIMAGDNVEICMNLDAASFSQHNPVPDFIHCRSYLDMSKVIIFSYLFWFVLTIIFITGTTRISIFCMGYLVACFYFLLFGGDLLLKPIKSILRYWDWLIAYNVFVITMKNILSIGACGYIEKLVQNSCWLIQAFSLACTVKGYKMPDDDSSCKLPSGEAGIIWDSICFAFLLLQRRVFMSYYFLHVVADIKASQILASRGAELFQATIVKAVKARIEEEKKSMDQLKRQMDRIKARQQKYKKGKERMLSLTQESGEGQDIQKLSEEDDEITILFCSVVRSGDYYLFETDSEEEEEEEFKKEDEEPPRRSAFQRAIGKFASAILALPKSVIKLPKTILQYLIRAAKFVYQAWITDPKTALRQRRKEKKRSAREEQKRRRKGSGEGPVEWEDREAEPVKKKSDGPDNIIKRIFNILKFTWVLFLATVDSFTTWLNSISREHIDISTVLRIERCMLTREIKKGNVPTRESIHVYYQNHIMNLSRESGLDTIDDGPGGAAGAQSAHRMDSLDSHDSISSCYTEATMLFSRQSTLDDLDGPETVPKTSERARPGLRKMLSMDVSSSSAESASLASSEPTQCTTLYSRQGTTETIEEVEAEQDEEAPTGAQDTESPQDPTEDGDMEAPPSYSKAVSFERLSFDSRDDSAGQTHMAVSPDDSRSDRLEASILPPLTHELTASELLLNKMFRDDELEESEKFYVGQPRFLLLFYAMYNTLVARSEMVCYFVIILNHMVSASVITLVLPILIFLWAMLSVPRPSRRFWMMAIVYTEVAIVVKYFFQFGFFPWNKNVELYKDKPYHPPNIIGVEKKEGYVLYDLIQLLALFFHRSILKCHGLWDEDDIVDSGSDQEDSDGELSVGQGRRASSDSLKSINLAASVESVHVTFPEQPVTIRRKRPSSGSQMSQGSSFSSDRSKRGSTSTRNSSQKGSSVLSIKQKSKRELYMEKLQEHLIKAKAFTIKKALQIYVPVKQFFYNLIHPDYSAVTDVYVLMFLADTVDFVIIVFGFWAFGKHSAAADITSSLSEDQVPGPFLVMVLIQFGTMVVDRALYLRKTVLGKVIFQVILVFGIHFWMFFILPGVTERKFSQNLVAQLWYFVKCVYFGLSAYQIRCGYPTRVLGNFLTKSYNYVNLFLFQGFRLVPFLTELRAVMDWVWTDTTLSLSSWICVEDIYAHIFILKCWRESEKRYPQPRGQKKKKVVKYGMGGMIIVLLICIVWFPLLFMSLIKSVAGVINQPLDVSVTITLGGYQPIFTMSAQQSQLKVMDQPKFNKFMKAFSRDTGAMQFLENYEKEDITVAELEGNSNSFELMDHNSSFSVVFSWSIQRNMSLGAKAEIATDKLSFPLKNNTRKSIAKMIAGNDMESSTTPVTIERIYPYYVKAPSDSNSKPIKQLLSENNFMNITIILSRDNTTKSNSEWWVLNLTGNRLYNQEAQALELVVFNDKVSPPSLGFLAGYGIMGLYASVVLVIGKFVREFFSGISHSIMFEELPNVDRILKLCTDIFLVRETGELELEEDLYAKLIFLYRSPETMIKWTREKTN", "length": 2766, "header": "tr|A0A8W4F8P1-1|A0A5G2QRD6_PIG Computationally mapped isoform of Piezo type mechanosensitive ion channel component 2 OS=Sus scrofa OX=9823 GN=PIEZO2 PE=3 SV=1 CANONICAL=A0A5G2QRD6-1" }, "locus": { "chromosome": "6", "start_pos": 97944409, "end_pos": 97644177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101365.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101365.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075747.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075747.1" } ] } }, { "isoform_ac": "A0A8W4FHQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6/entry#A0A8W4FHQ1-1", "sequence": { "sequence": "MSVNVIGQRMDFYAMIHACWLIAVLYRRRRKAIAEIWPKYCCFLACILSFQYLICIGFPPAPCRDYPWRFKGASFNDNIVKWLYFPDFIVRPNPVFLVYDFMLLLCASLQRQIFEDENKAAVRIMAGDNVEICMNLDAASFSQHNPVPDFIHCRSYLDMSKVIIFSYLFWFVLTIIFITGTTRISIFCMGYLVACFYFLLFGGDLLLKPIKSILRYWDWLIAYNVFVITMKNILSIGACGYIEKLVQNSCWLIQAFSLACTVKGYKMPDDDSSCKLPSGEAGIIWDSICFAFLLLQRRVFMSYYFLHVVADIKASQILASRGAELFQATIVKAVKARIEEEKKSMDQLKRQMDRIKARQQKYKKGKERMLSLTQESGEGQDIQKLSEEDDEREADKQKTKGKKKQWWRPWVDHASMVRSGDYYLFETDSEEEEEEEFKKEDEEPPRRSAFQFVYQAWITDPKTALRQRRKEKKRSAREEQKRRRKGSGEGPVEWEDREAEPVKKKSDGPDNIIKRIFNILKFTWVLFLATVDSFTTWLNSISREHIDISTVLRIERCMLTREIKKGNVPTRESIHVYYQNHIMNLSRESGLDTIDDGPGGAAGAQSAHRMDSLDSHDSISSEPTQCTTLYSRQGTTETIEEVEAEQDEEAPTGAQDTESPQDPTEDGDMEAPPSYSKAVSFERLSFDSRDDSAGQTHMAVSPDDSRSDRLEASILPPLTHELTASELLLNKMFRDDELEESEKFYVGQPRFLLLFYAMYNTLVARSEMVCYFVIILNHMVSASVITLVLPILIFLWAMLSVPRPSRRFWMMAIVYTEVAIVVKYFFQFGFFPWNKNVELYKDKPYHPPNIIGVEKKEGYVLYDLIQLLALFFHRSILKCHGLWDEDDIVDSGSDQEDSDGELSVGQGRRASSDSLKSINLAASVESVHVTFPEQPVTIRRKRPSSGSQMSQGSSFSSDRSKRGSTSTRNSSQKGSSVLSIKQKSKRELYMEKLQEHLIKAKAFTIKKALQIYVPVKQFFYNLIHPDYSAVTDVYVLMFLADTVDFVIIVFGFWAFGKHSAAADITSSLSEDQVPGPFLVMVLIQFGTMVVDRALYLRKTVLGKVIFQVILVFGIHFWMFFILPGVTERKFSQNLVAQLWYFVKCVYFGLSAYQIRCGYPTRVLGNFLTKSYNYVNLFLFQGFRLVPFLTELRAVMDWVWTDTTLSLSSWICVEDIYAHIFILKCWRESEKRYPQPRGQKKKKVVKYGMGGMIIVLLICIVWFPLLFMSLIKSVAGVINQPLDVSVTITLGGYQPIFTMSAQQSQLKVMDQPKFNKFMKGAMQFLENYEKEDITVAELEGNSNSLWTISPPSKQKMISELMDHNSSFSVVFSWSIQRNMSLGAKAEIATDKLSFPLKNNTRKSIAKMIAGNDMESSTTPVTIERIYPYYVKAPSDSNSKPIKQLLSENNFMNITIILSRDNTTKSNSEWWVLNLTGNRLYNQEAQALELVVFNDKVSPPSLGFLAGYGIMGLYASVVLVIGKFVREFFSGISHSIMFEELPNVDRILKLCTDIFLVRETGELELEEDLYAKLIFLYRSPETMIKWTREKTN", "length": 1590, "header": "tr|A0A8W4FHQ1-1|A0A5G2QRD6_PIG Computationally mapped isoform of Piezo type mechanosensitive ion channel component 2 OS=Sus scrofa OX=9823 GN=PIEZO2 PE=3 SV=1 CANONICAL=A0A5G2QRD6-1" }, "locus": { "chromosome": "6", "start_pos": 97944409, "end_pos": 97876343, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106113.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106113.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078972.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078972.1" } ] } }, { "isoform_ac": "I3L7W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6/entry#I3L7W3-1", "sequence": { "sequence": "MASEVVCGLIFRLLLPICLAVACAFRYNGLSFVYLIYLLLIPLFSEPTKATMQGHTGRLLKSLCFISFSFLLLHIIFHITLASLEAQHHTAASYNCSTWEKTFRQIGFESLKGADVGNGIRVFVPDIGMFIASLTIWLVCRNIVQKPVGEEAAQYNPEFENEESAGGEKIDSEEALVYEEDLDEGDGVDGRLEESTKLKLFRRLASVASKLKEFIGNMITTAGKVVVTILLGSSGMMLPSLTSSVYFFVFLGLCTWWSWCRTFDPLLFSCLCVLLAIFTAGHLIGLYLYQFQFFQEAVPPDDYYARLFGIKSVIQIDCSSTWKIIANPDLSWYHHANPILLLVMYYTLATLIRIWLQEPLVQDERTKEEDRALACSPVPITAERRRSLWYATHYPTDERKLLSMTQDDYKPSDGLLVTVNGNPVDYHTIHPSLPLENGPAKADLYSTPQYRWEPPEDSSEKKEEEEEEREEFEEERSHEEKRSVKVHAMVSVFQFIMKQSYICALIAMMAWSITYHSWLTFVLLIWSCTLWMIRNRRKYAMISSPFMVIYGNLLLVLQYIWSFELPEIKKVPGFLEKKEPGELASKILFTITFWLLLRQHLTEQKALQEKEALLSEVKIGSQEDEEKDDDQDVHVDGEAPEKEDEEMTKEEKQELEEEEEEEDDQDVMKVLGNLVVALFIKYWIYVCGGMFFFVSFEGKIVMYKIIYMVLFLFCVALYQVHYEWWRRILKYFWMSVVIYTMLVLIFIYTYQFENFPGLWQNMTGLKKEKLEDLGLKQFTVAELFTRIFIPTSFLLVCILHLHYFHDRFLELTDLKSIPSKEDSTIYRLAHPEGSLPDLAMMNLTTTLEASEAKQLAGPEEEKPGGCLAKAKKGELSRDSEDEEEEEDEEEETSVSNESDHLRNKWHLVMDRLTVLLLKFLECFHRLQTFLWWVLELHVIKVVSSYIIWVSVKEVSLFNYVFLISWAFALPYAKLRRLASSVCTVWTCVIIVCKMLYQLQTIKPENFSVNCSLPNENQTNIPLHQLNKSLLYSAPIDPTEWVGLRKSAPLLVYLRNNLLMLEYYRGRNNLTAPVSKTIFHDITRLHLDDGLVNCAKYFINYFFYKFGLETCFLMSVNVIGQRMDFYAMIHACWLIAVLYRRRRKAIAEIWPKYCCFLACILSFQYLICIGFPPAPCRDYPWRFKGASFNDNIVKWLYFPDFIVRPNPVFLVYDFMLLLCASLQRQIFEDENKAAVRIMAGDNVEICMNLDAASFSQHNPVPDFIHCRSYLDMSKVIIFSYLFWFVLTIIFITGTTRISIFCMGYLVACFYFLLFGGDLLLKPIKSILRYWDWLIAYNVFVITMKNILSIGACGYIEKLVQNSCWLIQAFSLACTVKGYKMPDDDSSCKLPSGEAGIIWDSICFAFLLLQRRVFMSYYFLHVVADIKASQILASRGAELFQATIVKAVKARIEEEKKSMDQLKRQMDRIKARQQKYKKGKERMLSLTQESGEGQDIQKLSEEDDEITILFCSVVRSGDYYLFETDSEEEEEEEFKKEDEEPPRRSAFQFVYQAWITDPKTALRQRRKEKKRSAREEQKRRRKGSGEGPVEWEDREAEPVKKKSDGPDNIIKRIFNILKFTWVLFLATVDSFTTWLNSISREHIDISTVLRIERCMLTREIKKGNVPTRESIHVYYQNHIMNLSRESGLDTIDDGPGGAAGAQSAHRMDSLDSHDSISSEPTQCTTLYSRQGTTETIEEVEAEQDEEAPTGAQDTESPQDPTEDGDMEAPPSYSKAVSFERLSFDSRDDSAGQTHMAVSPDDSRSDRLEASILPPLTHELTASELLLNKMFRDDELEESEKFYVGQPRFLLLFYAMYNTLVARSEMVCYFVIILNHMVSASVITLVLPILIFLWAMLSVPRPSRRFWMMAIVYTEVAIVVKYFFQFGFFPWNKNVELYKDKPYHPPNIIGVEKKEGYVLYDLIQLLALFFHRSILKCHGLWDEDDIVDSGSDQEDSDGELSVGQGRRASSDSLKSINLAASVESVHVTFPEQPVTIRRKRPSSGSQMSQGSSFSSDRSKRGSTSTRNSSQKGSSVLSIKQKSKRELYMEKLQEHLIKAKAFTIKKALQIYVPVKQFFYNLIHPDYSAVTDVYVLMFLADTVDFVIIVFGFWAFGKHSAAADITSSLSEDQVPGPFLVMVLIQFGTMVVDRALYLRKTVLGKVIFQVILVFGIHFWMFFILPGVTERKFSQNLVAQLWYFVKCVYFGLSAYQIRCGYPTRVLGNFLTKSYNYVNLFLFQGFRLVPFLTELRAVMDWVWTDTTLSLSSWICVEDIYAHIFILKCWRESEKRYPQPRGQKKKKVVKYGMGGMIIVLLICIVWFPLLFMSLIKSVAGVINQPLDVSVTITLGGYQPIFTMSAQQSQLKVMDQPKFNKFMKGAMQFLENYEKEDITVAELEGNSNSLWTISPPSKQKMISELMDHNSSFSVVFSWSIQRNMSLGAKAEIATDKLSFPLKNNTRKSIAKMIAGNDMESSTTPVTIERIYPYYVKAPSDSNSKPIKQLLSENNFMNITIILSRDNTTKSNSEWWVLNLTGNRLYNQEAQALELVVFNDKVSPPSLGFLAGYGIMGLYASVVLVIGKFVREFFSGISHSIMFEELPNVDRILKLCTDIFLVRETGELELEEDLYAKLIFLYRSPETMIKWTREKTN", "length": 2685, "header": "tr|I3L7W3-1|I3L7W3_PIG Computationally mapped isoform of Piezo type mechanosensitive ion channel component 2 OS=Sus scrofa OX=9823 GN=PIEZO2 PE=3 SV=4 CANONICAL=A0A5G2QRD6-1" }, "locus": { "chromosome": "6", "start_pos": 97944409, "end_pos": 97644177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026619.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026619.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020121.4", "url": "https://www.ensembl.org/id/ENSSSCP00000020121.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1859, "start_aa": "Thr", "end_pos": 1859, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1859", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F7M1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7M1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "mechanosensitive monoatomic ion channel activity", "id": "GO:0008381", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008381", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6" } ], "pmid": "" }, { "name": "monoatomic cation channel activity", "id": "GO:0005261", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005261", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of membrane potential", "id": "GO:0042391", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042391", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6" } ], "pmid": "" }, { "name": "cellular response to mechanical stimulus", "id": "GO:0071260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071260", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6" } ], "pmid": "" }, { "name": "detection of mechanical stimulus", "id": "GO:0050982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050982", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1028, "end_pos": 1030, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1032, "end_pos": 1034, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1039, "end_pos": 1041, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1049, "end_pos": 1051, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1091, "end_pos": 1093, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1735, "end_pos": 1737, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2176, "end_pos": 2178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2570, "end_pos": 2572, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2584, "end_pos": 2586, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2604, "end_pos": 2606, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2658, "end_pos": 2660, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2667, "end_pos": 2669, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2679, "end_pos": 2681, "annotation": "n_glycosylation_sequon" }, { "start_pos": 761, "end_pos": 763, "annotation": "n_glycosylation_sequon" }, { "start_pos": 865, "end_pos": 867, "annotation": "n_glycosylation_sequon" }, { "start_pos": 919, "end_pos": 921, "annotation": "n_glycosylation_sequon" }, { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QRD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRD6" }, { "id": "PF24874", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24874" } ], 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"monoisotopic_mass": 104506.0 }, "refseq": { "ac": "XP_020953704", "name": "outer dense fiber protein 2 isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953704" }, "gene_names": [ { "name": "ODF2", "type": "recommended", "evidence": [ { "id": "A0A5G2QQD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3" } ] }, { "name": "ODF2", "type": "synonym", "evidence": [ { "id": "XP_020953704", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953704" } ] } ], "protein_names": [ { "name": "Outer dense fiber protein 2", "type": "recommended", "evidence": [ { "id": "A0A5G2QQD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3/entry#names_and_taxonomy" } ] }, { "name": "Cenexin", "type": "synonym", "evidence": [ { "id": "A0A5G2QQD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3/entry#names_and_taxonomy" } ] }, { "name": "Outer dense fiber of sperm tails protein 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QQD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3/entry#names_and_taxonomy" } ] }, { "name": "outer dense fiber protein 2 isoform X6", "type": "synonym", "evidence": [ { "id": "XP_020953704", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953704" } ] } ], "function": [ { "annotation": "Seems to be a major component of sperm tail outer dense fibers (ODF). ODFs are filamentous structures located on the outside of the axoneme in the midpiece and principal piece of the mammalian sperm tail and may help to maintain the passive elastic structures and elastic recoil of the sperm tail. May have a modulating influence on sperm motility. Functions as a general scaffold protein that is specifically localized at the distal/subdistal appendages of mother centrioles. Component of the centrosome matrix required for the localization of PLK1 and NIN to the centrosomes. Required for the formation and/or maintenance of normal CETN1 assembly.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B051", "url": "https://www.uniprot.org/uniprotkb/A0A287B051#function" }, { "database": "UniProtKB", "id": "ARBA00037601", "url": "https://www.uniprot.org/uniprotkb/ARBA00037601#function" }, { "database": "UniProtKB", "id": "A0A287BGT7", "url": "https://www.uniprot.org/uniprotkb/A0A287BGT7#function" }, { "database": "UniProtKB", "id": "A0A5G2QQD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3#function" }, { "database": "UniProtKB", "id": "A0A5G2QR98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR98#function" }, { "database": "UniProtKB", "id": "F1RR82", "url": "https://www.uniprot.org/uniprotkb/F1RR82#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ODF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3", "locus": { "chromosome": "1", "start_pos": 268893387, "end_pos": 268856766, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005651", "url": "https://www.ensembl.org/id/ENSSSCG00000005651" } ] } } ], "crossref": [ { "id": "A0A5G2QQD3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQD3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005651", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005651", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156735", "url": "https://www.ncbi.nlm.nih.gov/gene/100156735", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026099", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026099", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23162", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23162", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23162:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23162:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27578", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27578", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27605", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27605", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2565942", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380259", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380284", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380320", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620912", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854518", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020953704", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953704", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B051", "url": "https://www.uniprot.org/uniprotkb/A0A287B051", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B051-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B051-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGT7", "url": "https://www.uniprot.org/uniprotkb/A0A287BGT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGT7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR98-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR98-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR82", "url": "https://www.uniprot.org/uniprotkb/F1RR82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR82-1", "url": "https://www.uniprot.org/uniprotkb/F1RR82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKDRSSTPPLHVHVDENTPVHVHIKKLPKASATSSQKSHKRGMKGDTVNVRRSVRVKTKVPWMPPGKSSARHVGCKWENPPHCLEITPPSSEKLVSVMRLSDLSTEDEDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTVLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHIEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRSDCSHRSCRSTGAAGASRSHPRPRLLPPPAAASAALHALLPSSAVPPPADTKLQIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEHAISKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANVFGDGPYTTFLTSSPIRSRSPPARAACHPWAGSPGGCRGNEALLSHTWKACWFSSLIS", "length": 913, "header": "tr|A0A5G2QQD3-1|A0A5G2QQD3_PIG Isoform 1 of Outer dense fiber protein 2 OS=Sus scrofa OX=9823 GN=ODF2 PE=3 SV=2 CANONICAL=A0A5G2QQD3-1" }, "isoforms": [ { "isoform_ac": "A0A287B051-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3/entry#A0A287B051-1", "sequence": { "sequence": "MKDRSSTPPLHVHVDENTPVHVHIKKLPKASATSSQKSHKRGMKGDTVNVRRSVRVKTKVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTVLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHIEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRDWQKGSHELARAGARLPR", "length": 576, "header": "tr|A0A287B051-1|A0A5G2QQD3_PIG Computationally mapped isoform of Outer dense fiber protein 2 OS=Sus scrofa OX=9823 GN=ODF2 PE=3 SV=2 CANONICAL=A0A5G2QQD3-1" }, "locus": { "chromosome": "1", "start_pos": 268886029, "end_pos": 268861037, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052884.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052884.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049590.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049590.2" } ] } }, { "isoform_ac": "A0A287BGT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3/entry#A0A287BGT7-1", "sequence": { "sequence": "MSASSSGGSPRFPSCGKNGVTSLTQKKVLRTPCGAPSVTVTKSHKRGMKGDTVNVRRSVRVKTKNPPHCLEITPPSSEKLVSVMRLSDLSTEDEDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTVLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHIEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEHAISKERAAQNKILDLETQLSRTKTELSQLRRSRDDVSGAGGRREGIPPPSPFSCGPVLFCSVFKYS", "length": 779, "header": "tr|A0A287BGT7-1|A0A5G2QQD3_PIG Computationally mapped isoform of Outer dense fiber protein 2 OS=Sus scrofa OX=9823 GN=ODF2 PE=3 SV=3 CANONICAL=A0A5G2QQD3-1" }, "locus": { "chromosome": "1", "start_pos": 268890291, "end_pos": 268858739, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043418.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043418.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055351.3", "url": "https://www.ensembl.org/id/ENSSSCP00000055351.3" } ] } }, { "isoform_ac": "A0A5G2QQD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3/entry#A0A5G2QQD3-1", "sequence": { "sequence": "MKDRSSTPPLHVHVDENTPVHVHIKKLPKASATSSQKSHKRGMKGDTVNVRRSVRVKTKVPWMPPGKSSARHVGCKWENPPHCLEITPPSSEKLVSVMRLSDLSTEDEDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTVLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHIEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRSDCSHRSCRSTGAAGASRSHPRPRLLPPPAAASAALHALLPSSAVPPPADTKLQIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEHAISKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANVFGDGPYTTFLTSSPIRSRSPPARAACHPWAGSPGGCRGNEALLSHTWKACWFSSLIS", "length": 913, "header": "tr|A0A5G2QQD3-1|A0A5G2QQD3_PIG Isoform 1 of Outer dense fiber protein 2 OS=Sus scrofa OX=9823 GN=ODF2 PE=3 SV=2 CANONICAL=A0A5G2QQD3-1" }, "locus": { "chromosome": "1", "start_pos": 268891348, "end_pos": 268861037, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077623.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077623.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067107.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067107.2" } ] } }, { "isoform_ac": "A0A5G2QR98-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3/entry#A0A5G2QR98-1", "sequence": { "sequence": "MSASSSGGSPRFPSCGKNGVTSLTQKKVLRTPCGAPSVTVTKSHKRGMKGDTVNVRRSVRVKTKNPPHCLEITPPSSEKLVSVMRLSDLSTEDEDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTVLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHIEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEHAISKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANVFGDGPYTTFLTSSPIRSRSPPARAACHPWAGSPGGCRGNEALLSHTWKACWFSSLIS", "length": 845, "header": "tr|A0A5G2QR98-1|A0A5G2QR98_PIG Computationally mapped isoform of Outer dense fiber protein 2 OS=Sus scrofa OX=9823 GN=ODF2 PE=3 SV=2 CANONICAL=A0A5G2QQD3-1" }, "locus": { "chromosome": "1", "start_pos": 268891348, "end_pos": 268858739, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084154.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084154.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060800.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060800.2" } ] } }, { "isoform_ac": "F1RR82-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD3/entry#F1RR82-1", "sequence": { "sequence": "MKDRSSTPPLHVHVDENTPVHVHIKKLPKASATSSQKSHKRGMKGDTVNVRRSVRVKTKVPWMPPGKSSARHVGCKWENPPHCLEITPPSSEKLVSVMRLSDLSTEDEDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTVLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHIEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEHAISKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANVFGDGPYTTFLTSSPIRSRSPPARAACHPWAGSPGGCRGNEALLSHTWKACWFSSLIS", "length": 859, "header": "tr|F1RR82-1|A0A5G2QQD3_PIG Computationally mapped isoform of Outer dense fiber protein 2 OS=Sus scrofa OX=9823 GN=ODF2 PE=3 SV=5 CANONICAL=A0A5G2QQD3-1" }, "locus": { "chromosome": "1", "start_pos": 268891348, "end_pos": 268861037, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006213.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006213.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006054.5", "url": "https://www.ensembl.org/id/ENSSSCP00000006054.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart 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"tr|A0A287B1U6-1|A0A5G2QRA1_PIG Computationally mapped isoform of Protein kinase C-binding protein NELL2 OS=Sus scrofa OX=9823 GN=NELL2 PE=1 SV=3 CANONICAL=A0A5G2QRA1-1" }, "locus": { "chromosome": "5", "start_pos": 75836394, "end_pos": 75505768, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045629.4", "url": "https://www.ensembl.org/id/ENSSSCT00000045629.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050405.3", "url": "https://www.ensembl.org/id/ENSSSCP00000050405.3" } ] } }, { "isoform_ac": "A0A5G2QRA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRA1/entry#A0A5G2QRA1-1", "sequence": { "sequence": 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"locus": { "chromosome": "5", "start_pos": 75836394, "end_pos": 75505768, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068987.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068987.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067284.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067284.2" } ] } }, { "isoform_ac": "F1SGY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRA1/entry#F1SGY4-1", "sequence": { "sequence": "MGLGASLFKAWLIISVWGLGVDPSLQIDVLTELELGESTTGVRQVPGLHNGTKAFLFQDTPRSIKASTATAEQFFQKLRNKHEFTVLVTLKQTHLNSGVILSIHHLDHRYLELESSGHRNEVRLHYRSGSHHPHTEVFPYILADDKWHKLSLAISASHLILHIDCNKIYERVVEKPSTDLPVGTTFWLGQRNNAHGYFKGIMQDVQLLVMPQGFIAQCPDLNRMCFLLNFVRNLSRAEQRMNRLDQCYCERTCTTKGITYREFESWTDGCKNCTCLNGTIQCETLICPNPDCPLKSALAYVDGKCCKECKSVCQFQGQTYFEGERNTVYSSSGVCVLYECKDQTMKLVESSSCPALDCPESHQITLSHSCCKVCKGYDFCSERHNCMENSVCRNLNDRAVCSCRDGFRALREDNAYCEDVDECAEGRHYCRENTMCVNTPGSFMCICKTGYIRIDDYSCTEHDECITNQHNCDENALCFNTVGGHNCVCKPGYTGNGTTCKAFCKDGCRNGGACIAANVCACPQGFTGPSCETDIDECSDGFVQCDSRANCINLPGWYHCECRDGYHDNGMFSPSGESCEDIDECGTGRHSCANDTICFNLDGGYDCRCPHGKNCTGDCVHDGKIKHSGQIWVLENDRCSVCSCQNGFVMCRRMVCDCENPTVDLFCCPECDPRLSSQCLHQNGEIYNSGDTWVQNCQQCRCLQGEVDCWPLPCPEVECEFSVLPENECCPRCVTDPCQADTIRNDITKTCLDEMNVVRFTGSSWIKHGTECTLCQCKNGHICCSVDPQCLQEL", "length": 794, "header": "tr|F1SGY4-1|F1SGY4_PIG Computationally mapped isoform of Protein kinase C-binding protein NELL2 OS=Sus scrofa OX=9823 GN=NELL2 PE=4 SV=4 CANONICAL=A0A5G2QRA1-1" }, "locus": { "chromosome": "5", "start_pos": 75836069, "end_pos": 75505768, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000870.6", "url": "https://www.ensembl.org/id/ENSSSCT00000000870.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000853.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000853.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B1U6", "url": "https://www.uniprot.org/uniprotkb/A0A287B1U6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q90827-1", "protein_name": "Protein NEL", "gene_name": "NEL", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": 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"Chicken" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRA1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRA1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRA1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRA1" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRA1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRA1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "heparin binding", "id": "GO:0008201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008201", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRA1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRA1" } ], "pmid": "" }, { "name": "protein kinase C binding", "id": "GO:0005080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005080", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRA1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRA1" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRA1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRA1" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRA1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRA1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "fertilization", "id": "GO:0009566", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009566", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRA1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRA1" } ], "pmid": "" }, { "name": "commissural neuron axon guidance", "id": "GO:0071679", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071679", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRA1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRA1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 225, "end_pos": 227, "annotation": "n_glycosylation_sequon" }, { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" }, { "start_pos": 517, "end_pos": 519, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" }, { "start_pos": 615, "end_pos": 617, "annotation": "n_glycosylation_sequon" }, { "start_pos": 635, "end_pos": 637, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRA1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 815, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRA1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRA1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QRA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRA1" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 397, "end_pos": 439, "start_aa": "Gly", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QRA1", 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} ] }, { "name": "protein SCAI isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003122214", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122214" } ] } ], "function": [ { "annotation": "Tumor suppressor which functions to suppress MRTFA-induced SRF transcriptional activity.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B360", "url": "https://www.uniprot.org/uniprotkb/A0A287B360#function" }, { "database": "UniProtKB", "id": "PIRNR013022", "url": "https://www.uniprot.org/uniprotkb/PIRNR013022#function" }, { "database": "UniProtKB", "id": "A0A5G2QUL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SCAI", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0", "locus": { "chromosome": "1", "start_pos": 265714211, "end_pos": 265867101, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005598", "url": "https://www.ensembl.org/id/ENSSSCG00000005598" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005598", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005598", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515704", "url": "https://www.ncbi.nlm.nih.gov/gene/100515704", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016607", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016607", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022709", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022709", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515704", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515704", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HCIHPGD", "url": "https://omabrowser.org/oma/group/HCIHPGD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QUL0", "url": "https://www.orthodb.org/?gene=A0A5G2QUL0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8D0J218", "url": "https://www.orthodb.org/?gene=A0A8D0J218", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21243", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21243", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12070", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12070", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5663220", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003122214", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122214", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B360", "url": "https://www.uniprot.org/uniprotkb/A0A287B360", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B360-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B360-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0J218", "url": "https://www.uniprot.org/uniprotkb/A0A8D0J218", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0J218-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0J218-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKQ5", "url": "https://www.uniprot.org/uniprotkb/F1SKQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKQ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SKQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRGARQPQQPRSRLAPRLTGTVEKPPRKRKSRTEFALKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAILKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFLENTIDDY", "length": 606, "header": "tr|A0A5G2QUL0-1|A0A5G2QUL0_PIG Isoform 1 of Protein SCAI OS=Sus scrofa OX=9823 GN=SCAI PE=1 SV=1 CANONICAL=A0A5G2QUL0-1" }, "isoforms": [ { "isoform_ac": "A0A287B360-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0/entry#A0A287B360-1", "sequence": { "sequence": "MVRGARQPQQPRSRLAPRLTGTVEKPPRKRKSRTEFALKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGPYDFGGVLTNSNRDIINGDAILKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFLENTIDDY", "length": 600, "header": "tr|A0A287B360-1|A0A5G2QUL0_PIG Computationally mapped isoform of Protein SCAI OS=Sus scrofa OX=9823 GN=SCAI PE=1 SV=2 CANONICAL=A0A5G2QUL0-1" }, "locus": { "chromosome": "1", "start_pos": 265866988, "end_pos": 265716517, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044592.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044592.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050896.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050896.2" } ] } }, { "isoform_ac": "A0A5G2QUL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0/entry#A0A5G2QUL0-1", "sequence": { "sequence": "MVRGARQPQQPRSRLAPRLTGTVEKPPRKRKSRTEFALKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAILKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFLENTIDDY", "length": 606, "header": "tr|A0A5G2QUL0-1|A0A5G2QUL0_PIG Isoform 1 of Protein SCAI OS=Sus scrofa OX=9823 GN=SCAI PE=1 SV=1 CANONICAL=A0A5G2QUL0-1" }, "locus": { "chromosome": "1", "start_pos": 265866988, "end_pos": 265716517, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075927.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075927.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065657.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065657.1" } ] } }, { "isoform_ac": "A0A8D0J218-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0/entry#A0A8D0J218-1", "sequence": { "sequence": "MSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAILKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFLENTIDDY", "length": 565, "header": "tr|A0A8D0J218-1|A0A5G2QUL0_PIG Computationally mapped isoform of Protein SCAI OS=Sus scrofa OX=9823 GN=SCAI PE=1 SV=1 CANONICAL=A0A5G2QUL0-1" }, "locus": { "chromosome": "1", "start_pos": 265793523, "end_pos": 265716517, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100575.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100575.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077879.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077879.1" } ] } }, { "isoform_ac": "F1SKQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0/entry#F1SKQ5-1", "sequence": { "sequence": "MVRGARQPQQPRSRLAPRLTGTVEKPPRKRKSRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAILKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFLENTIDDY", "length": 562, "header": "tr|F1SKQ5-1|A0A5G2QUL0_PIG Computationally mapped isoform of Protein SCAI OS=Sus scrofa OX=9823 GN=SCAI PE=1 SV=3 CANONICAL=A0A5G2QUL0-1" }, "locus": { "chromosome": "1", "start_pos": 265866988, "end_pos": 265716517, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006156.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006156.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005997.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005997.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKQ5", "url": "https://www.uniprot.org/uniprotkb/F1SKQ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515704", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515704", "resource": "KEGG Pathway" }, { "id": "R-SSC-5663220", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "resource": "Reactome", "description": "RHO GTPases Activate Formins" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2U9L8-1", "protein_name": "Protein SCAI", "gene_name": "SCAI", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVRGAARQRLPRSGPASRAPGPAEEPRRKRKPRTEFALKEIMSSGGAEDDIPQAERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLSETGAPLLEQGMIVGQLALADALIIGNCNNQVKFSELTIDMFRMLQALEREPMNLASQMNKPGMQESTEKPARRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPSGRSDSEGPYDFGGVLTNSNRDVINGDAIHKRNQSYKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQDYLRKINRDIAQLLTHSRSIDQSFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRQETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFLENTLDDY", "length": 607 }, "evidence": [ { "id": "A0A5G2QUL0", "url": "https://omabrowser.org/oma/group/A0A5G2QUL0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8I6GB80-1", "protein_name": "Protein SCAI", "gene_name": "Scai", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRSSCFCGRHFTCWDIASVCTFTLVNEYIFFYRTEFTLKETMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGIQEPADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDGEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLLLTRFVFCSATMRMHKAFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNIFFENSMDDY", "length": 607 }, "evidence": [ { "id": "A0A5G2QUL0", "url": "https://omabrowser.org/oma/group/A0A5G2QUL0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9PER3-1", "protein_name": "Protein SCAI", "gene_name": "Dmel\\CG13293", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MVKMESTEEQDRKLVLEFCHLLEKSKQLFNGLRDLPQYGHRQWQAYFGRTFDVYTKLWKFQQQHRMVLDSKYGLKRWQIGEIASKIGQLYYHYYLRTSETNYLNEAYQFYAAIRGRAYYSRAAKEDRPDLMVKKLRYYARFIVVCLLLKKMKLVRELVTELEKQIQEFPRSYEPEDHLEWSLVLEEIKGFIKAEAAVAVLHADSNPIILSHSGSGSRLSPLTTPPCERSPHMTLSLQEILIVGSACEQAKFSELTMDMFRMLQTLEREPTESTTNPLSMAHGLHGHDASPAASRIPPYGVPGSKGYMENGRAFRDNPHKYLLYKPSISQLLVFLASGSKELPLGGALLLYMSADGCFSTTKHPEDFGYELGGLATSVKRDSVDGGGLSCRGKSYKENHCLYPGDLYPFTRRPMFVVIDSDNSFVFQHIPRYFGQPLVVLMSPQDVPPAFQADVQHHGSLFTLFLHSPLTALCYICNVGDVPIHHWERCQTYVDRFITEASRLVTRCRIDEIEQGIGFIDSSYVQFFGDDFLRTLILRFVFCDVVLRLHRGFRGRHMRPRCEPQLPANELLEHPSLSHIIFQLASALDVRGHFSEGPECD", "length": 599 }, "evidence": [ { "id": "A0A5G2QUL0", "url": "https://omabrowser.org/oma/group/A0A5G2QUL0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q54YY1-1", "protein_name": "Protein SCAI homolog", "gene_name": "scai", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEITTKSSTTTDDLNNNNNKTVTPIKSENSATGHTSPPNNSTTTTTSSTSAQPITVLPTEIIKTFEHLLRKSQRLFIGLRDLPQFGRQWQPFFQKTFELYTKLWKFQQQYRSILEDKSKYGLKRCEIGEIASKIGQLYYHYYLRTSDTNYLNESYIFYEAIRLRSYFKDVSLDKTPDMMVKQLRYYARFIVVCLLLNKKKVVFDLIEELLKHVNDYTKIYKPSDAQEWSLVLQEIFSFLQADQCATFSDTNQSPSLTNSGNIINNNSNSNNNNGEHTNNTVQSHRLNHLNCPSPPFPLESTQILQQAILVGSQQNQIKFSEITLDMFRMTQSLEYEPMSEAKENDMKLKQQLTALQQQQQQQAAEAKEKNNGTDQQNTTIPSQPLQQHLHHQQQQQQNGNGSGIKKRNPHKYLLYRPTISQILLFLSYSFKELGDNKAMLLYICADGFTNEDNHVNQHIQPPPSIQQETVPSLIDDSNTNIPITTTATATNPLYNKLFTKGLTLNMQKPSQAINSPTVNNNNNNTTTNVTVPTTTTTATNVTAQTTTTTTTTNSTSTSTTSNIPIYKYNEAPFNTKVESLYPMDLLPFCRKPFFLIVNSQSSDIFNELPTFNQPFVSLLSPQSIPKKLVSNLKCGNLFTFFLHDPISAFCDISCGNKIPSKTFNNISLLAQNSLEIISKLLFECVDLHPSFSFFLLDDFLRSFIIRFIFCHATFYLHKEFQDNIYQVKSNPPLPKSLLYNQSILKSIHQLVSELDVSDQFLGLNENRLVIHEN", "length": 773 }, "evidence": [ { "id": "A0A5G2QUL0", "url": "https://omabrowser.org/oma/group/A0A5G2QUL0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8C8N2-1", "protein_name": "Protein SCAI", "gene_name": "Scai", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVRGARQSQQPRSRLAPRLSGTVEKPPRKRKSRTEFTLKETMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGIQEPADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDGEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGDLYPFTRKPLFIVVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLLLTRFVFCSATMRMHKAFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNIFFENSMDDY", "length": 606 }, "evidence": [ { "id": "A0A5G2QUL0", "url": "https://omabrowser.org/oma/group/A0A5G2QUL0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N9R8-1", "protein_name": "Protein SCAI", "gene_name": "SCAI", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSRTEFALKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFFENTIDDY", "length": 606 }, "evidence": [ { "id": "A0A5G2QUL0", "url": "https://omabrowser.org/oma/group/A0A5G2QUL0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0" } ], "pmid": "" }, { "name": "negative regulation of cell migration", "id": "GO:0030336", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030336", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0" } ], "pmid": "" }, { "name": "negative regulation of Rho protein signal transduction", "id": "GO:0035024", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035024", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" }, { "start_pos": 443, "end_pos": 445, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 407, "end_pos": 409 }, { "start_pos": 443, "end_pos": 445 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { 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"total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A5G2QSK4-1", "uniprot_ac": "A0A5G2QSK4", "uniprot_id": "A0A5G2QSK4_PIG", "mass": { "chemical_mass": 53785.0, "monoisotopic_mass": 53785.0 }, "refseq": {}, "gene_names": [ { "name": "GDI2", "type": "recommended", "evidence": [ { "id": "A0A5G2QSK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4" } ] } ], "protein_names": [ { "name": "Rab GDP dissociation inhibitor", "type": "recommended", "evidence": [ { "id": "A0A5G2QSK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "GDP-dissociation inhibitor preventing the GDP to GTP exchange of most Rab proteins. By keeping these small GTPases in their inactive GDP-bound form regulates intracellular membrane trafficking. Negatively regulates protein transport to the cilium and ciliogenesis through the inhibition of RAB8A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B4B7", "url": "https://www.uniprot.org/uniprotkb/A0A287B4B7#function" }, { "database": "UniProtKB", "id": "ARBA00045960", "url": "https://www.uniprot.org/uniprotkb/ARBA00045960#function" }, { "database": "UniProtKB", "id": "A0A287B6B3", "url": "https://www.uniprot.org/uniprotkb/A0A287B6B3#function" }, { "database": "UniProtKB", "id": "A0A5G2QSK4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4#function" }, { "database": "UniProtKB", "id": "F1RUK8", "url": "https://www.uniprot.org/uniprotkb/F1RUK8#function" }, { "database": "UniProtKB", "id": "A0A5G2RKF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKF7#function" } ] }, { "annotation": "Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B4B7", "url": "https://www.uniprot.org/uniprotkb/A0A287B4B7#function" }, { "database": "UniProtKB", "id": "RU363124", "url": "https://www.uniprot.org/uniprotkb/RU363124#function" }, { "database": "UniProtKB", "id": "A0A287B6B3", "url": "https://www.uniprot.org/uniprotkb/A0A287B6B3#function" }, { "database": "UniProtKB", "id": "A0A5G2QSK4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4#function" }, { "database": "UniProtKB", "id": "F1RUK8", "url": "https://www.uniprot.org/uniprotkb/F1RUK8#function" }, { "database": "UniProtKB", "id": "A0A5G2RKF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKF7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GDI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4", "locus": { "chromosome": "10", "start_pos": 65196447, "end_pos": 65160653, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011137", "url": "https://www.ensembl.org/id/ENSSSCG00000011137" } ] } } ], "crossref": [ { "id": "A0A5G2QSK4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011137", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011137", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018203", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018203", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11787", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11787", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11787:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11787:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00996", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00996", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8876198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B4B7", "url": "https://www.uniprot.org/uniprotkb/A0A287B4B7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B4B7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B4B7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6B3", "url": "https://www.uniprot.org/uniprotkb/A0A287B6B3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B6B3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSK4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUK8", "url": "https://www.uniprot.org/uniprotkb/F1RUK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUK8-1", "url": "https://www.uniprot.org/uniprotkb/F1RUK8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPASMGRGRDWNVDLIPKFLMANGKEWYYLGNIAGAWGDLMVGLSNRLNYVTLTGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRKKNDIYGED", "length": 476, "header": "tr|A0A5G2QSK4-1|A0A5G2QSK4_PIG Isoform 1 of Rab GDP dissociation inhibitor OS=Sus scrofa OX=9823 GN=GDI2 PE=1 SV=2 CANONICAL=A0A5G2QSK4-1" }, "isoforms": [ { "isoform_ac": "A0A287B4B7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4/entry#A0A287B4B7-1", "sequence": { "sequence": "MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDIYKRIGGFPHPIHVTNTGLFFLVKDQF", "length": 446, "header": "tr|A0A287B4B7-1|A0A5G2QSK4_PIG Computationally mapped isoform of Rab GDP dissociation inhibitor OS=Sus scrofa OX=9823 GN=GDI2 PE=1 SV=2 CANONICAL=A0A5G2QSK4-1" }, "locus": { "chromosome": "10", "start_pos": 65195894, "end_pos": 65160895, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042023.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042023.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051270.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051270.2" } ] } }, { "isoform_ac": "A0A287B6B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4/entry#A0A287B6B3-1", "sequence": { "sequence": "MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPASMGRGRDWNVDLIPKFLMANGLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRKKNDIYGED", "length": 400, "header": "tr|A0A287B6B3-1|A0A5G2QSK4_PIG Computationally mapped isoform of Rab GDP dissociation inhibitor OS=Sus scrofa OX=9823 GN=GDI2 PE=1 SV=2 CANONICAL=A0A5G2QSK4-1" }, "locus": { "chromosome": "10", "start_pos": 65195642, "end_pos": 65160895, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054918.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054918.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051633.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051633.2" } ] } }, { "isoform_ac": "A0A5G2QSK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4/entry#A0A5G2QSK4-1", "sequence": { "sequence": "MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPASMGRGRDWNVDLIPKFLMANGKEWYYLGNIAGAWGDLMVGLSNRLNYVTLTGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRKKNDIYGED", "length": 476, "header": "tr|A0A5G2QSK4-1|A0A5G2QSK4_PIG Isoform 1 of Rab GDP dissociation inhibitor OS=Sus scrofa OX=9823 GN=GDI2 PE=1 SV=2 CANONICAL=A0A5G2QSK4-1" }, "locus": { "chromosome": "10", "start_pos": 65195642, "end_pos": 65160895, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068157.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068157.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061148.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061148.2" } ] } }, { "isoform_ac": "A0A5G2RKF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4/entry#A0A5G2RKF7-1", "sequence": { "sequence": "CRCNMGKKVNNIFFCLFAISWVAPTAYYGGSQECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKKAPDDFCPAK", "length": 462, "header": "tr|A0A5G2RKF7-1|A0A5G2RKF7_PIG Computationally mapped isoform of Rab GDP dissociation inhibitor OS=Sus scrofa OX=9823 GN=GDI2 PE=1 SV=2 CANONICAL=A0A5G2QSK4-1" }, "locus": { "chromosome": "10", "start_pos": 65196431, "end_pos": 65173920, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077549.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077549.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072582.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072582.2" } ] } }, { "isoform_ac": "F1RUK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4/entry#F1RUK8-1", "sequence": { "sequence": "MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQTSRSSYPARTTPPLTSRPPVTTSRTSIRG", "length": 426, "header": "tr|F1RUK8-1|A0A5G2QSK4_PIG Computationally mapped isoform of Rab GDP dissociation inhibitor OS=Sus scrofa OX=9823 GN=GDI2 PE=1 SV=2 CANONICAL=A0A5G2QSK4-1" }, "locus": { "chromosome": "10", "start_pos": 65195577, "end_pos": 65160895, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012189.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012189.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011877.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011877.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B4B7", "url": "https://www.uniprot.org/uniprotkb/A0A287B4B7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", 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} ], "pmid": "" }, { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4" } ], "pmid": "" }, { "name": "negative regulation of cilium assembly", "id": "GO:1902018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902018", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK4" } ], "pmid": "" }, { "name": "negative regulation of protein localization to cilium", "id": "GO:1903565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903565", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK4", 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